Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021047.t1 | XP_003606603.1 | 95.8 | 120 | 5 | 0 | 3 | 122 | 4 | 123 | 3.80E-51 | 210.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021047.t1 | Q9M5L0 | 91.6 | 119 | 10 | 0 | 3 | 121 | 4 | 122 | 1.6e-50 | 199.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021047.t1 | G7JTN1 | 95.8 | 120 | 5 | 0 | 3 | 122 | 4 | 123 | 2.8e-51 | 210.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021047 | MS.gene066455 | PPI |
| MS.gene021047 | MS.gene036455 | PPI |
| MS.gene021047 | MS.gene074269 | PPI |
| MS.gene021047 | MS.gene029109 | PPI |
| MS.gene021047 | MS.gene67378 | PPI |
| MS.gene021047 | MS.gene75171 | PPI |
| MS.gene75171 | MS.gene021047 | PPI |
| MS.gene90833 | MS.gene021047 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021047.t1 | MTR_4g062410 | 95.041 | 121 | 6 | 0 | 2 | 122 | 3 | 123 | 1.55e-76 | 222 |
| MS.gene021047.t1 | MTR_1g067490 | 92.623 | 122 | 9 | 0 | 1 | 122 | 1 | 122 | 2.11e-75 | 219 |
| MS.gene021047.t1 | MTR_4g072410 | 91.597 | 119 | 10 | 0 | 4 | 122 | 3 | 121 | 1.18e-71 | 209 |
| MS.gene021047.t1 | MTR_1g115545 | 90.000 | 120 | 12 | 0 | 3 | 122 | 2 | 121 | 1.95e-71 | 209 |
| MS.gene021047.t1 | MTR_7g080090 | 85.000 | 120 | 18 | 0 | 3 | 122 | 4 | 123 | 2.31e-65 | 194 |
| MS.gene021047.t1 | MTR_1g105880 | 70.787 | 89 | 15 | 1 | 10 | 98 | 2 | 79 | 1.24e-33 | 112 |
| MS.gene021047.t1 | MTR_5g045540 | 85.294 | 34 | 5 | 0 | 67 | 100 | 3 | 36 | 3.05e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021047.t1 | AT3G09500 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 4.61e-68 | 201 |
| MS.gene021047.t1 | AT5G02610 | 87.395 | 119 | 15 | 0 | 3 | 121 | 4 | 122 | 4.81e-68 | 201 |
| MS.gene021047.t1 | AT2G39390 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 5.86e-68 | 201 |
| MS.gene021047.t1 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 2.17e-65 | 194 |
| MS.gene021047.t1 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 2.17e-65 | 194 |
| MS.gene021047.t1 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 2.17e-65 | 194 |
| MS.gene021047.t1 | AT5G02610 | 73.239 | 142 | 15 | 1 | 3 | 121 | 4 | 145 | 2.63e-62 | 187 |
| MS.gene021047.t1 | AT3G55170 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.80e-50 | 155 |
| MS.gene021047.t1 | AT3G55170 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.80e-50 | 155 |
Find 25 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAGCTCTTGTCTTCT+TGG | 0.184523 | 4.3:-40754962 | None:intergenic |
| AGCATTGAGGGAAGTTTATA+AGG | 0.261646 | 4.3:+40754909 | MS.gene021047:CDS |
| GGTCCAACATTACGCCTTAA+TGG | 0.287059 | 4.3:-40756290 | None:intergenic |
| TACATCTTGGAAAGCTTGTT+TGG | 0.300449 | 4.3:-40754423 | None:intergenic |
| CTAATAGCTCTTGTCTTCTT+GGG | 0.344589 | 4.3:-40754961 | None:intergenic |
| ACATCTTGGAAAGCTTGTTT+GGG | 0.366421 | 4.3:-40754422 | None:intergenic |
| AGTGAGAAAGTATGCCATTA+AGG | 0.406198 | 4.3:+40756276 | MS.gene021047:CDS |
| GGGCAAGAAGTACTTGCCTT+TGG | 0.416589 | 4.3:+40754930 | MS.gene021047:CDS |
| TTTGAACGCAATAGCTATCA+AGG | 0.421455 | 4.3:+40754296 | MS.gene021047:intron |
| TTGGATGCAGCAAGGTTGTT+CGG | 0.445039 | 4.3:+40754839 | MS.gene021047:intron |
| GCATTGAGGGAAGTTTATAA+GGG | 0.470641 | 4.3:+40754910 | MS.gene021047:CDS |
| AAGCTTGTTTGGGGCACCGC+CGG | 0.495153 | 4.3:-40754412 | None:intergenic |
| CTTCGCGTCGCGAAAGTCAC+CGG | 0.504819 | 4.3:+40754393 | MS.gene021047:CDS |
| GAAACAAAAGACAGCATTGA+GGG | 0.506620 | 4.3:+40754897 | MS.gene021047:CDS |
| AAGACGCCTCACTAAGCATC+AGG | 0.512300 | 4.3:+40754984 | MS.gene021047:CDS |
| TTAATGGCATACTTTCTCAC+TGG | 0.517469 | 4.3:-40756274 | None:intergenic |
| TTCTTGGGACGGAGATCCAA+AGG | 0.574336 | 4.3:-40754946 | None:intergenic |
| TAGCTCTTGTCTTCTTGGGA+CGG | 0.580244 | 4.3:-40754957 | None:intergenic |
| TAATGGCATACTTTCTCACT+GGG | 0.582481 | 4.3:-40756273 | None:intergenic |
| GACAGAGCGTGAGAAGAAGA+AGG | 0.584517 | 4.3:+40756240 | MS.gene021047:CDS |
| CATCTTGGAAAGCTTGTTTG+GGG | 0.612959 | 4.3:-40754421 | None:intergenic |
| CTATCAAGGTTTATGAGCTG+AGG | 0.615557 | 4.3:+40754310 | MS.gene021047:CDS |
| CGCGTCGCGAAAGTCACCGG+CGG | 0.657741 | 4.3:+40754396 | MS.gene021047:CDS |
| AGAAACAAAAGACAGCATTG+AGG | 0.664403 | 4.3:+40754896 | MS.gene021047:CDS |
| CATGTACCTGATGCTTAGTG+AGG | 0.666111 | 4.3:-40754990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGAGAATAGAATAA+AGG | - | chr4.3:40754220-40754239 | None:intergenic | 15.0% |
| !! | TTTGTTACAATTATAATTGT+GGG | + | chr4.3:40755829-40755848 | MS.gene021047:intron | 15.0% |
| !!! | TGAATTAATTTGATGAAATT+CGG | + | chr4.3:40755067-40755086 | MS.gene021047:intron | 15.0% |
| !!! | TTTTTTCATAATTGTTTATG+TGG | + | chr4.3:40755776-40755795 | MS.gene021047:intron | 15.0% |
| !! | CTTTGTTACAATTATAATTG+TGG | + | chr4.3:40755828-40755847 | MS.gene021047:intron | 20.0% |
| !! | TAATATGTGGTCTATATTAA+TGG | + | chr4.3:40754699-40754718 | MS.gene021047:intron | 20.0% |
| !! | TATAAGCTTTCTTCATAAAA+TGG | + | chr4.3:40756176-40756195 | MS.gene021047:intron | 20.0% |
| !! | TTATGAAAAAATGAGTAAGT+TGG | - | chr4.3:40755767-40755786 | None:intergenic | 20.0% |
| !! | TTGTTACAATTATAATTGTG+GGG | + | chr4.3:40755830-40755849 | MS.gene021047:intron | 20.0% |
| !! | TTTGTGTTAATTTAAATACG+CGG | + | chr4.3:40754514-40754533 | MS.gene021047:intron | 20.0% |
| !!! | AAGCAAAAAAACTACTTTTT+AGG | - | chr4.3:40754750-40754769 | None:intergenic | 20.0% |
| !!! | AAGTTATCTTTGTAGATTTT+TGG | + | chr4.3:40755316-40755335 | MS.gene021047:intron | 20.0% |
| !!! | AGTTATCTTTGTAGATTTTT+GGG | + | chr4.3:40755317-40755336 | MS.gene021047:intron | 20.0% |
| !!! | ATAATGATTTTCATGATGTA+TGG | + | chr4.3:40755196-40755215 | MS.gene021047:intron | 20.0% |
| !!! | TCATCTATAGTAATTTTGAT+TGG | - | chr4.3:40754600-40754619 | None:intergenic | 20.0% |
| !!! | TCTTTTAAATATTGAAGTTC+TGG | + | chr4.3:40755254-40755273 | MS.gene021047:intron | 20.0% |
| !!! | TGATTGTTTTTGTTATTGTT+TGG | + | chr4.3:40754820-40754839 | MS.gene021047:intron | 20.0% |
| !!! | TTAATAGTTTGTAAAGTTTG+TGG | + | chr4.3:40755141-40755160 | MS.gene021047:intron | 20.0% |
| ! | AAGCAAGAAAACTACTTTAT+AGG | + | chr4.3:40754644-40754663 | MS.gene021047:intron | 25.0% |
| ! | AATTAAGTGCAATAGAATAG+CGG | - | chr4.3:40754457-40754476 | None:intergenic | 25.0% |
| ! | ATGAGTACAAAAAATGATGT+TGG | - | chr4.3:40754247-40754266 | None:intergenic | 25.0% |
| ! | ATTGTGGAATATAACAATAG+TGG | + | chr4.3:40755515-40755534 | MS.gene021047:intron | 25.0% |
| ! | CATTGAATAAATGATGTATG+AGG | + | chr4.3:40754669-40754688 | MS.gene021047:intron | 25.0% |
| ! | TAGAGAATAGAATAAAGGAT+TGG | - | chr4.3:40754215-40754234 | None:intergenic | 25.0% |
| ! | TGGATTAATGGAAACATTAT+TGG | + | chr4.3:40755274-40755293 | MS.gene021047:intron | 25.0% |
| !! | ATTTTATCAATGTGCCTTAT+TGG | + | chr4.3:40755898-40755917 | MS.gene021047:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr4.3:40754761-40754780 | MS.gene021047:intron | 25.0% |
| !!! | AATGGAAACATTATTGGTTT+AGG | + | chr4.3:40755280-40755299 | MS.gene021047:intron | 25.0% |
| !!! | ATATTGAAGTTCTGGATTAA+TGG | + | chr4.3:40755262-40755281 | MS.gene021047:intron | 25.0% |
| !!! | ATGGAAACATTATTGGTTTA+GGG | + | chr4.3:40755281-40755300 | MS.gene021047:intron | 25.0% |
| !!! | CATACATGTTTTGACTTTTA+AGG | + | chr4.3:40756035-40756054 | MS.gene021047:intron | 25.0% |
| AAATGTGGTACCATTAAATG+AGG | + | chr4.3:40755740-40755759 | MS.gene021047:intron | 30.0% | |
| AATGGCTGAATGAATTTACT+TGG | + | chr4.3:40756194-40756213 | MS.gene021047:intron | 30.0% | |
| ATGAAATTCGGACTTATTCT+TGG | + | chr4.3:40755079-40755098 | MS.gene021047:intron | 30.0% | |
| ATGAGGTCTATGTTAATATG+TGG | + | chr4.3:40754686-40754705 | MS.gene021047:intron | 30.0% | |
| CATTGAATGAATGATGTATG+TGG | - | chr4.3:40754725-40754744 | None:intergenic | 30.0% | |
| GTGATATATTTGCCTCTTAT+CGG | + | chr4.3:40755928-40755947 | MS.gene021047:intron | 30.0% | |
| GTTTATGTGGACAATACTTA+TGG | + | chr4.3:40755789-40755808 | MS.gene021047:intron | 30.0% | |
| TGATATATTTGCCTCTTATC+GGG | + | chr4.3:40755929-40755948 | MS.gene021047:intron | 30.0% | |
| TTCTTGCTTATAATAGTGAC+CGG | - | chr4.3:40754633-40754652 | None:intergenic | 30.0% | |
| TTGCGTTCAAAAAAGAAGAA+AGG | - | chr4.3:40754287-40754306 | None:intergenic | 30.0% | |
| ! | TTTAATGGTACCACATTTTG+TGG | - | chr4.3:40755738-40755757 | None:intergenic | 30.0% |
| !! | GTGCAAACTTTTTGTTTACT+AGG | + | chr4.3:40755994-40756013 | MS.gene021047:intron | 30.0% |
| AAAACATGTATGTACGTGCT+CGG | - | chr4.3:40756027-40756046 | None:intergenic | 35.0% | |
| AAGTTAAAACTCCCGATAAG+AGG | - | chr4.3:40755943-40755962 | None:intergenic | 35.0% | |
| AATTATAATTGTGGGGACTG+GGG | + | chr4.3:40755837-40755856 | MS.gene021047:intron | 35.0% | |
| ACAACTTCACCAACAAAGAT+TGG | - | chr4.3:40756061-40756080 | None:intergenic | 35.0% | |
| ACAATTATAATTGTGGGGAC+TGG | + | chr4.3:40755835-40755854 | MS.gene021047:intron | 35.0% | |
| AGAAACAAAAGACAGCATTG+AGG | + | chr4.3:40754896-40754915 | MS.gene021047:CDS | 35.0% | |
| ATATCACCTATGCTCCAATA+AGG | - | chr4.3:40755915-40755934 | None:intergenic | 35.0% | |
| CAACCATTCATGAAAAGTCA+AGG | - | chr4.3:40756144-40756163 | None:intergenic | 35.0% | |
| CAATTATAATTGTGGGGACT+GGG | + | chr4.3:40755836-40755855 | MS.gene021047:intron | 35.0% | |
| CTAATAGCTCTTGTCTTCTT+GGG | - | chr4.3:40754964-40754983 | None:intergenic | 35.0% | |
| GCATTGAGGGAAGTTTATAA+GGG | + | chr4.3:40754910-40754929 | MS.gene021047:CDS | 35.0% | |
| GTAAGTGTTTCTCTCTATGA+AGG | + | chr4.3:40755028-40755047 | MS.gene021047:intron | 35.0% | |
| GTTAATTTAAATACGCGGCT+GGG | + | chr4.3:40754519-40754538 | MS.gene021047:intron | 35.0% | |
| TAATGGCATACTTTCTCACT+GGG | - | chr4.3:40756276-40756295 | None:intergenic | 35.0% | |
| TATAGATGATATACTCCCTC+CGG | + | chr4.3:40754611-40754630 | MS.gene021047:intron | 35.0% | |
| TCTAATAGCTCTTGTCTTCT+TGG | - | chr4.3:40754965-40754984 | None:intergenic | 35.0% | |
| TGTTAATTTAAATACGCGGC+TGG | + | chr4.3:40754518-40754537 | MS.gene021047:intron | 35.0% | |
| TTAATGGCATACTTTCTCAC+TGG | - | chr4.3:40756277-40756296 | None:intergenic | 35.0% | |
| TTATTCTTGGTAAGCTGAGA+CGG | + | chr4.3:40755092-40755111 | MS.gene021047:intron | 35.0% | |
| TTTGAACGCAATAGCTATCA+AGG | + | chr4.3:40754296-40754315 | MS.gene021047:intron | 35.0% | |
| ! | ACATCTTGGAAAGCTTGTTT+GGG | - | chr4.3:40754425-40754444 | None:intergenic | 35.0% |
| ! | AGCATTGAGGGAAGTTTATA+AGG | + | chr4.3:40754909-40754928 | MS.gene021047:CDS | 35.0% |
| ! | AGTGAGAAAGTATGCCATTA+AGG | + | chr4.3:40756276-40756295 | MS.gene021047:CDS | 35.0% |
| ! | GAAACAAAAGACAGCATTGA+GGG | + | chr4.3:40754897-40754916 | MS.gene021047:CDS | 35.0% |
| ! | TACATCTTGGAAAGCTTGTT+TGG | - | chr4.3:40754426-40754445 | None:intergenic | 35.0% |
| !! | CTTAATCTTTGACTTGCTGA+AGG | - | chr4.3:40755694-40755713 | None:intergenic | 35.0% |
| !! | GTAAGTTGGTCCTCATTTAA+TGG | - | chr4.3:40755753-40755772 | None:intergenic | 35.0% |
| !!! | CTTTTAAGGCCAATCTTTGT+TGG | + | chr4.3:40756049-40756068 | MS.gene021047:intron | 35.0% |
| AAACATGTATGTACGTGCTC+GGG | - | chr4.3:40756026-40756045 | None:intergenic | 40.0% | |
| AGATTAAGCTTGAACCTGCA+TGG | + | chr4.3:40755706-40755725 | MS.gene021047:intron | 40.0% | |
| AGCGGAAAATGCATACATCT+TGG | - | chr4.3:40754439-40754458 | None:intergenic | 40.0% | |
| ATATTGTCCATCGCAGATGA+CGG | - | chr4.3:40755497-40755516 | None:intergenic | 40.0% | |
| ATCTGCGATGGACAATATTG+TGG | + | chr4.3:40755499-40755518 | MS.gene021047:intron | 40.0% | |
| ATGGTTTAGGCCACAAAATG+TGG | + | chr4.3:40755725-40755744 | MS.gene021047:intron | 40.0% | |
| CTATCAAGGTTTATGAGCTG+AGG | + | chr4.3:40754310-40754329 | MS.gene021047:CDS | 40.0% | |
| GACAACACTTTGTACTACAG+CGG | - | chr4.3:40755415-40755434 | None:intergenic | 40.0% | |
| GTGGAAGTAATAGAGGACTT+CGG | - | chr4.3:40755574-40755593 | None:intergenic | 40.0% | |
| GTTATTGTTTGGATGCAGCA+AGG | + | chr4.3:40754831-40754850 | MS.gene021047:intron | 40.0% | |
| TATTCTTGGTAAGCTGAGAC+GGG | + | chr4.3:40755093-40755112 | MS.gene021047:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr4.3:40754765-40754784 | MS.gene021047:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr4.3:40754784-40754765 | None:intergenic | 40.0% | |
| TGGAAGTAATAGAGGACTTC+GGG | - | chr4.3:40755573-40755592 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr4.3:40754764-40754783 | MS.gene021047:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr4.3:40754783-40754764 | None:intergenic | 40.0% | |
| ! | AATGTGCCTTATTGGAGCAT+AGG | + | chr4.3:40755906-40755925 | MS.gene021047:intron | 40.0% |
| ! | CATCTTGGAAAGCTTGTTTG+GGG | - | chr4.3:40754424-40754443 | None:intergenic | 40.0% |
| ! | GTGCCTTGACTTTTCATGAA+TGG | + | chr4.3:40756138-40756157 | MS.gene021047:intron | 40.0% |
| ! | GTTGTAGAGTTTTGCTGCAA+TGG | + | chr4.3:40755871-40755890 | MS.gene021047:intron | 40.0% |
| !! | TTTGACTTGCTGAAGGAATG+TGG | - | chr4.3:40755687-40755706 | None:intergenic | 40.0% |
| AAGTAATAGAGGACTTCGGG+AGG | - | chr4.3:40755570-40755589 | None:intergenic | 45.0% | |
| ACTTCCCTAAGCTTGGAATG+TGG | + | chr4.3:40755639-40755658 | MS.gene021047:intron | 45.0% | |
| AGCTTGAACCTGCATGGTTT+AGG | + | chr4.3:40755712-40755731 | MS.gene021047:intron | 45.0% | |
| AGTGTTGTCAGTCGCTATTG+CGG | + | chr4.3:40755426-40755445 | MS.gene021047:intron | 45.0% | |
| ATCTGCCACATTCCAAGCTT+AGG | - | chr4.3:40755647-40755666 | None:intergenic | 45.0% | |
| CATGTACCTGATGCTTAGTG+AGG | - | chr4.3:40754993-40755012 | None:intergenic | 45.0% | |
| CGGATAGCAGAACAATACAC+AGG | - | chr4.3:40755395-40755414 | None:intergenic | 45.0% | |
| GGAGCAAGTGGAAGTAATAG+AGG | - | chr4.3:40755581-40755600 | None:intergenic | 45.0% | |
| TAGCTCTTGTCTTCTTGGGA+CGG | - | chr4.3:40754960-40754979 | None:intergenic | 45.0% | |
| TCTGCCACATTCCAAGCTTA+GGG | - | chr4.3:40755646-40755665 | None:intergenic | 45.0% | |
| TTGGATGCAGCAAGGTTGTT+CGG | + | chr4.3:40754839-40754858 | MS.gene021047:intron | 45.0% | |
| ! | CTATTTTCCGTCATCTGCGA+TGG | + | chr4.3:40755487-40755506 | MS.gene021047:intron | 45.0% |
| ! | TTTTGTGGCCTAAACCATGC+AGG | - | chr4.3:40755723-40755742 | None:intergenic | 45.0% |
| !! | TCGCAGATGACGGAAAATAG+CGG | - | chr4.3:40755487-40755506 | None:intergenic | 45.0% |
| !! | TTAGGGAAGTGTCTGTCTCA+AGG | - | chr4.3:40755629-40755648 | None:intergenic | 45.0% |
| AAGACGCCTCACTAAGCATC+AGG | + | chr4.3:40754984-40755003 | MS.gene021047:CDS | 50.0% | |
| ATAGAGGACTTCGGGAGGAA+AGG | - | chr4.3:40755565-40755584 | None:intergenic | 50.0% | |
| ATTGTGGGGACTGGGGAAAT+TGG | + | chr4.3:40755844-40755863 | MS.gene021047:intron | 50.0% | |
| GACAGACACTTCCCTAAGCT+TGG | + | chr4.3:40755632-40755651 | MS.gene021047:intron | 50.0% | |
| GACAGAGCGTGAGAAGAAGA+AGG | + | chr4.3:40756240-40756259 | MS.gene021047:CDS | 50.0% | |
| GGAAAAGAGGAAGGAGCAAG+TGG | - | chr4.3:40755593-40755612 | None:intergenic | 50.0% | |
| TAGAGGACTTCGGGAGGAAA+GGG | - | chr4.3:40755564-40755583 | None:intergenic | 50.0% | |
| TTCTTGGGACGGAGATCCAA+AGG | - | chr4.3:40754949-40754968 | None:intergenic | 50.0% | |
| ! | GAAGTGTCTGTCTCAAGGAG+GGG | - | chr4.3:40755624-40755643 | None:intergenic | 50.0% |
| ! | TAGCAACAACTTGCTCCCTC+CGG | - | chr4.3:40754783-40754802 | None:intergenic | 50.0% |
| !! | GGAAGTGTCTGTCTCAAGGA+GGG | - | chr4.3:40755625-40755644 | None:intergenic | 50.0% |
| !! | GGGCAAGAAGTACTTGCCTT+TGG | + | chr4.3:40754930-40754949 | MS.gene021047:CDS | 50.0% |
| GAGGGCTGTGGAAAAGAGGA+AGG | - | chr4.3:40755602-40755621 | None:intergenic | 55.0% | |
| TGTCTGTCTCAAGGAGGGGA+GGG | - | chr4.3:40755620-40755639 | None:intergenic | 55.0% | |
| TTCGGGAGGAAAGGGCTTTG+CGG | - | chr4.3:40755556-40755575 | None:intergenic | 55.0% | |
| !! | GCTATTGCGGTGCTATAGCG+TGG | + | chr4.3:40755439-40755458 | MS.gene021047:intron | 55.0% |
| !! | GGGAAGTGTCTGTCTCAAGG+AGG | - | chr4.3:40755626-40755645 | None:intergenic | 55.0% |
| AGGGGAGGGCTGTGGAAAAG+AGG | - | chr4.3:40755606-40755625 | None:intergenic | 60.0% | |
| CTTCGCGTCGCGAAAGTCAC+CGG | + | chr4.3:40754393-40754412 | MS.gene021047:CDS | 60.0% | |
| GTGTCTGTCTCAAGGAGGGG+AGG | - | chr4.3:40755621-40755640 | None:intergenic | 60.0% | |
| !! | AAGCTTGTTTGGGGCACCGC+CGG | - | chr4.3:40754415-40754434 | None:intergenic | 60.0% |
| TCTCAAGGAGGGGAGGGCTG+TGG | - | chr4.3:40755614-40755633 | None:intergenic | 65.0% | |
| CGCGTCGCGAAAGTCACCGG+CGG | + | chr4.3:40754396-40754415 | MS.gene021047:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 40754196 | 40756303 | 40754196 | ID=MS.gene021047 |
| chr4.3 | mRNA | 40754196 | 40756303 | 40754196 | ID=MS.gene021047.t1;Parent=MS.gene021047 |
| chr4.3 | exon | 40754196 | 40754199 | 40754196 | ID=MS.gene021047.t1.exon1;Parent=MS.gene021047.t1 |
| chr4.3 | CDS | 40754196 | 40754199 | 40754196 | ID=cds.MS.gene021047.t1;Parent=MS.gene021047.t1 |
| chr4.3 | exon | 40754310 | 40754442 | 40754310 | ID=MS.gene021047.t1.exon2;Parent=MS.gene021047.t1 |
| chr4.3 | CDS | 40754310 | 40754442 | 40754310 | ID=cds.MS.gene021047.t1;Parent=MS.gene021047.t1 |
| chr4.3 | exon | 40754849 | 40755005 | 40754849 | ID=MS.gene021047.t1.exon3;Parent=MS.gene021047.t1 |
| chr4.3 | CDS | 40754849 | 40755005 | 40754849 | ID=cds.MS.gene021047.t1;Parent=MS.gene021047.t1 |
| chr4.3 | exon | 40756229 | 40756303 | 40756229 | ID=MS.gene021047.t1.exon4;Parent=MS.gene021047.t1 |
| chr4.3 | CDS | 40756229 | 40756303 | 40756229 | ID=cds.MS.gene021047.t1;Parent=MS.gene021047.t1 |
| Gene Sequence |
| Protein sequence |
