Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75171.t1 | XP_013470470.1 | 98.3 | 121 | 2 | 0 | 48 | 168 | 1 | 121 | 1.30E-52 | 216.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75171.t1 | Q9M5L0 | 92.4 | 119 | 9 | 0 | 49 | 167 | 4 | 122 | 2.3e-50 | 199.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75171.t1 | I3T2Q3 | 98.3 | 121 | 2 | 0 | 48 | 168 | 1 | 121 | 9.1e-53 | 216.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene75171 | 0.843056 | 1.77E-58 | -1.69E-46 |
| MS.gene050290 | MS.gene75171 | 0.830243 | 3.28E-55 | -1.69E-46 |
| MS.gene050320 | MS.gene75171 | 0.853372 | 2.50E-61 | -1.69E-46 |
| MS.gene050752 | MS.gene75171 | 0.811511 | 6.75E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene75171 | 0.844813 | 5.99E-59 | -1.69E-46 |
| MS.gene050916 | MS.gene75171 | 0.802877 | 4.55E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene75171 | 0.832543 | 8.90E-56 | -1.69E-46 |
| MS.gene051330 | MS.gene75171 | 0.820954 | 5.22E-53 | -1.69E-46 |
| MS.gene051687 | MS.gene75171 | 0.816612 | 5.06E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene75171 | 0.914341 | 2.15E-84 | -1.69E-46 |
| MS.gene051748 | MS.gene75171 | 0.892171 | 2.03E-74 | -1.69E-46 |
| MS.gene051756 | MS.gene75171 | 0.818346 | 2.06E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene75171 | 0.884529 | 1.77E-71 | -1.69E-46 |
| MS.gene051903 | MS.gene75171 | 0.914582 | 1.62E-84 | -1.69E-46 |
| MS.gene052947 | MS.gene75171 | 0.871102 | 8.82E-67 | -1.69E-46 |
| MS.gene053109 | MS.gene75171 | 0.835151 | 1.98E-56 | -1.69E-46 |
| MS.gene053952 | MS.gene75171 | 0.865099 | 7.55E-65 | -1.69E-46 |
| MS.gene054403 | MS.gene75171 | 0.813161 | 2.94E-51 | -1.69E-46 |
| MS.gene054937 | MS.gene75171 | 0.871945 | 4.64E-67 | -1.69E-46 |
| MS.gene055424 | MS.gene75171 | 0.809828 | 1.56E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene75171 | 0.826239 | 3.03E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene75171 | 0.906204 | 1.91E-80 | -1.69E-46 |
| MS.gene056091 | MS.gene75171 | 0.801803 | 7.58E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene75171 | 0.844145 | 9.06E-59 | -1.69E-46 |
| MS.gene056896 | MS.gene75171 | 0.805165 | 1.52E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene75171 | 0.890658 | 8.08E-74 | -1.69E-46 |
| MS.gene057234 | MS.gene75171 | 0.816641 | 4.98E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene75171 | 0.804251 | 2.36E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene75171 | 0.810365 | 1.20E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene75171 | 0.804769 | 1.84E-49 | -1.69E-46 |
| MS.gene058354 | MS.gene75171 | 0.819658 | 1.03E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene75171 | 0.809721 | 1.64E-50 | -1.69E-46 |
| MS.gene059227 | MS.gene75171 | 0.819968 | 8.79E-53 | -1.69E-46 |
| MS.gene059726 | MS.gene75171 | 0.847188 | 1.35E-59 | -1.69E-46 |
| MS.gene06001 | MS.gene75171 | 0.90646 | 1.45E-80 | -1.69E-46 |
| MS.gene06011 | MS.gene75171 | 0.812709 | 3.70E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene75171 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene061145 | MS.gene75171 | 0.809178 | 2.15E-50 | -1.69E-46 |
| MS.gene06118 | MS.gene75171 | 0.827855 | 1.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75171 | MS.gene066455 | PPI |
| MS.gene75171 | MS.gene029109 | PPI |
| MS.gene75171 | MS.gene036455 | PPI |
| MS.gene75171 | MS.gene074269 | PPI |
| MS.gene021047 | MS.gene75171 | PPI |
| MS.gene75171 | MS.gene67378 | PPI |
| MS.gene75171 | MS.gene021047 | PPI |
| MS.gene90833 | MS.gene75171 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75171.t1 | MTR_1g115545 | 98.347 | 121 | 2 | 0 | 48 | 168 | 1 | 121 | 2.45e-80 | 234 |
| MS.gene75171.t1 | MTR_1g067490 | 92.500 | 120 | 9 | 0 | 49 | 168 | 3 | 122 | 2.27e-74 | 219 |
| MS.gene75171.t1 | MTR_4g062410 | 91.667 | 120 | 10 | 0 | 49 | 168 | 4 | 123 | 3.01e-72 | 213 |
| MS.gene75171.t1 | MTR_7g080090 | 90.000 | 120 | 12 | 0 | 49 | 168 | 4 | 123 | 9.20e-71 | 209 |
| MS.gene75171.t1 | MTR_4g072410 | 85.124 | 121 | 18 | 0 | 48 | 168 | 1 | 121 | 4.29e-67 | 200 |
| MS.gene75171.t1 | MTR_1g105880 | 72.222 | 90 | 14 | 1 | 56 | 145 | 2 | 80 | 5.18e-35 | 117 |
| MS.gene75171.t1 | MTR_5g045540 | 88.571 | 35 | 4 | 0 | 112 | 146 | 2 | 36 | 1.19e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75171.t1 | AT2G39390 | 88.235 | 119 | 14 | 0 | 49 | 167 | 4 | 122 | 1.11e-69 | 207 |
| MS.gene75171.t1 | AT3G09500 | 87.395 | 119 | 15 | 0 | 49 | 167 | 4 | 122 | 2.16e-68 | 204 |
| MS.gene75171.t1 | AT5G02610 | 87.395 | 119 | 15 | 0 | 49 | 167 | 4 | 122 | 5.31e-68 | 202 |
| MS.gene75171.t1 | AT3G55170 | 85.714 | 119 | 17 | 0 | 49 | 167 | 4 | 122 | 8.57e-67 | 199 |
| MS.gene75171.t1 | AT3G55170 | 85.714 | 119 | 17 | 0 | 49 | 167 | 4 | 122 | 8.57e-67 | 199 |
| MS.gene75171.t1 | AT3G55170 | 85.714 | 119 | 17 | 0 | 49 | 167 | 4 | 122 | 8.57e-67 | 199 |
| MS.gene75171.t1 | AT5G02610 | 73.239 | 142 | 15 | 1 | 49 | 167 | 4 | 145 | 1.97e-62 | 189 |
| MS.gene75171.t1 | AT3G55170 | 86.458 | 96 | 13 | 0 | 49 | 144 | 4 | 99 | 1.30e-51 | 160 |
| MS.gene75171.t1 | AT3G55170 | 86.458 | 96 | 13 | 0 | 49 | 144 | 4 | 99 | 1.30e-51 | 160 |
Find 37 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATGGCCCTGGTCTTCTT+TGG | 0.171363 | 1.1:+81270812 | None:intergenic |
| TCAAAGCAGCCTTCTGCTTC+TGG | 0.210134 | 1.1:+81270879 | None:intergenic |
| TTGATAGCATATTTCCTCAT+TGG | 0.349490 | 1.1:+81269939 | None:intergenic |
| GAATGGCCCTGGTCTTCTTT+GGG | 0.358511 | 1.1:+81270813 | None:intergenic |
| GACCGAGAGGGAGAAGAAAA+AGG | 0.368054 | 1.1:-81269973 | MS.gene75171:CDS |
| TGATAGCATATTTCCTCATT+GGG | 0.379576 | 1.1:+81269940 | None:intergenic |
| GAAGCAGAAGGCTGCTTTGA+GGG | 0.418273 | 1.1:-81270876 | MS.gene75171:CDS |
| CAAAGCAGCCTTCTGCTTCT+GGG | 0.419055 | 1.1:+81270880 | None:intergenic |
| GAGCCTTCTGCGAATGGCCC+TGG | 0.419374 | 1.1:+81270802 | None:intergenic |
| CTCCGTGTTGCTAAGGTCAC+TGG | 0.447113 | 1.1:-81271283 | MS.gene75171:CDS |
| GTAAAGCAAGTTCAGCTTTG+AGG | 0.452854 | 1.1:+81271305 | None:intergenic |
| GACGTGCATATATTAGAAGC+TGG | 0.462293 | 1.1:-81271672 | MS.gene75171:CDS |
| CTTGGTGAGCCTTCTGCGAA+TGG | 0.472202 | 1.1:+81270796 | None:intergenic |
| AATGAGGAAATATGCTATCA+AGG | 0.472756 | 1.1:-81269937 | MS.gene75171:CDS |
| TGCTTTACTCCGTGTTGCTA+AGG | 0.473685 | 1.1:-81271290 | MS.gene75171:CDS |
| GAAATATGCTATCAAGGCAT+AGG | 0.504384 | 1.1:-81269931 | None:intergenic |
| AGGGTTTAATACCTGGTGCT+TGG | 0.515451 | 1.1:+81270778 | None:intergenic |
| CAGTGAAGGTTCACGAGTTG+AGG | 0.518240 | 1.1:-81271366 | MS.gene75171:CDS |
| ATCTCCGCCCAAAGAAGACC+AGG | 0.531518 | 1.1:-81270820 | MS.gene75171:CDS |
| CAGAAGGCTCACCAAGCACC+AGG | 0.535404 | 1.1:-81270789 | MS.gene75171:intron |
| CTGCAGAAGAATTCAACAAT+GGG | 0.536601 | 1.1:-81271484 | MS.gene75171:intron |
| CACGTCTAAAACTACTTCCA+CGG | 0.551605 | 1.1:+81271689 | None:intergenic |
| TTCTTTGGGCGGAGATCAAG+TGG | 0.553377 | 1.1:+81270827 | None:intergenic |
| ACGTGCATATATTAGAAGCT+GGG | 0.563778 | 1.1:-81271671 | MS.gene75171:CDS |
| GGTGAGGTTGTCGATTGCTC+AGG | 0.570678 | 1.1:-81270918 | MS.gene75171:CDS |
| TGGCCCTGGTCTTCTTTGGG+CGG | 0.571866 | 1.1:+81270816 | None:intergenic |
| AAATATGCTATCAAGGCATA+GGG | 0.572355 | 1.1:-81269930 | None:intergenic |
| AGAAGCAGAAGGCTGCTTTG+AGG | 0.576045 | 1.1:-81270877 | MS.gene75171:CDS |
| AGACCAGGGCCATTCGCAGA+AGG | 0.591558 | 1.1:-81270805 | MS.gene75171:CDS |
| AGGAGACATATTTCCCAATG+AGG | 0.613250 | 1.1:-81269953 | MS.gene75171:CDS |
| AGTGATTTCCCAGAAGCAGA+AGG | 0.617415 | 1.1:-81270888 | MS.gene75171:CDS |
| CACCAGTGACCTTAGCAACA+CGG | 0.624056 | 1.1:+81271281 | None:intergenic |
| GCTGCAGAAGAATTCAACAA+TGG | 0.630743 | 1.1:-81271485 | MS.gene75171:CDS |
| GTCTTCGCTGAAGACCGAGA+GGG | 0.684722 | 1.1:-81269985 | MS.gene75171:CDS |
| CGTGTTGCTAAGGTCACTGG+TGG | 0.692805 | 1.1:-81271280 | MS.gene75171:CDS |
| TCTCCGCCCAAAGAAGACCA+GGG | 0.718890 | 1.1:-81270819 | MS.gene75171:CDS |
| AGTCTTCGCTGAAGACCGAG+AGG | 0.727322 | 1.1:-81269986 | MS.gene75171:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTGATTATTTTATTT+GGG | - | chr1.1:81270679-81270698 | MS.gene75171:intron | 10.0% |
| !!! | TTGAATTTTTATTTACATTT+TGG | + | chr1.1:81270397-81270416 | None:intergenic | 10.0% |
| !!! | TTGTTTTTGATTATTTTATT+TGG | - | chr1.1:81270678-81270697 | MS.gene75171:intron | 10.0% |
| !! | AAATTTCAGTTTGTATATAT+AGG | + | chr1.1:81271551-81271570 | None:intergenic | 15.0% |
| !! | AACATGAATTATACATTAAA+AGG | + | chr1.1:81270879-81270898 | None:intergenic | 15.0% |
| !! | ACATGAATTATACATTAAAA+GGG | + | chr1.1:81270878-81270897 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTCTAAAATCAA+AGG | - | chr1.1:81271222-81271241 | MS.gene75171:intron | 15.0% |
| !! | GAATGAAATCTTAAATAATG+AGG | - | chr1.1:81271123-81271142 | MS.gene75171:intron | 20.0% |
| !! | TAGTGAATTTCATGTAAAAA+TGG | + | chr1.1:81271338-81271357 | None:intergenic | 20.0% |
| !! | TTTGTTTAGAAGATAATAAC+TGG | - | chr1.1:81271386-81271405 | MS.gene75171:intron | 20.0% |
| !!! | ACATTCAATTTTATGCTTTA+AGG | + | chr1.1:81271309-81271328 | None:intergenic | 20.0% |
| !!! | CTTTATTCTTTTATGTCAAT+TGG | - | chr1.1:81270418-81270437 | MS.gene75171:intron | 20.0% |
| !!! | GTATAAATATCGAAACTTTT+GGG | + | chr1.1:81270034-81270053 | None:intergenic | 20.0% |
| !!! | TGTATAAATATCGAAACTTT+TGG | + | chr1.1:81270035-81270054 | None:intergenic | 20.0% |
| !!! | TTGTTTGATTTCAGAAATTA+GGG | + | chr1.1:81270193-81270212 | None:intergenic | 20.0% |
| !!! | TTTGTTTGATTTCAGAAATT+AGG | + | chr1.1:81270194-81270213 | None:intergenic | 20.0% |
| ! | AACAATTTATCCTTCAGAAT+TGG | + | chr1.1:81270560-81270579 | None:intergenic | 25.0% |
| ! | CTTTCAAGGATAACATTTAA+TGG | + | chr1.1:81271266-81271285 | None:intergenic | 25.0% |
| ! | GATTGTGTGATGATTATAAT+GGG | - | chr1.1:81270600-81270619 | MS.gene75171:intron | 25.0% |
| ! | TGATTATTACTGTTCTTTCA+AGG | + | chr1.1:81271280-81271299 | None:intergenic | 25.0% |
| ! | TGATTGTGTGATGATTATAA+TGG | - | chr1.1:81270599-81270618 | MS.gene75171:intron | 25.0% |
| ! | TTAGAAGATAATAACTGGAT+TGG | - | chr1.1:81271391-81271410 | MS.gene75171:intron | 25.0% |
| AAAACAACCAATGGTGTAAA+AGG | + | chr1.1:81271440-81271459 | None:intergenic | 30.0% | |
| AATGAGGAAATATGCTATCA+AGG | - | chr1.1:81271697-81271716 | MS.gene75171:CDS | 30.0% | |
| ACATACAAGCAAAGAGAAAA+AGG | + | chr1.1:81271519-81271538 | None:intergenic | 30.0% | |
| AGGATAACATTTAATGGTGT+AGG | + | chr1.1:81271260-81271279 | None:intergenic | 30.0% | |
| CATTAAAAGGGTTTAATACC+TGG | + | chr1.1:81270866-81270885 | None:intergenic | 30.0% | |
| CTTACTACAAAATCAATGAG+AGG | + | chr1.1:81270076-81270095 | None:intergenic | 30.0% | |
| GAAGGATAAATTGTTCCTTT+CGG | - | chr1.1:81270565-81270584 | MS.gene75171:intron | 30.0% | |
| TATCCTTCAGAATTGGTAAA+TGG | + | chr1.1:81270553-81270572 | None:intergenic | 30.0% | |
| TGATAGCATATTTCCTCATT+GGG | + | chr1.1:81271697-81271716 | None:intergenic | 30.0% | |
| TTTCGTCTCAAGTACTATTT+AGG | - | chr1.1:81271091-81271110 | MS.gene75171:intron | 30.0% | |
| ! | ATTATAGCCTTTTACACCAT+TGG | - | chr1.1:81271430-81271449 | MS.gene75171:intron | 30.0% |
| ! | GATCTGTATCATTTGGAATA+AGG | + | chr1.1:81271160-81271179 | None:intergenic | 30.0% |
| ! | TTGATAGCATATTTCCTCAT+TGG | + | chr1.1:81271698-81271717 | None:intergenic | 30.0% |
| ! | TTTGATTTCAGAAATTAGGG+TGG | + | chr1.1:81270190-81270209 | None:intergenic | 30.0% |
| !! | GCACGATTGTTCTAAAAATA+AGG | + | chr1.1:81270480-81270499 | None:intergenic | 30.0% |
| !! | TAACTGGATTGGTTTATTGT+TGG | - | chr1.1:81271402-81271421 | MS.gene75171:intron | 30.0% |
| !! | TTTATTTGGGTTTTGCAGTA+AGG | - | chr1.1:81270692-81270711 | MS.gene75171:intron | 30.0% |
| !! | TTTTCAACCTGATTTGTCTT+GGG | - | chr1.1:81271456-81271475 | MS.gene75171:intron | 30.0% |
| !!! | AATATCGAAACTTTTGGGTT+TGG | + | chr1.1:81270029-81270048 | None:intergenic | 30.0% |
| !!! | ATATCGAAACTTTTGGGTTT+GGG | + | chr1.1:81270028-81270047 | None:intergenic | 30.0% |
| !!! | GCCATAGTTTGTTTTCAAAT+GGG | + | chr1.1:81270006-81270025 | None:intergenic | 30.0% |
| !!! | GTTTTTGTTTTGTGACTGTA+AGG | - | chr1.1:81270625-81270644 | MS.gene75171:intron | 30.0% |
| ACGTGCATATATTAGAAGCT+GGG | - | chr1.1:81269963-81269982 | MS.gene75171:CDS | 35.0% | |
| AGCAAAAACCACAGATACAT+TGG | + | chr1.1:81270932-81270951 | None:intergenic | 35.0% | |
| ATACACCAATCACCAATTGA+TGG | + | chr1.1:81271024-81271043 | None:intergenic | 35.0% | |
| CTGCAGAAGAATTCAACAAT+GGG | - | chr1.1:81270150-81270169 | MS.gene75171:intron | 35.0% | |
| GAAAAACAAAGCTGATCTGT+TGG | - | chr1.1:81270293-81270312 | MS.gene75171:intron | 35.0% | |
| GCAAAAACCACAGATACATT+GGG | + | chr1.1:81270931-81270950 | None:intergenic | 35.0% | |
| GCAAAGAGAAAAAGGTTACA+AGG | + | chr1.1:81271511-81271530 | None:intergenic | 35.0% | |
| GCCCATTTGAAAACAAACTA+TGG | - | chr1.1:81270002-81270021 | MS.gene75171:intron | 35.0% | |
| TATTGTGACCATCCATCAAT+TGG | - | chr1.1:81271009-81271028 | MS.gene75171:intron | 35.0% | |
| TCAGAAATTAGGGTGGTTTA+GGG | + | chr1.1:81270183-81270202 | None:intergenic | 35.0% | |
| TGAATATCCCAAGACAAATC+AGG | + | chr1.1:81271466-81271485 | None:intergenic | 35.0% | |
| TGCTATGATCGTAATCGTAA+AGG | - | chr1.1:81270441-81270460 | MS.gene75171:intron | 35.0% | |
| TTCAAGCAGAACAGTATGTT+TGG | - | chr1.1:81271591-81271610 | MS.gene75171:intron | 35.0% | |
| TTCAGAAATTAGGGTGGTTT+AGG | + | chr1.1:81270184-81270203 | None:intergenic | 35.0% | |
| ! | AATTGTTCCTTTCGGTGTAA+TGG | - | chr1.1:81270573-81270592 | MS.gene75171:intron | 35.0% |
| ! | GATTTTGTAGTAAGCTGCTA+GGG | - | chr1.1:81270082-81270101 | MS.gene75171:intron | 35.0% |
| ! | TAGAAGCTGGGAATTTTGAA+AGG | - | chr1.1:81269975-81269994 | MS.gene75171:CDS | 35.0% |
| ! | TGATTTTGTAGTAAGCTGCT+AGG | - | chr1.1:81270081-81270100 | MS.gene75171:intron | 35.0% |
| !! | ATCAGGTTGAAAACAACCAA+TGG | + | chr1.1:81271449-81271468 | None:intergenic | 35.0% |
| !! | GTTTTCAACCTGATTTGTCT+TGG | - | chr1.1:81271455-81271474 | MS.gene75171:intron | 35.0% |
| !! | TACATTTTGGAGAGCTTGTT+GGG | + | chr1.1:81270384-81270403 | None:intergenic | 35.0% |
| !! | TTACATTTTGGAGAGCTTGT+TGG | + | chr1.1:81270385-81270404 | None:intergenic | 35.0% |
| !!! | GGCCATAGTTTGTTTTCAAA+TGG | + | chr1.1:81270007-81270026 | None:intergenic | 35.0% |
| !!! | TGTGTTTTGATTTGCAGTGA+AGG | - | chr1.1:81270254-81270273 | MS.gene75171:intron | 35.0% |
| !!! | TTTGTTTTGTGACTGTAAGG+TGG | - | chr1.1:81270628-81270647 | MS.gene75171:intron | 35.0% |
| AAAACCACAGATACATTGGG+AGG | + | chr1.1:81270928-81270947 | None:intergenic | 40.0% | |
| ACCAATCACCAATTGATGGA+TGG | + | chr1.1:81271020-81271039 | None:intergenic | 40.0% | |
| AGGAGACATATTTCCCAATG+AGG | - | chr1.1:81271681-81271700 | MS.gene75171:CDS | 40.0% | |
| ATCAAAGCCATTACACCGAA+AGG | + | chr1.1:81270583-81270602 | None:intergenic | 40.0% | |
| ATGAAATTCACTACACGACC+AGG | - | chr1.1:81271345-81271364 | MS.gene75171:CDS | 40.0% | |
| CAGAAAATTGTACAGCAACC+TGG | + | chr1.1:81271366-81271385 | None:intergenic | 40.0% | |
| CGTCCATTTACCAATTCTGA+AGG | - | chr1.1:81270547-81270566 | MS.gene75171:intron | 40.0% | |
| GACGTGCATATATTAGAAGC+TGG | - | chr1.1:81269962-81269981 | MS.gene75171:CDS | 40.0% | |
| GCTGCAGAAGAATTCAACAA+TGG | - | chr1.1:81270149-81270168 | MS.gene75171:intron | 40.0% | |
| GTAAAGCAAGTTCAGCTTTG+AGG | + | chr1.1:81270332-81270351 | None:intergenic | 40.0% | |
| ! | ACCATCCATCAATTGGTGAT+TGG | - | chr1.1:81271016-81271035 | MS.gene75171:intron | 40.0% |
| ! | CACGTCTAAAACTACTTCCA+CGG | + | chr1.1:81269948-81269967 | None:intergenic | 40.0% |
| !! | ATTTGGGTTTTGCAGTAAGG+TGG | - | chr1.1:81270695-81270714 | MS.gene75171:intron | 40.0% |
| !! | GCTGGGAATTTTGAAAGGTA+AGG | - | chr1.1:81269980-81269999 | MS.gene75171:CDS | 40.0% |
| AGGGTTTAATACCTGGTGCT+TGG | + | chr1.1:81270859-81270878 | None:intergenic | 45.0% | |
| AGTGATTTCCCAGAAGCAGA+AGG | - | chr1.1:81270746-81270765 | MS.gene75171:intron | 45.0% | |
| ATACAGATCCTGCAGGTGTA+GGG | - | chr1.1:81271171-81271190 | MS.gene75171:intron | 45.0% | |
| CCAAATGATACAGATCCTGC+AGG | - | chr1.1:81271164-81271183 | MS.gene75171:intron | 45.0% | |
| CCTGCAGGATCTGTATCATT+TGG | + | chr1.1:81271167-81271186 | None:intergenic | 45.0% | |
| TACACCTCCCAATGTATCTG+TGG | - | chr1.1:81270921-81270940 | MS.gene75171:CDS | 45.0% | |
| ! | CTCCTTTTTCTTCTCCCTCT+CGG | + | chr1.1:81271666-81271685 | None:intergenic | 45.0% |
| ! | TGCTTTACTCCGTGTTGCTA+AGG | - | chr1.1:81270344-81270363 | MS.gene75171:intron | 45.0% |
| CAAAGCAGCCTTCTGCTTCT+GGG | + | chr1.1:81270757-81270776 | None:intergenic | 50.0% | |
| CACCAGTGACCTTAGCAACA+CGG | + | chr1.1:81270356-81270375 | None:intergenic | 50.0% | |
| CAGTGAAGGTTCACGAGTTG+AGG | - | chr1.1:81270268-81270287 | MS.gene75171:intron | 50.0% | |
| GACCGAGAGGGAGAAGAAAA+AGG | - | chr1.1:81271661-81271680 | MS.gene75171:CDS | 50.0% | |
| GATACAGATCCTGCAGGTGT+AGG | - | chr1.1:81271170-81271189 | MS.gene75171:intron | 50.0% | |
| TCAAAGCAGCCTTCTGCTTC+TGG | + | chr1.1:81270758-81270777 | None:intergenic | 50.0% | |
| TTCTTTGGGCGGAGATCAAG+TGG | + | chr1.1:81270810-81270829 | None:intergenic | 50.0% | |
| ! | AGAAGCAGAAGGCTGCTTTG+AGG | - | chr1.1:81270757-81270776 | MS.gene75171:intron | 50.0% |
| ! | GAAGCAGAAGGCTGCTTTGA+GGG | - | chr1.1:81270758-81270777 | MS.gene75171:intron | 50.0% |
| ! | GAATGGCCCTGGTCTTCTTT+GGG | + | chr1.1:81270824-81270843 | None:intergenic | 50.0% |
| ! | GGTTTTGCAGTAAGGTGGTG+AGG | - | chr1.1:81270700-81270719 | MS.gene75171:intron | 50.0% |
| AGTCTTCGCTGAAGACCGAG+AGG | - | chr1.1:81271648-81271667 | MS.gene75171:intron | 55.0% | |
| ATCCTGCAGGTGTAGGGAGA+AGG | - | chr1.1:81271177-81271196 | MS.gene75171:intron | 55.0% | |
| ATCCTTCTCCCTACACCTGC+AGG | + | chr1.1:81271182-81271201 | None:intergenic | 55.0% | |
| ATCTCCGCCCAAAGAAGACC+AGG | - | chr1.1:81270814-81270833 | MS.gene75171:CDS | 55.0% | |
| CACACACACACACACGCAAG+AGG | - | chr1.1:81270119-81270138 | MS.gene75171:intron | 55.0% | |
| CTTGGTGAGCCTTCTGCGAA+TGG | + | chr1.1:81270841-81270860 | None:intergenic | 55.0% | |
| GTCTTCGCTGAAGACCGAGA+GGG | - | chr1.1:81271649-81271668 | MS.gene75171:intron | 55.0% | |
| TCTCCGCCCAAAGAAGACCA+GGG | - | chr1.1:81270815-81270834 | MS.gene75171:CDS | 55.0% | |
| ! | CGAATGGCCCTGGTCTTCTT+TGG | + | chr1.1:81270825-81270844 | None:intergenic | 55.0% |
| ! | CGTGTTGCTAAGGTCACTGG+TGG | - | chr1.1:81270354-81270373 | MS.gene75171:intron | 55.0% |
| ! | CTCCGTGTTGCTAAGGTCAC+TGG | - | chr1.1:81270351-81270370 | MS.gene75171:intron | 55.0% |
| ! | GGTGAGGTTGTCGATTGCTC+AGG | - | chr1.1:81270716-81270735 | MS.gene75171:intron | 55.0% |
| AGACCAGGGCCATTCGCAGA+AGG | - | chr1.1:81270829-81270848 | MS.gene75171:CDS | 60.0% | |
| CAGAAGGCTCACCAAGCACC+AGG | - | chr1.1:81270845-81270864 | MS.gene75171:CDS | 60.0% | |
| ! | TGGCCCTGGTCTTCTTTGGG+CGG | + | chr1.1:81270821-81270840 | None:intergenic | 60.0% |
| GAGCCTTCTGCGAATGGCCC+TGG | + | chr1.1:81270835-81270854 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 81269932 | 81271724 | 81269932 | ID=MS.gene75171 |
| chr1.1 | mRNA | 81269932 | 81271724 | 81269932 | ID=MS.gene75171.t1;Parent=MS.gene75171 |
| chr1.1 | exon | 81271660 | 81271724 | 81271660 | ID=MS.gene75171.t1.exon1;Parent=MS.gene75171.t1 |
| chr1.1 | CDS | 81271660 | 81271724 | 81271660 | ID=cds.MS.gene75171.t1;Parent=MS.gene75171.t1 |
| chr1.1 | exon | 81271485 | 81271564 | 81271485 | ID=MS.gene75171.t1.exon2;Parent=MS.gene75171.t1 |
| chr1.1 | CDS | 81271485 | 81271564 | 81271485 | ID=cds.MS.gene75171.t1;Parent=MS.gene75171.t1 |
| chr1.1 | exon | 81271256 | 81271385 | 81271256 | ID=MS.gene75171.t1.exon3;Parent=MS.gene75171.t1 |
| chr1.1 | CDS | 81271256 | 81271385 | 81271256 | ID=cds.MS.gene75171.t1;Parent=MS.gene75171.t1 |
| chr1.1 | exon | 81270790 | 81270946 | 81270790 | ID=MS.gene75171.t1.exon4;Parent=MS.gene75171.t1 |
| chr1.1 | CDS | 81270790 | 81270946 | 81270790 | ID=cds.MS.gene75171.t1;Parent=MS.gene75171.t1 |
| chr1.1 | exon | 81269932 | 81270006 | 81269932 | ID=MS.gene75171.t1.exon5;Parent=MS.gene75171.t1 |
| chr1.1 | CDS | 81269932 | 81270006 | 81269932 | ID=cds.MS.gene75171.t1;Parent=MS.gene75171.t1 |
| Gene Sequence |
| Protein sequence |
