Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90833.t1 | XP_013470470.1 | 98.3 | 121 | 2 | 0 | 1 | 121 | 1 | 121 | 1.20E-52 | 215.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90833.t1 | Q9M5L0 | 92.4 | 119 | 9 | 0 | 2 | 120 | 4 | 122 | 2.1e-50 | 199.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90833.t1 | I3T2Q3 | 98.3 | 121 | 2 | 0 | 1 | 121 | 1 | 121 | 8.5e-53 | 215.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene90833 | 0.814438 | 1.54E-51 | -1.69E-46 |
| MS.gene050290 | MS.gene90833 | 0.817427 | 3.32E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene90833 | 0.822089 | 2.85E-53 | -1.69E-46 |
| MS.gene050916 | MS.gene90833 | 0.810196 | 1.30E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene90833 | 0.813853 | 2.07E-51 | -1.69E-46 |
| MS.gene051330 | MS.gene90833 | 0.812093 | 5.04E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene90833 | 0.863441 | 2.48E-64 | -1.69E-46 |
| MS.gene051748 | MS.gene90833 | 0.846483 | 2.11E-59 | -1.69E-46 |
| MS.gene051756 | MS.gene90833 | 0.836351 | 9.85E-57 | -1.69E-46 |
| MS.gene051850 | MS.gene90833 | 0.850018 | 2.23E-60 | -1.69E-46 |
| MS.gene051903 | MS.gene90833 | 0.893179 | 8.00E-75 | -1.69E-46 |
| MS.gene052947 | MS.gene90833 | 0.82886 | 7.11E-55 | -1.69E-46 |
| MS.gene053952 | MS.gene90833 | 0.862744 | 4.08E-64 | -1.69E-46 |
| MS.gene054937 | MS.gene90833 | 0.820943 | 5.25E-53 | -1.69E-46 |
| MS.gene056075 | MS.gene90833 | 0.878927 | 1.89E-69 | -1.69E-46 |
| MS.gene056631 | MS.gene90833 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene056917 | MS.gene90833 | 0.802085 | 6.63E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene90833 | 0.883736 | 3.49E-71 | -1.69E-46 |
| MS.gene058906 | MS.gene90833 | 0.806722 | 7.17E-50 | -1.69E-46 |
| MS.gene059726 | MS.gene90833 | 0.812649 | 3.81E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene90833 | 0.889183 | 3.04E-73 | -1.69E-46 |
| MS.gene06011 | MS.gene90833 | 0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene061145 | MS.gene90833 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene06118 | MS.gene90833 | 0.813245 | 2.82E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90833 | MS.gene066455 | PPI |
| MS.gene90833 | MS.gene036455 | PPI |
| MS.gene90833 | MS.gene074269 | PPI |
| MS.gene90833 | MS.gene029109 | PPI |
| MS.gene90833 | MS.gene67378 | PPI |
| MS.gene90833 | MS.gene021047 | PPI |
| MS.gene90833 | MS.gene75171 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90833.t1 | MTR_1g115545 | 98.347 | 121 | 2 | 0 | 1 | 121 | 1 | 121 | 8.33e-81 | 233 |
| MS.gene90833.t1 | MTR_1g067490 | 92.500 | 120 | 9 | 0 | 2 | 121 | 3 | 122 | 1.59e-74 | 217 |
| MS.gene90833.t1 | MTR_4g062410 | 91.667 | 120 | 10 | 0 | 2 | 121 | 4 | 123 | 2.08e-72 | 211 |
| MS.gene90833.t1 | MTR_7g080090 | 90.000 | 120 | 12 | 0 | 2 | 121 | 4 | 123 | 4.69e-71 | 208 |
| MS.gene90833.t1 | MTR_4g072410 | 85.124 | 121 | 18 | 0 | 1 | 121 | 1 | 121 | 2.70e-67 | 199 |
| MS.gene90833.t1 | MTR_1g105880 | 72.222 | 90 | 14 | 1 | 9 | 98 | 2 | 80 | 1.31e-35 | 117 |
| MS.gene90833.t1 | MTR_5g045540 | 88.571 | 35 | 4 | 0 | 65 | 99 | 2 | 36 | 5.06e-14 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90833.t1 | AT2G39390 | 88.235 | 119 | 14 | 0 | 2 | 120 | 4 | 122 | 4.36e-70 | 206 |
| MS.gene90833.t1 | AT3G09500 | 87.395 | 119 | 15 | 0 | 2 | 120 | 4 | 122 | 1.19e-68 | 202 |
| MS.gene90833.t1 | AT5G02610 | 87.395 | 119 | 15 | 0 | 2 | 120 | 4 | 122 | 1.82e-68 | 202 |
| MS.gene90833.t1 | AT3G55170 | 85.714 | 119 | 17 | 0 | 2 | 120 | 4 | 122 | 4.19e-67 | 198 |
| MS.gene90833.t1 | AT3G55170 | 85.714 | 119 | 17 | 0 | 2 | 120 | 4 | 122 | 4.19e-67 | 198 |
| MS.gene90833.t1 | AT3G55170 | 85.714 | 119 | 17 | 0 | 2 | 120 | 4 | 122 | 4.19e-67 | 198 |
| MS.gene90833.t1 | AT5G02610 | 73.239 | 142 | 15 | 1 | 2 | 120 | 4 | 145 | 9.02e-63 | 188 |
| MS.gene90833.t1 | AT3G55170 | 86.458 | 96 | 13 | 0 | 2 | 97 | 4 | 99 | 4.75e-52 | 159 |
| MS.gene90833.t1 | AT3G55170 | 86.458 | 96 | 13 | 0 | 2 | 97 | 4 | 99 | 4.75e-52 | 159 |
Find 32 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATGGCCCTGGTCTTCTT+TGG | 0.171363 | 1.4:-87759782 | None:intergenic |
| TCAAAGCAGCCTTCTGCTTC+TGG | 0.210134 | 1.4:-87759715 | None:intergenic |
| TTGATAGCATATTTCCTCAT+TGG | 0.349490 | 1.4:-87760652 | None:intergenic |
| GAATGGCCCTGGTCTTCTTT+GGG | 0.358511 | 1.4:-87759781 | None:intergenic |
| GACCGAGAGGGAGAAGAAAA+AGG | 0.368054 | 1.4:+87760618 | MS.gene90833:CDS |
| TGATAGCATATTTCCTCATT+GGG | 0.379576 | 1.4:-87760651 | None:intergenic |
| GAAGCAGAAGGCTGCTTTGA+GGG | 0.418273 | 1.4:+87759718 | MS.gene90833:CDS |
| CAAAGCAGCCTTCTGCTTCT+GGG | 0.419055 | 1.4:-87759714 | None:intergenic |
| GAGCCTTCTGCGAATGGCCC+TGG | 0.419374 | 1.4:-87759792 | None:intergenic |
| CTCCGTGTTGCTAAGGTCAC+TGG | 0.447113 | 1.4:+87759340 | MS.gene90833:CDS |
| GTAAAGCAAGTTCAGCTTTG+AGG | 0.452854 | 1.4:-87759318 | None:intergenic |
| CTTGGTGAGCCTTCTGCGAA+TGG | 0.472202 | 1.4:-87759798 | None:intergenic |
| AATGAGGAAATATGCTATCA+AGG | 0.472756 | 1.4:+87760654 | MS.gene90833:CDS |
| TGCTTTACTCCGTGTTGCTA+AGG | 0.473685 | 1.4:+87759333 | MS.gene90833:CDS |
| GAAATATGCTATCAAGGCAT+AGG | 0.504384 | 1.4:+87760660 | MS.gene90833:CDS |
| AGGGTTTAATACCTGGTGCT+TGG | 0.515451 | 1.4:-87759816 | None:intergenic |
| CAGTGAAGGTTCACGAGTTG+AGG | 0.518240 | 1.4:+87759257 | MS.gene90833:intron |
| ATCTCCGCCCAAAGAAGACC+AGG | 0.531518 | 1.4:+87759774 | MS.gene90833:CDS |
| CAGAAGGCTCACCAAGCACC+AGG | 0.535404 | 1.4:+87759805 | MS.gene90833:CDS |
| TTCTTTGGGCGGAGATCAAG+TGG | 0.553377 | 1.4:-87759767 | None:intergenic |
| GGTGAGGTTGTCGATTGCTC+AGG | 0.570678 | 1.4:+87759676 | MS.gene90833:CDS |
| TGGCCCTGGTCTTCTTTGGG+CGG | 0.571866 | 1.4:-87759778 | None:intergenic |
| AAATATGCTATCAAGGCATA+GGG | 0.572355 | 1.4:+87760661 | MS.gene90833:CDS |
| AGAAGCAGAAGGCTGCTTTG+AGG | 0.576045 | 1.4:+87759717 | MS.gene90833:CDS |
| AGACCAGGGCCATTCGCAGA+AGG | 0.591558 | 1.4:+87759789 | MS.gene90833:CDS |
| AGGAGACATATTTCCCAATG+AGG | 0.613250 | 1.4:+87760638 | MS.gene90833:CDS |
| AGTGATTTCCCAGAAGCAGA+AGG | 0.617415 | 1.4:+87759706 | MS.gene90833:CDS |
| CACCAGTGACCTTAGCAACA+CGG | 0.624056 | 1.4:-87759342 | None:intergenic |
| GTCTTCGCTGAAGACCGAGA+GGG | 0.684722 | 1.4:+87760606 | MS.gene90833:intron |
| CGTGTTGCTAAGGTCACTGG+TGG | 0.692805 | 1.4:+87759343 | MS.gene90833:CDS |
| TCTCCGCCCAAAGAAGACCA+GGG | 0.718890 | 1.4:+87759775 | MS.gene90833:CDS |
| AGTCTTCGCTGAAGACCGAG+AGG | 0.727322 | 1.4:+87760605 | MS.gene90833:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTGATTATTTTATTT+GGG | + | chr1.4:87759639-87759658 | MS.gene90833:intron | 10.0% |
| !!! | TTGAATTTTTATTTACATTT+TGG | - | chr1.4:87759386-87759405 | None:intergenic | 10.0% |
| !!! | TTGTTTTTGATTATTTTATT+TGG | + | chr1.4:87759638-87759657 | MS.gene90833:intron | 10.0% |
| !! | AAATTTCAGTTTGTATATAT+AGG | - | chr1.4:87760508-87760527 | None:intergenic | 15.0% |
| !! | AACATGAATTATACATTAAA+AGG | - | chr1.4:87759839-87759858 | None:intergenic | 15.0% |
| !! | ACATGAATTATACATTAAAA+GGG | - | chr1.4:87759838-87759857 | None:intergenic | 15.0% |
| !! | GAATGAAATCTTAAATAATG+AGG | + | chr1.4:87760080-87760099 | MS.gene90833:intron | 20.0% |
| !! | TAGTGAATTTCATGTAAAAA+TGG | - | chr1.4:87760295-87760314 | None:intergenic | 20.0% |
| !! | TTAGAAGATAATAACTAGAT+TGG | + | chr1.4:87760348-87760367 | MS.gene90833:intron | 20.0% |
| !!! | ACATTCAATTTTATGTGTTA+AGG | - | chr1.4:87760266-87760285 | None:intergenic | 20.0% |
| !!! | CTTTATTCTTTTATGTCAAT+TGG | + | chr1.4:87759407-87759426 | MS.gene90833:intron | 20.0% |
| !!! | TTGTTTGATTTCAGAAATTA+GGG | - | chr1.4:87759182-87759201 | None:intergenic | 20.0% |
| !!! | TTTGTTTGATTTCAGAAATT+AGG | - | chr1.4:87759183-87759202 | None:intergenic | 20.0% |
| ! | AACAATTTATCCTTCAGAAT+TGG | - | chr1.4:87759520-87759539 | None:intergenic | 25.0% |
| ! | CTTTCAAGGATAACATTTAA+TGG | - | chr1.4:87760223-87760242 | None:intergenic | 25.0% |
| ! | GATTGTGTGATGATTATAAT+GGG | + | chr1.4:87759560-87759579 | MS.gene90833:intron | 25.0% |
| ! | TGATTATTACTGTTCTTTCA+AGG | - | chr1.4:87760237-87760256 | None:intergenic | 25.0% |
| ! | TGATTGTGTGATGATTATAA+TGG | + | chr1.4:87759559-87759578 | MS.gene90833:intron | 25.0% |
| !! | TTTTGTCTCAAGTACTATTT+AGG | + | chr1.4:87760048-87760067 | MS.gene90833:intron | 25.0% |
| !!! | AGTTTTCTTTCTAAAATCGA+AGG | + | chr1.4:87760179-87760198 | MS.gene90833:intron | 25.0% |
| !!! | TAACTAGATTGGTTTATTGT+TGG | + | chr1.4:87760359-87760378 | MS.gene90833:intron | 25.0% |
| !!! | TTTATTTGGGTTTTTCAGTA+AGG | + | chr1.4:87759652-87759671 | MS.gene90833:intron | 25.0% |
| AAAACAACCAATGGTGTAAA+AGG | - | chr1.4:87760397-87760416 | None:intergenic | 30.0% | |
| AATGAGGAAATATGCTATCA+AGG | + | chr1.4:87760654-87760673 | MS.gene90833:CDS | 30.0% | |
| ACATACAAGCAAAGAGAAAA+AGG | - | chr1.4:87760476-87760495 | None:intergenic | 30.0% | |
| AGGATAACATTTAATGGTGT+AGG | - | chr1.4:87760217-87760236 | None:intergenic | 30.0% | |
| CATTAAAAGGGTTTAATACC+TGG | - | chr1.4:87759826-87759845 | None:intergenic | 30.0% | |
| GAAGGATAAATTGTTCCTTT+CGG | + | chr1.4:87759525-87759544 | MS.gene90833:intron | 30.0% | |
| TATCCTTCAGAATTGGTAAA+TGG | - | chr1.4:87759513-87759532 | None:intergenic | 30.0% | |
| TGATAGCATATTTCCTCATT+GGG | - | chr1.4:87760654-87760673 | None:intergenic | 30.0% | |
| ! | ATTATAGCCTTTTACACCAT+TGG | + | chr1.4:87760387-87760406 | MS.gene90833:intron | 30.0% |
| ! | GATCTGTATCATTTGGAATA+AGG | - | chr1.4:87760117-87760136 | None:intergenic | 30.0% |
| ! | TTGATAGCATATTTCCTCAT+TGG | - | chr1.4:87760655-87760674 | None:intergenic | 30.0% |
| ! | TTTGATTTCAGAAATTAGGG+TGG | - | chr1.4:87759179-87759198 | None:intergenic | 30.0% |
| !! | TTTTCAACCTGATTTGTCTT+GGG | + | chr1.4:87760413-87760432 | MS.gene90833:intron | 30.0% |
| !!! | GTTTTTGTTTTGTGTCTGTA+AGG | + | chr1.4:87759585-87759604 | MS.gene90833:intron | 30.0% |
| AGCAAAAACCACAGATACAT+TGG | - | chr1.4:87759892-87759911 | None:intergenic | 35.0% | |
| ATACACCAATCACCAATTGA+TGG | - | chr1.4:87759981-87760000 | None:intergenic | 35.0% | |
| GAAAAACAAAGCTGATCTGT+TGG | + | chr1.4:87759282-87759301 | MS.gene90833:CDS | 35.0% | |
| GCAAAAACCACAGATACATT+GGG | - | chr1.4:87759891-87759910 | None:intergenic | 35.0% | |
| GCAAAGAGAAAAAGGTTACA+AGG | - | chr1.4:87760468-87760487 | None:intergenic | 35.0% | |
| TATTGTGACCATCCATCAAT+TGG | + | chr1.4:87759966-87759985 | MS.gene90833:intron | 35.0% | |
| TCAGAAATTAGGGTGGTTTA+GGG | - | chr1.4:87759172-87759191 | None:intergenic | 35.0% | |
| TGAATATCCCAAGACAAATC+AGG | - | chr1.4:87760423-87760442 | None:intergenic | 35.0% | |
| TTCAAGCAGAACAGTATGTT+TGG | + | chr1.4:87760548-87760567 | MS.gene90833:intron | 35.0% | |
| TTCAGAAATTAGGGTGGTTT+AGG | - | chr1.4:87759173-87759192 | None:intergenic | 35.0% | |
| ! | AATTGTTCCTTTCGGTGTAA+TGG | + | chr1.4:87759533-87759552 | MS.gene90833:intron | 35.0% |
| ! | ACTGCATTGATGCATTTCAT+TGG | + | chr1.4:87759916-87759935 | MS.gene90833:intron | 35.0% |
| !! | AATTGGTGCTATGATCGTAA+AGG | + | chr1.4:87759424-87759443 | MS.gene90833:intron | 35.0% |
| !! | ATCAGGTTGAAAACAACCAA+TGG | - | chr1.4:87760406-87760425 | None:intergenic | 35.0% |
| !! | ATTTGGGTTTTTCAGTAAGG+TGG | + | chr1.4:87759655-87759674 | MS.gene90833:intron | 35.0% |
| !! | GTTTTCAACCTGATTTGTCT+TGG | + | chr1.4:87760412-87760431 | MS.gene90833:intron | 35.0% |
| !! | TACATTTTGGAGAGCTTGTT+GGG | - | chr1.4:87759373-87759392 | None:intergenic | 35.0% |
| !! | TTACATTTTGGAGAGCTTGT+TGG | - | chr1.4:87759374-87759393 | None:intergenic | 35.0% |
| !!! | TGTGTTTTGATTTGCAGTGA+AGG | + | chr1.4:87759243-87759262 | MS.gene90833:intron | 35.0% |
| !!! | TTTGTTTTGTGTCTGTAAGG+TGG | + | chr1.4:87759588-87759607 | MS.gene90833:intron | 35.0% |
| AAAACCACAGATACATTGGG+AGG | - | chr1.4:87759888-87759907 | None:intergenic | 40.0% | |
| ACCAATCACCAATTGATGGA+TGG | - | chr1.4:87759977-87759996 | None:intergenic | 40.0% | |
| AGGAGACATATTTCCCAATG+AGG | + | chr1.4:87760638-87760657 | MS.gene90833:CDS | 40.0% | |
| ATCAAAGCCATTACACCGAA+AGG | - | chr1.4:87759543-87759562 | None:intergenic | 40.0% | |
| ATGAAATTCACTACACGACC+AGG | + | chr1.4:87760302-87760321 | MS.gene90833:intron | 40.0% | |
| CAGAAAATTGTACAGCAACC+TGG | - | chr1.4:87760323-87760342 | None:intergenic | 40.0% | |
| CGTCCATTTACCAATTCTGA+AGG | + | chr1.4:87759507-87759526 | MS.gene90833:intron | 40.0% | |
| GTAAAGCAAGTTCAGCTTTG+AGG | - | chr1.4:87759321-87759340 | None:intergenic | 40.0% | |
| ! | ACCATCCATCAATTGGTGAT+TGG | + | chr1.4:87759973-87759992 | MS.gene90833:intron | 40.0% |
| AGGGTTTAATACCTGGTGCT+TGG | - | chr1.4:87759819-87759838 | None:intergenic | 45.0% | |
| AGTGATTTCCCAGAAGCAGA+AGG | + | chr1.4:87759706-87759725 | MS.gene90833:CDS | 45.0% | |
| ATACAGATCCTGCAGGTGTA+GGG | + | chr1.4:87760128-87760147 | MS.gene90833:intron | 45.0% | |
| CCAAATGATACAGATCCTGC+AGG | + | chr1.4:87760121-87760140 | MS.gene90833:intron | 45.0% | |
| CCTGCAGGATCTGTATCATT+TGG | - | chr1.4:87760124-87760143 | None:intergenic | 45.0% | |
| TACACCTCCCAATGTATCTG+TGG | + | chr1.4:87759881-87759900 | MS.gene90833:intron | 45.0% | |
| ! | CTCCTTTTTCTTCTCCCTCT+CGG | - | chr1.4:87760623-87760642 | None:intergenic | 45.0% |
| ! | TGCTTTACTCCGTGTTGCTA+AGG | + | chr1.4:87759333-87759352 | MS.gene90833:CDS | 45.0% |
| !! | GGTTTTTCAGTAAGGTGGTG+AGG | + | chr1.4:87759660-87759679 | MS.gene90833:intron | 45.0% |
| CAAAGCAGCCTTCTGCTTCT+GGG | - | chr1.4:87759717-87759736 | None:intergenic | 50.0% | |
| CACCAGTGACCTTAGCAACA+CGG | - | chr1.4:87759345-87759364 | None:intergenic | 50.0% | |
| CAGTGAAGGTTCACGAGTTG+AGG | + | chr1.4:87759257-87759276 | MS.gene90833:intron | 50.0% | |
| GACCGAGAGGGAGAAGAAAA+AGG | + | chr1.4:87760618-87760637 | MS.gene90833:CDS | 50.0% | |
| GATACAGATCCTGCAGGTGT+AGG | + | chr1.4:87760127-87760146 | MS.gene90833:intron | 50.0% | |
| TCAAAGCAGCCTTCTGCTTC+TGG | - | chr1.4:87759718-87759737 | None:intergenic | 50.0% | |
| TTCTTTGGGCGGAGATCAAG+TGG | - | chr1.4:87759770-87759789 | None:intergenic | 50.0% | |
| ! | AGAAGCAGAAGGCTGCTTTG+AGG | + | chr1.4:87759717-87759736 | MS.gene90833:CDS | 50.0% |
| ! | GAAGCAGAAGGCTGCTTTGA+GGG | + | chr1.4:87759718-87759737 | MS.gene90833:CDS | 50.0% |
| ! | GAATGGCCCTGGTCTTCTTT+GGG | - | chr1.4:87759784-87759803 | None:intergenic | 50.0% |
| AGTCTTCGCTGAAGACCGAG+AGG | + | chr1.4:87760605-87760624 | MS.gene90833:intron | 55.0% | |
| ATCCTGCAGGTGTAGGGAGA+AGG | + | chr1.4:87760134-87760153 | MS.gene90833:intron | 55.0% | |
| ATCCTTCTCCCTACACCTGC+AGG | - | chr1.4:87760139-87760158 | None:intergenic | 55.0% | |
| ATCTCCGCCCAAAGAAGACC+AGG | + | chr1.4:87759774-87759793 | MS.gene90833:CDS | 55.0% | |
| CTTGGTGAGCCTTCTGCGAA+TGG | - | chr1.4:87759801-87759820 | None:intergenic | 55.0% | |
| GTCTTCGCTGAAGACCGAGA+GGG | + | chr1.4:87760606-87760625 | MS.gene90833:intron | 55.0% | |
| TCTCCGCCCAAAGAAGACCA+GGG | + | chr1.4:87759775-87759794 | MS.gene90833:CDS | 55.0% | |
| ! | CGAATGGCCCTGGTCTTCTT+TGG | - | chr1.4:87759785-87759804 | None:intergenic | 55.0% |
| ! | CGTGTTGCTAAGGTCACTGG+TGG | + | chr1.4:87759343-87759362 | MS.gene90833:CDS | 55.0% |
| ! | CTCCGTGTTGCTAAGGTCAC+TGG | + | chr1.4:87759340-87759359 | MS.gene90833:CDS | 55.0% |
| ! | GGTGAGGTTGTCGATTGCTC+AGG | + | chr1.4:87759676-87759695 | MS.gene90833:CDS | 55.0% |
| AGACCAGGGCCATTCGCAGA+AGG | + | chr1.4:87759789-87759808 | MS.gene90833:CDS | 60.0% | |
| CAGAAGGCTCACCAAGCACC+AGG | + | chr1.4:87759805-87759824 | MS.gene90833:CDS | 60.0% | |
| ! | TGGCCCTGGTCTTCTTTGGG+CGG | - | chr1.4:87759781-87759800 | None:intergenic | 60.0% |
| GAGCCTTCTGCGAATGGCCC+TGG | - | chr1.4:87759795-87759814 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87759157 | 87760681 | 87759157 | ID=MS.gene90833 |
| chr1.4 | mRNA | 87759157 | 87760681 | 87759157 | ID=MS.gene90833.t1;Parent=MS.gene90833 |
| chr1.4 | exon | 87759157 | 87759160 | 87759157 | ID=MS.gene90833.t1.exon1;Parent=MS.gene90833.t1 |
| chr1.4 | CDS | 87759157 | 87759160 | 87759157 | ID=cds.MS.gene90833.t1;Parent=MS.gene90833.t1 |
| chr1.4 | exon | 87759260 | 87759389 | 87759260 | ID=MS.gene90833.t1.exon2;Parent=MS.gene90833.t1 |
| chr1.4 | CDS | 87759260 | 87759389 | 87759260 | ID=cds.MS.gene90833.t1;Parent=MS.gene90833.t1 |
| chr1.4 | exon | 87759670 | 87759826 | 87759670 | ID=MS.gene90833.t1.exon3;Parent=MS.gene90833.t1 |
| chr1.4 | CDS | 87759670 | 87759826 | 87759670 | ID=cds.MS.gene90833.t1;Parent=MS.gene90833.t1 |
| chr1.4 | exon | 87760607 | 87760681 | 87760607 | ID=MS.gene90833.t1.exon4;Parent=MS.gene90833.t1 |
| chr1.4 | CDS | 87760607 | 87760681 | 87760607 | ID=cds.MS.gene90833.t1;Parent=MS.gene90833.t1 |
| Gene Sequence |
| Protein sequence |
