Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036455.t1 | PNX93169.1 | 95.8 | 120 | 5 | 0 | 3 | 122 | 4 | 123 | 1.10E-50 | 209.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036455.t1 | Q9M5L0 | 90.8 | 119 | 11 | 0 | 3 | 121 | 4 | 122 | 8.1e-50 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036455.t1 | A0A2K3MR28 | 95.8 | 120 | 5 | 0 | 3 | 122 | 4 | 123 | 8.1e-51 | 209.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074269 | MS.gene036455 | PPI |
| MS.gene066455 | MS.gene036455 | PPI |
| MS.gene029109 | MS.gene036455 | PPI |
| MS.gene036455 | MS.gene066455 | PPI |
| MS.gene67378 | MS.gene036455 | PPI |
| MS.gene021047 | MS.gene036455 | PPI |
| MS.gene75171 | MS.gene036455 | PPI |
| MS.gene90833 | MS.gene036455 | PPI |
| MS.gene036455 | MS.gene074269 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036455.t1 | MTR_1g067490 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 6.11e-76 | 221 |
| MS.gene036455.t1 | MTR_4g062410 | 94.215 | 121 | 7 | 0 | 2 | 122 | 3 | 123 | 1.10e-75 | 220 |
| MS.gene036455.t1 | MTR_1g115545 | 90.000 | 120 | 12 | 0 | 3 | 122 | 2 | 121 | 6.64e-72 | 210 |
| MS.gene036455.t1 | MTR_4g072410 | 90.756 | 119 | 11 | 0 | 4 | 122 | 3 | 121 | 4.79e-71 | 208 |
| MS.gene036455.t1 | MTR_7g080090 | 85.000 | 120 | 18 | 0 | 3 | 122 | 4 | 123 | 8.80e-66 | 195 |
| MS.gene036455.t1 | MTR_1g105880 | 70.787 | 89 | 15 | 1 | 10 | 98 | 2 | 79 | 4.73e-34 | 113 |
| MS.gene036455.t1 | MTR_5g045540 | 85.294 | 34 | 5 | 0 | 67 | 100 | 3 | 36 | 3.08e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036455.t1 | AT2G39390 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 5.43e-68 | 201 |
| MS.gene036455.t1 | AT3G09500 | 85.714 | 119 | 17 | 0 | 3 | 121 | 4 | 122 | 3.36e-67 | 199 |
| MS.gene036455.t1 | AT5G02610 | 86.555 | 119 | 16 | 0 | 3 | 121 | 4 | 122 | 3.43e-67 | 198 |
| MS.gene036455.t1 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.13e-65 | 195 |
| MS.gene036455.t1 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.13e-65 | 195 |
| MS.gene036455.t1 | AT3G55170 | 84.034 | 119 | 19 | 0 | 3 | 121 | 4 | 122 | 1.13e-65 | 195 |
| MS.gene036455.t1 | AT5G02610 | 72.535 | 142 | 16 | 1 | 3 | 121 | 4 | 145 | 1.93e-61 | 185 |
| MS.gene036455.t1 | AT3G55170 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.27e-50 | 156 |
| MS.gene036455.t1 | AT3G55170 | 83.505 | 97 | 16 | 0 | 3 | 99 | 4 | 100 | 1.27e-50 | 156 |
Find 25 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATAGCTCTTGTCTTCT+TGG | 0.184523 | 4.4:-42951634 | None:intergenic |
| AGCATTGAGGGAAGTTTATA+AGG | 0.261646 | 4.4:+42951581 | MS.gene036455:CDS |
| GGTCCAACATTACGCCTTAA+TGG | 0.287059 | 4.4:-42952913 | None:intergenic |
| TACATCTTGGAAAGCTTGTT+TGG | 0.300449 | 4.4:-42951095 | None:intergenic |
| CTAATAGCTCTTGTCTTCTT+GGG | 0.344589 | 4.4:-42951633 | None:intergenic |
| ACATCTTGGAAAGCTTGTTT+GGG | 0.366421 | 4.4:-42951094 | None:intergenic |
| AGTGAGAAAGTATGCCATTA+AGG | 0.406198 | 4.4:+42952899 | MS.gene036455:CDS |
| GGGCAAGAAGTACTTGCCTT+TGG | 0.416589 | 4.4:+42951602 | MS.gene036455:CDS |
| TTTGAACGCAATAGCTATCA+AGG | 0.421455 | 4.4:+42950968 | MS.gene036455:intron |
| TTGGATGCAGCAAGGTTGTT+CGG | 0.445039 | 4.4:+42951511 | MS.gene036455:intron |
| GCATTGAGGGAAGTTTATAA+GGG | 0.470641 | 4.4:+42951582 | MS.gene036455:CDS |
| CTTCGCGTTGCGAAAGTCAC+CGG | 0.488670 | 4.4:+42951065 | MS.gene036455:CDS |
| AAGCTTGTTTGGGGCACCGC+CGG | 0.495153 | 4.4:-42951084 | None:intergenic |
| GAAACAAAAGACAGCATTGA+GGG | 0.506620 | 4.4:+42951569 | MS.gene036455:CDS |
| AAGACGCCTCACTAAGCATC+AGG | 0.512300 | 4.4:+42951656 | MS.gene036455:CDS |
| TTAATGGCATACTTTCTCAC+TGG | 0.517469 | 4.4:-42952897 | None:intergenic |
| TTCTTGGGACGGAGATCCAA+AGG | 0.574336 | 4.4:-42951618 | None:intergenic |
| TAGCTCTTGTCTTCTTGGGA+CGG | 0.580244 | 4.4:-42951629 | None:intergenic |
| TAATGGCATACTTTCTCACT+GGG | 0.582481 | 4.4:-42952896 | None:intergenic |
| GACAGAGCGTGAGAAGAAGA+AGG | 0.584517 | 4.4:+42952863 | MS.gene036455:CDS |
| CATCTTGGAAAGCTTGTTTG+GGG | 0.612959 | 4.4:-42951093 | None:intergenic |
| CTATCAAGGTTTATGAGCTG+AGG | 0.615557 | 4.4:+42950982 | MS.gene036455:CDS |
| CGCGTTGCGAAAGTCACCGG+CGG | 0.627530 | 4.4:+42951068 | MS.gene036455:CDS |
| AGAAACAAAAGACAGCATTG+AGG | 0.664403 | 4.4:+42951568 | MS.gene036455:CDS |
| CATGTACCTGATGCTTAGTG+AGG | 0.666111 | 4.4:-42951662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTATTTTGTAGATTTTT+GGG | + | chr4.4:42951940-42951959 | MS.gene036455:intron | 15.0% |
| !!! | TGAATTAATTTGATGAAATT+CGG | + | chr4.4:42951739-42951758 | MS.gene036455:intron | 15.0% |
| !!! | TTGGTTACAATTATAATTTT+GGG | + | chr4.4:42952452-42952471 | MS.gene036455:intron | 15.0% |
| !!! | TTTTTTCATAATTGTTTATG+TGG | + | chr4.4:42952399-42952418 | MS.gene036455:intron | 15.0% |
| !! | TAATATGTGGTCTATATTAA+TGG | + | chr4.4:42951371-42951390 | MS.gene036455:intron | 20.0% |
| !! | TAGAGAATAGAATAAATGAT+TGG | - | chr4.4:42950887-42950906 | None:intergenic | 20.0% |
| !! | TATAAGCTTTCTTCATAAAA+TGG | + | chr4.4:42952799-42952818 | MS.gene036455:intron | 20.0% |
| !! | TTATGAAAAAATGAGTAAGT+TGG | - | chr4.4:42952390-42952409 | None:intergenic | 20.0% |
| !! | TTTGTGTTAATTTAAATACG+CGG | + | chr4.4:42951186-42951205 | MS.gene036455:intron | 20.0% |
| !!! | AAGCAAAAAAACTACTTTTT+AGG | - | chr4.4:42951422-42951441 | None:intergenic | 20.0% |
| !!! | ATAATGATTTTCATGATGTA+TGG | + | chr4.4:42951868-42951887 | MS.gene036455:intron | 20.0% |
| !!! | CAAGTTATTTTGTAGATTTT+TGG | + | chr4.4:42951939-42951958 | MS.gene036455:intron | 20.0% |
| !!! | CTTGGTTACAATTATAATTT+TGG | + | chr4.4:42952451-42952470 | MS.gene036455:intron | 20.0% |
| !!! | TCATCTATAGTAATTTTGAT+TGG | - | chr4.4:42951272-42951291 | None:intergenic | 20.0% |
| !!! | TGATTGTTTTTGTTATTGTT+TGG | + | chr4.4:42951492-42951511 | MS.gene036455:intron | 20.0% |
| !!! | TGGTTACAATTATAATTTTG+GGG | + | chr4.4:42952453-42952472 | MS.gene036455:intron | 20.0% |
| !!! | TTAATAGTTTGTAAAGTTTG+TGG | + | chr4.4:42951813-42951832 | MS.gene036455:intron | 20.0% |
| ! | AAGCAAGAAAACTACTTTAT+AGG | + | chr4.4:42951316-42951335 | MS.gene036455:intron | 25.0% |
| ! | AATTAAGTGCAATAGAATAG+CGG | - | chr4.4:42951129-42951148 | None:intergenic | 25.0% |
| ! | ATGAGTACAAAAAATGATGT+TGG | - | chr4.4:42950919-42950938 | None:intergenic | 25.0% |
| ! | ATTGTGGAATATAACAATAG+TGG | + | chr4.4:42952138-42952157 | MS.gene036455:intron | 25.0% |
| ! | CATTGAATAAATGATGTATG+AGG | + | chr4.4:42951341-42951360 | MS.gene036455:intron | 25.0% |
| !! | ATTTTATCAATGTGCCTTAT+TGG | + | chr4.4:42952521-42952540 | MS.gene036455:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr4.4:42951433-42951452 | MS.gene036455:intron | 25.0% |
| !!! | CATACATGTTTTGACTTTTA+AGG | + | chr4.4:42952658-42952677 | MS.gene036455:intron | 25.0% |
| AAATGTGGTACCATTAAATG+AGG | + | chr4.4:42952363-42952382 | MS.gene036455:intron | 30.0% | |
| AATGGCTGAATGAATTTACT+TGG | + | chr4.4:42952817-42952836 | MS.gene036455:intron | 30.0% | |
| ATGAAATTCGGACTTATTCT+TGG | + | chr4.4:42951751-42951770 | MS.gene036455:intron | 30.0% | |
| ATGAGGTCTATGTTAATATG+TGG | + | chr4.4:42951358-42951377 | MS.gene036455:intron | 30.0% | |
| CATTGAATGAATGATGTATG+TGG | - | chr4.4:42951397-42951416 | None:intergenic | 30.0% | |
| GTGATATATTTGCCTCTTAT+CGG | + | chr4.4:42952551-42952570 | MS.gene036455:intron | 30.0% | |
| GTTTATGTGGACAATACTTA+TGG | + | chr4.4:42952412-42952431 | MS.gene036455:intron | 30.0% | |
| TGATATATTTGCCTCTTATC+GGG | + | chr4.4:42952552-42952571 | MS.gene036455:intron | 30.0% | |
| TTCTTGCTTATAATAGTGAC+CGG | - | chr4.4:42951305-42951324 | None:intergenic | 30.0% | |
| TTGCGTTCAAAAAAGAAGAA+AGG | - | chr4.4:42950959-42950978 | None:intergenic | 30.0% | |
| ! | TTTAATGGTACCACATTTTG+TGG | - | chr4.4:42952361-42952380 | None:intergenic | 30.0% |
| !! | AATTATAATTTTGGGGACTG+GGG | + | chr4.4:42952460-42952479 | MS.gene036455:intron | 30.0% |
| !! | ACAATTATAATTTTGGGGAC+TGG | + | chr4.4:42952458-42952477 | MS.gene036455:intron | 30.0% |
| !! | CAATTATAATTTTGGGGACT+GGG | + | chr4.4:42952459-42952478 | MS.gene036455:intron | 30.0% |
| AAAACATGTATGTACGTGCT+CGG | - | chr4.4:42952650-42952669 | None:intergenic | 35.0% | |
| AAGTTAAAACTCCCGATAAG+AGG | - | chr4.4:42952566-42952585 | None:intergenic | 35.0% | |
| ACAACTTCACCAACAAAGAT+TGG | - | chr4.4:42952684-42952703 | None:intergenic | 35.0% | |
| AGAAACAAAAGACAGCATTG+AGG | + | chr4.4:42951568-42951587 | MS.gene036455:CDS | 35.0% | |
| ATATCACCTATGCTCCAATA+AGG | - | chr4.4:42952538-42952557 | None:intergenic | 35.0% | |
| CAACCATTCATGAAAAGTCA+AGG | - | chr4.4:42952767-42952786 | None:intergenic | 35.0% | |
| CTAATAGCTCTTGTCTTCTT+GGG | - | chr4.4:42951636-42951655 | None:intergenic | 35.0% | |
| CTGCTCAATTACTCTAGATA+GGG | + | chr4.4:42951905-42951924 | MS.gene036455:intron | 35.0% | |
| GCATTGAGGGAAGTTTATAA+GGG | + | chr4.4:42951582-42951601 | MS.gene036455:CDS | 35.0% | |
| GTAAGTGTTTCTCTCTATGA+AGG | + | chr4.4:42951700-42951719 | MS.gene036455:intron | 35.0% | |
| GTTAATTTAAATACGCGGCT+GGG | + | chr4.4:42951191-42951210 | MS.gene036455:intron | 35.0% | |
| TAATGGCATACTTTCTCACT+GGG | - | chr4.4:42952899-42952918 | None:intergenic | 35.0% | |
| TATAGATGATATACTCCCTC+CGG | + | chr4.4:42951283-42951302 | MS.gene036455:intron | 35.0% | |
| TCTAATAGCTCTTGTCTTCT+TGG | - | chr4.4:42951637-42951656 | None:intergenic | 35.0% | |
| TCTGCTCAATTACTCTAGAT+AGG | + | chr4.4:42951904-42951923 | MS.gene036455:intron | 35.0% | |
| TGTTAATTTAAATACGCGGC+TGG | + | chr4.4:42951190-42951209 | MS.gene036455:intron | 35.0% | |
| TTAATGGCATACTTTCTCAC+TGG | - | chr4.4:42952900-42952919 | None:intergenic | 35.0% | |
| TTATTCTTGGTAAGCTGAGA+CGG | + | chr4.4:42951764-42951783 | MS.gene036455:intron | 35.0% | |
| TTTGAACGCAATAGCTATCA+AGG | + | chr4.4:42950968-42950987 | MS.gene036455:intron | 35.0% | |
| ! | ACATCTTGGAAAGCTTGTTT+GGG | - | chr4.4:42951097-42951116 | None:intergenic | 35.0% |
| ! | AGCATTGAGGGAAGTTTATA+AGG | + | chr4.4:42951581-42951600 | MS.gene036455:CDS | 35.0% |
| ! | AGTGAGAAAGTATGCCATTA+AGG | + | chr4.4:42952899-42952918 | MS.gene036455:CDS | 35.0% |
| ! | GAAACAAAAGACAGCATTGA+GGG | + | chr4.4:42951569-42951588 | MS.gene036455:CDS | 35.0% |
| ! | TACATCTTGGAAAGCTTGTT+TGG | - | chr4.4:42951098-42951117 | None:intergenic | 35.0% |
| !! | CTTAATCTTTGACTTGCTGA+AGG | - | chr4.4:42952317-42952336 | None:intergenic | 35.0% |
| !! | GTAAGTTGGTCCTCATTTAA+TGG | - | chr4.4:42952376-42952395 | None:intergenic | 35.0% |
| !!! | CTTTTAAGGCCAATCTTTGT+TGG | + | chr4.4:42952672-42952691 | MS.gene036455:intron | 35.0% |
| AAACATGTATGTACGTGCTC+GGG | - | chr4.4:42952649-42952668 | None:intergenic | 40.0% | |
| AGATTAAGCTTGAACCTGCA+TGG | + | chr4.4:42952329-42952348 | MS.gene036455:intron | 40.0% | |
| AGCGGAAAATGCATACATCT+TGG | - | chr4.4:42951111-42951130 | None:intergenic | 40.0% | |
| ATATTGTCCATCGCAGATGA+CGG | - | chr4.4:42952120-42952139 | None:intergenic | 40.0% | |
| ATCTGCGATGGACAATATTG+TGG | + | chr4.4:42952122-42952141 | MS.gene036455:intron | 40.0% | |
| ATGGTTTAGGCCACAAAATG+TGG | + | chr4.4:42952348-42952367 | MS.gene036455:intron | 40.0% | |
| CTATCAAGGTTTATGAGCTG+AGG | + | chr4.4:42950982-42951001 | MS.gene036455:CDS | 40.0% | |
| GACAACACTTTGTACTACAG+CGG | - | chr4.4:42952038-42952057 | None:intergenic | 40.0% | |
| GGATCTTAACTGTATGCACT+TGG | + | chr4.4:42952433-42952452 | MS.gene036455:intron | 40.0% | |
| GTGGAAGTAATAGAGGACTT+CGG | - | chr4.4:42952197-42952216 | None:intergenic | 40.0% | |
| GTTATTGTTTGGATGCAGCA+AGG | + | chr4.4:42951503-42951522 | MS.gene036455:intron | 40.0% | |
| TATTCTTGGTAAGCTGAGAC+GGG | + | chr4.4:42951765-42951784 | MS.gene036455:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr4.4:42951456-42951437 | None:intergenic | 40.0% | |
| TGGAAGTAATAGAGGACTTC+GGG | - | chr4.4:42952196-42952215 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr4.4:42951436-42951455 | MS.gene036455:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr4.4:42951455-42951436 | None:intergenic | 40.0% | |
| ! | AATGTGCCTTATTGGAGCAT+AGG | + | chr4.4:42952529-42952548 | MS.gene036455:intron | 40.0% |
| ! | CATCTTGGAAAGCTTGTTTG+GGG | - | chr4.4:42951096-42951115 | None:intergenic | 40.0% |
| ! | GTGCCTTGACTTTTCATGAA+TGG | + | chr4.4:42952761-42952780 | MS.gene036455:intron | 40.0% |
| ! | GTTGTAGAGTTTTGCTGCAA+TGG | + | chr4.4:42952494-42952513 | MS.gene036455:intron | 40.0% |
| !! | TTAGGGAAGTGTTTGTCTCA+AGG | - | chr4.4:42952252-42952271 | None:intergenic | 40.0% |
| !! | TTTGACTTGCTGAAGGAATG+TGG | - | chr4.4:42952310-42952329 | None:intergenic | 40.0% |
| AAGTAATAGAGGACTTCGGG+AGG | - | chr4.4:42952193-42952212 | None:intergenic | 45.0% | |
| AGCTTGAACCTGCATGGTTT+AGG | + | chr4.4:42952335-42952354 | MS.gene036455:intron | 45.0% | |
| AGTGTTGTCAGTCGCTATTG+CGG | + | chr4.4:42952049-42952068 | MS.gene036455:intron | 45.0% | |
| CATGTACCTGATGCTTAGTG+AGG | - | chr4.4:42951665-42951684 | None:intergenic | 45.0% | |
| CGGATAGCAGAACAATACAC+AGG | - | chr4.4:42952018-42952037 | None:intergenic | 45.0% | |
| GACAAACACTTCCCTAAGCT+TGG | + | chr4.4:42952255-42952274 | MS.gene036455:intron | 45.0% | |
| GCTATAGCGTGGTAGTATAG+CGG | + | chr4.4:42952073-42952092 | MS.gene036455:intron | 45.0% | |
| GGAGCAAGTGGAAGTAATAG+AGG | - | chr4.4:42952204-42952223 | None:intergenic | 45.0% | |
| TAGCTCTTGTCTTCTTGGGA+CGG | - | chr4.4:42951632-42951651 | None:intergenic | 45.0% | |
| TTGGATGCAGCAAGGTTGTT+CGG | + | chr4.4:42951511-42951530 | MS.gene036455:intron | 45.0% | |
| ! | CTATTTTCCGTCATCTGCGA+TGG | + | chr4.4:42952110-42952129 | MS.gene036455:intron | 45.0% |
| ! | GAAGTGTTTGTCTCAAGGAG+GGG | - | chr4.4:42952247-42952266 | None:intergenic | 45.0% |
| ! | TTTTGTGGCCTAAACCATGC+AGG | - | chr4.4:42952346-42952365 | None:intergenic | 45.0% |
| !! | ATTTTGGGGACTGGGGAAAT+TGG | + | chr4.4:42952467-42952486 | MS.gene036455:intron | 45.0% |
| !! | GGAAGTGTTTGTCTCAAGGA+GGG | - | chr4.4:42952248-42952267 | None:intergenic | 45.0% |
| !! | TAGCAACAACTTGCTACCTC+CGG | - | chr4.4:42951455-42951474 | None:intergenic | 45.0% |
| !! | TCGCAGATGACGGAAAATAG+CGG | - | chr4.4:42952110-42952129 | None:intergenic | 45.0% |
| AAGACGCCTCACTAAGCATC+AGG | + | chr4.4:42951656-42951675 | MS.gene036455:CDS | 50.0% | |
| ACTTCCCTAAGCTTGGAACG+TGG | + | chr4.4:42952262-42952281 | MS.gene036455:intron | 50.0% | |
| ATAGAGGACTTCGGGAGGAA+AGG | - | chr4.4:42952188-42952207 | None:intergenic | 50.0% | |
| ATCTGCCACGTTCCAAGCTT+AGG | - | chr4.4:42952270-42952289 | None:intergenic | 50.0% | |
| GACAGAGCGTGAGAAGAAGA+AGG | + | chr4.4:42952863-42952882 | MS.gene036455:CDS | 50.0% | |
| TAGAGGACTTCGGGAGGAAA+GGG | - | chr4.4:42952187-42952206 | None:intergenic | 50.0% | |
| TCTGCCACGTTCCAAGCTTA+GGG | - | chr4.4:42952269-42952288 | None:intergenic | 50.0% | |
| TGTTTGTCTCAAGGAGGGGA+GGG | - | chr4.4:42952243-42952262 | None:intergenic | 50.0% | |
| TTCTTGGGACGGAGATCCAA+AGG | - | chr4.4:42951621-42951640 | None:intergenic | 50.0% | |
| !! | GGGAAGTGTTTGTCTCAAGG+AGG | - | chr4.4:42952249-42952268 | None:intergenic | 50.0% |
| !! | GGGCAAGAAGTACTTGCCTT+TGG | + | chr4.4:42951602-42951621 | MS.gene036455:CDS | 50.0% |
| CTTCGCGTTGCGAAAGTCAC+CGG | + | chr4.4:42951065-42951084 | MS.gene036455:CDS | 55.0% | |
| GGAAAGGAGGAAGGAGCAAG+TGG | - | chr4.4:42952216-42952235 | None:intergenic | 55.0% | |
| GTGTTTGTCTCAAGGAGGGG+AGG | - | chr4.4:42952244-42952263 | None:intergenic | 55.0% | |
| TTCGGGAGGAAAGGGCTTTG+CGG | - | chr4.4:42952179-42952198 | None:intergenic | 55.0% | |
| !! | GCTATTGCGGTGCTATAGCG+TGG | + | chr4.4:42952062-42952081 | MS.gene036455:intron | 55.0% |
| GAGGGCTGTGGAAAGGAGGA+AGG | - | chr4.4:42952225-42952244 | None:intergenic | 60.0% | |
| !! | AAGCTTGTTTGGGGCACCGC+CGG | - | chr4.4:42951087-42951106 | None:intergenic | 60.0% |
| AGGAGGGGAGGGCTGTGGAA+AGG | - | chr4.4:42952232-42952251 | None:intergenic | 65.0% | |
| AGGGGAGGGCTGTGGAAAGG+AGG | - | chr4.4:42952229-42952248 | None:intergenic | 65.0% | |
| CGCGTTGCGAAAGTCACCGG+CGG | + | chr4.4:42951068-42951087 | MS.gene036455:CDS | 65.0% | |
| TCTCAAGGAGGGGAGGGCTG+TGG | - | chr4.4:42952237-42952256 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 42950868 | 42952926 | 42950868 | ID=MS.gene036455 |
| chr4.4 | mRNA | 42950868 | 42952926 | 42950868 | ID=MS.gene036455.t1;Parent=MS.gene036455 |
| chr4.4 | exon | 42950868 | 42950871 | 42950868 | ID=MS.gene036455.t1.exon1;Parent=MS.gene036455.t1 |
| chr4.4 | CDS | 42950868 | 42950871 | 42950868 | ID=cds.MS.gene036455.t1;Parent=MS.gene036455.t1 |
| chr4.4 | exon | 42950982 | 42951114 | 42950982 | ID=MS.gene036455.t1.exon2;Parent=MS.gene036455.t1 |
| chr4.4 | CDS | 42950982 | 42951114 | 42950982 | ID=cds.MS.gene036455.t1;Parent=MS.gene036455.t1 |
| chr4.4 | exon | 42951521 | 42951677 | 42951521 | ID=MS.gene036455.t1.exon3;Parent=MS.gene036455.t1 |
| chr4.4 | CDS | 42951521 | 42951677 | 42951521 | ID=cds.MS.gene036455.t1;Parent=MS.gene036455.t1 |
| chr4.4 | exon | 42952852 | 42952926 | 42952852 | ID=MS.gene036455.t1.exon4;Parent=MS.gene036455.t1 |
| chr4.4 | CDS | 42952852 | 42952926 | 42952852 | ID=cds.MS.gene036455.t1;Parent=MS.gene036455.t1 |
| Gene Sequence |
| Protein sequence |
