Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02264.t1 | XP_003593373.1 | 95.2 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 1.80E-59 | 238.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02264.t1 | Q8LDI5 | 67.9 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 1.5e-38 | 160.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02264.t1 | B7FIZ6 | 95.2 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 1.3e-59 | 238.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene064706 | MS.gene02264 | PPI |
MS.gene043301 | MS.gene02264 | PPI |
MS.gene27271 | MS.gene02264 | PPI |
MS.gene42302 | MS.gene02264 | PPI |
MS.gene69451 | MS.gene02264 | PPI |
MS.gene79654 | MS.gene02264 | PPI |
MS.gene24227 | MS.gene02264 | PPI |
MS.gene74758 | MS.gene02264 | PPI |
MS.gene014475 | MS.gene02264 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02264.t1 | MTR_2g010750 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 7.66e-85 | 243 |
MS.gene02264.t1 | MTR_4g081380 | 59.322 | 118 | 48 | 0 | 5 | 122 | 6 | 123 | 2.52e-50 | 156 |
MS.gene02264.t1 | MTR_2g082590 | 60.714 | 112 | 44 | 0 | 8 | 119 | 9 | 120 | 1.80e-49 | 154 |
MS.gene02264.t1 | MTR_2g010750 | 91.139 | 79 | 7 | 0 | 1 | 79 | 1 | 79 | 5.75e-49 | 151 |
MS.gene02264.t1 | MTR_2g082590 | 54.400 | 125 | 44 | 1 | 8 | 119 | 9 | 133 | 1.59e-45 | 144 |
MS.gene02264.t1 | MTR_4g081380 | 62.857 | 70 | 26 | 0 | 5 | 74 | 6 | 75 | 6.50e-28 | 98.6 |
MS.gene02264.t1 | MTR_1g023140 | 41.346 | 104 | 61 | 0 | 9 | 112 | 6 | 109 | 1.53e-26 | 95.9 |
MS.gene02264.t1 | MTR_8g005320 | 37.500 | 112 | 70 | 0 | 1 | 112 | 18 | 129 | 3.84e-26 | 95.5 |
MS.gene02264.t1 | MTR_3g112410 | 40.952 | 105 | 62 | 0 | 8 | 112 | 5 | 109 | 1.44e-25 | 93.2 |
MS.gene02264.t1 | MTR_8g006685 | 36.842 | 114 | 72 | 0 | 1 | 114 | 87 | 200 | 4.31e-25 | 94.7 |
MS.gene02264.t1 | MTR_8g006560 | 36.842 | 114 | 72 | 0 | 1 | 114 | 87 | 200 | 4.31e-25 | 94.7 |
MS.gene02264.t1 | MTR_7g073680 | 35.897 | 117 | 75 | 0 | 2 | 118 | 17 | 133 | 6.97e-25 | 92.4 |
MS.gene02264.t1 | MTR_5g021180 | 40.541 | 111 | 66 | 0 | 8 | 118 | 7 | 117 | 7.27e-25 | 91.7 |
MS.gene02264.t1 | MTR_7g009070 | 39.362 | 94 | 57 | 0 | 20 | 113 | 37 | 130 | 1.91e-24 | 90.9 |
MS.gene02264.t1 | MTR_5g037950 | 40.000 | 105 | 63 | 0 | 9 | 113 | 19 | 123 | 1.19e-18 | 75.9 |
MS.gene02264.t1 | MTR_8g107460 | 32.692 | 104 | 70 | 0 | 9 | 112 | 254 | 357 | 7.80e-18 | 77.8 |
MS.gene02264.t1 | MTR_5g037930 | 37.143 | 105 | 66 | 0 | 9 | 113 | 20 | 124 | 9.63e-17 | 71.2 |
MS.gene02264.t1 | MTR_5g037890 | 39.048 | 105 | 64 | 0 | 9 | 113 | 18 | 122 | 2.39e-16 | 70.1 |
MS.gene02264.t1 | MTR_1g098660 | 34.091 | 88 | 56 | 2 | 28 | 113 | 75 | 162 | 4.71e-14 | 65.1 |
MS.gene02264.t1 | MTR_4g088905 | 33.708 | 89 | 59 | 0 | 24 | 112 | 14 | 102 | 2.00e-13 | 65.9 |
MS.gene02264.t1 | MTR_8g059015 | 35.632 | 87 | 54 | 2 | 32 | 116 | 90 | 176 | 4.47e-12 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02264.t1 | AT1G11530 | 67.857 | 112 | 36 | 0 | 9 | 120 | 2 | 113 | 4.81e-53 | 162 |
MS.gene02264.t1 | AT3G51030 | 41.905 | 105 | 61 | 0 | 8 | 112 | 5 | 109 | 3.78e-27 | 97.4 |
MS.gene02264.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.91e-25 | 93.6 |
MS.gene02264.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 8 | 111 | 39 | 142 | 2.91e-25 | 93.6 |
MS.gene02264.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.90e-25 | 93.2 |
MS.gene02264.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.90e-25 | 93.2 |
MS.gene02264.t1 | AT3G56420 | 38.095 | 105 | 65 | 0 | 7 | 111 | 38 | 142 | 3.90e-25 | 93.2 |
MS.gene02264.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.15e-24 | 91.3 |
MS.gene02264.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.15e-24 | 91.3 |
MS.gene02264.t1 | AT3G08710 | 35.246 | 122 | 79 | 0 | 1 | 122 | 15 | 136 | 2.15e-24 | 91.3 |
MS.gene02264.t1 | AT1G45145 | 35.849 | 106 | 68 | 0 | 7 | 112 | 3 | 108 | 2.27e-22 | 85.1 |
MS.gene02264.t1 | AT5G39950 | 36.111 | 108 | 69 | 0 | 5 | 112 | 21 | 128 | 2.43e-22 | 85.5 |
MS.gene02264.t1 | AT1G59730 | 38.835 | 103 | 63 | 0 | 11 | 113 | 23 | 125 | 4.36e-21 | 82.4 |
MS.gene02264.t1 | AT1G19730 | 40.426 | 94 | 55 | 1 | 20 | 112 | 17 | 110 | 5.19e-21 | 81.6 |
MS.gene02264.t1 | AT5G42980 | 34.906 | 106 | 69 | 0 | 8 | 113 | 4 | 109 | 1.68e-19 | 77.8 |
MS.gene02264.t1 | AT1G69880 | 29.464 | 112 | 79 | 0 | 7 | 118 | 35 | 146 | 3.97e-18 | 75.1 |
MS.gene02264.t1 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 261 | 366 | 5.48e-17 | 75.5 |
MS.gene02264.t1 | AT3G17880 | 32.075 | 106 | 72 | 0 | 7 | 112 | 268 | 373 | 5.87e-17 | 75.5 |
MS.gene02264.t1 | AT1G43560 | 34.066 | 91 | 58 | 2 | 29 | 117 | 74 | 164 | 1.79e-13 | 63.5 |
MS.gene02264.t1 | AT1G76760 | 33.333 | 87 | 56 | 2 | 29 | 113 | 79 | 165 | 2.44e-13 | 63.5 |
MS.gene02264.t1 | AT4G32580 | 32.143 | 84 | 57 | 0 | 29 | 112 | 19 | 102 | 2.61e-13 | 63.2 |
MS.gene02264.t1 | AT4G04950 | 34.146 | 82 | 54 | 0 | 31 | 112 | 21 | 102 | 4.28e-13 | 64.7 |
MS.gene02264.t1 | AT1G52990 | 30.208 | 96 | 66 | 1 | 22 | 116 | 218 | 313 | 4.39e-13 | 64.3 |
MS.gene02264.t1 | AT3G15360 | 36.047 | 86 | 53 | 2 | 33 | 116 | 106 | 191 | 8.33e-13 | 62.4 |
MS.gene02264.t1 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 2.48e-12 | 61.2 |
MS.gene02264.t1 | AT2G35010 | 30.476 | 105 | 71 | 1 | 11 | 113 | 86 | 190 | 2.48e-12 | 61.2 |
MS.gene02264.t1 | AT1G31020 | 29.730 | 111 | 76 | 1 | 5 | 113 | 45 | 155 | 5.29e-12 | 59.7 |
MS.gene02264.t1 | AT3G53220 | 25.893 | 112 | 81 | 1 | 1 | 112 | 13 | 122 | 5.53e-12 | 58.9 |
Find 23 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTCACTTTACTGCTTCA+TGG | 0.264633 | 2.1:+72858209 | MS.gene02264:CDS |
CATTGCCTTTATATCATTCC+TGG | 0.272354 | 2.1:-72859647 | None:intergenic |
GAGATTAAGAAAAGGATAGA+AGG | 0.306679 | 2.1:+72859733 | MS.gene02264:CDS |
ACAGAGAGAAACAGAAAATC+TGG | 0.372687 | 2.1:-72858286 | None:intergenic |
GAGAATTCTGATTAGAAGCT+TGG | 0.402282 | 2.1:-72858081 | None:intergenic |
GGCCACCAGGAATGATATAA+AGG | 0.411501 | 2.1:+72859642 | MS.gene02264:CDS |
TGATTGATTCTTTGCAATCA+TGG | 0.469609 | 2.1:+72858044 | MS.gene02264:CDS |
CGGTTCAGGAGGTGGCCACC+AGG | 0.479869 | 2.1:+72859629 | MS.gene02264:intron |
AGATTAAGAAAAGGATAGAA+GGG | 0.491722 | 2.1:+72859734 | MS.gene02264:CDS |
GCTGAAGGATGGTGCTCCAT+TGG | 0.519133 | 2.1:+72859684 | MS.gene02264:CDS |
AGAATCAATCACCACTACCT+TGG | 0.527546 | 2.1:-72858032 | None:intergenic |
GCAAAACAAGTCCAAGGTAG+TGG | 0.548033 | 2.1:+72858021 | MS.gene02264:CDS |
GATTGATTCTTTGCAATCAT+GGG | 0.549324 | 2.1:+72858045 | MS.gene02264:CDS |
ATCCAGAGGAGATTAAGAAA+AGG | 0.550537 | 2.1:+72859725 | MS.gene02264:CDS |
TGCCTTTATATCATTCCTGG+TGG | 0.582723 | 2.1:-72859644 | None:intergenic |
AATGGAATCATAGCCACTGA+TGG | 0.585805 | 2.1:-72858238 | None:intergenic |
GCACCAACTATCTTGTCCAA+TGG | 0.587312 | 2.1:-72859700 | None:intergenic |
TTCATGGTGCATGCCATCAG+TGG | 0.591969 | 2.1:+72858225 | MS.gene02264:CDS |
GCTCCATTGGACAAGATAGT+TGG | 0.601256 | 2.1:+72859697 | MS.gene02264:CDS |
CATAGAGCAAAACAAGTCCA+AGG | 0.613866 | 2.1:+72858015 | MS.gene02264:CDS |
TGTTGATGTTGATGAAGTCA+AGG | 0.653275 | 2.1:+72858306 | MS.gene02264:CDS |
CTAGGCAATTGATTCGCGAG+TGG | 0.669856 | 2.1:-72859767 | None:intergenic |
GATAGTTGGTGCTAATCCAG+AGG | 0.694394 | 2.1:+72859711 | MS.gene02264:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGTAGTTATACATATATAT+AGG | + | chr2.1:72859242-72859261 | MS.gene02264:intron | 15.0% |
!!! | AAATGCATTGAAATTTTTTT+GGG | + | chr2.1:72859605-72859624 | MS.gene02264:intron | 15.0% |
!!! | TAAATGCATTGAAATTTTTT+TGG | + | chr2.1:72859604-72859623 | MS.gene02264:intron | 15.0% |
!! | GACTGTTTATAAAGAATTAA+AGG | - | chr2.1:72858147-72858166 | None:intergenic | 20.0% |
!! | TACAAGAATTGAAAACAAAT+GGG | - | chr2.1:72858344-72858363 | None:intergenic | 20.0% |
!!! | AATGCATTGAAATTTTTTTG+GGG | + | chr2.1:72859606-72859625 | MS.gene02264:intron | 20.0% |
!!! | ATTATATGACTGAATTTTGT+TGG | - | chr2.1:72858636-72858655 | None:intergenic | 20.0% |
!!! | CAATGTTTTTAAAACTTACT+CGG | + | chr2.1:72858120-72858139 | MS.gene02264:intron | 20.0% |
! | AAAATAAAAACAGCAATCTC+TGG | + | chr2.1:72858857-72858876 | MS.gene02264:intron | 25.0% |
! | AGATTAAGAAAAGGATAGAA+GGG | + | chr2.1:72859734-72859753 | MS.gene02264:CDS | 25.0% |
! | CTACAAGAATTGAAAACAAA+TGG | - | chr2.1:72858345-72858364 | None:intergenic | 25.0% |
! | TGATGTGTTTAGATATGTAA+TGG | - | chr2.1:72858421-72858440 | None:intergenic | 25.0% |
!! | TGAAACAGAAAAGTTTTTGT+TGG | + | chr2.1:72859544-72859563 | MS.gene02264:intron | 25.0% |
!!! | GATTGCTGTTTTTATTTTGA+AGG | - | chr2.1:72858855-72858874 | None:intergenic | 25.0% |
ATGGTATCAGTACAGAATTT+AGG | - | chr2.1:72858905-72858924 | None:intergenic | 30.0% | |
ATTCCTCTTGAACAACTAAA+TGG | + | chr2.1:72858820-72858839 | MS.gene02264:intron | 30.0% | |
ATTCTCTACAGATATAACCT+GGG | + | chr2.1:72859039-72859058 | MS.gene02264:intron | 30.0% | |
GAGATTAAGAAAAGGATAGA+AGG | + | chr2.1:72859733-72859752 | MS.gene02264:CDS | 30.0% | |
GCATATCTATATCCACAAAA+AGG | - | chr2.1:72858496-72858515 | None:intergenic | 30.0% | |
GGTTTAATATTGTGTACTGA+TGG | + | chr2.1:72859577-72859596 | MS.gene02264:intron | 30.0% | |
TATGCTATATGAGAACATTC+TGG | + | chr2.1:72858511-72858530 | MS.gene02264:intron | 30.0% | |
TCAATGCATGAAAATAAGAC+AGG | - | chr2.1:72859527-72859546 | None:intergenic | 30.0% | |
TCAGTAAACATTTGACAAGA+CGG | - | chr2.1:72859389-72859408 | None:intergenic | 30.0% | |
TCTAATCACCATAATGATGT+CGG | - | chr2.1:72858698-72858717 | None:intergenic | 30.0% | |
TGGTATCAGTACAGAATTTA+GGG | - | chr2.1:72858904-72858923 | None:intergenic | 30.0% | |
TTTAGATATGTAATGGTACG+AGG | - | chr2.1:72858414-72858433 | None:intergenic | 30.0% | |
! | ACATTGAAACTTTGACTTAC+AGG | - | chr2.1:72858106-72858125 | None:intergenic | 30.0% |
! | ATTTGAAATCTGGCTTAAAG+GGG | + | chr2.1:72859072-72859091 | MS.gene02264:intron | 30.0% |
! | GAGGAATATTTAAAACGAGA+CGG | - | chr2.1:72858807-72858826 | None:intergenic | 30.0% |
! | GATTGATTCTTTGCAATCAT+GGG | + | chr2.1:72858045-72858064 | MS.gene02264:CDS | 30.0% |
! | GATTTGAAATCTGGCTTAAA+GGG | + | chr2.1:72859071-72859090 | MS.gene02264:intron | 30.0% |
! | GTTTTTGTTGGTGTGATTAA+TGG | + | chr2.1:72859556-72859575 | MS.gene02264:intron | 30.0% |
! | TGATTGATTCTTTGCAATCA+TGG | + | chr2.1:72858044-72858063 | MS.gene02264:CDS | 30.0% |
! | TGGAAATCAAAACCTTTTTG+TGG | + | chr2.1:72858481-72858500 | MS.gene02264:intron | 30.0% |
! | TTCAAGTTCCAATTTCCAAT+TGG | - | chr2.1:72858770-72858789 | None:intergenic | 30.0% |
AAAAACAGCAATCTCTGGTT+TGG | + | chr2.1:72858862-72858881 | MS.gene02264:intron | 35.0% | |
AAAGGAAAAGCTCAATTCAC+AGG | - | chr2.1:72859360-72859379 | None:intergenic | 35.0% | |
AAATGTTTACCGTTTCTACG+CGG | + | chr2.1:72859438-72859457 | MS.gene02264:intron | 35.0% | |
ACAGAGAGAAACAGAAAATC+TGG | - | chr2.1:72858289-72858308 | None:intergenic | 35.0% | |
ACTTGGGATACTGTTCTTTA+TGG | - | chr2.1:72858924-72858943 | None:intergenic | 35.0% | |
ATCCAGAGGAGATTAAGAAA+AGG | + | chr2.1:72859725-72859744 | MS.gene02264:CDS | 35.0% | |
ATGGAAATCCGACATCATTA+TGG | + | chr2.1:72858687-72858706 | MS.gene02264:intron | 35.0% | |
ATTAGTTATCCGCGTAGAAA+CGG | - | chr2.1:72859450-72859469 | None:intergenic | 35.0% | |
CAACCATTTAGTTGTTCAAG+AGG | - | chr2.1:72858826-72858845 | None:intergenic | 35.0% | |
CAGTTGCAACTTGTAGTAAA+AGG | - | chr2.1:72858608-72858627 | None:intergenic | 35.0% | |
CATTGCCTTTATATCATTCC+TGG | - | chr2.1:72859650-72859669 | None:intergenic | 35.0% | |
CTATGTCGAGTCAAAATCAA+TGG | - | chr2.1:72859151-72859170 | None:intergenic | 35.0% | |
CTGTAGAGAATCAATTTCAG+TGG | - | chr2.1:72859030-72859049 | None:intergenic | 35.0% | |
GAGAATTCTGATTAGAAGCT+TGG | - | chr2.1:72858084-72858103 | None:intergenic | 35.0% | |
GATGCGAATTCTTCGAAAAA+TGG | - | chr2.1:72858259-72858278 | None:intergenic | 35.0% | |
GATTCTCTACAGATATAACC+TGG | + | chr2.1:72859038-72859057 | MS.gene02264:intron | 35.0% | |
TCCTTCAGCAACAAAAATGT+TGG | - | chr2.1:72859673-72859692 | None:intergenic | 35.0% | |
TCGAGTCAAAATCAATGGTA+CGG | - | chr2.1:72859146-72859165 | None:intergenic | 35.0% | |
TGCAGGTACAAAAAACCAAT+GGG | + | chr2.1:72859118-72859137 | MS.gene02264:intron | 35.0% | |
TTCTACGCGGATAACTAATA+TGG | + | chr2.1:72859451-72859470 | MS.gene02264:intron | 35.0% | |
TTGCAGGTACAAAAAACCAA+TGG | + | chr2.1:72859117-72859136 | MS.gene02264:intron | 35.0% | |
TTGTTCACTTTACTGCTTCA+TGG | + | chr2.1:72858209-72858228 | MS.gene02264:CDS | 35.0% | |
TTTGAGAGAATCTGCTTGTA+TGG | + | chr2.1:72858725-72858744 | MS.gene02264:intron | 35.0% | |
! | ACATTTTTGTTGCTGAAGGA+TGG | + | chr2.1:72859673-72859692 | MS.gene02264:CDS | 35.0% |
! | AGTGTCCATTGTAGAGTATT+CGG | + | chr2.1:72858664-72858683 | MS.gene02264:intron | 35.0% |
! | ATCCTTTTCTTAATCTCCTC+TGG | - | chr2.1:72859730-72859749 | None:intergenic | 35.0% |
! | CTCTGATACCTTCTAAAGAA+CGG | + | chr2.1:72859179-72859198 | MS.gene02264:intron | 35.0% |
! | GGATTTGAAATCTGGCTTAA+AGG | + | chr2.1:72859070-72859089 | MS.gene02264:intron | 35.0% |
! | TGTCATTGATCATGTCACTT+GGG | - | chr2.1:72858940-72858959 | None:intergenic | 35.0% |
! | TGTTGATGTTGATGAAGTCA+AGG | + | chr2.1:72858306-72858325 | MS.gene02264:CDS | 35.0% |
! | TTATGGTGCCAATTGGAAAT+TGG | + | chr2.1:72858759-72858778 | MS.gene02264:intron | 35.0% |
!! | AGCATGATGGATTTGAAATC+TGG | + | chr2.1:72859062-72859081 | MS.gene02264:intron | 35.0% |
!! | CAATCTGTTTCTGAGCATTA+GGG | - | chr2.1:72859326-72859345 | None:intergenic | 35.0% |
!! | CAGTCTTCAAATTGATTTGC+TGG | + | chr2.1:72858162-72858181 | MS.gene02264:intron | 35.0% |
!! | GGAACTTGAATTTTAGAGAG+AGG | + | chr2.1:72858780-72858799 | MS.gene02264:intron | 35.0% |
!!! | GCATTGAAATTTTTTTGGGG+CGG | + | chr2.1:72859609-72859628 | MS.gene02264:intron | 35.0% |
AATGCTCAGAAACAGATTGC+TGG | + | chr2.1:72859327-72859346 | MS.gene02264:intron | 40.0% | |
AATGGAATCATAGCCACTGA+TGG | - | chr2.1:72858241-72858260 | None:intergenic | 40.0% | |
AGAATCAATCACCACTACCT+TGG | - | chr2.1:72858035-72858054 | None:intergenic | 40.0% | |
CATAGAGCAAAACAAGTCCA+AGG | + | chr2.1:72858015-72858034 | MS.gene02264:CDS | 40.0% | |
CTGGGTCTATTTGCATAACA+TGG | - | chr2.1:72858996-72859015 | None:intergenic | 40.0% | |
CTGTCAACTTTCTGTTTGAG+TGG | + | chr2.1:72858461-72858480 | MS.gene02264:intron | 40.0% | |
CTGTCATTGATCATGTCACT+TGG | - | chr2.1:72858941-72858960 | None:intergenic | 40.0% | |
CTTTCCATCCGTTCTTTAGA+AGG | - | chr2.1:72859190-72859209 | None:intergenic | 40.0% | |
TAACTTATGAGACGTCTTGC+AGG | + | chr2.1:72859101-72859120 | MS.gene02264:intron | 40.0% | |
TCCATCCGAATACTCTACAA+TGG | - | chr2.1:72858672-72858691 | None:intergenic | 40.0% | |
TGCCTTTATATCATTCCTGG+TGG | - | chr2.1:72859647-72859666 | None:intergenic | 40.0% | |
! | CTTCTAAAGAACGGATGGAA+AGG | + | chr2.1:72859188-72859207 | MS.gene02264:intron | 40.0% |
! | GATACCTTCTAAAGAACGGA+TGG | + | chr2.1:72859183-72859202 | MS.gene02264:intron | 40.0% |
! | GCCAACATTTTTGTTGCTGA+AGG | + | chr2.1:72859669-72859688 | MS.gene02264:CDS | 40.0% |
! | TCCATTGTAGAGTATTCGGA+TGG | + | chr2.1:72858668-72858687 | MS.gene02264:intron | 40.0% |
!! | GCAATCTGTTTCTGAGCATT+AGG | - | chr2.1:72859327-72859346 | None:intergenic | 40.0% |
!!! | AAATTTTTTTGGGGCGGTTC+AGG | + | chr2.1:72859615-72859634 | MS.gene02264:intron | 40.0% |
!!! | CTTGGACTTGTTTTGCTCTA+TGG | - | chr2.1:72858017-72858036 | None:intergenic | 40.0% |
AGAATCTGCTTGTATGGCGA+AGG | + | chr2.1:72858731-72858750 | MS.gene02264:intron | 45.0% | |
ATCAATGGTACGGATCCCAT+TGG | - | chr2.1:72859136-72859155 | None:intergenic | 45.0% | |
CGATGTCAAAAGAGTAGCTG+AGG | - | chr2.1:72858970-72858989 | None:intergenic | 45.0% | |
GCAAAACAAGTCCAAGGTAG+TGG | + | chr2.1:72858021-72858040 | MS.gene02264:CDS | 45.0% | |
GCAAATAGACCCAGTCTTCA+CGG | + | chr2.1:72859002-72859021 | MS.gene02264:intron | 45.0% | |
GCACCAACTATCTTGTCCAA+TGG | - | chr2.1:72859703-72859722 | None:intergenic | 45.0% | |
GCTCCATTGGACAAGATAGT+TGG | + | chr2.1:72859697-72859716 | MS.gene02264:CDS | 45.0% | |
GGCCACCAGGAATGATATAA+AGG | + | chr2.1:72859642-72859661 | MS.gene02264:CDS | 45.0% | |
TTCAAATCCATCATGCTCCC+AGG | - | chr2.1:72859059-72859078 | None:intergenic | 45.0% | |
TTGACAAGACGGTCGCTAAA+AGG | - | chr2.1:72859378-72859397 | None:intergenic | 45.0% | |
! | GATATAACCTGGGAGCATGA+TGG | + | chr2.1:72859049-72859068 | MS.gene02264:intron | 45.0% |
! | GGTTTGCTTATGGTGCCAAT+TGG | + | chr2.1:72858752-72858771 | MS.gene02264:intron | 45.0% |
! | GTATGGCGAAGGTTTGCTTA+TGG | + | chr2.1:72858742-72858761 | MS.gene02264:intron | 45.0% |
!! | GATAGTTGGTGCTAATCCAG+AGG | + | chr2.1:72859711-72859730 | MS.gene02264:CDS | 45.0% |
ATGTAGCCCACCACACTTAG+TGG | + | chr2.1:72858553-72858572 | MS.gene02264:intron | 50.0% | |
CTTGTCCCACTAAGTGTGGT+GGG | - | chr2.1:72858562-72858581 | None:intergenic | 50.0% | |
TGTAGCCCACCACACTTAGT+GGG | + | chr2.1:72858554-72858573 | MS.gene02264:intron | 50.0% | |
TTCATGGTGCATGCCATCAG+TGG | + | chr2.1:72858225-72858244 | MS.gene02264:CDS | 50.0% | |
! | AAGCCTTGTCCCACTAAGTG+TGG | - | chr2.1:72858566-72858585 | None:intergenic | 50.0% |
!! | CTAGGCAATTGATTCGCGAG+TGG | - | chr2.1:72859770-72859789 | None:intergenic | 50.0% |
!!! | TTTTTTTGGGGCGGTTCAGG+AGG | + | chr2.1:72859618-72859637 | MS.gene02264:intron | 50.0% |
CCACCACACTTAGTGGGACA+AGG | + | chr2.1:72858560-72858579 | MS.gene02264:intron | 55.0% | |
CCTTGTCCCACTAAGTGTGG+TGG | - | chr2.1:72858563-72858582 | None:intergenic | 55.0% | |
GCTGAAGGATGGTGCTCCAT+TGG | + | chr2.1:72859684-72859703 | MS.gene02264:CDS | 55.0% | |
TCAGTGGAGCCGTGAAGACT+GGG | - | chr2.1:72859014-72859033 | None:intergenic | 55.0% | |
TTCAGTGGAGCCGTGAAGAC+TGG | - | chr2.1:72859015-72859034 | None:intergenic | 55.0% | |
!!! | TTTTGGGGCGGTTCAGGAGG+TGG | + | chr2.1:72859621-72859640 | MS.gene02264:intron | 60.0% |
CGGTTCAGGAGGTGGCCACC+AGG | + | chr2.1:72859629-72859648 | MS.gene02264:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 72858007 | 72859789 | 72858007 | ID=MS.gene02264 |
chr2.1 | mRNA | 72858007 | 72859789 | 72858007 | ID=MS.gene02264.t1;Parent=MS.gene02264 |
chr2.1 | exon | 72858007 | 72858105 | 72858007 | ID=MS.gene02264.t1.exon1;Parent=MS.gene02264.t1 |
chr2.1 | CDS | 72858007 | 72858105 | 72858007 | ID=cds.MS.gene02264.t1;Parent=MS.gene02264.t1 |
chr2.1 | exon | 72858205 | 72858327 | 72858205 | ID=MS.gene02264.t1.exon2;Parent=MS.gene02264.t1 |
chr2.1 | CDS | 72858205 | 72858327 | 72858205 | ID=cds.MS.gene02264.t1;Parent=MS.gene02264.t1 |
chr2.1 | exon | 72859637 | 72859789 | 72859637 | ID=MS.gene02264.t1.exon3;Parent=MS.gene02264.t1 |
chr2.1 | CDS | 72859637 | 72859789 | 72859637 | ID=cds.MS.gene02264.t1;Parent=MS.gene02264.t1 |
Gene Sequence |
Protein sequence |