AlfalfaGEDB | MS.gene022751

M. sativa cultivar XinJiangDaYe / MS.gene022751

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022751.t1	XP_013444014.1	97.9	530	10	1	1	529	89	618	1.70E-257	898.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022751.t1	Q9ASS4	63.8	536	181	6	2	526	87	620	2.2e-144	513.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022751.t1	A0A072TLE6	97.9	530	10	1	1	529	89	618	1.3e-257	898.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene022751	MS.gene82663	PPI
MS.gene022751	MS.gene02437	PPI
MS.gene022751	MS.gene30580	PPI
MS.gene022751	MS.gene027143	PPI
MS.gene022751	MS.gene56742	PPI
MS.gene022751	MS.gene047793	PPI
MS.gene022751	MS.gene57987	PPI
MS.gene022751	MS.gene010536	PPI
MS.gene022751	MS.gene010517	PPI
MS.gene022751	MS.gene58223	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022751.t1	MTR_8g010180	97.547	530	12	1	1	529	89	618	0.0	1061
MS.gene022751.t1	MTR_7g080810	77.358	530	115	3	1	528	87	613	0.0	841
MS.gene022751.t1	MTR_6g009370	45.331	514	265	8	1	506	83	588	5.56e-150	443
MS.gene022751.t1	MTR_4g092530	41.098	528	248	11	1	495	66	563	6.16e-121	368
MS.gene022751.t1	MTR_4g092520	39.554	493	257	9	1	489	79	534	2.11e-109	337
MS.gene022751.t1	MTR_1g100787	38.011	563	274	11	3	497	715	1270	1.64e-107	348
MS.gene022751.t1	MTR_1g100787	42.105	114	55	2	3	105	559	672	3.50e-12	69.7
MS.gene022751.t1	MTR_1g100787	37.719	114	70	1	3	116	619	731	1.17e-11	68.2
MS.gene022751.t1	MTR_3g095100	39.479	537	289	12	16	524	651	1179	3.57e-106	343
MS.gene022751.t1	MTR_3g095100	37.008	127	57	1	2	105	425	551	2.66e-14	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene022751.t1	AT5G48380	63.569	538	179	8	2	526	87	620	0.0	681
MS.gene022751.t1	AT1G27190	46.733	505	260	5	1	499	82	583	5.68e-155	456
MS.gene022751.t1	AT3G28450	45.703	512	264	7	1	506	88	591	4.34e-152	448
MS.gene022751.t1	AT1G69990	43.470	513	269	7	1	504	75	575	7.18e-150	442
MS.gene022751.t1	AT5G07280	40.116	516	275	11	3	495	688	1192	2.83e-105	341
MS.gene022751.t1	AT5G07280	37.121	132	69	2	3	120	532	663	4.56e-13	72.8
MS.gene022751.t1	AT5G07280	40.385	104	61	1	3	106	460	562	3.01e-12	70.1
MS.gene022751.t1	AT5G07280	36.207	116	73	1	3	118	592	706	1.07e-11	68.2
MS.gene022751.t1	AT5G07280	45.882	85	45	1	21	105	586	669	4.61e-11	66.2
MS.gene022751.t1	AT3G13380	39.921	506	268	12	16	495	640	1135	2.40e-102	333

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Find 109 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGATATACTTCAAACA+TGG	0.649157	8.1:-85719774	None:intergenic
AAATCTCGTAGAATGGATTA+CGG	0.507751	8.1:+85719619	MS.gene022751:CDS
AAATGCCGTGCCGTCATCAA+GGG	0.577724	8.1:-85719030	None:intergenic
AAATGGGCAAGAAGTCTTAA+AGG	0.309464	8.1:+85717948	MS.gene022751:CDS
AACATGGTTGGCCTCTCCTT+TGG	0.341469	8.1:-85719758	None:intergenic
AACGGTGAATTTGGCGATTT+TGG	0.136780	8.1:+85719458	MS.gene022751:CDS
AACTTTGGTTGCTACGCCAA+AGG	0.491196	8.1:+85719505	MS.gene022751:CDS
AAGAAGGAAGAAGATCCTGA+AGG	0.645174	8.1:+85717921	MS.gene022751:CDS
AAGATCCTGAAGGAAACAAA+TGG	0.451671	8.1:+85717931	MS.gene022751:CDS
AAGCTCTAAGTGCATCTTGT+TGG	0.410446	8.1:+85719352	MS.gene022751:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCACTAGTGAAACTGTTT+GGG	-	chr8.1:85718346-85718365	None:intergenic	30.0%
AGAAGTCTTAAAGGAACTAA+AGG	+	chr8.1:85717957-85717976	MS.gene022751:CDS	30.0%
ATCTTATAATTAGGACCAGA+GGG	-	chr8.1:85718638-85718657	None:intergenic	30.0%
ATTTATGGTGAAAAGATTGC+AGG	+	chr8.1:85719049-85719068	MS.gene022751:CDS	30.0%
CCAAACTGAAGATGAAATAT+TGG	+	chr8.1:85719826-85719845	MS.gene022751:CDS	30.0%
CCAATATTTCATCTTCAGTT+TGG	-	chr8.1:85719829-85719848	None:intergenic	30.0%
TAATAGTAGAGGAATTTGAC+CGG	-	chr8.1:85717634-85717653	None:intergenic	30.0%
TAATCACTAGTGAAACTGTT+TGG	-	chr8.1:85718347-85718366	None:intergenic	30.0%
TATCTTATAATTAGGACCAG+AGG	-	chr8.1:85718639-85718658	None:intergenic	30.0%
TGATATACTTCAAACATGGT+TGG	-	chr8.1:85719773-85719792	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	85717402	85719913	85717402	ID=MS.gene022751
chr8.1	mRNA	85717402	85719913	85717402	ID=MS.gene022751.t1;Parent=MS.gene022751
chr8.1	exon	85717402	85717986	85717402	ID=MS.gene022751.t1.exon1;Parent=MS.gene022751.t1
chr8.1	CDS	85717402	85717986	85717402	ID=cds.MS.gene022751.t1;Parent=MS.gene022751.t1
chr8.1	exon	85718909	85719913	85718909	ID=MS.gene022751.t1.exon2;Parent=MS.gene022751.t1
chr8.1	CDS	85718909	85719913	85718909	ID=cds.MS.gene022751.t1;Parent=MS.gene022751.t1

Gene Sequence

>MS.gene022751

ATGGGACTCAAGGGTCAGTTTCCTCGGGGCATTGTTAATTGTTCGAGCATGACAGGATTAGATCTTTCAGTCAACGATCTATCTGGAACTATTCCAGGAGATATATCGACGCTTCTAAAATTTGTGACGTCTCTTGATCTATCTTCAAATGAATTTTCTGGAGAGATACCTGTTAGTCTTGCAAATTGTACTTATCTGAATATCCTTAAACTTAGTCAGAACCGACTCACCGGTCAAATTCCTCTACTATTAGGCACTCTCGATCGTATTAAGACATTCGATGTATCCAACAATCTTTTGACCGGGCCAGTTCCAAACTTCACTGCTAATAAAACTGAAGTAAATTATGCAAATAATCAAGGTCTTTGTGGTACATCTTCATTGGGGCTTTGCAAGGGCACGGCTTCGTCCAAGAGTAACACCGCAGTCATAGCTGGAGCTGCTGTTGGTGCAGTGACTCTTGCAGCGTTAGGATTGGGCGTTTTTATGTTCTTCTTTGTGCGTCGCAGTGCTTATAGGAAGAAGGAAGAAGATCCTGAAGGAAACAAATGGGCAAGAAGTCTTAAAGGAACTAAAGGAATTAAGGTAAGTTGTATATTGATGCATCATTGCACATGGCATATATGGTTACACCTAGAGAAGCTGTTCACTTATGTTATTAGATTTATTTGTCTTTTATAGAATTAGATACTTGTTCTAAGCCTTGTTTGGATAACTACTTAATTAAGCGCTCATAGCATAAACACTTATCATATTAGTGCATATGTATAAACTATTCCTATGACAAAAGATAAAATTAAGTCAAACTATTTTTATATAAGCCCTGAGCTGTTTTCATAAGCTATTTTTGAAGAGCTTGTGGAAATAAGATGAAAAAAATTTGTGAACATGCCATAAGCTGTTTCCATAAACAACTCTAATAATAAACGTCTTAAACATCTCCCAAACAGTTTCACTAGTGATTATGTCAGTAGATAAGCTCGAATAAGTCAATCCAAACAAGCCCTAAAATATTTTCGATAGAATCTAGTTTACAACAACAAGAAGAACCAAGCCTTATCCCACTAAGTTGGGTTGGCTCAGTAGAATCTAGTTTATTGGCTTATTTTTTAATACTTTCAACTGTTAATAAATAGAGAAATGCTAGGAACATATATCCTTTTCATTGTTGCTTACATCAATTGCGAAAACTTTTCTGCATACTGCTGCATCGAAGACATGAAAATATTGATTCCCTCTGGTCCTAATTATAAGATAATGTTTGGAGAAAATTTTGGTTCCATTTTATAAGATAAAATTTCAACTATTAGAAATACAGAAAAGCAAACATCCTTAAAAAGAAAAATAGCAAACATTTTCTCTTCAAATATTAGAAATAAAGAATATACTTTTTGCAAAATTATTTTCTGTAACATTTACAGAGCTGTACTTTATATGATTTTGCATACTGTTGGACTCTGATGAGAATATTTTACTTAAAGTCTAACTGTACTGAAATGAACATCAGGTATCTCTATTTGAGAAATCAATTTCAAAAATGAGATTGAGCGATCTCATGAAGGCTACCAACAACTTCAGTAATATCAATATCATTGGTACAGGAAGAACAGGAACAGTTTACAAAGCCACCCTTGATGACGGCACGGCATTTATGGTGAAAAGATTGCAGGAATCTCAACACTCCGAGAAAGAGTTTATGTCTGAGATGGCAACACTAGGGACTGTCAAACATCGTAATCTGGTTCCACTTTTAGGTTTTTGTGTGGCCAAAAAGGAGAGGCTTTTGGTCTTTAAAAACATGCCGAATGGAATGCTCCATGATCAACTACATCCTGCTGCGGGTGAGTGCACACTTGACTGGCCTTCGAGACTCAAAATCGCAATTGGAGCAGCCAAAGGATTTGCATGGCTTCATCATAGCTGCAATCCTCGCATCATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTCGAGCCCAAAATATCTGATTTTGGCCTTGCCAGGCTGATGAACCCGCTCGATACGCATTTAAGTACTTTTGTAAACGGTGAATTTGGCGATTTTGGTTATGTTGCTCCTGAGTACACAAAAACTTTGGTTGCTACGCCAAAGGGCGATGTTTTTAGCTTCGGGACCGTGCTTCTCGAGTTGGTGACCGGTGAAAGACCTGCAAATGTGGCTAAAGCACCGGAAACTTTTAAAGGAAATCTCGTAGAATGGATTACGGAGCTTTCAAGCAACTCAAAACTCCACGATGCCATCGACGAGTCACTTCTCAACAAAGGTGATGATAATGAGCTTTTCCAATTTTTAAAGGTTGCATGCAACTGTGTTACAGAAGTTCCAAAGGAGAGGCCAACCATGTTTGAAGTATATCAGTTTTTAAGAGCTATTGGTGGTAAGTACAATTTCCAAACTGAAGATGAAATATTGGTACCTGAAGATATTATTGGTGATAATAACATGGTGGAACTTATTGTTGCTAGAGAAGGAAAATAA

Protein sequence

>MS.gene022751.t1

MGLKGQFPRGIVNCSSMTGLDLSVNDLSGTIPGDISTLLKFVTSLDLSSNEFSGEIPVSLANCTYLNILKLSQNRLTGQIPLLLGTLDRIKTFDVSNNLLTGPVPNFTANKTEVNYANNQGLCGTSSLGLCKGTASSKSNTAVIAGAAVGAVTLAALGLGVFMFFFVRRSAYRKKEEDPEGNKWARSLKGTKGIKVSLFEKSISKMRLSDLMKATNNFSNINIIGTGRTGTVYKATLDDGTAFMVKRLQESQHSEKEFMSEMATLGTVKHRNLVPLLGFCVAKKERLLVFKNMPNGMLHDQLHPAAGECTLDWPSRLKIAIGAAKGFAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPLDTHLSTFVNGEFGDFGYVAPEYTKTLVATPKGDVFSFGTVLLELVTGERPANVAKAPETFKGNLVEWITELSSNSKLHDAIDESLLNKGDDNELFQFLKVACNCVTEVPKERPTMFEVYQFLRAIGGKYNFQTEDEILVPEDIIGDNNMVELIVAREGK