Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30139.t1 | AES70281.2 | 61.7 | 363 | 94 | 4 | 403 | 735 | 2 | 349 | 2.40E-80 | 310.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30139.t1 | Q7XTT4 | 52.3 | 107 | 50 | 1 | 628 | 733 | 434 | 540 | 1.4e-25 | 119.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30139.t1 | G7J1Z7 | 61.7 | 363 | 94 | 4 | 403 | 735 | 2 | 349 | 1.7e-80 | 310.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene30139.t1 | TR | GNAT |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049541 | MS.gene30139 | 0.808517 | 2.98E-50 | -1.69E-46 |
MS.gene049853 | MS.gene30139 | 0.823857 | 1.11E-53 | -1.69E-46 |
MS.gene052447 | MS.gene30139 | 0.807855 | 4.12E-50 | -1.69E-46 |
MS.gene054174 | MS.gene30139 | 0.806482 | 8.05E-50 | -1.69E-46 |
MS.gene054175 | MS.gene30139 | 0.811612 | 6.42E-51 | -1.69E-46 |
MS.gene055017 | MS.gene30139 | 0.817703 | 2.87E-52 | -1.69E-46 |
MS.gene055058 | MS.gene30139 | 0.803229 | 3.85E-49 | -1.69E-46 |
MS.gene05531 | MS.gene30139 | 0.802784 | 4.76E-49 | -1.69E-46 |
MS.gene058515 | MS.gene30139 | 0.804229 | 2.39E-49 | -1.69E-46 |
MS.gene058580 | MS.gene30139 | 0.824639 | 7.24E-54 | -1.69E-46 |
MS.gene059276 | MS.gene30139 | 0.837332 | 5.53E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene39295 | MS.gene30139 | PPI |
MS.gene34516 | MS.gene30139 | PPI |
MS.gene024089 | MS.gene30139 | PPI |
MS.gene64679 | MS.gene30139 | PPI |
MS.gene30139 | MS.gene022751 | PPI |
MS.gene036674 | MS.gene30139 | PPI |
MS.gene30139 | MS.gene57987 | PPI |
MS.gene30139 | MS.gene010536 | PPI |
MS.gene30139 | MS.gene050316 | PPI |
MS.gene30139 | MS.gene58223 | PPI |
MS.gene30139 | MS.gene024088 | PPI |
MS.gene30139 | MS.gene007221 | PPI |
MS.gene30139 | MS.gene041376 | PPI |
MS.gene43653 | MS.gene30139 | PPI |
MS.gene30139 | MS.gene020216 | PPI |
MS.gene30139 | MS.gene02437 | PPI |
MS.gene30139 | MS.gene007219 | PPI |
MS.gene30139 | MS.gene033532 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30139.t1 | MTR_3g050860 | 64.850 | 367 | 76 | 5 | 403 | 735 | 2 | 349 | 2.46e-149 | 442 |
MS.gene30139.t1 | MTR_3g050860 | 60.172 | 349 | 116 | 6 | 1 | 339 | 1 | 336 | 8.08e-123 | 374 |
MS.gene30139.t1 | MTR_0439s0020 | 74.825 | 143 | 35 | 1 | 1 | 142 | 1 | 143 | 2.49e-66 | 217 |
MS.gene30139.t1 | MTR_0439s0020 | 59.155 | 142 | 56 | 2 | 404 | 544 | 3 | 143 | 1.55e-46 | 163 |
MS.gene30139.t1 | MTR_4g074930 | 74.038 | 104 | 27 | 0 | 624 | 727 | 311 | 414 | 1.37e-44 | 170 |
MS.gene30139.t1 | MTR_4g074930 | 62.195 | 82 | 30 | 1 | 258 | 339 | 329 | 409 | 1.53e-23 | 106 |
MS.gene30139.t1 | MTR_4g074930 | 79.592 | 49 | 9 | 1 | 214 | 262 | 11 | 58 | 6.30e-12 | 69.7 |
MS.gene30139.t1 | MTR_4g074930 | 74.038 | 104 | 27 | 0 | 624 | 727 | 323 | 426 | 1.58e-44 | 170 |
MS.gene30139.t1 | MTR_4g074930 | 62.195 | 82 | 30 | 1 | 258 | 339 | 341 | 421 | 1.74e-23 | 106 |
MS.gene30139.t1 | MTR_4g074930 | 79.592 | 49 | 9 | 1 | 214 | 262 | 11 | 58 | 6.47e-12 | 69.7 |
MS.gene30139.t1 | MTR_4g074930 | 74.038 | 104 | 27 | 0 | 624 | 727 | 346 | 449 | 1.59e-44 | 171 |
MS.gene30139.t1 | MTR_4g074930 | 62.195 | 82 | 30 | 1 | 258 | 339 | 364 | 444 | 1.48e-23 | 106 |
MS.gene30139.t1 | MTR_4g074930 | 79.592 | 49 | 9 | 1 | 214 | 262 | 11 | 58 | 6.62e-12 | 69.7 |
MS.gene30139.t1 | MTR_4g074930 | 74.038 | 104 | 27 | 0 | 624 | 727 | 358 | 461 | 1.77e-44 | 171 |
MS.gene30139.t1 | MTR_4g074930 | 62.195 | 82 | 30 | 1 | 258 | 339 | 376 | 456 | 1.61e-23 | 106 |
MS.gene30139.t1 | MTR_4g074930 | 79.592 | 49 | 9 | 1 | 214 | 262 | 11 | 58 | 6.44e-12 | 69.7 |
MS.gene30139.t1 | MTR_1g036430 | 48.515 | 101 | 51 | 1 | 626 | 725 | 276 | 376 | 1.53e-23 | 106 |
MS.gene30139.t1 | MTR_1g036430 | 46.000 | 100 | 53 | 1 | 631 | 729 | 150 | 249 | 3.24e-22 | 102 |
MS.gene30139.t1 | MTR_1g036430 | 33.939 | 165 | 92 | 5 | 189 | 348 | 95 | 247 | 2.55e-14 | 77.4 |
MS.gene30139.t1 | MTR_1g036430 | 42.857 | 84 | 45 | 1 | 251 | 331 | 286 | 369 | 5.91e-13 | 73.2 |
MS.gene30139.t1 | MTR_3g034200 | 36.975 | 119 | 69 | 5 | 440 | 555 | 42 | 157 | 2.43e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30139.t1 | AT3G18610 | 51.887 | 106 | 48 | 2 | 622 | 727 | 305 | 407 | 2.90e-26 | 114 |
MS.gene30139.t1 | AT3G18610 | 47.917 | 96 | 44 | 2 | 258 | 353 | 324 | 413 | 7.40e-17 | 85.5 |
MS.gene30139.t1 | AT3G18610 | 51.887 | 106 | 48 | 2 | 622 | 727 | 335 | 437 | 3.23e-26 | 115 |
MS.gene30139.t1 | AT3G18610 | 47.917 | 96 | 44 | 2 | 258 | 353 | 354 | 443 | 7.90e-17 | 85.5 |
MS.gene30139.t1 | AT3G18610 | 51.887 | 106 | 48 | 2 | 622 | 727 | 365 | 467 | 3.38e-26 | 115 |
MS.gene30139.t1 | AT3G18610 | 47.917 | 96 | 44 | 2 | 258 | 353 | 384 | 473 | 7.72e-17 | 85.5 |
MS.gene30139.t1 | AT1G48920 | 41.667 | 120 | 62 | 3 | 622 | 734 | 278 | 396 | 9.56e-24 | 107 |
MS.gene30139.t1 | AT1G48920 | 41.284 | 109 | 56 | 4 | 253 | 354 | 292 | 399 | 5.22e-14 | 76.3 |
MS.gene30139.t1 | AT5G41690 | 42.222 | 90 | 51 | 1 | 251 | 340 | 429 | 517 | 5.27e-12 | 69.7 |
MS.gene30139.t1 | AT5G41690 | 44.048 | 84 | 47 | 0 | 252 | 335 | 62 | 145 | 2.63e-11 | 67.4 |
MS.gene30139.t1 | AT5G41690 | 43.023 | 86 | 48 | 1 | 257 | 342 | 184 | 268 | 6.41e-11 | 66.2 |
MS.gene30139.t1 | AT5G41690 | 42.222 | 90 | 51 | 1 | 251 | 340 | 429 | 517 | 5.27e-12 | 69.7 |
MS.gene30139.t1 | AT5G41690 | 44.048 | 84 | 47 | 0 | 252 | 335 | 62 | 145 | 2.63e-11 | 67.4 |
MS.gene30139.t1 | AT5G41690 | 43.023 | 86 | 48 | 1 | 257 | 342 | 184 | 268 | 6.41e-11 | 66.2 |
MS.gene30139.t1 | AT5G41690 | 42.222 | 90 | 51 | 1 | 251 | 340 | 429 | 517 | 5.27e-12 | 69.7 |
MS.gene30139.t1 | AT5G41690 | 44.048 | 84 | 47 | 0 | 252 | 335 | 62 | 145 | 2.63e-11 | 67.4 |
MS.gene30139.t1 | AT5G41690 | 43.023 | 86 | 48 | 1 | 257 | 342 | 184 | 268 | 6.41e-11 | 66.2 |
MS.gene30139.t1 | AT1G45100 | 46.053 | 76 | 41 | 0 | 642 | 717 | 247 | 322 | 4.59e-11 | 66.6 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATCTTGCATAACGAATTT+TGG | 0.090281 | 3.3:-42431755 | None:intergenic |
CATAAGGATGGAAAGCTTAA+AGG | 0.173752 | 3.3:+42434687 | MS.gene30139:CDS |
GAAGCTGTTTCTTCTAAAAT+AGG | 0.182499 | 3.3:+42431390 | MS.gene30139:CDS |
GAAGCTGTTCCTTCTAAAAT+AGG | 0.185699 | 3.3:+42428586 | MS.gene30139:CDS |
TAAAGATCGTCTTTCTTTAC+AGG | 0.196172 | 3.3:-42433923 | None:intergenic |
AGTAATTACCTGTTATTATT+AGG | 0.205492 | 3.3:-42434936 | None:intergenic |
GAAGAAACAGCTTCTGCTTC+AGG | 0.224450 | 3.3:-42431381 | None:intergenic |
TTACTTCATGGACTGTTTAC+AGG | 0.256586 | 3.3:+42435085 | MS.gene30139:CDS |
GGCTGAAATGGACTTGAAAA+AGG | 0.276827 | 3.3:+42427786 | MS.gene30139:CDS |
AGCTGAAGGTATTACATCTT+AGG | 0.282955 | 3.3:+42428414 | MS.gene30139:CDS |
AATGCGTCAGTGTTGGTCTT+TGG | 0.291887 | 3.3:-42427959 | None:intergenic |
GAGGAAATGGACGCCACTTC+CGG | 0.301752 | 3.3:-42430527 | None:intergenic |
TTTGTGGCTCTTTGCTGCTT+TGG | 0.316653 | 3.3:-42436442 | None:intergenic |
GAACTATCAGCTTTCTTTGC+GGG | 0.319653 | 3.3:-42428616 | None:intergenic |
AATACAACATTAGAAGAAAC+AGG | 0.329306 | 3.3:-42435055 | None:intergenic |
TCATCTTCTGAAGAATCTTC+TGG | 0.335928 | 3.3:+42433950 | MS.gene30139:CDS |
TGTTGACCTATATAAGATTC+TGG | 0.336459 | 3.3:+42427555 | MS.gene30139:CDS |
ACTCCTTCTCTCCGAAAGAT+AGG | 0.337370 | 3.3:-42432000 | None:intergenic |
ATGCGTCAGTGTTGGTCTTT+GGG | 0.337802 | 3.3:-42427958 | None:intergenic |
TGGTTGTGTTCCTTTGTGCC+TGG | 0.350291 | 3.3:-42436422 | None:intergenic |
TGACGTGGATCTTGAAAGTT+TGG | 0.353226 | 3.3:+42431852 | MS.gene30139:CDS |
GTTGTTTCTCCTGTGAAGTC+TGG | 0.362084 | 3.3:+42429179 | MS.gene30139:CDS |
TTCTACAACGATGGTGTCCC+CGG | 0.363342 | 3.3:+42427507 | None:intergenic |
ACTTGTGAACATGGCTGAAA+TGG | 0.363887 | 3.3:+42427774 | MS.gene30139:CDS |
TGTCCTGTTCTTCGAAAGAT+AGG | 0.365972 | 3.3:-42427742 | None:intergenic |
ATGTCGAGAGCTTACGCGTT+TGG | 0.366733 | 3.3:-42430333 | None:intergenic |
AAGCTGTTTCTTCTAAAATA+GGG | 0.371461 | 3.3:+42431391 | MS.gene30139:CDS |
ATGTCAAGAGCTTACGTATT+GGG | 0.379625 | 3.3:-42434745 | None:intergenic |
ATCCATCAGAGTTGGTCTTC+GGG | 0.381778 | 3.3:-42432310 | None:intergenic |
CGGTTTAGAAGATGCCCTTC+AGG | 0.382167 | 3.3:-42436521 | None:intergenic |
GGCCCTATCTTTCGAAGAAC+AGG | 0.389030 | 3.3:+42427739 | MS.gene30139:CDS |
ATTACTCTTCTTCGAAAAGA+TGG | 0.392800 | 3.3:+42427979 | MS.gene30139:CDS |
TCAGCTCATGAGGCTCGTTC+AGG | 0.393915 | 3.3:-42428397 | None:intergenic |
GATGGAAAGCTTAAAGGCTT+TGG | 0.397596 | 3.3:+42434693 | MS.gene30139:CDS |
CATATGCTCCTAATAATAAC+AGG | 0.399835 | 3.3:+42434928 | MS.gene30139:CDS |
CCTTCAGGCTCGACTCTTGT+AGG | 0.402549 | 3.3:-42436506 | None:intergenic |
TATTAGGCACTTAAGATGAA+TGG | 0.404097 | 3.3:+42434852 | MS.gene30139:intron |
TTTAAGAGTCTTGGAGAAGA+TGG | 0.404349 | 3.3:+42430564 | MS.gene30139:CDS |
CTTTGCAGACATTATATGTT+GGG | 0.404513 | 3.3:+42430091 | MS.gene30139:intron |
GAAGGAACAGCTTCTGCTGC+AGG | 0.405249 | 3.3:-42428577 | None:intergenic |
GCTGATGAGGGGTAACTTTG+TGG | 0.407304 | 3.3:-42436458 | None:intergenic |
ATTACTCTTCTTCGAAAAGA+TGG | 0.410597 | 3.3:+42432331 | MS.gene30139:CDS |
AGAGGATATCCACGAGGAAA+TGG | 0.410734 | 3.3:-42430540 | None:intergenic |
TGACGTGGATACTCAAAGTT+TGG | 0.414598 | 3.3:+42427594 | MS.gene30139:CDS |
GCGTTTCTTAAGACCACATC+CGG | 0.415976 | 3.3:-42431784 | None:intergenic |
AAGCTGTTCCTTCTAAAATA+GGG | 0.417254 | 3.3:+42428587 | MS.gene30139:CDS |
TCTTCGTTAACCCTATCTTT+CGG | 0.418866 | 3.3:+42431989 | MS.gene30139:CDS |
AGGAAATGGACGCCACTTCC+GGG | 0.427311 | 3.3:-42430526 | None:intergenic |
AATCCATCAGAGTTGGTCTT+CGG | 0.430864 | 3.3:-42432311 | None:intergenic |
TGTACGTCTTGCTTCTCATA+AGG | 0.432229 | 3.3:+42434671 | MS.gene30139:CDS |
GTGGTCCAGGTAGGCTGATG+AGG | 0.433856 | 3.3:-42436471 | None:intergenic |
GTGAAGAGCAATTATATTGA+TGG | 0.434863 | 3.3:+42432371 | MS.gene30139:CDS |
GGGAGACGCTTAAGGAGATA+TGG | 0.435407 | 3.3:+42436397 | MS.gene30139:CDS |
AACGATGGTGTCCCCGGGTG+TGG | 0.437378 | 3.3:+42427513 | None:intergenic |
AGAATCTTATATAGGTCAAC+AGG | 0.439517 | 3.3:-42427553 | None:intergenic |
GTGACGAGCAATAATATTGA+TGG | 0.440918 | 3.3:+42428019 | MS.gene30139:CDS |
ATTGCAGAGGGAGACGCTTA+AGG | 0.445079 | 3.3:+42436389 | MS.gene30139:intron |
TGAAAAGGACTTAAGGGATA+AGG | 0.447385 | 3.3:+42432047 | MS.gene30139:CDS |
TTAAGAGTCTTGGAGAAGAT+GGG | 0.449973 | 3.3:+42430565 | MS.gene30139:CDS |
AAGAAACAGCTTCTGCTTCA+GGG | 0.451779 | 3.3:-42431380 | None:intergenic |
AAATATATATACCTTGGTAT+AGG | 0.452925 | 3.3:-42435131 | None:intergenic |
CATATCACTTCCCTCTTCGT+TGG | 0.453367 | 3.3:+42427718 | MS.gene30139:CDS |
AAGCGCTGAAAAGGACTTAA+GGG | 0.454905 | 3.3:+42432041 | MS.gene30139:CDS |
GACTTGATTTAGCTCGGGAG+AGG | 0.463792 | 3.3:+42434901 | MS.gene30139:CDS |
TTACCCCTCATCAGCCTACC+TGG | 0.464293 | 3.3:+42436466 | MS.gene30139:CDS |
ACTTGTGGAAAGCGCTGAAA+AGG | 0.467490 | 3.3:+42432032 | MS.gene30139:CDS |
AAAGCGCTGAAAAGGACTTA+AGG | 0.468986 | 3.3:+42432040 | MS.gene30139:CDS |
GAACTGAAGCGTACTGGTTA+CGG | 0.472216 | 3.3:+42427694 | MS.gene30139:CDS |
AAAGATAGGGTTAACGAAGA+TGG | 0.472513 | 3.3:-42431986 | None:intergenic |
ATTAGGCACTTAAGATGAAT+GGG | 0.473468 | 3.3:+42434853 | MS.gene30139:intron |
TATGTTGGGAACTTATCCTT+CGG | 0.474371 | 3.3:+42434518 | MS.gene30139:CDS |
GGTTACCTTGTCTTTGATGT+TGG | 0.476676 | 3.3:+42427670 | MS.gene30139:CDS |
TAGGCACTTAAGATGATGAA+TGG | 0.477189 | 3.3:+42430465 | MS.gene30139:intron |
TCAGAGTTGGTCTTCGGGAC+GGG | 0.477721 | 3.3:-42432305 | None:intergenic |
TCTAATACCTCATCTTCATC+AGG | 0.477800 | 3.3:-42428443 | None:intergenic |
CGCTACTCGACTTGTGAACA+TGG | 0.478182 | 3.3:+42427765 | MS.gene30139:CDS |
GATCTTGAAAGTTTGGAGAA+TGG | 0.482941 | 3.3:+42431859 | MS.gene30139:CDS |
TGGTCCAGGTAGGCTGATGA+GGG | 0.483103 | 3.3:-42436470 | None:intergenic |
TGAGGTTGCTGCCAAACAAA+AGG | 0.484062 | 3.3:+42433702 | MS.gene30139:CDS |
TTACTCTTCTTCGAAAAGAT+GGG | 0.485859 | 3.3:+42432332 | MS.gene30139:CDS |
GATCGTAGTTGTGGTGGTCC+AGG | 0.489656 | 3.3:-42436484 | None:intergenic |
GTTGATGTATGTCTTGGTAC+TGG | 0.494029 | 3.3:+42430254 | MS.gene30139:CDS |
TTACTCTTCTTCGAAAAGAT+GGG | 0.494195 | 3.3:+42427980 | MS.gene30139:CDS |
TGGACTGTTTACAGGCGTGC+AGG | 0.495759 | 3.3:+42435093 | MS.gene30139:CDS |
CTTCGAAAAGATGGGGTATG+AGG | 0.498568 | 3.3:+42427988 | MS.gene30139:CDS |
TGTCTTGGTACTGGAAAGAA+AGG | 0.498641 | 3.3:+42430263 | MS.gene30139:CDS |
GGAAAGAAAGGAAAGCTACT+AGG | 0.500198 | 3.3:+42430275 | MS.gene30139:CDS |
TCTTTGCAGACATTATATGT+TGG | 0.501837 | 3.3:+42430090 | MS.gene30139:intron |
CTGTCCGACTTGATTTAGCT+CGG | 0.502487 | 3.3:+42434895 | MS.gene30139:CDS |
AACCCTATCTTTCGGAGAGA+AGG | 0.502877 | 3.3:+42431997 | MS.gene30139:CDS |
GCAAGCTGAGGAAGAAGTAA+AGG | 0.504238 | 3.3:+42429723 | MS.gene30139:CDS |
GACTTGAAGAAGCCCGGAAG+TGG | 0.505502 | 3.3:+42430514 | MS.gene30139:CDS |
AGGCACTTAAGATGATGAAT+GGG | 0.508935 | 3.3:+42430466 | MS.gene30139:intron |
AGTTTCTTCAAAGAAGCAAA+AGG | 0.509361 | 3.3:+42433675 | MS.gene30139:CDS |
CATTCACCAGAATCTTATAT+AGG | 0.510974 | 3.3:-42427561 | None:intergenic |
GCTTAAGGAGATATGGATCC+AGG | 0.511527 | 3.3:+42436404 | MS.gene30139:CDS |
ACTTGATTTAGCTCGGGAGA+GGG | 0.513360 | 3.3:+42434902 | MS.gene30139:CDS |
GTGTGAAGACATTATATGTT+GGG | 0.513802 | 3.3:+42434504 | MS.gene30139:CDS |
TGACCACAACCATTACTCTT+CGG | 0.514416 | 3.3:-42431955 | None:intergenic |
CGTGTGAAGACATTATATGT+TGG | 0.515977 | 3.3:+42434503 | MS.gene30139:CDS |
TATATACCTTGGTATAGGCC+TGG | 0.518085 | 3.3:-42435126 | None:intergenic |
GCGTCTCTTACGACCACACC+CGG | 0.518110 | 3.3:-42427526 | None:intergenic |
CGACATATTTAAGATTCTCG+TGG | 0.520223 | 3.3:+42431816 | MS.gene30139:CDS |
AGTGATTTCAAAGAAACAAA+AGG | 0.520492 | 3.3:+42429747 | MS.gene30139:CDS |
TTCACAGGAGAAACAACAAC+AGG | 0.521749 | 3.3:-42429173 | None:intergenic |
AGAACTATCAGCTTTCTTTG+CGG | 0.523567 | 3.3:-42428617 | None:intergenic |
TGAGGTTGCTGCTAAACAAA+AGG | 0.528001 | 3.3:+42429777 | MS.gene30139:CDS |
GCTGAAGGTATTACATCTTA+GGG | 0.529654 | 3.3:+42428415 | MS.gene30139:CDS |
TGTCCGACTTGATTTAGCTC+GGG | 0.530721 | 3.3:+42434896 | MS.gene30139:CDS |
GTCAGATTCTTTCACACTGA+AGG | 0.532155 | 3.3:-42430121 | None:intergenic |
CGTCTTGCTTCTCATAAGGA+TGG | 0.533795 | 3.3:+42434675 | MS.gene30139:CDS |
GATACTCAAAGTTTGGTGAA+TGG | 0.534335 | 3.3:+42427601 | MS.gene30139:CDS |
GATGGGGTATGAGGAGGAGG+CGG | 0.535830 | 3.3:+42427997 | MS.gene30139:CDS |
CCTGTGAAGTCTGGAATGAA+TGG | 0.537658 | 3.3:+42429188 | MS.gene30139:CDS |
GTCCCGAAGACCAACTCTGA+TGG | 0.538106 | 3.3:+42432308 | MS.gene30139:CDS |
GTAAAATTCTTCCAACATTG+TGG | 0.547157 | 3.3:+42430224 | MS.gene30139:CDS |
TAAGAGTCTTGGAGAAGATG+GGG | 0.547456 | 3.3:+42430566 | MS.gene30139:CDS |
CAACAACCTCTCCACAATGT+TGG | 0.547588 | 3.3:-42430235 | None:intergenic |
TGAAGAGCAATTATATTGAT+GGG | 0.547887 | 3.3:+42432372 | MS.gene30139:CDS |
GAGCAATTATATTGATGGGA+AGG | 0.549182 | 3.3:+42432376 | MS.gene30139:CDS |
GAGGTTGTTGATGTATGTCT+TGG | 0.550921 | 3.3:+42430248 | MS.gene30139:CDS |
AGGAGTCGCTTCTAAACTTG+TGG | 0.551270 | 3.3:+42432017 | MS.gene30139:CDS |
ATCAGAGTTGGTCTTCGGGA+CGG | 0.551912 | 3.3:-42432306 | None:intergenic |
AAAGATGGGGTATGAGGAGG+AGG | 0.552057 | 3.3:+42427994 | MS.gene30139:CDS |
CCATTCATTCCAGACTTCAC+AGG | 0.552142 | 3.3:-42429188 | None:intergenic |
CGTGCAGGATTCTATAAACC+AGG | 0.552805 | 3.3:+42435108 | MS.gene30139:CDS |
CTCCTTCTCTCCGAAAGATA+GGG | 0.554373 | 3.3:-42431999 | None:intergenic |
AAGATATGTGTCCCCGGATG+TGG | 0.555259 | 3.3:+42431771 | MS.gene30139:CDS |
AAACTTTGAGTATCCACGTC+AGG | 0.555864 | 3.3:-42427592 | None:intergenic |
TCCTGTGAAGTCTGGAGCGG+AGG | 0.556366 | 3.3:+42431726 | MS.gene30139:intron |
CGTTTCTTAAGACCACATCC+GGG | 0.561543 | 3.3:-42431783 | None:intergenic |
CTACAAGAGTCGAGCCTGAA+GGG | 0.564320 | 3.3:+42436507 | MS.gene30139:CDS |
GATCGCCAAGACGCTATCCT+CGG | 0.566309 | 3.3:+42431907 | MS.gene30139:CDS |
TCTACAACGATGGTGTCCCC+GGG | 0.568555 | 3.3:+42427508 | None:intergenic |
GCAAGCTGTGGAAGAAGTCG+AGG | 0.568949 | 3.3:+42433651 | MS.gene30139:CDS |
CTCTTGTAGGATCGTAGTTG+TGG | 0.569022 | 3.3:-42436493 | None:intergenic |
GTTGCAGCAGATGATCTCCT+AGG | 0.569948 | 3.3:+42427637 | MS.gene30139:CDS |
AAACTTTCAAGATCCACGTC+AGG | 0.572396 | 3.3:-42431850 | None:intergenic |
ATCATGACGAAGAAGTTCGA+GGG | 0.572521 | 3.3:+42432413 | MS.gene30139:CDS |
GAAACAAAAGGTAGATGATG+AGG | 0.577007 | 3.3:+42429759 | MS.gene30139:CDS |
CGAAAAGATGGGGTATGAGA+AGG | 0.577206 | 3.3:+42432343 | MS.gene30139:CDS |
CTTGATTTAGCTCGGGAGAG+GGG | 0.578698 | 3.3:+42434903 | MS.gene30139:CDS |
GTTGGTGAACTGAAGCGTAC+TGG | 0.578758 | 3.3:+42427688 | MS.gene30139:CDS |
ATCATGACGAAGAAGCTCAA+GGG | 0.579195 | 3.3:+42428061 | MS.gene30139:CDS |
TGTAATACCTTCAGCTCATG+AGG | 0.580082 | 3.3:-42428407 | None:intergenic |
GAAGAGTAATCCATCAGAGT+TGG | 0.583113 | 3.3:-42432318 | None:intergenic |
AAAGATAGGGCCAACGAAGA+GGG | 0.584375 | 3.3:-42427728 | None:intergenic |
GAAGAGTAATGCGTCAGTGT+TGG | 0.587807 | 3.3:-42427966 | None:intergenic |
GAACGAGCCTCATGAGCTGA+AGG | 0.587978 | 3.3:+42428400 | MS.gene30139:CDS |
CATCATGACGAAGAAGCTCA+AGG | 0.590035 | 3.3:+42428060 | MS.gene30139:CDS |
TACTCTTCTTCGAAAAGATG+GGG | 0.590062 | 3.3:+42427981 | MS.gene30139:CDS |
TACTCTTCTTCGAAAAGATG+GGG | 0.590062 | 3.3:+42432333 | MS.gene30139:CDS |
TTCTCCTGTGAAGTCTGGAG+CGG | 0.591347 | 3.3:+42431723 | MS.gene30139:intron |
GTGTCCGACTTGAAGAAGCC+CGG | 0.591409 | 3.3:+42430508 | MS.gene30139:CDS |
CATCATGACGAAGAAGTTCG+AGG | 0.591689 | 3.3:+42432412 | MS.gene30139:CDS |
TGACGAGCAATAATATTGAT+GGG | 0.592000 | 3.3:+42428020 | MS.gene30139:CDS |
CGTAACCGAGGATAGCGTCT+TGG | 0.592411 | 3.3:-42431912 | None:intergenic |
TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 3.3:+42430307 | MS.gene30139:CDS |
TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 3.3:+42434719 | MS.gene30139:CDS |
GAAAGATAGGGCCAACGAAG+AGG | 0.603202 | 3.3:-42427729 | None:intergenic |
AAAGAAGCAAAAGGTAGATG+AGG | 0.604240 | 3.3:+42433684 | MS.gene30139:CDS |
ATTCTTCCAACATTGTGGAG+AGG | 0.604800 | 3.3:+42430229 | MS.gene30139:CDS |
CCTACAAGAGTCGAGCCTGA+AGG | 0.608410 | 3.3:+42436506 | MS.gene30139:CDS |
ATGCATTATGCGGAGACCGA+AGG | 0.609027 | 3.3:+42432443 | MS.gene30139:CDS |
TTATGCAAGATATGTGTCCC+CGG | 0.610053 | 3.3:+42431765 | MS.gene30139:CDS |
GAACCGAAGAGTAATGGTTG+TGG | 0.611924 | 3.3:+42431952 | MS.gene30139:CDS |
GGATTATCTCTTACCTGACG+TGG | 0.613896 | 3.3:+42431837 | MS.gene30139:CDS |
TTGACCTTGATATAGGCAAG+AGG | 0.619505 | 3.3:+42429701 | MS.gene30139:intron |
TTGACTTTGATATAGGCAAG+AGG | 0.619505 | 3.3:+42433629 | MS.gene30139:intron |
TTGTAGGATCGTAGTTGTGG+TGG | 0.622589 | 3.3:-42436490 | None:intergenic |
GTCCTGTTCTTCGAAAGATA+GGG | 0.623256 | 3.3:-42427741 | None:intergenic |
GGTAACCGAGGATAATGCCT+AGG | 0.623647 | 3.3:-42427654 | None:intergenic |
ACTTCCGGGCTTCTTCAAGT+CGG | 0.625715 | 3.3:-42430512 | None:intergenic |
GGAATCTTCTGATGAAGATG+AGG | 0.626607 | 3.3:+42431461 | MS.gene30139:CDS |
GTCGTTGAACCGAAGAGTAA+TGG | 0.627136 | 3.3:+42431946 | MS.gene30139:CDS |
CGAAAAGATGGGGTATGAGG+AGG | 0.630413 | 3.3:+42427991 | MS.gene30139:CDS |
CGTCTCTTACGACCACACCC+GGG | 0.631420 | 3.3:-42427525 | None:intergenic |
TCATGACGAAGAAGCTCAAG+GGG | 0.631475 | 3.3:+42428062 | MS.gene30139:CDS |
AAAGATGGGGTATGAGAAGG+AGG | 0.631960 | 3.3:+42432346 | MS.gene30139:CDS |
GTAGTTGTGGTGGTCCAGGT+AGG | 0.637174 | 3.3:-42436480 | None:intergenic |
GGTCTGTCCTGATGAAGATG+AGG | 0.638915 | 3.3:+42428436 | MS.gene30139:CDS |
AGATATGGATCCAGGCACAA+AGG | 0.639525 | 3.3:+42436412 | MS.gene30139:CDS |
AAGTGGCGTCCATTTCCTCG+TGG | 0.648784 | 3.3:+42430531 | MS.gene30139:CDS |
GATCTCCTAGGCATTATCCT+CGG | 0.649171 | 3.3:+42427649 | MS.gene30139:CDS |
TATAGGCAAGAGGCAAGCTG+TGG | 0.650683 | 3.3:+42433639 | MS.gene30139:intron |
GTCTCTTACGACCACACCCG+GGG | 0.653034 | 3.3:-42427524 | None:intergenic |
TGAATCTTCTGATGAAGATG+AGG | 0.655782 | 3.3:+42433973 | MS.gene30139:CDS |
GGGGAAGCAGATGCATTATG+CGG | 0.657065 | 3.3:+42432433 | MS.gene30139:CDS |
CAAGGGGAAGCAGATGCATG+CGG | 0.658889 | 3.3:+42428078 | MS.gene30139:CDS |
CATCAAAGACAAGGTAACCG+AGG | 0.661196 | 3.3:-42427666 | None:intergenic |
GGTCCAGGTAGGCTGATGAG+GGG | 0.671239 | 3.3:-42436469 | None:intergenic |
GAGTGCACCTGAAAAGAAAG+CGG | 0.672655 | 3.3:+42431413 | MS.gene30139:CDS |
TGAATCTTCTGATGACGATG+AGG | 0.673523 | 3.3:+42428654 | MS.gene30139:CDS |
CAGATGCATGCGGAGAACGA+AGG | 0.679641 | 3.3:+42428088 | MS.gene30139:CDS |
TCTCCCGAGCTAAATCAAGT+CGG | 0.679997 | 3.3:-42434899 | None:intergenic |
TATAGGCAAGAGGCAAGCTG+AGG | 0.681134 | 3.3:+42429711 | MS.gene30139:intron |
GTTCACCAACATCAAAGACA+AGG | 0.681557 | 3.3:-42427675 | None:intergenic |
TATAAACCAGGCCTATACCA+AGG | 0.685036 | 3.3:+42435120 | MS.gene30139:CDS |
GAATGATGTCTTTCCTGACG+TGG | 0.685326 | 3.3:+42427579 | MS.gene30139:CDS |
GTTTCTTAAGACCACATCCG+GGG | 0.688273 | 3.3:-42431782 | None:intergenic |
TCATGACGAAGAAGTTCGAG+GGG | 0.691102 | 3.3:+42432414 | MS.gene30139:CDS |
ATACAACATTAGAAGAAACA+GGG | 0.691600 | 3.3:-42435054 | None:intergenic |
CATCAAAGATGACGTAACCG+AGG | 0.714623 | 3.3:-42431924 | None:intergenic |
TAAGATTCTTCAAGTCATCG+CGG | 0.762237 | 3.3:+42431882 | MS.gene30139:CDS |
GGGCAACAACTGTTGCAACG+TGG | 0.783157 | 3.3:+42430486 | MS.gene30139:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 42427517 | 42436539 | 42427517 | ID=MS.gene30139 |
chr3.3 | mRNA | 42427517 | 42436539 | 42427517 | ID=MS.gene30139.t1;Parent=MS.gene30139 |
chr3.3 | exon | 42427517 | 42427807 | 42427517 | ID=MS.gene30139.t1.exon1;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42427517 | 42427807 | 42427517 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42427929 | 42428109 | 42427929 | ID=MS.gene30139.t1.exon2;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42427929 | 42428109 | 42427929 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42428390 | 42428457 | 42428390 | ID=MS.gene30139.t1.exon3;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42428390 | 42428457 | 42428390 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42428574 | 42428675 | 42428574 | ID=MS.gene30139.t1.exon4;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42428574 | 42428675 | 42428574 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42429161 | 42429209 | 42429161 | ID=MS.gene30139.t1.exon5;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42429161 | 42429209 | 42429161 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42429716 | 42429798 | 42429716 | ID=MS.gene30139.t1.exon6;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42429716 | 42429798 | 42429716 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42430099 | 42430145 | 42430099 | ID=MS.gene30139.t1.exon7;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42430099 | 42430145 | 42430099 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42430223 | 42430340 | 42430223 | ID=MS.gene30139.t1.exon8;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42430223 | 42430340 | 42430223 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42430468 | 42430587 | 42430468 | ID=MS.gene30139.t1.exon9;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42430468 | 42430587 | 42430468 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42431378 | 42431482 | 42431378 | ID=MS.gene30139.t1.exon10;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42431378 | 42431482 | 42431378 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42431736 | 42432068 | 42431736 | ID=MS.gene30139.t1.exon11;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42431736 | 42432068 | 42431736 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42432281 | 42432464 | 42432281 | ID=MS.gene30139.t1.exon12;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42432281 | 42432464 | 42432281 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42433644 | 42433732 | 42433644 | ID=MS.gene30139.t1.exon13;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42433644 | 42433732 | 42433644 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42433881 | 42433994 | 42433881 | ID=MS.gene30139.t1.exon14;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42433881 | 42433994 | 42433881 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42434470 | 42434558 | 42434470 | ID=MS.gene30139.t1.exon15;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42434470 | 42434558 | 42434470 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42434635 | 42434752 | 42434635 | ID=MS.gene30139.t1.exon16;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42434635 | 42434752 | 42434635 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42434858 | 42434949 | 42434858 | ID=MS.gene30139.t1.exon17;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42434858 | 42434949 | 42434858 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42435036 | 42435141 | 42435036 | ID=MS.gene30139.t1.exon18;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42435036 | 42435141 | 42435036 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
chr3.3 | exon | 42436396 | 42436539 | 42436396 | ID=MS.gene30139.t1.exon19;Parent=MS.gene30139.t1 |
chr3.3 | CDS | 42436396 | 42436539 | 42436396 | ID=cds.MS.gene30139.t1;Parent=MS.gene30139.t1 |
Gene Sequence |
Protein sequence |