Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82682.t1 | AES70281.2 | 69 | 371 | 96 | 4 | 440 | 810 | 2 | 353 | 1.30E-89 | 341.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82682.t1 | Q7XTT4 | 49.1 | 116 | 58 | 1 | 700 | 814 | 435 | 550 | 8.9e-26 | 120.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82682.t1 | G7J1Z7 | 69.0 | 371 | 96 | 4 | 440 | 810 | 2 | 353 | 9.6e-90 | 341.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene82682.t1 | TR | GNAT |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049262 | MS.gene82682 | 0.813929 | 2.00E-51 | -1.69E-46 |
MS.gene049853 | MS.gene82682 | 0.804641 | 1.96E-49 | -1.69E-46 |
MS.gene050611 | MS.gene82682 | 0.803587 | 3.25E-49 | -1.69E-46 |
MS.gene051575 | MS.gene82682 | 0.805268 | 1.45E-49 | -1.69E-46 |
MS.gene052447 | MS.gene82682 | 0.830046 | 3.66E-55 | -1.69E-46 |
MS.gene05329 | MS.gene82682 | 0.814124 | 1.81E-51 | -1.69E-46 |
MS.gene055017 | MS.gene82682 | 0.815486 | 9.02E-52 | -1.69E-46 |
MS.gene055056 | MS.gene82682 | 0.819301 | 1.25E-52 | -1.69E-46 |
MS.gene055058 | MS.gene82682 | 0.806139 | 9.51E-50 | -1.69E-46 |
MS.gene05531 | MS.gene82682 | 0.818103 | 2.33E-52 | -1.69E-46 |
MS.gene055952 | MS.gene82682 | 0.803127 | 4.04E-49 | -1.69E-46 |
MS.gene058515 | MS.gene82682 | 0.805747 | 1.15E-49 | -1.69E-46 |
MS.gene058580 | MS.gene82682 | 0.822959 | 1.79E-53 | -1.69E-46 |
MS.gene05925 | MS.gene82682 | 0.819487 | 1.13E-52 | -1.69E-46 |
MS.gene059276 | MS.gene82682 | 0.844598 | 6.85E-59 | -1.69E-46 |
MS.gene059460 | MS.gene82682 | 0.808111 | 3.64E-50 | -1.69E-46 |
MS.gene059584 | MS.gene82682 | 0.804886 | 1.74E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene82682 | MS.gene43653 | PPI |
MS.gene82682 | MS.gene022751 | PPI |
MS.gene82682 | MS.gene57987 | PPI |
MS.gene82682 | MS.gene050316 | PPI |
MS.gene82682 | MS.gene58223 | PPI |
MS.gene82682 | MS.gene024088 | PPI |
MS.gene82682 | MS.gene007221 | PPI |
MS.gene82682 | MS.gene041376 | PPI |
MS.gene82682 | MS.gene020216 | PPI |
MS.gene82682 | MS.gene64679 | PPI |
MS.gene82682 | MS.gene34516 | PPI |
MS.gene82682 | MS.gene010536 | PPI |
MS.gene82682 | MS.gene39295 | PPI |
MS.gene82682 | MS.gene024089 | PPI |
MS.gene82682 | MS.gene036674 | PPI |
MS.gene82682 | MS.gene02437 | PPI |
MS.gene82682 | MS.gene007219 | PPI |
MS.gene82682 | MS.gene033532 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82682.t1 | MTR_3g050860 | 75.472 | 371 | 72 | 4 | 440 | 810 | 2 | 353 | 3.48e-177 | 515 |
MS.gene82682.t1 | MTR_3g050860 | 57.064 | 361 | 126 | 4 | 1 | 357 | 1 | 336 | 4.17e-114 | 352 |
MS.gene82682.t1 | MTR_0439s0020 | 72.727 | 143 | 38 | 1 | 1 | 142 | 1 | 143 | 2.15e-64 | 213 |
MS.gene82682.t1 | MTR_0439s0020 | 59.859 | 142 | 55 | 2 | 441 | 581 | 3 | 143 | 2.07e-47 | 166 |
MS.gene82682.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 695 | 798 | 311 | 414 | 3.13e-45 | 172 |
MS.gene82682.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 330 | 443 | 2.17e-23 | 106 |
MS.gene82682.t1 | MTR_4g074930 | 80.000 | 50 | 10 | 0 | 215 | 264 | 11 | 60 | 1.40e-14 | 78.2 |
MS.gene82682.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 695 | 798 | 346 | 449 | 3.54e-45 | 173 |
MS.gene82682.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 365 | 478 | 2.21e-23 | 106 |
MS.gene82682.t1 | MTR_4g074930 | 80.000 | 50 | 10 | 0 | 215 | 264 | 11 | 60 | 1.50e-14 | 78.2 |
MS.gene82682.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 695 | 798 | 323 | 426 | 3.54e-45 | 172 |
MS.gene82682.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 342 | 455 | 2.23e-23 | 106 |
MS.gene82682.t1 | MTR_4g074930 | 80.000 | 50 | 10 | 0 | 215 | 264 | 11 | 60 | 1.38e-14 | 78.2 |
MS.gene82682.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 695 | 798 | 358 | 461 | 4.82e-45 | 172 |
MS.gene82682.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 377 | 490 | 2.77e-23 | 105 |
MS.gene82682.t1 | MTR_4g074930 | 80.000 | 50 | 10 | 0 | 215 | 264 | 11 | 60 | 1.61e-14 | 78.2 |
MS.gene82682.t1 | MTR_1g036430 | 35.526 | 228 | 114 | 7 | 598 | 795 | 20 | 244 | 1.30e-25 | 113 |
MS.gene82682.t1 | MTR_1g036430 | 43.902 | 123 | 65 | 2 | 692 | 810 | 271 | 393 | 2.00e-24 | 109 |
MS.gene82682.t1 | MTR_1g036430 | 38.776 | 98 | 57 | 1 | 278 | 375 | 163 | 257 | 2.79e-11 | 67.8 |
MS.gene82682.t1 | MTR_3g034200 | 37.815 | 119 | 68 | 5 | 477 | 592 | 42 | 157 | 1.33e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82682.t1 | AT3G18610 | 49.593 | 123 | 53 | 3 | 690 | 812 | 302 | 415 | 2.85e-27 | 118 |
MS.gene82682.t1 | AT3G18610 | 43.220 | 118 | 54 | 3 | 278 | 390 | 325 | 434 | 2.80e-16 | 83.6 |
MS.gene82682.t1 | AT3G18610 | 49.593 | 123 | 53 | 3 | 690 | 812 | 332 | 445 | 2.91e-27 | 118 |
MS.gene82682.t1 | AT3G18610 | 43.220 | 118 | 54 | 3 | 278 | 390 | 355 | 464 | 2.49e-16 | 84.0 |
MS.gene82682.t1 | AT3G18610 | 49.593 | 123 | 53 | 3 | 690 | 812 | 362 | 475 | 3.50e-27 | 118 |
MS.gene82682.t1 | AT3G18610 | 43.220 | 118 | 54 | 3 | 278 | 390 | 385 | 494 | 2.45e-16 | 84.0 |
MS.gene82682.t1 | AT1G48920 | 42.748 | 131 | 66 | 4 | 680 | 802 | 265 | 394 | 7.88e-25 | 110 |
MS.gene82682.t1 | AT1G48920 | 37.500 | 120 | 67 | 3 | 278 | 390 | 298 | 416 | 1.53e-13 | 74.7 |
Find 222 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTCTTGCATAACGAATTT+TGG | 0.055280 | 3.1:-37526298 | None:intergenic |
CATAAGGATGGAAAGCTTAA+AGG | 0.173752 | 3.1:+37529235 | MS.gene82682:CDS |
GAAGCTGTTTCTTCTAAAAT+AGG | 0.182499 | 3.1:+37525801 | MS.gene82682:CDS |
TGCGGGTGCACTTCCTATTT+TGG | 0.183725 | 3.1:-37528686 | None:intergenic |
GAAGCTGTTCCTTCTAAAAT+AGG | 0.185699 | 3.1:+37522241 | MS.gene82682:CDS |
TAAAGATCGTCTTTCTTTAC+AGG | 0.196172 | 3.1:-37528471 | None:intergenic |
GAAGTTGTTCCTTCCAAAAT+AGG | 0.222757 | 3.1:+37528673 | MS.gene82682:CDS |
GAAGAAACAGCTTCTGCTTC+AGG | 0.224450 | 3.1:-37525792 | None:intergenic |
AGTGATTACCTGTTATTATT+AGG | 0.230117 | 3.1:-37529485 | None:intergenic |
GGAGGCTTTGTCAGGGGTTT+TGG | 0.242686 | 3.1:+37524201 | MS.gene82682:CDS |
AGGTGAAGGTATTACATCTT+AGG | 0.254032 | 3.1:+37522070 | MS.gene82682:CDS |
CAGAAGATTCGTCAGATTCT+TGG | 0.263120 | 3.1:-37528729 | None:intergenic |
GAGGATATGGACGCCACTTC+CGG | 0.287885 | 3.1:-37524029 | None:intergenic |
AATGCGTCAGTGTTGGTCTT+TGG | 0.291887 | 3.1:-37521638 | None:intergenic |
AGAGGATATCCTTGAGGATA+TGG | 0.312044 | 3.1:-37524042 | None:intergenic |
GAACTATCAGCCTTCTTTGC+GGG | 0.314916 | 3.1:-37528703 | None:intergenic |
GAACTATCAGCTTTCTTTGC+GGG | 0.320443 | 3.1:-37522271 | None:intergenic |
ACTCCTTCTCTCCGATAGAT+AGG | 0.335350 | 3.1:-37526543 | None:intergenic |
TCATCTTCTGAAGAATCTTC+TGG | 0.335928 | 3.1:+37528498 | MS.gene82682:CDS |
TGTTGACCTATATAAGATTC+TGG | 0.336459 | 3.1:+37521185 | MS.gene82682:CDS |
TCTTCGTTGGCCCTATCTTT+CGG | 0.339060 | 3.1:+37521361 | MS.gene82682:CDS |
TATTAGGCATTTAAGATGAA+TGG | 0.347414 | 3.1:+37529401 | MS.gene82682:intron |
GTTGTTTCTCCTCTGAAGTC+TGG | 0.349924 | 3.1:+37522529 | MS.gene82682:CDS |
TGGTTGTGTTCCTTTGTGCC+TGG | 0.350291 | 3.1:-37530964 | None:intergenic |
TGACGTGGATCTTGAAAGTT+TGG | 0.353226 | 3.1:+37526395 | MS.gene82682:CDS |
TTCTACAACGATGGTGTCCC+CGG | 0.363342 | 3.1:+37521137 | None:intergenic |
ATGTCGAGAGCTTACGCGTT+TGG | 0.366733 | 3.1:-37523838 | None:intergenic |
ACTTGTGACCATGGCTGAAA+TGG | 0.368546 | 3.1:+37521404 | MS.gene82682:CDS |
CAAGAATCTGACGAATCTTC+TGG | 0.369595 | 3.1:+37528730 | MS.gene82682:CDS |
AAGCTGTTTCTTCTAAAATA+GGG | 0.371461 | 3.1:+37525802 | MS.gene82682:CDS |
GTGGCGGAGGAGGCTTTGTC+AGG | 0.376610 | 3.1:+37524193 | MS.gene82682:CDS |
TTTGTGGCTCTTTGCCGCTT+TGG | 0.376907 | 3.1:-37530984 | None:intergenic |
ATTACTCTTCTTCGAAAAGA+TGG | 0.379614 | 3.1:+37521658 | MS.gene82682:CDS |
ATCCATCAGAGTTGGTCTTC+GGG | 0.381778 | 3.1:-37526853 | None:intergenic |
ATGCGTCAGTGTTGGTCTTT+GGG | 0.387142 | 3.1:-37521637 | None:intergenic |
ATGTCAAGAGCGTACGTATT+GGG | 0.387592 | 3.1:-37529293 | None:intergenic |
CATATACTCCTAATAATAAC+AGG | 0.390293 | 3.1:+37529477 | MS.gene82682:CDS |
AACAGGCACTTGATAAGAAT+GGG | 0.392124 | 3.1:+37523968 | MS.gene82682:intron |
CAACAACCATTCCACAATCT+TGG | 0.392218 | 3.1:-37523740 | None:intergenic |
GATGGAAAGCTTAAAGGCTT+TGG | 0.397596 | 3.1:+37529241 | MS.gene82682:CDS |
TCACCTCATGAGGCTCGTTC+AGG | 0.399957 | 3.1:-37522053 | None:intergenic |
GAAGGAACAGCTTCTGCTGC+AGG | 0.405249 | 3.1:-37522232 | None:intergenic |
GCTGATGAGGGGTAACTTTG+TGG | 0.407304 | 3.1:-37531000 | None:intergenic |
ATTACTCTTCTTCGAAAAGA+TGG | 0.410597 | 3.1:+37526874 | MS.gene82682:CDS |
TGACGTGGATACTCAAAGTT+TGG | 0.414598 | 3.1:+37521224 | MS.gene82682:CDS |
GCGTTTCTTAAGACCACATC+CGG | 0.415976 | 3.1:-37526327 | None:intergenic |
AAGCTGTTCCTTCTAAAATA+GGG | 0.417254 | 3.1:+37522242 | MS.gene82682:CDS |
GTGAAGAGCAATAGTATTGA+TGG | 0.420089 | 3.1:+37521698 | MS.gene82682:CDS |
ATTAGGCATTTAAGATGAAT+GGG | 0.421258 | 3.1:+37529402 | MS.gene82682:intron |
GGCCCTATCTTTCGGAGAAA+AGG | 0.422484 | 3.1:+37521369 | MS.gene82682:CDS |
GGGAGACACTGAAGGAGATA+TGG | 0.426445 | 3.1:+37530939 | MS.gene82682:CDS |
AGGATATGGACGCCACTTCC+GGG | 0.429451 | 3.1:-37524028 | None:intergenic |
AATCCATCAGAGTTGGTCTT+CGG | 0.430864 | 3.1:-37526854 | None:intergenic |
TGTACGTCTTGCTTCTCATA+AGG | 0.432229 | 3.1:+37529219 | MS.gene82682:CDS |
GTGGTCCAGGTAGGCTGATG+AGG | 0.433856 | 3.1:-37531013 | None:intergenic |
GTGAAGAGCAATTATATTGA+TGG | 0.434863 | 3.1:+37526914 | MS.gene82682:CDS |
AGAATCTTATATAGGTCAAC+AGG | 0.439517 | 3.1:-37521183 | None:intergenic |
GGCTGAAATGGACTTGGAAA+AGG | 0.444198 | 3.1:+37521416 | MS.gene82682:CDS |
TGAAAAGGACTTAAGGGATA+AGG | 0.447385 | 3.1:+37526590 | MS.gene82682:CDS |
AACGATGGTGTCCCCGGGTG+AGG | 0.449277 | 3.1:+37521143 | None:intergenic |
TTGCAAAGAATTTGTCCTCC+AGG | 0.449486 | 3.1:-37531063 | None:intergenic |
AGGAAAATATACCTTGGTAT+AGG | 0.450362 | 3.1:-37529680 | None:intergenic |
AAGAAACAGCTTCTGCTTCA+GGG | 0.451779 | 3.1:-37525791 | None:intergenic |
CATATCACTTCCCTCTTCGT+TGG | 0.453367 | 3.1:+37521348 | MS.gene82682:CDS |
GAAGGAACAACTTCTGCTGC+AGG | 0.453852 | 3.1:-37528664 | None:intergenic |
AAGCGCTGAAAAGGACTTAA+GGG | 0.454905 | 3.1:+37526584 | MS.gene82682:CDS |
CCTCCAGGCTCGACTCCTGT+AGG | 0.458207 | 3.1:-37531048 | None:intergenic |
TAACAGGCACTTGATAAGAA+TGG | 0.463075 | 3.1:+37523967 | MS.gene82682:intron |
TTACCCCTCATCAGCCTACC+TGG | 0.464293 | 3.1:+37531008 | MS.gene82682:CDS |
TGTTGGGAACTTATCATTCA+AGG | 0.465531 | 3.1:+37523613 | MS.gene82682:CDS |
ACTTGTGGAAAGCGCTGAAA+AGG | 0.467490 | 3.1:+37526575 | MS.gene82682:CDS |
AAAGCGCTGAAAAGGACTTA+AGG | 0.468986 | 3.1:+37526583 | MS.gene82682:CDS |
GGTCGCAGTTGTGGTGGTCC+AGG | 0.471624 | 3.1:-37531026 | None:intergenic |
CTTCGAAAAGATGGGTTATG+AGG | 0.474734 | 3.1:+37521667 | MS.gene82682:CDS |
TCAGCTGAAAGTGGCGGAGG+AGG | 0.475866 | 3.1:+37524183 | MS.gene82682:CDS |
CTTTCGAAGACAATATATGT+TGG | 0.475870 | 3.1:+37523596 | MS.gene82682:intron |
TAAGAGTAATGGAGAGGATG+AGG | 0.477121 | 3.1:+37524224 | MS.gene82682:CDS |
TTTCGAAGACAATATATGTT+GGG | 0.477167 | 3.1:+37523597 | MS.gene82682:intron |
TCAGAGTTGGTCTTCGGGAC+GGG | 0.477721 | 3.1:-37526848 | None:intergenic |
GATCTTGAAAGTTTGGAGAA+TGG | 0.482941 | 3.1:+37526402 | MS.gene82682:CDS |
TGGTCCAGGTAGGCTGATGA+GGG | 0.483103 | 3.1:-37531012 | None:intergenic |
TGCCAAACAAAAGGTATTGA+AGG | 0.484854 | 3.1:+37523408 | MS.gene82682:CDS |
TGCCAAACAAAAGGTATTGA+AGG | 0.484854 | 3.1:+37528259 | MS.gene82682:CDS |
TTACTCTTCTTCGAAAAGAT+GGG | 0.485859 | 3.1:+37526875 | MS.gene82682:CDS |
GACTTCAAGAAGCCCGGAAG+TGG | 0.490497 | 3.1:+37524016 | MS.gene82682:CDS |
GACCCTACAGGAGTCGAGCC+TGG | 0.491583 | 3.1:+37531045 | MS.gene82682:CDS |
TCCTGTGAAGTCTGGAACGG+AGG | 0.492616 | 3.1:+37526269 | MS.gene82682:intron |
GAACTGAAGCGTACTAGTTA+CGG | 0.493616 | 3.1:+37521324 | MS.gene82682:CDS |
CTCCTGTAGGGTCGCAGTTG+TGG | 0.493891 | 3.1:-37531035 | None:intergenic |
CGAGGTTGCTGCCAAACAAA+AGG | 0.496709 | 3.1:+37523399 | MS.gene82682:CDS |
ATGGTTGTTGATGTATGTCT+TGG | 0.496788 | 3.1:+37523753 | MS.gene82682:CDS |
CTGTCCGACTTGATTTAGCT+CGG | 0.499370 | 3.1:+37529444 | MS.gene82682:CDS |
AGGAAGTGCACCCGCAAAGA+AGG | 0.501050 | 3.1:+37528693 | MS.gene82682:CDS |
GGTGAAGGTATTACATCTTA+GGG | 0.501154 | 3.1:+37522071 | MS.gene82682:CDS |
TCGACTGTTTACAGGCGTAC+AGG | 0.505806 | 3.1:+37529642 | MS.gene82682:intron |
GTCAGTGTTGGTCTTTGGGA+TGG | 0.506964 | 3.1:-37521633 | None:intergenic |
TTACTCTTCTTCGAAAAGAT+GGG | 0.507362 | 3.1:+37521659 | MS.gene82682:CDS |
AGTTTCTTCAAAGAAGCAAA+AGG | 0.509361 | 3.1:+37528223 | MS.gene82682:CDS |
TTCCAAGTCCATTTCAGCCA+TGG | 0.509729 | 3.1:-37521412 | None:intergenic |
GACCATGGCTGAAATGGACT+TGG | 0.509783 | 3.1:+37521410 | MS.gene82682:CDS |
CTTGATTTAGCTCGGGAAAG+AGG | 0.509804 | 3.1:+37529452 | MS.gene82682:CDS |
GGTTACATCGTCTTTGATGT+TGG | 0.509911 | 3.1:+37521300 | MS.gene82682:CDS |
CATTCACCAGAATCTTATAT+AGG | 0.510974 | 3.1:-37521191 | None:intergenic |
GATCTCCTAGGCATTATCTT+CGG | 0.511416 | 3.1:+37521279 | MS.gene82682:CDS |
TTCAGAGGAGAAACAACAAC+AGG | 0.512080 | 3.1:-37522523 | None:intergenic |
GTGTGAAGACATTATATGTT+GGG | 0.513802 | 3.1:+37529052 | MS.gene82682:CDS |
ACTGAAGGAGATATGGATCC+AGG | 0.514100 | 3.1:+37530946 | MS.gene82682:CDS |
TGACCACAACCATTACTCTT+CGG | 0.514416 | 3.1:-37526498 | None:intergenic |
TGAGGTTGCTGCCAAACAAA+AGG | 0.514624 | 3.1:+37528250 | MS.gene82682:CDS |
CGTGTGAAGACATTATATGT+TGG | 0.515977 | 3.1:+37529051 | MS.gene82682:CDS |
AATATACCTTGGTATAGGCC+TGG | 0.518085 | 3.1:-37529675 | None:intergenic |
CGACATATTTAAGATTCTCG+TGG | 0.520223 | 3.1:+37526359 | MS.gene82682:CDS |
AGAACTATCAGCCTTCTTTG+CGG | 0.521392 | 3.1:-37528704 | None:intergenic |
TGTCCGACTTGATTTAGCTC+GGG | 0.527859 | 3.1:+37529445 | MS.gene82682:CDS |
CTCCAGGCTCGACTCCTGTA+GGG | 0.528377 | 3.1:-37531047 | None:intergenic |
GCGTCTCTTACGACCTCACC+CGG | 0.529314 | 3.1:-37521156 | None:intergenic |
CACCACAACTGCGACCCTAC+AGG | 0.533066 | 3.1:+37531033 | MS.gene82682:CDS |
CGTCTTGCTTCTCATAAGGA+TGG | 0.533795 | 3.1:+37529223 | MS.gene82682:CDS |
GATACTCAAAGTTTGGTGAA+TGG | 0.534335 | 3.1:+37521231 | MS.gene82682:CDS |
AGTGACTTCAAAGAAGCAAA+AGG | 0.536343 | 3.1:+37523372 | MS.gene82682:CDS |
TCAGTGTTGGTCTTTGGGAT+GGG | 0.537407 | 3.1:-37521632 | None:intergenic |
GTCCCGAAGACCAACTCTGA+TGG | 0.538106 | 3.1:+37526851 | MS.gene82682:CDS |
TACCTCATCTTCATCAGCAC+AGG | 0.544308 | 3.1:-37522094 | None:intergenic |
CGCTACTCGACTTGTGACCA+TGG | 0.544412 | 3.1:+37521395 | MS.gene82682:CDS |
CTTTGATGAATCTGAGGACG+TGG | 0.545887 | 3.1:+37523456 | MS.gene82682:CDS |
GCAAGCTGAGGAAGAAGTCA+AGG | 0.547712 | 3.1:+37523348 | MS.gene82682:CDS |
TGAAGAGCAATTATATTGAT+GGG | 0.547887 | 3.1:+37526915 | MS.gene82682:CDS |
GAGCAATTATATTGATGGGA+AGG | 0.549182 | 3.1:+37526919 | MS.gene82682:CDS |
GCAGTTGTGGTGGTCCAGGT+AGG | 0.549338 | 3.1:-37531022 | None:intergenic |
TTCTCCTGTGAAGTCTGGAA+CGG | 0.549398 | 3.1:+37526266 | MS.gene82682:intron |
AGGAGTCGCTTCTAAACTTG+TGG | 0.551270 | 3.1:+37526560 | MS.gene82682:CDS |
ATCAGAGTTGGTCTTCGGGA+CGG | 0.551912 | 3.1:-37526849 | None:intergenic |
CGTACAGGATTCTATAAACC+AGG | 0.553066 | 3.1:+37529657 | MS.gene82682:CDS |
AAACTTTGAGTATCCACGTC+AGG | 0.555864 | 3.1:-37521222 | None:intergenic |
AACTCAGCTGAAAGTGGCGG+AGG | 0.557051 | 3.1:+37524180 | MS.gene82682:CDS |
AGAACTATCAGCTTTCTTTG+CGG | 0.559186 | 3.1:-37522272 | None:intergenic |
CGTTTCTTAAGACCACATCC+GGG | 0.561543 | 3.1:-37526326 | None:intergenic |
GGCGGAGGAGGCTTTGTCAG+GGG | 0.562222 | 3.1:+37524195 | MS.gene82682:CDS |
AAGAAATGTGTCCCCGGATG+TGG | 0.566003 | 3.1:+37526314 | MS.gene82682:CDS |
AACCCTATCTATCGGAGAGA+AGG | 0.566214 | 3.1:+37526540 | MS.gene82682:CDS |
GCAAGGTGCTGCTTACGTCT+CGG | 0.567387 | 3.1:+37521607 | MS.gene82682:intron |
GCAAGCTGTGGAAGAAGTCG+AGG | 0.568949 | 3.1:+37528199 | MS.gene82682:CDS |
TGGCGGAGGAGGCTTTGTCA+GGG | 0.569871 | 3.1:+37524194 | MS.gene82682:CDS |
AGATTCATCAAAGGATTCCT+CGG | 0.570696 | 3.1:-37523446 | None:intergenic |
AAACTTTCAAGATCCACGTC+AGG | 0.572396 | 3.1:-37526393 | None:intergenic |
ATCATGACGAAGAAGTTCGA+GGG | 0.572521 | 3.1:+37526956 | MS.gene82682:CDS |
CTCCTTCTCTCCGATAGATA+GGG | 0.574815 | 3.1:-37526542 | None:intergenic |
AAAGATGGGTTATGAGGAGG+AGG | 0.574952 | 3.1:+37521673 | MS.gene82682:CDS |
CGAAAAGATGGGGTATGAGA+AGG | 0.577206 | 3.1:+37526886 | MS.gene82682:CDS |
GATGGGTTATGAGGAGGAGG+CGG | 0.578268 | 3.1:+37521676 | MS.gene82682:CDS |
ACTTCCGGGCTTCTTGAAGT+CGG | 0.578288 | 3.1:-37524014 | None:intergenic |
TCTACAACGATGGTGTCCCC+GGG | 0.581400 | 3.1:+37521138 | None:intergenic |
GAAGAGTAATCCATCAGAGT+TGG | 0.583113 | 3.1:-37526861 | None:intergenic |
AAAGATAGGGCCAACGAAGA+GGG | 0.584375 | 3.1:-37521358 | None:intergenic |
TGTAATACCTTCACCTCATG+AGG | 0.584681 | 3.1:-37522063 | None:intergenic |
ATGCGTTCTGCGGAGACCGA+AGG | 0.587376 | 3.1:+37521770 | MS.gene82682:CDS |
GAAGAGTAATGCGTCAGTGT+TGG | 0.587807 | 3.1:-37521645 | None:intergenic |
TACTCTTCTTCGAAAAGATG+GGG | 0.590062 | 3.1:+37526876 | MS.gene82682:CDS |
CATCATGACGAAGAAGTTCG+AGG | 0.591689 | 3.1:+37526955 | MS.gene82682:CDS |
GTTGCAGCGGATGATCTCCT+AGG | 0.593344 | 3.1:+37521267 | MS.gene82682:CDS |
ATGTCCGACTTCAAGAAGCC+CGG | 0.593848 | 3.1:+37524010 | MS.gene82682:CDS |
TCTTCGTTAACCCTATCTAT+CGG | 0.594965 | 3.1:+37526532 | MS.gene82682:CDS |
CGAATCTTCTGGTGAAGATG+AGG | 0.595263 | 3.1:+37528741 | MS.gene82682:CDS |
TGAAGAGCAATAGTATTGAT+GGG | 0.595651 | 3.1:+37521699 | MS.gene82682:CDS |
GTTGTTGAACCGAAGAGTAA+TGG | 0.596929 | 3.1:+37526489 | MS.gene82682:CDS |
CTGTAGGGTCGCAGTTGTGG+TGG | 0.597554 | 3.1:-37531032 | None:intergenic |
GAACGAGCCTCATGAGGTGA+AGG | 0.600308 | 3.1:+37522056 | MS.gene82682:CDS |
ATAGATAGGGTTAACGAAGA+GGG | 0.600356 | 3.1:-37526529 | None:intergenic |
GATCGCCTAGACGCTATCCT+CGG | 0.600406 | 3.1:+37526450 | MS.gene82682:CDS |
GGTTTGTTTGTAGGTTGATG+TGG | 0.600581 | 3.1:+37522498 | MS.gene82682:intron |
CGTCTCTTACGACCTCACCC+GGG | 0.603895 | 3.1:-37521155 | None:intergenic |
AAAGAAGCAAAAGGTAGATG+AGG | 0.604240 | 3.1:+37528232 | MS.gene82682:CDS |
AGTAACAACTCAGCTGAAAG+TGG | 0.605182 | 3.1:+37524174 | MS.gene82682:intron |
GAAAGATAGGGCCAACGAAG+AGG | 0.607839 | 3.1:-37521359 | None:intergenic |
ATGCATTATGCGGAGACCGA+AGG | 0.609027 | 3.1:+37526986 | MS.gene82682:CDS |
TTATGCAAGAAATGTGTCCC+CGG | 0.612072 | 3.1:+37526308 | MS.gene82682:CDS |
GGATTATCTCTTACCTGACG+TGG | 0.613896 | 3.1:+37526380 | MS.gene82682:CDS |
TTTACTTTGATATAGGCAAG+AGG | 0.615439 | 3.1:+37523326 | MS.gene82682:intron |
CACGTCCTCAGATTCATCAA+AGG | 0.616561 | 3.1:-37523455 | None:intergenic |
ATTGAAGAGGGAGACACTGA+AGG | 0.616651 | 3.1:+37530931 | MS.gene82682:intron |
TATCCTGAACGAGCCTCATG+AGG | 0.617030 | 3.1:+37522050 | MS.gene82682:CDS |
TTGACTTTGATATAGGCAAG+AGG | 0.619505 | 3.1:+37528177 | MS.gene82682:intron |
GGAATCCTTTGATGAATCTG+AGG | 0.620629 | 3.1:+37523450 | MS.gene82682:CDS |
CGAAAAGATGGGTTATGAGG+AGG | 0.622267 | 3.1:+37521670 | MS.gene82682:CDS |
CCGTTCATTCCAGACTTCAG+AGG | 0.624021 | 3.1:-37522538 | None:intergenic |
CCTCTGAAGTCTGGAATGAA+CGG | 0.625480 | 3.1:+37522538 | MS.gene82682:CDS |
GGAATCTTCTGATGAAGATG+AGG | 0.626607 | 3.1:+37525872 | MS.gene82682:CDS |
AAAGATGGGGTATGAGAAGG+AGG | 0.631960 | 3.1:+37526889 | MS.gene82682:CDS |
GGTAGTCGAAATTAGTTCCG+AGG | 0.633179 | 3.1:+37523429 | MS.gene82682:CDS |
CGTAACCGAGGATAGCGTCT+AGG | 0.634116 | 3.1:-37526455 | None:intergenic |
GATAGATAGGGTTAACGAAG+AGG | 0.635784 | 3.1:-37526530 | None:intergenic |
AGATATGGATCCAGGCACAA+AGG | 0.639525 | 3.1:+37530954 | MS.gene82682:CDS |
TGTTGAGTTTGAAACTGCAG+AGG | 0.644896 | 3.1:+37523812 | MS.gene82682:CDS |
AATCATGACGAAGAAGCTCA+AGG | 0.646327 | 3.1:+37521739 | MS.gene82682:CDS |
TGTAACCGAAGATAATGCCT+AGG | 0.649259 | 3.1:-37521284 | None:intergenic |
TATAGGCAAGAGGCAAGCTG+TGG | 0.650683 | 3.1:+37528187 | MS.gene82682:intron |
TGTTGAGTTTGCAACTACAG+AGG | 0.653264 | 3.1:+37529267 | MS.gene82682:CDS |
TGAATCTTCTGATGAAGATG+AGG | 0.655782 | 3.1:+37528521 | MS.gene82682:CDS |
GGGGAAGCAGATGCATTATG+CGG | 0.657065 | 3.1:+37526976 | MS.gene82682:CDS |
TAAGCTTCTTCAAGTTGCAG+CGG | 0.657667 | 3.1:+37521254 | MS.gene82682:CDS |
TCAACATGTGCATAGCCTAG+TGG | 0.659004 | 3.1:-37523795 | None:intergenic |
GTCTCTTACGACCTCACCCG+GGG | 0.660713 | 3.1:-37521154 | None:intergenic |
GGAGAAGCAGATGCGTTCTG+CGG | 0.668612 | 3.1:+37521760 | MS.gene82682:CDS |
GGTCCAGGTAGGCTGATGAG+GGG | 0.671239 | 3.1:-37531011 | None:intergenic |
GAACCGAAGAGTAATGGTTG+TGG | 0.671387 | 3.1:+37526495 | MS.gene82682:CDS |
TGAATCTTCTGATGAAGATG+AGG | 0.671408 | 3.1:+37522309 | MS.gene82682:CDS |
GAGTGCACCTGAAAAGAAAG+CGG | 0.672655 | 3.1:+37525824 | MS.gene82682:CDS |
AACAACTCAGCTGAAAGTGG+CGG | 0.672747 | 3.1:+37524177 | MS.gene82682:CDS |
ACAAAGGAACACAACCAAAG+CGG | 0.676874 | 3.1:+37530970 | MS.gene82682:CDS |
AAGTGGCGTCCATATCCTCA+AGG | 0.678657 | 3.1:+37524033 | MS.gene82682:CDS |
ACAGGCACTTGATAAGAATG+GGG | 0.678990 | 3.1:+37523969 | MS.gene82682:intron |
TTTCCCGAGCTAAATCAAGT+CGG | 0.679997 | 3.1:-37529448 | None:intergenic |
TATAGGCAAGAGGCAAGCTG+AGG | 0.681134 | 3.1:+37523336 | MS.gene82682:intron |
GGCCTGTGCTGATGAAGATG+AGG | 0.684193 | 3.1:+37522092 | MS.gene82682:CDS |
TATAAACCAGGCCTATACCA+AGG | 0.685036 | 3.1:+37529669 | MS.gene82682:CDS |
GAATGATGTCTTTCCTGACG+TGG | 0.685326 | 3.1:+37521209 | MS.gene82682:CDS |
CATCAAAGATGACGTAACCG+AGG | 0.686654 | 3.1:-37526467 | None:intergenic |
GTTTCTTAAGACCACATCCG+GGG | 0.688273 | 3.1:-37526325 | None:intergenic |
AAAGAAGCAAAAGGTAGACG+AGG | 0.690556 | 3.1:+37523381 | MS.gene82682:CDS |
TCATGACGAAGAAGTTCGAG+GGG | 0.691102 | 3.1:+37526957 | MS.gene82682:CDS |
CCTACAGGAGTCGAGCCTGG+AGG | 0.746648 | 3.1:+37531048 | MS.gene82682:CDS |
TAAGATTCTTCAAGTCATCG+CGG | 0.762237 | 3.1:+37526425 | MS.gene82682:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 37521147 | 37531098 | 37521147 | ID=MS.gene82682 |
chr3.1 | mRNA | 37521147 | 37531098 | 37521147 | ID=MS.gene82682.t1;Parent=MS.gene82682 |
chr3.1 | exon | 37521147 | 37521437 | 37521147 | ID=MS.gene82682.t1.exon1;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37521147 | 37521437 | 37521147 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37521608 | 37521791 | 37521608 | ID=MS.gene82682.t1.exon2;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37521608 | 37521791 | 37521608 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37522046 | 37522113 | 37522046 | ID=MS.gene82682.t1.exon3;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37522046 | 37522113 | 37522046 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37522229 | 37522330 | 37522229 | ID=MS.gene82682.t1.exon4;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37522229 | 37522330 | 37522229 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37522511 | 37522559 | 37522511 | ID=MS.gene82682.t1.exon5;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37522511 | 37522559 | 37522511 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37523341 | 37523477 | 37523341 | ID=MS.gene82682.t1.exon6;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37523341 | 37523477 | 37523341 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37523605 | 37523651 | 37523605 | ID=MS.gene82682.t1.exon7;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37523605 | 37523651 | 37523605 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37523728 | 37523845 | 37523728 | ID=MS.gene82682.t1.exon8;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37523728 | 37523845 | 37523728 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37523973 | 37524076 | 37523973 | ID=MS.gene82682.t1.exon9;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37523973 | 37524076 | 37523973 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37524176 | 37524245 | 37524176 | ID=MS.gene82682.t1.exon10;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37524176 | 37524245 | 37524176 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37525789 | 37525893 | 37525789 | ID=MS.gene82682.t1.exon11;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37525789 | 37525893 | 37525789 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37526279 | 37526611 | 37526279 | ID=MS.gene82682.t1.exon12;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37526279 | 37526611 | 37526279 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37526824 | 37527007 | 37526824 | ID=MS.gene82682.t1.exon13;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37526824 | 37527007 | 37526824 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37528192 | 37528280 | 37528192 | ID=MS.gene82682.t1.exon14;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37528192 | 37528280 | 37528192 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37528429 | 37528542 | 37528429 | ID=MS.gene82682.t1.exon15;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37528429 | 37528542 | 37528429 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37528661 | 37528762 | 37528661 | ID=MS.gene82682.t1.exon16;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37528661 | 37528762 | 37528661 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37529018 | 37529106 | 37529018 | ID=MS.gene82682.t1.exon17;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37529018 | 37529106 | 37529018 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37529183 | 37529300 | 37529183 | ID=MS.gene82682.t1.exon18;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37529183 | 37529300 | 37529183 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37529407 | 37529498 | 37529407 | ID=MS.gene82682.t1.exon19;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37529407 | 37529498 | 37529407 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37529656 | 37529690 | 37529656 | ID=MS.gene82682.t1.exon20;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37529656 | 37529690 | 37529656 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
chr3.1 | exon | 37530938 | 37531098 | 37530938 | ID=MS.gene82682.t1.exon21;Parent=MS.gene82682.t1 |
chr3.1 | CDS | 37530938 | 37531098 | 37530938 | ID=cds.MS.gene82682.t1;Parent=MS.gene82682.t1 |
Gene Sequence |
Protein sequence |