Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82663.t1 | AES70281.2 | 62 | 363 | 93 | 4 | 440 | 772 | 2 | 349 | 7.00E-81 | 312.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82663.t1 | Q7XTT4 | 53.3 | 107 | 49 | 1 | 665 | 770 | 434 | 540 | 4.2e-26 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82663.t1 | G7J1Z7 | 62.0 | 363 | 93 | 4 | 440 | 772 | 2 | 349 | 5.1e-81 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82663.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene82663 | 0.809482 | 1.85E-50 | -1.69E-46 |
| MS.gene050611 | MS.gene82663 | 0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene82663 | 0.809792 | 1.59E-50 | -1.69E-46 |
| MS.gene05531 | MS.gene82663 | 0.823556 | 1.30E-53 | -1.69E-46 |
| MS.gene055952 | MS.gene82663 | 0.809977 | 1.45E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene82663 | 0.803122 | 4.05E-49 | -1.69E-46 |
| MS.gene058580 | MS.gene82663 | 0.802589 | 5.22E-49 | -1.69E-46 |
| MS.gene059276 | MS.gene82663 | 0.811031 | 8.58E-51 | -1.69E-46 |
| MS.gene059460 | MS.gene82663 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene059584 | MS.gene82663 | 0.8112 | 7.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022751 | MS.gene82663 | PPI |
| MS.gene39295 | MS.gene82663 | PPI |
| MS.gene34516 | MS.gene82663 | PPI |
| MS.gene024089 | MS.gene82663 | PPI |
| MS.gene64679 | MS.gene82663 | PPI |
| MS.gene82663 | MS.gene02437 | PPI |
| MS.gene036674 | MS.gene82663 | PPI |
| MS.gene82663 | MS.gene007219 | PPI |
| MS.gene024088 | MS.gene82663 | PPI |
| MS.gene82663 | MS.gene033532 | PPI |
| MS.gene82663 | MS.gene57987 | PPI |
| MS.gene050316 | MS.gene82663 | PPI |
| MS.gene82663 | MS.gene58223 | PPI |
| MS.gene43653 | MS.gene82663 | PPI |
| MS.gene82663 | MS.gene041376 | PPI |
| MS.gene020216 | MS.gene82663 | PPI |
| MS.gene82663 | MS.gene010536 | PPI |
| MS.gene82663 | MS.gene007221 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82663.t1 | MTR_3g050860 | 65.123 | 367 | 75 | 5 | 440 | 772 | 2 | 349 | 3.26e-149 | 445 |
| MS.gene82663.t1 | MTR_3g050860 | 57.341 | 361 | 125 | 5 | 1 | 357 | 1 | 336 | 9.45e-114 | 353 |
| MS.gene82663.t1 | MTR_0439s0020 | 73.427 | 143 | 37 | 1 | 1 | 142 | 1 | 143 | 1.91e-65 | 216 |
| MS.gene82663.t1 | MTR_0439s0020 | 59.155 | 142 | 56 | 2 | 441 | 581 | 3 | 143 | 1.34e-46 | 164 |
| MS.gene82663.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 661 | 764 | 311 | 414 | 3.48e-45 | 172 |
| MS.gene82663.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 330 | 443 | 1.03e-22 | 103 |
| MS.gene82663.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 661 | 764 | 323 | 426 | 3.59e-45 | 172 |
| MS.gene82663.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 342 | 455 | 1.06e-22 | 103 |
| MS.gene82663.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 661 | 764 | 346 | 449 | 3.81e-45 | 173 |
| MS.gene82663.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 365 | 478 | 1.03e-22 | 104 |
| MS.gene82663.t1 | MTR_4g074930 | 80.000 | 50 | 10 | 0 | 215 | 264 | 11 | 60 | 1.04e-13 | 75.5 |
| MS.gene82663.t1 | MTR_4g074930 | 75.000 | 104 | 26 | 0 | 661 | 764 | 358 | 461 | 4.65e-45 | 173 |
| MS.gene82663.t1 | MTR_4g074930 | 50.000 | 118 | 50 | 2 | 278 | 390 | 377 | 490 | 1.16e-22 | 104 |
| MS.gene82663.t1 | MTR_4g074930 | 80.000 | 50 | 10 | 0 | 215 | 264 | 11 | 60 | 1.04e-13 | 75.5 |
| MS.gene82663.t1 | MTR_1g036430 | 48.515 | 101 | 51 | 1 | 663 | 762 | 276 | 376 | 1.44e-23 | 107 |
| MS.gene82663.t1 | MTR_1g036430 | 46.000 | 100 | 53 | 1 | 668 | 766 | 150 | 249 | 5.59e-22 | 102 |
| MS.gene82663.t1 | MTR_3g034200 | 36.975 | 119 | 69 | 5 | 477 | 592 | 42 | 157 | 2.67e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82663.t1 | AT3G18610 | 52.830 | 106 | 47 | 2 | 659 | 764 | 305 | 407 | 6.44e-27 | 117 |
| MS.gene82663.t1 | AT3G18610 | 44.068 | 118 | 53 | 3 | 278 | 390 | 325 | 434 | 4.22e-17 | 86.3 |
| MS.gene82663.t1 | AT3G18610 | 52.830 | 106 | 47 | 2 | 659 | 764 | 335 | 437 | 6.74e-27 | 117 |
| MS.gene82663.t1 | AT3G18610 | 44.068 | 118 | 53 | 3 | 278 | 390 | 355 | 464 | 3.62e-17 | 86.7 |
| MS.gene82663.t1 | AT3G18610 | 52.830 | 106 | 47 | 2 | 659 | 764 | 365 | 467 | 7.97e-27 | 117 |
| MS.gene82663.t1 | AT3G18610 | 44.068 | 118 | 53 | 3 | 278 | 390 | 385 | 494 | 3.37e-17 | 87.0 |
| MS.gene82663.t1 | AT1G48920 | 42.500 | 120 | 61 | 3 | 659 | 771 | 278 | 396 | 2.22e-24 | 108 |
| MS.gene82663.t1 | AT1G48920 | 36.975 | 119 | 69 | 2 | 278 | 390 | 298 | 416 | 3.87e-13 | 73.6 |
| MS.gene82663.t1 | AT1G45100 | 46.053 | 76 | 41 | 0 | 679 | 754 | 247 | 322 | 4.50e-11 | 67.0 |
Find 238 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTTGCATAACGAATTT+TGG | 0.090281 | 3.1:-37358731 | None:intergenic |
| CATAAGGATGGAAAGCTTAA+AGG | 0.173752 | 3.1:+37361667 | MS.gene82663:CDS |
| GAAGCTGTTTCTTCTAAAAT+AGG | 0.182499 | 3.1:+37358492 | MS.gene82663:CDS |
| TAAAGATCGTCTTTCTTTAC+AGG | 0.196172 | 3.1:-37360904 | None:intergenic |
| CAAGGATATCCTCTTATTAT+TGG | 0.202894 | 3.1:+37357502 | MS.gene82663:CDS |
| AGTAATTACCTGTTATTATT+AGG | 0.205492 | 3.1:-37361917 | None:intergenic |
| GAAGAAACAGCTTCTGCTTC+AGG | 0.224450 | 3.1:-37358483 | None:intergenic |
| AAGTGAAGTTATTACATCTT+AGG | 0.242413 | 3.1:+37355320 | MS.gene82663:CDS |
| GGAGGCTTTGTCAGGGGTTT+TGG | 0.242686 | 3.1:+37357652 | MS.gene82663:CDS |
| TTACTTCATGGACTGTTTAC+AGG | 0.256586 | 3.1:+37362066 | MS.gene82663:CDS |
| GAACCTTAGTTCGACCATTT+TGG | 0.260174 | 3.1:-37363602 | None:intergenic |
| GACATCCTCGGTGGACGTTT+GGG | 0.271271 | 3.1:-37363686 | None:intergenic |
| AATGCGTCAGTGTTGGTCTT+TGG | 0.291887 | 3.1:-37354890 | None:intergenic |
| TGACATCCTCGGTGGACGTT+TGG | 0.301947 | 3.1:-37363687 | None:intergenic |
| ATTGCCGTCATTGTTGATTC+AGG | 0.320712 | 3.1:-37363517 | None:intergenic |
| AAGCTGTTACTTCTAAAATA+AGG | 0.322995 | 3.1:+37355492 | MS.gene82663:CDS |
| ATGTACCTTAGGCCGCAAAT+AGG | 0.323473 | 3.1:+37363568 | MS.gene82663:CDS |
| TGTATTCCTCTGGCTAATCT+AGG | 0.324507 | 3.1:-37363637 | None:intergenic |
| AGAGGATATCCTTGAGGATA+TGG | 0.327826 | 3.1:-37357493 | None:intergenic |
| AATACAACATTAGAAGAAAC+AGG | 0.329306 | 3.1:-37362036 | None:intergenic |
| TCATCTTCTGAAGAATCTTC+TGG | 0.335928 | 3.1:+37360931 | MS.gene82663:CDS |
| TGTTGACCTATATAAGATTC+TGG | 0.336459 | 3.1:+37354437 | MS.gene82663:CDS |
| ACTCCTTCTCTCCGAAAGAT+AGG | 0.337370 | 3.1:-37358976 | None:intergenic |
| GTCAGATTCTTTCGCCTTGA+AGG | 0.342961 | 3.1:-37357108 | None:intergenic |
| TGTACCTTAGGCCGCAAATA+GGG | 0.347736 | 3.1:+37363569 | MS.gene82663:CDS |
| GTTGATGTATGTCTTGGTTA+TGG | 0.353092 | 3.1:+37357241 | MS.gene82663:CDS |
| TGACGTGGATCTTGAAAGTT+TGG | 0.353226 | 3.1:+37358828 | MS.gene82663:CDS |
| GAGGATATGGACGCCACTCC+CGG | 0.354161 | 3.1:-37357480 | None:intergenic |
| TTCTACAACGATGGTGTCCC+CGG | 0.363342 | 3.1:+37354389 | None:intergenic |
| ATGTCGAGAGCTTACGCGTT+TGG | 0.366733 | 3.1:-37357320 | None:intergenic |
| ACTTGTGACCATGGCTGAAA+TGG | 0.368546 | 3.1:+37354656 | MS.gene82663:CDS |
| AAGCTGTTTCTTCTAAAATA+GGG | 0.371461 | 3.1:+37358493 | MS.gene82663:CDS |
| GTGGCGGAGGAGGCTTTGTC+AGG | 0.376610 | 3.1:+37357644 | MS.gene82663:CDS |
| ATTACTCTTCTTCGAAAAGA+TGG | 0.379614 | 3.1:+37354910 | MS.gene82663:CDS |
| ATGTCAAGAGCTTACGTATT+GGG | 0.379625 | 3.1:-37361725 | None:intergenic |
| ATCCATCAGAGTTGGTCTTC+GGG | 0.381778 | 3.1:-37359286 | None:intergenic |
| TCTTCGTTAGCCCTATCTTT+CGG | 0.385024 | 3.1:+37354613 | MS.gene82663:CDS |
| ATGCGTCAGTGTTGGTCTTT+GGG | 0.387142 | 3.1:-37354889 | None:intergenic |
| CGTTTGGGGCGGGTTGTTGT+CGG | 0.387498 | 3.1:-37363671 | None:intergenic |
| CATATACTCCTAATAATAAC+AGG | 0.390293 | 3.1:+37361909 | MS.gene82663:CDS |
| TCACTTCACGAGGCTCGTTC+AGG | 0.391717 | 3.1:-37355303 | None:intergenic |
| CAACAACCATTCCACAATCT+TGG | 0.392218 | 3.1:-37357222 | None:intergenic |
| GAAGTAACAGCTTCTGCTGC+AGG | 0.395666 | 3.1:-37355482 | None:intergenic |
| GATGGAAAGCTTAAAGGCTT+TGG | 0.397596 | 3.1:+37361673 | MS.gene82663:CDS |
| TATTAGGCACTTAAGATGAA+TGG | 0.404097 | 3.1:+37361833 | MS.gene82663:intron |
| AATAGGCACTTGATAAGAAT+GGG | 0.408077 | 3.1:+37357419 | MS.gene82663:intron |
| ATTACTCTTCTTCGAAAAGA+TGG | 0.410597 | 3.1:+37359307 | MS.gene82663:CDS |
| TGACGTGGATACTCAAAGTT+TGG | 0.414598 | 3.1:+37354476 | MS.gene82663:CDS |
| GCGTTTCTTAAGACCACATC+CGG | 0.415976 | 3.1:-37358760 | None:intergenic |
| AGGAAAATATACCTTGGTAT+AGG | 0.418282 | 3.1:-37362112 | None:intergenic |
| CAAAGTTCGAACTAAGGTTC+TGG | 0.418284 | 3.1:+37363465 | MS.gene82663:CDS |
| TCTTCGTTAACCCTATCTTT+CGG | 0.418866 | 3.1:+37358965 | MS.gene82663:CDS |
| GTGAAGAGCAATAGTATTGA+TGG | 0.420089 | 3.1:+37354950 | MS.gene82663:CDS |
| AATCCATCAGAGTTGGTCTT+CGG | 0.430864 | 3.1:-37359287 | None:intergenic |
| AGCCCTATCTTTCGGAGAAA+AGG | 0.431404 | 3.1:+37354621 | MS.gene82663:CDS |
| TGTACGTCTTGCTTCTCATA+AGG | 0.432229 | 3.1:+37361651 | MS.gene82663:CDS |
| TGTTGGGAACTTATCCTTCA+AGG | 0.433682 | 3.1:+37357094 | MS.gene82663:CDS |
| GTGAAGAGCAATTATATTGA+TGG | 0.434863 | 3.1:+37359347 | MS.gene82663:CDS |
| AGGGGTCAATAAAGCCAAAA+TGG | 0.434881 | 3.1:+37363588 | MS.gene82663:CDS |
| AACGATGGTGTCCCCGGGTG+TGG | 0.437378 | 3.1:+37354395 | None:intergenic |
| AGAATCTTATATAGGTCAAC+AGG | 0.439517 | 3.1:-37354435 | None:intergenic |
| CCTCGGTGGACGTTTGGGGC+GGG | 0.440085 | 3.1:-37363681 | None:intergenic |
| AGTGAAGTTATTACATCTTA+GGG | 0.441387 | 3.1:+37355321 | MS.gene82663:CDS |
| GGCTGAAATGGACTTGGAAA+AGG | 0.444198 | 3.1:+37354668 | MS.gene82663:CDS |
| AAGAAACAGCTTCTGCTTCA+GGG | 0.451779 | 3.1:-37358482 | None:intergenic |
| TAATAGGCACTTGATAAGAA+TGG | 0.456193 | 3.1:+37357418 | MS.gene82663:intron |
| GACTTGATTTAGCTCGGGAG+AGG | 0.463792 | 3.1:+37361882 | MS.gene82663:CDS |
| TGAAAAGGACTTGAGGGATA+AGG | 0.466500 | 3.1:+37359023 | MS.gene82663:CDS |
| GCTTTATTGACCCCTATTTG+CGG | 0.467033 | 3.1:-37363580 | None:intergenic |
| ACTTGTGGAAAGCGCTGAAA+AGG | 0.467490 | 3.1:+37359008 | MS.gene82663:CDS |
| AAAGATAGGGTTAACGAAGA+TGG | 0.472513 | 3.1:-37358962 | None:intergenic |
| ATTAGGCACTTAAGATGAAT+GGG | 0.473468 | 3.1:+37361834 | MS.gene82663:intron |
| TATGTTGGGAACTTATCCTT+CGG | 0.474371 | 3.1:+37361498 | MS.gene82663:CDS |
| CTTCGAAAAGATGGGTTATG+AGG | 0.474734 | 3.1:+37354919 | MS.gene82663:CDS |
| TCAGCTGAAAGTGGCGGAGG+AGG | 0.475866 | 3.1:+37357634 | MS.gene82663:CDS |
| CTTTCGAAGACAATATATGT+TGG | 0.475870 | 3.1:+37357077 | MS.gene82663:intron |
| TAAGAGTAATGGAGAGGATG+AGG | 0.477121 | 3.1:+37357675 | MS.gene82663:CDS |
| TTTCGAAGACAATATATGTT+GGG | 0.477167 | 3.1:+37357078 | MS.gene82663:intron |
| TCAGAGTTGGTCTTCGGGAC+GGG | 0.477721 | 3.1:-37359281 | None:intergenic |
| TCTAATACCTCATCTTCATC+AGG | 0.477800 | 3.1:-37355349 | None:intergenic |
| AATTACCTTCCAATAATAAG+AGG | 0.478964 | 3.1:-37357511 | None:intergenic |
| GATCTTGAAAGTTTGGAGAA+TGG | 0.482941 | 3.1:+37358835 | MS.gene82663:CDS |
| GAGGTGTACCATGGATATCC+TGG | 0.484184 | 3.1:-37363414 | None:intergenic |
| TGCCAAACAAAAGGTATTGA+AGG | 0.484854 | 3.1:+37356889 | MS.gene82663:CDS |
| TGCCAAACAAAAGGTATTGA+AGG | 0.484854 | 3.1:+37360692 | MS.gene82663:CDS |
| TTACTCTTCTTCGAAAAGAT+GGG | 0.485859 | 3.1:+37359308 | MS.gene82663:CDS |
| TGATAGTTCTGATGAAGAAT+CGG | 0.491538 | 3.1:+37355535 | MS.gene82663:CDS |
| TGACCCCTATTTGCGGCCTA+AGG | 0.493447 | 3.1:-37363573 | None:intergenic |
| GAACTGAAGCGTACTAGTTA+CGG | 0.493616 | 3.1:+37354576 | MS.gene82663:CDS |
| GACTTCAAGAAGCCCGGGAG+TGG | 0.494287 | 3.1:+37357467 | MS.gene82663:CDS |
| TGGACTGTTTACAGGCGTGC+AGG | 0.495759 | 3.1:+37362074 | MS.gene82663:CDS |
| CGAGGTTGCTGCCAAACAAA+AGG | 0.496709 | 3.1:+37356880 | MS.gene82663:CDS |
| ATGGTTGTTGATGTATGTCT+TGG | 0.496788 | 3.1:+37357235 | MS.gene82663:CDS |
| CTTGATCATCTGTATTCCTC+TGG | 0.497518 | 3.1:-37363647 | None:intergenic |
| CTGTCCGACTTGATTTAGCT+CGG | 0.502487 | 3.1:+37361876 | MS.gene82663:CDS |
| AACCCTATCTTTCGGAGAGA+AGG | 0.502877 | 3.1:+37358973 | MS.gene82663:CDS |
| CGTCATTGTTGATTCAGGCA+TGG | 0.504135 | 3.1:-37363512 | None:intergenic |
| GTCAGTGTTGGTCTTTGGGA+TGG | 0.506964 | 3.1:-37354885 | None:intergenic |
| TTACTCTTCTTCGAAAAGAT+GGG | 0.507362 | 3.1:+37354911 | MS.gene82663:CDS |
| TCCTCGGTGGACGTTTGGGG+CGG | 0.508025 | 3.1:-37363682 | None:intergenic |
| AGTTTCTTCAAAGAAGCAAA+AGG | 0.509361 | 3.1:+37360656 | MS.gene82663:CDS |
| TTCCAAGTCCATTTCAGCCA+TGG | 0.509729 | 3.1:-37354664 | None:intergenic |
| GACCATGGCTGAAATGGACT+TGG | 0.509783 | 3.1:+37354662 | MS.gene82663:CDS |
| GGTTACATCGTCTTTGATGT+TGG | 0.509911 | 3.1:+37354552 | MS.gene82663:CDS |
| GTTCGAACTTTGCTCTCAGT+GGG | 0.510129 | 3.1:-37363454 | None:intergenic |
| CATTCACCAGAATCTTATAT+AGG | 0.510974 | 3.1:-37354443 | None:intergenic |
| GATCTCCTAGGCATTATCTT+CGG | 0.511416 | 3.1:+37354531 | MS.gene82663:CDS |
| AAGCCAAAATGGTCGAACTA+AGG | 0.512436 | 3.1:+37363599 | MS.gene82663:CDS |
| ACTTGATTTAGCTCGGGAGA+GGG | 0.513360 | 3.1:+37361883 | MS.gene82663:CDS |
| GTGTGAAGACATTATATGTT+GGG | 0.513802 | 3.1:+37361484 | MS.gene82663:CDS |
| TGACCACAACCATTACTCTT+CGG | 0.514416 | 3.1:-37358931 | None:intergenic |
| TGAGGTTGCTGCCAAACAAA+AGG | 0.514624 | 3.1:+37360683 | MS.gene82663:CDS |
| CGTGTGAAGACATTATATGT+TGG | 0.515977 | 3.1:+37361483 | MS.gene82663:CDS |
| AATGGTCGAACTAAGGTTCA+AGG | 0.517845 | 3.1:+37363606 | MS.gene82663:CDS |
| AATATACCTTGGTATAGGCC+TGG | 0.518085 | 3.1:-37362107 | None:intergenic |
| GCGTCTCTTACGACCACACC+CGG | 0.518110 | 3.1:-37354408 | None:intergenic |
| CGACATATTTAAGATTCTCG+TGG | 0.520223 | 3.1:+37358792 | MS.gene82663:CDS |
| TTCACAGGAGAAACAACAAC+AGG | 0.521749 | 3.1:-37356081 | None:intergenic |
| AGAACTATCAGCTTTCTTTG+CGG | 0.524386 | 3.1:-37355522 | None:intergenic |
| GATATCCTCTTATTATTGGA+AGG | 0.526173 | 3.1:+37357506 | MS.gene82663:CDS |
| AAGCGCTGAAAAGGACTTGA+GGG | 0.526550 | 3.1:+37359017 | MS.gene82663:CDS |
| TGTCCGACTTGATTTAGCTC+GGG | 0.530721 | 3.1:+37361877 | MS.gene82663:CDS |
| CGTCTTGCTTCTCATAAGGA+TGG | 0.533795 | 3.1:+37361655 | MS.gene82663:CDS |
| GATACTCAAAGTTTGGTGAA+TGG | 0.534335 | 3.1:+37354483 | MS.gene82663:CDS |
| AGTGACTTCAAAGAAGCAAA+AGG | 0.536343 | 3.1:+37356853 | MS.gene82663:CDS |
| TCAGTGTTGGTCTTTGGGAT+GGG | 0.537407 | 3.1:-37354884 | None:intergenic |
| GTCCCGAAGACCAACTCTGA+TGG | 0.538106 | 3.1:+37359284 | MS.gene82663:CDS |
| AGTTCGAACTTTGCTCTCAG+TGG | 0.541521 | 3.1:-37363455 | None:intergenic |
| GGATATCCATGGTACACCTC+AGG | 0.542579 | 3.1:+37363417 | MS.gene82663:CDS |
| TGAGAGCAAAGTTCGAACTA+AGG | 0.543002 | 3.1:+37363459 | MS.gene82663:CDS |
| CGCTACTCGACTTGTGACCA+TGG | 0.544412 | 3.1:+37354647 | MS.gene82663:CDS |
| CTTTGATGAATCTGAGGACG+TGG | 0.545887 | 3.1:+37356937 | MS.gene82663:CDS |
| ATGTCCGACTTCAAGAAGCC+CGG | 0.547348 | 3.1:+37357461 | MS.gene82663:CDS |
| GCAAGCTGAGGAAGAAGTCA+AGG | 0.547712 | 3.1:+37356829 | MS.gene82663:CDS |
| TGAAGAGCAATTATATTGAT+GGG | 0.547887 | 3.1:+37359348 | MS.gene82663:CDS |
| GAGCAATTATATTGATGGGA+AGG | 0.549182 | 3.1:+37359352 | MS.gene82663:CDS |
| AGGAGTCGCTTCTAAACTTG+TGG | 0.551270 | 3.1:+37358993 | MS.gene82663:CDS |
| ATCAGAGTTGGTCTTCGGGA+CGG | 0.551912 | 3.1:-37359282 | None:intergenic |
| CGTGCAGGATTCTATAAACC+AGG | 0.552805 | 3.1:+37362089 | MS.gene82663:CDS |
| ATCATGACGAAGAAGCTCAA+GGG | 0.553264 | 3.1:+37354992 | MS.gene82663:CDS |
| CTCCTTCTCTCCGAAAGATA+GGG | 0.554373 | 3.1:-37358975 | None:intergenic |
| AAGATATGTGTCCCCGGATG+TGG | 0.555259 | 3.1:+37358747 | MS.gene82663:CDS |
| AAACTTTGAGTATCCACGTC+AGG | 0.555864 | 3.1:-37354474 | None:intergenic |
| AACTCAGCTGAAAGTGGCGG+AGG | 0.557051 | 3.1:+37357631 | MS.gene82663:CDS |
| CCGTTCATTACAGACTTCAC+AGG | 0.557711 | 3.1:-37356096 | None:intergenic |
| CGTTTCTTAAGACCACATCC+GGG | 0.561543 | 3.1:-37358759 | None:intergenic |
| AGGATATGGACGCCACTCCC+GGG | 0.562181 | 3.1:-37357479 | None:intergenic |
| GGCGGAGGAGGCTTTGTCAG+GGG | 0.562222 | 3.1:+37357646 | MS.gene82663:CDS |
| GTATTCCTCTGGCTAATCTA+GGG | 0.563962 | 3.1:-37363636 | None:intergenic |
| GATCGCCAAGACGCTATCCT+CGG | 0.566309 | 3.1:+37358883 | MS.gene82663:CDS |
| GCAAGGTGCTGCTTACGTCT+CGG | 0.567387 | 3.1:+37354859 | MS.gene82663:intron |
| TCTACAACGATGGTGTCCCC+GGG | 0.568555 | 3.1:+37354390 | None:intergenic |
| GCAAGCTGTGGAAGAAGTCG+AGG | 0.568949 | 3.1:+37360632 | MS.gene82663:CDS |
| TGGCGGAGGAGGCTTTGTCA+GGG | 0.569871 | 3.1:+37357645 | MS.gene82663:CDS |
| AGATTCATCAAAGGATTCCT+CGG | 0.570696 | 3.1:-37356927 | None:intergenic |
| AAACTTTCAAGATCCACGTC+AGG | 0.572396 | 3.1:-37358826 | None:intergenic |
| ATCATGACGAAGAAGTTCGA+GGG | 0.572521 | 3.1:+37359389 | MS.gene82663:CDS |
| CAGAGGAATACAGATGATCA+AGG | 0.573722 | 3.1:+37363648 | MS.gene82663:CDS |
| AAAGATGGGTTATGAGGAGG+AGG | 0.574952 | 3.1:+37354925 | MS.gene82663:CDS |
| CGAAAAGATGGGGTATGAGA+AGG | 0.577206 | 3.1:+37359319 | MS.gene82663:CDS |
| GATGGGTTATGAGGAGGAGG+CGG | 0.578268 | 3.1:+37354928 | MS.gene82663:CDS |
| CTTGATTTAGCTCGGGAGAG+GGG | 0.578698 | 3.1:+37361884 | MS.gene82663:CDS |
| ACATCCTCGGTGGACGTTTG+GGG | 0.578826 | 3.1:-37363685 | None:intergenic |
| GAAGAGTAATCCATCAGAGT+TGG | 0.583113 | 3.1:-37359294 | None:intergenic |
| ATGCGTTCTGCGGAGACCGA+AGG | 0.587376 | 3.1:+37355022 | MS.gene82663:CDS |
| GAAGAGTAATGCGTCAGTGT+TGG | 0.587807 | 3.1:-37354897 | None:intergenic |
| GTACCTTAGGCCGCAAATAG+GGG | 0.589414 | 3.1:+37363570 | MS.gene82663:CDS |
| ATCTATGAAGTCTGGAGCGG+AGG | 0.589831 | 3.1:+37358702 | MS.gene82663:intron |
| TACTCTTCTTCGAAAAGATG+GGG | 0.590062 | 3.1:+37359309 | MS.gene82663:CDS |
| CATCATGACGAAGAAGTTCG+AGG | 0.591689 | 3.1:+37359388 | MS.gene82663:CDS |
| ATGCATTATGCGGAGACTGA+AGG | 0.591978 | 3.1:+37359419 | MS.gene82663:CDS |
| CGTAACCGAGGATAGCGTCT+TGG | 0.592411 | 3.1:-37358888 | None:intergenic |
| TTGCGGCCTAAGGTACATCA+TGG | 0.593026 | 3.1:-37363563 | None:intergenic |
| GTTGCAGCGGATGATCTCCT+AGG | 0.593344 | 3.1:+37354519 | MS.gene82663:CDS |
| GACAGTCCATGATGTACCTT+AGG | 0.593566 | 3.1:+37363557 | MS.gene82663:CDS |
| GCTTTGCACGTGTTTACTTG+TGG | 0.594793 | 3.1:-37363728 | None:intergenic |
| TGAAGAGCAATAGTATTGAT+GGG | 0.595651 | 3.1:+37354951 | MS.gene82663:CDS |
| GAAAGATAGGGCTAACGAAG+AGG | 0.596707 | 3.1:-37354611 | None:intergenic |
| TGTCCGACTTCAAGAAGCCC+GGG | 0.597660 | 3.1:+37357462 | MS.gene82663:CDS |
| TGTTGAGTTTGCAACTGCAG+AGG | 0.598820 | 3.1:+37361699 | MS.gene82663:CDS |
| AAGGTTCTGGCGGAACGCAA+AGG | 0.601781 | 3.1:+37363478 | MS.gene82663:CDS |
| AAAGAAGCAAAAGGTAGATG+AGG | 0.604240 | 3.1:+37360665 | MS.gene82663:CDS |
| AGTAACAACTCAGCTGAAAG+TGG | 0.605182 | 3.1:+37357625 | MS.gene82663:intron |
| AAAGATAGGGCTAACGAAGA+GGG | 0.608748 | 3.1:-37354610 | None:intergenic |
| ACTCCCGGGCTTCTTGAAGT+CGG | 0.608851 | 3.1:-37357465 | None:intergenic |
| TTATGCAAGATATGTGTCCC+CGG | 0.610053 | 3.1:+37358741 | MS.gene82663:CDS |
| GAACCGAAGAGTAATGGTTG+TGG | 0.611924 | 3.1:+37358928 | MS.gene82663:CDS |
| AATCATGACGAAGAAGCTCA+AGG | 0.613048 | 3.1:+37354991 | MS.gene82663:CDS |
| GGATTATCTCTTACCTGACG+TGG | 0.613896 | 3.1:+37358813 | MS.gene82663:CDS |
| TTTACTTTGATATAGGCAAG+AGG | 0.615439 | 3.1:+37356807 | MS.gene82663:intron |
| TTGCATCCTGAGGTGTACCA+TGG | 0.615559 | 3.1:-37363423 | None:intergenic |
| CACGTCCTCAGATTCATCAA+AGG | 0.616561 | 3.1:-37356936 | None:intergenic |
| TTGACTTTGATATAGGCAAG+AGG | 0.619505 | 3.1:+37360610 | MS.gene82663:intron |
| GGAATCCTTTGATGAATCTG+AGG | 0.620629 | 3.1:+37356931 | MS.gene82663:CDS |
| CATGCCTGAATCAACAATGA+CGG | 0.621646 | 3.1:+37363513 | MS.gene82663:CDS |
| CGAAAAGATGGGTTATGAGG+AGG | 0.622267 | 3.1:+37354922 | MS.gene82663:CDS |
| GGAATCTTCTGATGAAGATG+AGG | 0.626607 | 3.1:+37358563 | MS.gene82663:CDS |
| GTCGTTGAACCGAAGAGTAA+TGG | 0.627136 | 3.1:+37358922 | MS.gene82663:CDS |
| TCATGACGAAGAAGCTCAAG+GGG | 0.629217 | 3.1:+37354993 | MS.gene82663:CDS |
| CGTCTCTTACGACCACACCC+GGG | 0.631420 | 3.1:-37354407 | None:intergenic |
| ACCAAGGTCCAGGATATCCA+TGG | 0.631502 | 3.1:+37363406 | MS.gene82663:intron |
| AAAGATGGGGTATGAGAAGG+AGG | 0.631960 | 3.1:+37359322 | MS.gene82663:CDS |
| GGTAGTCGAAATTAGTTCCG+AGG | 0.633179 | 3.1:+37356910 | MS.gene82663:CDS |
| AAAGCGCTGAAAAGGACTTG+AGG | 0.634334 | 3.1:+37359016 | MS.gene82663:CDS |
| CCTGTGAAGTCTGTAATGAA+CGG | 0.636917 | 3.1:+37356096 | MS.gene82663:CDS |
| TTCATCTATGAAGTCTGGAG+CGG | 0.637375 | 3.1:+37358699 | MS.gene82663:intron |
| GGTCTGTCCTGATGAAGATG+AGG | 0.638915 | 3.1:+37355342 | MS.gene82663:CDS |
| TTGCACGTGTTTACTTGTGG+AGG | 0.639379 | 3.1:-37363725 | None:intergenic |
| TGTTGAGTTTGAAACTGCAG+AGG | 0.644896 | 3.1:+37357294 | MS.gene82663:CDS |
| TGTAACCGAAGATAATGCCT+AGG | 0.649259 | 3.1:-37354536 | None:intergenic |
| TATAGGCAAGAGGCAAGCTG+TGG | 0.650683 | 3.1:+37360620 | MS.gene82663:intron |
| GTCTCTTACGACCACACCCG+GGG | 0.653034 | 3.1:-37354406 | None:intergenic |
| TGTAATAACTTCACTTCACG+AGG | 0.654474 | 3.1:-37355313 | None:intergenic |
| AGTTCGAACTAAGGTTCTGG+CGG | 0.655667 | 3.1:+37363468 | MS.gene82663:CDS |
| TGAATCTTCTGATGAAGATG+AGG | 0.655782 | 3.1:+37360954 | MS.gene82663:CDS |
| GGGGAAGCAGATGCATTATG+CGG | 0.657065 | 3.1:+37359409 | MS.gene82663:CDS |
| TAAGCTTCTTCAAGTTGCAG+CGG | 0.657667 | 3.1:+37354506 | MS.gene82663:CDS |
| TCAACATGTGCATAGCCTAG+TGG | 0.659004 | 3.1:-37357277 | None:intergenic |
| TGAATCTTCTGATGAAGATG+AGG | 0.667174 | 3.1:+37355559 | MS.gene82663:CDS |
| GGGGAAGCAGATGCGTTCTG+CGG | 0.668612 | 3.1:+37355012 | MS.gene82663:CDS |
| ATAATAAGAGGATATCCTTG+AGG | 0.672467 | 3.1:-37357499 | None:intergenic |
| GAGTGCACCTGAAAAGAAAG+CGG | 0.672655 | 3.1:+37358515 | MS.gene82663:CDS |
| AACAACTCAGCTGAAAGTGG+CGG | 0.672747 | 3.1:+37357628 | MS.gene82663:CDS |
| GAGTGGCGTCCATATCCTCA+AGG | 0.678657 | 3.1:+37357484 | MS.gene82663:CDS |
| TCTCCCGAGCTAAATCAAGT+CGG | 0.679997 | 3.1:-37361880 | None:intergenic |
| ATAGGCACTTGATAAGAATG+GGG | 0.680446 | 3.1:+37357420 | MS.gene82663:intron |
| TATAGGCAAGAGGCAAGCTG+AGG | 0.681134 | 3.1:+37356817 | MS.gene82663:intron |
| TATAAACCAGGCCTATACCA+AGG | 0.685036 | 3.1:+37362101 | MS.gene82663:CDS |
| GAATGATGTCTTTCCTGACG+TGG | 0.685326 | 3.1:+37354461 | MS.gene82663:CDS |
| GTTTCTTAAGACCACATCCG+GGG | 0.688273 | 3.1:-37358758 | None:intergenic |
| AAAGAAGCAAAAGGTAGACG+AGG | 0.690556 | 3.1:+37356862 | MS.gene82663:CDS |
| TCATGACGAAGAAGTTCGAG+GGG | 0.691102 | 3.1:+37359390 | MS.gene82663:CDS |
| ATACAACATTAGAAGAAACA+GGG | 0.691600 | 3.1:-37362035 | None:intergenic |
| CATCAAAGATGACGTAACCG+AGG | 0.714623 | 3.1:-37358900 | None:intergenic |
| GCTTGCCCTAGATTAGCCAG+AGG | 0.726595 | 3.1:+37363631 | MS.gene82663:CDS |
| CCCGCCCCAAACGTCCACCG+AGG | 0.730115 | 3.1:+37363681 | MS.gene82663:CDS |
| GGTCGAACTAAGGTTCAAGG+TGG | 0.741730 | 3.1:+37363609 | MS.gene82663:CDS |
| TAAGATTCTTCAAGTCATCG+CGG | 0.762237 | 3.1:+37358858 | MS.gene82663:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 37354399 | 37363756 | 37354399 | ID=MS.gene82663 |
| chr3.1 | mRNA | 37354399 | 37363756 | 37354399 | ID=MS.gene82663.t1;Parent=MS.gene82663 |
| chr3.1 | exon | 37354399 | 37354689 | 37354399 | ID=MS.gene82663.t1.exon1;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37354399 | 37354689 | 37354399 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37354860 | 37355043 | 37354860 | ID=MS.gene82663.t1.exon2;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37354860 | 37355043 | 37354860 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37355296 | 37355363 | 37355296 | ID=MS.gene82663.t1.exon3;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37355296 | 37355363 | 37355296 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37355479 | 37355580 | 37355479 | ID=MS.gene82663.t1.exon4;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37355479 | 37355580 | 37355479 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37356069 | 37356117 | 37356069 | ID=MS.gene82663.t1.exon5;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37356069 | 37356117 | 37356069 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37356822 | 37356958 | 37356822 | ID=MS.gene82663.t1.exon6;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37356822 | 37356958 | 37356822 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37357086 | 37357132 | 37357086 | ID=MS.gene82663.t1.exon7;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37357086 | 37357132 | 37357086 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37357210 | 37357327 | 37357210 | ID=MS.gene82663.t1.exon8;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37357210 | 37357327 | 37357210 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37357424 | 37357527 | 37357424 | ID=MS.gene82663.t1.exon9;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37357424 | 37357527 | 37357424 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37357627 | 37357696 | 37357627 | ID=MS.gene82663.t1.exon10;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37357627 | 37357696 | 37357627 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37358480 | 37358584 | 37358480 | ID=MS.gene82663.t1.exon11;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37358480 | 37358584 | 37358480 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37358712 | 37359044 | 37358712 | ID=MS.gene82663.t1.exon12;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37358712 | 37359044 | 37358712 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37359257 | 37359440 | 37359257 | ID=MS.gene82663.t1.exon13;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37359257 | 37359440 | 37359257 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37360625 | 37360713 | 37360625 | ID=MS.gene82663.t1.exon14;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37360625 | 37360713 | 37360625 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37360862 | 37360975 | 37360862 | ID=MS.gene82663.t1.exon15;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37360862 | 37360975 | 37360862 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37361450 | 37361538 | 37361450 | ID=MS.gene82663.t1.exon16;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37361450 | 37361538 | 37361450 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37361615 | 37361732 | 37361615 | ID=MS.gene82663.t1.exon17;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37361615 | 37361732 | 37361615 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37361839 | 37361930 | 37361839 | ID=MS.gene82663.t1.exon18;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37361839 | 37361930 | 37361839 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37362017 | 37362122 | 37362017 | ID=MS.gene82663.t1.exon19;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37362017 | 37362122 | 37362017 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| chr3.1 | exon | 37363412 | 37363756 | 37363412 | ID=MS.gene82663.t1.exon20;Parent=MS.gene82663.t1 |
| chr3.1 | CDS | 37363412 | 37363756 | 37363412 | ID=cds.MS.gene82663.t1;Parent=MS.gene82663.t1 |
| Gene Sequence |
| Protein sequence |
