Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023400.t1 | XP_013446541.1 | 94.4 | 710 | 35 | 1 | 1 | 710 | 89 | 793 | 0.00E+00 | 1381.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023400.t1 | F4HTM3 | 63.6 | 711 | 256 | 2 | 1 | 710 | 96 | 804 | 1.2e-281 | 970.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023400.t1 | A0A072TUN9 | 94.4 | 710 | 35 | 1 | 1 | 710 | 89 | 793 | 0.0e+00 | 1381.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09201 | MS.gene023400 | PPI |
| MS.gene023400 | MS.gene023402 | PPI |
| MS.gene08447 | MS.gene023400 | PPI |
| MS.gene023400 | MS.gene09198 | PPI |
| MS.gene023400 | MS.gene08447 | PPI |
| MS.gene023400 | MS.gene09043 | PPI |
| MS.gene023400 | MS.gene09042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023400.t1 | MTR_8g080290 | 96.479 | 710 | 20 | 1 | 1 | 710 | 89 | 793 | 0.0 | 1422 |
| MS.gene023400.t1 | MTR_8g080290 | 95.906 | 684 | 23 | 1 | 27 | 710 | 38 | 716 | 0.0 | 1355 |
| MS.gene023400.t1 | MTR_8g080290 | 96.177 | 654 | 20 | 1 | 1 | 654 | 89 | 737 | 0.0 | 1303 |
| MS.gene023400.t1 | MTR_8g080360 | 82.535 | 710 | 124 | 0 | 1 | 710 | 92 | 801 | 0.0 | 1247 |
| MS.gene023400.t1 | MTR_8g080290 | 95.087 | 631 | 26 | 1 | 1 | 631 | 89 | 714 | 0.0 | 1243 |
| MS.gene023400.t1 | MTR_8g080290 | 96.316 | 570 | 16 | 1 | 141 | 710 | 14 | 578 | 0.0 | 1134 |
| MS.gene023400.t1 | MTR_8g080290 | 96.926 | 488 | 15 | 0 | 1 | 488 | 89 | 576 | 0.0 | 990 |
| MS.gene023400.t1 | MTR_8g080290 | 97.119 | 486 | 14 | 0 | 1 | 486 | 89 | 574 | 0.0 | 987 |
| MS.gene023400.t1 | MTR_8g080290 | 92.564 | 511 | 15 | 1 | 1 | 488 | 89 | 599 | 0.0 | 977 |
| MS.gene023400.t1 | MTR_8g080290 | 96.104 | 462 | 18 | 0 | 1 | 462 | 89 | 550 | 0.0 | 926 |
| MS.gene023400.t1 | MTR_8g080290 | 96.682 | 422 | 14 | 0 | 1 | 422 | 89 | 510 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023400.t1 | AT1G67490 | 63.572 | 711 | 256 | 2 | 1 | 710 | 96 | 804 | 0.0 | 962 |
| MS.gene023400.t1 | AT1G24320 | 59.072 | 711 | 286 | 3 | 2 | 710 | 34 | 741 | 0.0 | 895 |
| MS.gene023400.t1 | AT1G24320 | 56.761 | 710 | 273 | 4 | 2 | 710 | 34 | 710 | 0.0 | 848 |
| MS.gene023400.t1 | AT1G67490 | 63.211 | 598 | 219 | 1 | 114 | 710 | 123 | 720 | 0.0 | 806 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGAGCATACTTTGATTT+TGG | 0.139382 | 4.2:-14828066 | MS.gene023400:CDS |
| GCTGCTGTTGGAAGCTTATT+AGG | 0.208927 | 4.2:-14832768 | MS.gene023400:CDS |
| AAGCATAATGGACGTGATTA+TGG | 0.222490 | 4.2:-14838428 | MS.gene023400:CDS |
| TTTCAAATCGCAGCCTATTA+TGG | 0.223778 | 4.2:-14827468 | MS.gene023400:CDS |
| CAAGCTAGGTTCAACTTAAA+TGG | 0.233898 | 4.2:-14827915 | MS.gene023400:intron |
| CCAGCTTGTCCGGGAAGTTT+TGG | 0.237094 | 4.2:-14827857 | MS.gene023400:CDS |
| ACATATTGAATGCAGAATTA+TGG | 0.240451 | 4.2:-14828894 | MS.gene023400:intron |
| AATTGAGGAGCAATTTAATT+AGG | 0.244298 | 4.2:-14827077 | None:intergenic |
| TACTTCATGCTGCAGATTAT+TGG | 0.247768 | 4.2:-14834911 | MS.gene023400:intron |
| CATATTGGAGAGGTACAATT+TGG | 0.259206 | 4.2:-14827260 | MS.gene023400:CDS |
| TTGAAGTTGGTTCCTCAAAT+TGG | 0.266586 | 4.2:-14827823 | MS.gene023400:CDS |
| GGTGGCATTGGTTACTTCTA+TGG | 0.288431 | 4.2:-14832747 | MS.gene023400:CDS |
| TTCTTTATAATTCAGTTCAT+TGG | 0.295123 | 4.2:+14832995 | None:intergenic |
| CATTGAAGAGTTGTTGAATA+AGG | 0.303329 | 4.2:-14828991 | MS.gene023400:CDS |
| GCATAAGGAAAGTTTGTATT+GGG | 0.307657 | 4.2:-14839505 | MS.gene023400:CDS |
| TGTTAATTTCTTCCCATTCA+TGG | 0.324538 | 4.2:-14827797 | MS.gene023400:CDS |
| CTGTTCTTGGAGCGTGCCTT+TGG | 0.331181 | 4.2:-14830341 | MS.gene023400:CDS |
| CAAATTGTACCTCTCCAATA+TGG | 0.336633 | 4.2:+14827261 | None:intergenic |
| ATGTGACTCGCCAGCTTGTC+CGG | 0.344079 | 4.2:-14827867 | MS.gene023400:CDS |
| GATACCACGAGAGCAAATTC+TGG | 0.348835 | 4.2:-14831177 | MS.gene023400:CDS |
| CATATTTCATTGGATATCAT+TGG | 0.349159 | 4.2:-14831233 | MS.gene023400:CDS |
| AAGCGCGTCAATAGTCTTAC+AGG | 0.349761 | 4.2:-14834821 | MS.gene023400:intron |
| CTTATTCAACAACTCTTCAA+TGG | 0.352319 | 4.2:+14828992 | None:intergenic |
| GAGGATGCCTTAAGTGCTTA+TGG | 0.362574 | 4.2:-14838458 | MS.gene023400:CDS |
| AAGTGAGATCTCTCTGTTCT+TGG | 0.369161 | 4.2:-14830354 | MS.gene023400:CDS |
| TTGGGATATTCATATTTCAT+TGG | 0.377449 | 4.2:-14831243 | MS.gene023400:CDS |
| GGGGAAAGCAGTGGTTATGG+TGG | 0.381635 | 4.2:-14838347 | MS.gene023400:CDS |
| ATGCTGCTTATATATCATAT+TGG | 0.387954 | 4.2:-14831555 | MS.gene023400:CDS |
| CAGTGGTTATGGTGGGGATT+GGG | 0.390163 | 4.2:-14838339 | MS.gene023400:CDS |
| CACTTCCAGACGCTGACCTC+TGG | 0.399520 | 4.2:-14829110 | MS.gene023400:intron |
| CCATTTGGATCTTAGATGTT+GGG | 0.403358 | 4.2:-14829042 | MS.gene023400:CDS |
| CAGGACTCCACAATCTTTGA+TGG | 0.403931 | 4.2:-14838543 | MS.gene023400:CDS |
| TGTGAAATTGCTATTAGATC+TGG | 0.405358 | 4.2:-14828865 | MS.gene023400:CDS |
| GTCCGTAGTCAGTCCATAAT+AGG | 0.406256 | 4.2:+14827455 | None:intergenic |
| GAGAGTTCGTTACTTGCATC+TGG | 0.407973 | 4.2:-14837987 | MS.gene023400:CDS |
| AGCATAATGGACGTGATTAT+GGG | 0.410264 | 4.2:-14838427 | MS.gene023400:CDS |
| TGCTGAGGAACATACTCCTC+TGG | 0.413213 | 4.2:+14831042 | None:intergenic |
| TGTCCAACCATAAGCACTTA+AGG | 0.414356 | 4.2:+14838451 | None:intergenic |
| TGTAGACTGAGACCTTGTTT+TGG | 0.415661 | 4.2:+14827420 | None:intergenic |
| TCAATGTTGTTGCAGTTTCA+AGG | 0.416153 | 4.2:-14839531 | MS.gene023400:intron |
| TTAGATTTGATGAACATTGA+TGG | 0.416706 | 4.2:-14831203 | MS.gene023400:CDS |
| AGCATAAGGAAAGTTTGTAT+TGG | 0.416961 | 4.2:-14839506 | MS.gene023400:CDS |
| AAGTTCAGATGAACGCCATT+TGG | 0.417413 | 4.2:-14829057 | MS.gene023400:CDS |
| GTTAATTTCTTCCCATTCAT+GGG | 0.417489 | 4.2:-14827796 | MS.gene023400:CDS |
| CGGGCCTCTCCAAAACTTCC+CGG | 0.422481 | 4.2:+14827848 | None:intergenic |
| GTTGGAGGATTTCCATTTGT+TGG | 0.424166 | 4.2:+14831018 | None:intergenic |
| CAGAACATGAGGCTCCATAT+TGG | 0.430301 | 4.2:-14827275 | MS.gene023400:CDS |
| CTAAGTGGAATGAGGACTTT+GGG | 0.435159 | 4.2:-14838091 | MS.gene023400:CDS |
| CTATCTCATTCAAGGGATCA+TGG | 0.438181 | 4.2:-14827516 | MS.gene023400:intron |
| TATGGTTGGACAAAGCATAA+TGG | 0.446338 | 4.2:-14838440 | MS.gene023400:CDS |
| AAATGGCGTTCATCTGAACT+TGG | 0.447337 | 4.2:+14829059 | None:intergenic |
| GTTCCTCAGCATCCAACAAA+TGG | 0.451082 | 4.2:-14831030 | MS.gene023400:CDS |
| ACTGAGTTTCATTGTACCAT+TGG | 0.453158 | 4.2:+14830300 | None:intergenic |
| TTCATGCTGCAGATTATTGG+TGG | 0.453266 | 4.2:-14834908 | MS.gene023400:intron |
| GCAGTTTCAAGGTGAGCATA+AGG | 0.456902 | 4.2:-14839520 | MS.gene023400:intron |
| TAAGGAAACTAAACCTGAAA+AGG | 0.458739 | 4.2:-14828973 | MS.gene023400:intron |
| GCAGTGGTTATGGTGGGGAT+TGG | 0.460130 | 4.2:-14838340 | MS.gene023400:CDS |
| TCTAAGTGGAATGAGGACTT+TGG | 0.463553 | 4.2:-14838092 | MS.gene023400:CDS |
| TCTATCTCGGAATTCGTGCC+AGG | 0.464769 | 4.2:-14839464 | MS.gene023400:intron |
| ACCAAGTTTATAAAATCAAA+GGG | 0.466045 | 4.2:-14838368 | MS.gene023400:CDS |
| GCTCCTCAATTCTTTGTACA+TGG | 0.466154 | 4.2:+14827089 | None:intergenic |
| ACTCCACAATCTTTGATGGC+TGG | 0.476566 | 4.2:-14838539 | MS.gene023400:CDS |
| GGAATGATTCTCCCCATGAA+TGG | 0.477220 | 4.2:+14827784 | None:intergenic |
| AACAGATGAGCAGTTACTAT+TGG | 0.480973 | 4.2:-14830202 | MS.gene023400:CDS |
| ATGGTGGGGATTGGGCAGTT+CGG | 0.481492 | 4.2:-14838331 | MS.gene023400:CDS |
| TGAGGAAAACCTTGCATCAC+AGG | 0.481579 | 4.2:-14835693 | MS.gene023400:intron |
| AGAATCCGTTTCTGTTGGTA+AGG | 0.490514 | 4.2:-14832790 | MS.gene023400:CDS |
| TTGAGGAACCAACTTCAATA+CGG | 0.493230 | 4.2:+14827828 | None:intergenic |
| ATGGCTGGATTAATGTGGAT+TGG | 0.494273 | 4.2:-14838524 | MS.gene023400:CDS |
| TGATTATGGGCATCAAGTAC+TGG | 0.496436 | 4.2:-14838414 | MS.gene023400:CDS |
| GCCATTTGGATCTTAGATGT+TGG | 0.496786 | 4.2:-14829043 | MS.gene023400:CDS |
| GAATAATGAATTCAATGTGA+TGG | 0.497311 | 4.2:-14830381 | MS.gene023400:CDS |
| CCTTTGGTCGATTAGATGCA+TGG | 0.498690 | 4.2:-14830325 | MS.gene023400:CDS |
| GGAGAATCATCTGATGAGTC+AGG | 0.500788 | 4.2:+14835494 | None:intergenic |
| GAATGATTCTCCCCATGAAT+GGG | 0.500873 | 4.2:+14827785 | None:intergenic |
| AAATTAACATAACCAATTTG+AGG | 0.501022 | 4.2:+14827811 | None:intergenic |
| GGAAAGCAGTGGTTATGGTG+GGG | 0.501090 | 4.2:-14838345 | MS.gene023400:CDS |
| AAAGATCATGGACCTTCCTC+AGG | 0.501146 | 4.2:-14839637 | None:intergenic |
| TACCAAGTTTATAAAATCAA+AGG | 0.501485 | 4.2:-14838369 | MS.gene023400:CDS |
| ATTCAAGGGATCATGGATCC+TGG | 0.504018 | 4.2:-14827509 | MS.gene023400:intron |
| GGAAGCTTATTAGGTGGCAT+TGG | 0.505261 | 4.2:-14832759 | MS.gene023400:CDS |
| TTCTGGGAGCTGAAGCACTA+AGG | 0.505458 | 4.2:-14831160 | MS.gene023400:intron |
| CCAAAACTTCCCGGACAAGC+TGG | 0.508137 | 4.2:+14827857 | None:intergenic |
| CAATTTGTCTGATCTTGTTG+AGG | 0.509858 | 4.2:-14835711 | MS.gene023400:CDS |
| GGGAAAGCAGTGGTTATGGT+GGG | 0.513543 | 4.2:-14838346 | MS.gene023400:CDS |
| TGTGACTCGCCAGCTTGTCC+GGG | 0.516195 | 4.2:-14827866 | MS.gene023400:CDS |
| ACAGCTGTGTAAAGCTCGGC+AGG | 0.518563 | 4.2:+14831532 | None:intergenic |
| TGTGTTGTATTTCATGTACA+AGG | 0.521565 | 4.2:+14827296 | None:intergenic |
| TCTGGCTCTCGAACAGACAT+TGG | 0.525795 | 4.2:-14837969 | MS.gene023400:CDS |
| ATGCCTTAAGTGCTTATGGT+TGG | 0.527145 | 4.2:-14838454 | MS.gene023400:CDS |
| ATGCACATTAAGCAGGCGTT+GGG | 0.528023 | 4.2:-14831261 | MS.gene023400:intron |
| TTTCCATTTGTTGGATGCTG+AGG | 0.531081 | 4.2:+14831027 | None:intergenic |
| AGCAGCCTTACCAACAGAAA+CGG | 0.532526 | 4.2:+14832785 | None:intergenic |
| GATATATACCTTCAGAGTAA+TGG | 0.533943 | 4.2:+14827202 | None:intergenic |
| GGAGAGGCCCGTATTGAAGT+TGG | 0.536080 | 4.2:-14827836 | MS.gene023400:CDS |
| CCAGACGCTGACCTCTGGAT+TGG | 0.538402 | 4.2:-14829105 | MS.gene023400:intron |
| CTTGAGGCATGTCTGCAGAC+AGG | 0.538488 | 4.2:-14838480 | MS.gene023400:CDS |
| ATAGTAAAATCTTACAGTAA+GGG | 0.540673 | 4.2:+14832698 | None:intergenic |
| ATACCACGAGAGCAAATTCT+GGG | 0.540867 | 4.2:-14831176 | MS.gene023400:CDS |
| GATCTGAAACTGCATTACTC+TGG | 0.543079 | 4.2:-14835755 | MS.gene023400:CDS |
| ATTTGATGAACATTGATGGA+TGG | 0.544901 | 4.2:-14831199 | MS.gene023400:CDS |
| ATGTGGATTGGTGTGAAGGA+TGG | 0.545913 | 4.2:-14838512 | MS.gene023400:CDS |
| CTCGAACAGACATTGGAGAC+TGG | 0.548273 | 4.2:-14837962 | MS.gene023400:CDS |
| TATCGTCCTCATCTCTATCT+CGG | 0.550443 | 4.2:-14839477 | MS.gene023400:CDS |
| AAACCATGTACAAAGAATTG+AGG | 0.551218 | 4.2:-14827092 | MS.gene023400:CDS |
| GGTGGTAATGTTCTTGATGT+AGG | 0.552266 | 4.2:-14838032 | MS.gene023400:CDS |
| CAGTTACTATTGGCGTGGAC+GGG | 0.554072 | 4.2:-14830192 | MS.gene023400:CDS |
| GATTCAGAATCCGTTTCTGT+TGG | 0.555863 | 4.2:-14832795 | MS.gene023400:CDS |
| TTCTATTTGGCTGATGAAGG+TGG | 0.556162 | 4.2:-14838050 | MS.gene023400:CDS |
| GCTCCCAGAATTTGCTCTCG+TGG | 0.556731 | 4.2:+14831173 | None:intergenic |
| GCAGCTACATTTAAAGTCTA+CGG | 0.559690 | 4.2:-14837940 | MS.gene023400:intron |
| CCCAACATCTAAGATCCAAA+TGG | 0.560922 | 4.2:+14829042 | None:intergenic |
| TGAGGAACCAACTTCAATAC+GGG | 0.562177 | 4.2:+14827829 | None:intergenic |
| GATTAGATGCATGGTTCCAA+TGG | 0.562464 | 4.2:-14830316 | MS.gene023400:CDS |
| GCAGTTACTATTGGCGTGGA+CGG | 0.563372 | 4.2:-14830193 | MS.gene023400:CDS |
| AGTTGATTCTTGCAGAGAGT+GGG | 0.570346 | 4.2:-14827134 | MS.gene023400:intron |
| TGGTACAATGAAACTCAGTC+AGG | 0.571656 | 4.2:-14830296 | MS.gene023400:intron |
| CTTTGATGGCTGGATTAATG+TGG | 0.572681 | 4.2:-14838529 | MS.gene023400:CDS |
| ATTAATGTGGATTGGTGTGA+AGG | 0.572689 | 4.2:-14838516 | MS.gene023400:CDS |
| TCTGTTGGTAAGGCTGCTGT+TGG | 0.582816 | 4.2:-14832780 | MS.gene023400:CDS |
| CATTGGATATCATTGGACAC+TGG | 0.583078 | 4.2:-14831226 | MS.gene023400:CDS |
| AACACAATATCTGTGGTGAA+AGG | 0.584192 | 4.2:+14834881 | None:intergenic |
| TACGTTCTCTTGCCAAAACA+AGG | 0.584541 | 4.2:-14827432 | MS.gene023400:intron |
| GCTGAGGAACATACTCCTCT+GGG | 0.586239 | 4.2:+14831043 | None:intergenic |
| AAATGGAAAGAATTGAAAGC+AGG | 0.586969 | 4.2:-14827898 | MS.gene023400:CDS |
| GGTCCAACCCCAGGTCTAAG+TGG | 0.590067 | 4.2:-14838106 | MS.gene023400:intron |
| AGCCTATTATGGACTGACTA+CGG | 0.592579 | 4.2:-14827457 | MS.gene023400:CDS |
| AACTTGGGTGAGAAGCTCGT+GGG | 0.595642 | 4.2:+14829075 | None:intergenic |
| AATCCAGCCATCAAAGATTG+TGG | 0.600052 | 4.2:+14838536 | None:intergenic |
| CTTGGAAAGGTTGATCGACA+TGG | 0.601530 | 4.2:+14831508 | None:intergenic |
| CATAAGGAAAGTTTGTATTG+GGG | 0.603784 | 4.2:-14839504 | MS.gene023400:CDS |
| GCTGTTGGAAGCTTATTAGG+TGG | 0.604166 | 4.2:-14832765 | MS.gene023400:CDS |
| GCACTCCACCATTACTCTGA+AGG | 0.604977 | 4.2:-14827210 | MS.gene023400:intron |
| TGGTACAGCTGTGTAAAGCT+CGG | 0.606072 | 4.2:+14831528 | None:intergenic |
| CCTAGCTTACCTGTGATGCA+AGG | 0.606502 | 4.2:+14835684 | None:intergenic |
| TCAGACAAATTGTGAAAGTG+AGG | 0.606527 | 4.2:+14835722 | None:intergenic |
| ATATACCTTCAGAGTAATGG+TGG | 0.607960 | 4.2:+14827205 | None:intergenic |
| CCCCAGGTCTAAGTGGAATG+AGG | 0.608273 | 4.2:-14838099 | MS.gene023400:intron |
| GGTTGAAGTTGACCTGAGGA+AGG | 0.611109 | 4.2:+14839625 | None:intergenic |
| GAACTTGGGTGAGAAGCTCG+TGG | 0.611848 | 4.2:+14829074 | None:intergenic |
| GAAATACAACACAGAACATG+AGG | 0.612707 | 4.2:-14827286 | MS.gene023400:CDS |
| AACACTTCAATTGAATCCCC+AGG | 0.612855 | 4.2:-14830159 | MS.gene023400:intron |
| TTAATTTCTTCCCATTCATG+GGG | 0.620878 | 4.2:-14827795 | MS.gene023400:CDS |
| AATGGCGTTCATCTGAACTT+GGG | 0.622487 | 4.2:+14829060 | None:intergenic |
| ATGAGCAGTTACTATTGGCG+TGG | 0.635286 | 4.2:-14830197 | MS.gene023400:CDS |
| TGTCGATCAACCTTTCCAAG+AGG | 0.650007 | 4.2:-14831505 | MS.gene023400:CDS |
| CATCAAGTACTGGTTGACCA+TGG | 0.651540 | 4.2:-14838404 | MS.gene023400:CDS |
| GAGGCATGTCTGCAGACAGG+AGG | 0.657209 | 4.2:-14838477 | MS.gene023400:CDS |
| CAAGTTTATAAAATCAAAGG+GGG | 0.658269 | 4.2:-14838366 | MS.gene023400:CDS |
| AGAGATAAACACAATATCTG+TGG | 0.662672 | 4.2:+14834874 | None:intergenic |
| CCATGCATCTAATCGACCAA+AGG | 0.663193 | 4.2:+14830325 | None:intergenic |
| AGATCTGGAGATATTGAACA+AGG | 0.664713 | 4.2:-14828850 | MS.gene023400:intron |
| CCAAGTTTATAAAATCAAAG+GGG | 0.669326 | 4.2:-14838367 | MS.gene023400:CDS |
| TGGTAGTCAAGATCATGCCA+TGG | 0.676038 | 4.2:+14838387 | None:intergenic |
| TGGGTAATCATCCAATCCAG+AGG | 0.683806 | 4.2:+14829094 | None:intergenic |
| CGAATTCCGAGATAGAGATG+AGG | 0.685066 | 4.2:+14839471 | None:intergenic |
| AGGATGGTAGTAATCACTTG+AGG | 0.685926 | 4.2:-14838496 | MS.gene023400:CDS |
| CATGAGGCTCCATATTGGAG+AGG | 0.689114 | 4.2:-14827270 | MS.gene023400:CDS |
| TATTTGCAGTAGGATCCCAG+AGG | 0.797138 | 4.2:-14831058 | MS.gene023400:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 14827078 | 14839652 | 14827078 | ID=MS.gene023400 |
| chr4.2 | mRNA | 14827078 | 14839652 | 14827078 | ID=MS.gene023400.t1;Parent=MS.gene023400 |
| chr4.2 | exon | 14839638 | 14839652 | 14839638 | ID=MS.gene023400.t1.exon1;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14839638 | 14839652 | 14839638 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14839465 | 14839538 | 14839465 | ID=MS.gene023400.t1.exon2;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14839465 | 14839538 | 14839465 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14838311 | 14838562 | 14838311 | ID=MS.gene023400.t1.exon3;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14838311 | 14838562 | 14838311 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14837941 | 14838115 | 14837941 | ID=MS.gene023400.t1.exon4;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14837941 | 14838115 | 14837941 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14835694 | 14835780 | 14835694 | ID=MS.gene023400.t1.exon5;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14835694 | 14835780 | 14835694 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14835475 | 14835543 | 14835475 | ID=MS.gene023400.t1.exon6;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14835475 | 14835543 | 14835475 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14834822 | 14834918 | 14834822 | ID=MS.gene023400.t1.exon7;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14834822 | 14834918 | 14834822 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14832947 | 14833029 | 14832947 | ID=MS.gene023400.t1.exon8;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14832947 | 14833029 | 14832947 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14832713 | 14832820 | 14832713 | ID=MS.gene023400.t1.exon9;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14832713 | 14832820 | 14832713 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14831466 | 14831587 | 14831466 | ID=MS.gene023400.t1.exon10;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14831466 | 14831587 | 14831466 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14831161 | 14831268 | 14831161 | ID=MS.gene023400.t1.exon11;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14831161 | 14831268 | 14831161 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14830998 | 14831071 | 14830998 | ID=MS.gene023400.t1.exon12;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14830998 | 14831071 | 14830998 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14830297 | 14830422 | 14830297 | ID=MS.gene023400.t1.exon13;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14830297 | 14830422 | 14830297 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14830160 | 14830227 | 14830160 | ID=MS.gene023400.t1.exon14;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14830160 | 14830227 | 14830160 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14828974 | 14829123 | 14828974 | ID=MS.gene023400.t1.exon15;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14828974 | 14829123 | 14828974 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14828851 | 14828901 | 14828851 | ID=MS.gene023400.t1.exon16;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14828851 | 14828901 | 14828851 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14828050 | 14828106 | 14828050 | ID=MS.gene023400.t1.exon17;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14828050 | 14828106 | 14828050 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14827780 | 14827929 | 14827780 | ID=MS.gene023400.t1.exon18;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14827780 | 14827929 | 14827780 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14827433 | 14827524 | 14827433 | ID=MS.gene023400.t1.exon19;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14827433 | 14827524 | 14827433 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14827211 | 14827320 | 14827211 | ID=MS.gene023400.t1.exon20;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14827211 | 14827320 | 14827211 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| chr4.2 | exon | 14827078 | 14827141 | 14827078 | ID=MS.gene023400.t1.exon21;Parent=MS.gene023400.t1 |
| chr4.2 | CDS | 14827078 | 14827141 | 14827078 | ID=cds.MS.gene023400.t1;Parent=MS.gene023400.t1 |
| Gene Sequence |
| Protein sequence |
