Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09201.t1 | XP_013446555.1 | 97.5 | 849 | 21 | 0 | 1 | 849 | 1 | 849 | 0.00E+00 | 1708.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09201.t1 | F4HTM3 | 63.9 | 854 | 295 | 7 | 1 | 846 | 1 | 849 | 0.0e+00 | 1135.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09201.t1 | A0A072TT32 | 97.5 | 849 | 21 | 0 | 1 | 849 | 1 | 849 | 0.0e+00 | 1708.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051067 | MS.gene09201 | 0.829153 | 6.04E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene09201 | 0.812393 | 4.34E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene09201 | 0.81622 | 6.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09201 | MS.gene023400 | PPI |
| MS.gene09201 | MS.gene09043 | PPI |
| MS.gene09201 | MS.gene09042 | PPI |
| MS.gene09201 | MS.gene09198 | PPI |
| MS.gene09201 | MS.gene023402 | PPI |
| MS.gene09201 | MS.gene08447 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09201.t1 | MTR_8g080360 | 97.527 | 849 | 21 | 0 | 1 | 849 | 1 | 849 | 0.0 | 1720 |
| MS.gene09201.t1 | MTR_8g080290 | 78.353 | 850 | 174 | 3 | 1 | 849 | 1 | 841 | 0.0 | 1375 |
| MS.gene09201.t1 | MTR_8g080290 | 81.148 | 732 | 133 | 1 | 118 | 849 | 38 | 764 | 0.0 | 1260 |
| MS.gene09201.t1 | MTR_8g080290 | 78.284 | 746 | 152 | 3 | 1 | 745 | 1 | 737 | 0.0 | 1196 |
| MS.gene09201.t1 | MTR_8g080290 | 76.902 | 723 | 157 | 3 | 1 | 722 | 1 | 714 | 0.0 | 1138 |
| MS.gene09201.t1 | MTR_8g080290 | 80.744 | 618 | 114 | 1 | 232 | 849 | 14 | 626 | 0.0 | 1059 |
| MS.gene09201.t1 | MTR_8g080290 | 77.586 | 580 | 125 | 2 | 1 | 579 | 1 | 576 | 0.0 | 916 |
| MS.gene09201.t1 | MTR_8g080290 | 77.682 | 578 | 124 | 2 | 1 | 577 | 1 | 574 | 0.0 | 915 |
| MS.gene09201.t1 | MTR_8g080290 | 74.627 | 603 | 125 | 3 | 1 | 579 | 1 | 599 | 0.0 | 903 |
| MS.gene09201.t1 | MTR_8g080290 | 77.617 | 554 | 119 | 2 | 1 | 553 | 1 | 550 | 0.0 | 870 |
| MS.gene09201.t1 | MTR_8g080290 | 78.363 | 513 | 106 | 2 | 1 | 512 | 1 | 509 | 0.0 | 814 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09201.t1 | AT1G67490 | 63.775 | 853 | 298 | 6 | 1 | 846 | 1 | 849 | 0.0 | 1129 |
| MS.gene09201.t1 | AT1G24320 | 60.233 | 772 | 304 | 2 | 76 | 846 | 17 | 786 | 0.0 | 999 |
| MS.gene09201.t1 | AT1G24320 | 58.420 | 772 | 287 | 4 | 76 | 846 | 17 | 755 | 0.0 | 952 |
| MS.gene09201.t1 | AT1G67490 | 65.030 | 672 | 233 | 2 | 176 | 846 | 95 | 765 | 0.0 | 923 |
| MS.gene09201.t1 | AT1G67490 | 46.457 | 127 | 60 | 4 | 1 | 121 | 1 | 125 | 5.02e-22 | 102 |
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGGTGCTTACTTTGATTT+TGG | 0.126160 | 4.1:-15292992 | MS.gene09201:CDS |
| AAGCATAATGGGCGTGATTA+TGG | 0.169937 | 4.1:-15300491 | MS.gene09201:CDS |
| TCTAAGTGGAATGAAGAATT+TGG | 0.191114 | 4.1:-15300172 | MS.gene09201:CDS |
| CATGCTAGGTTCAACTAAAA+TGG | 0.226231 | 4.1:-15292839 | MS.gene09201:intron |
| AACTTCATGGTGCAGATTAT+TGG | 0.230441 | 4.1:-15297318 | MS.gene09201:intron |
| AATTGAGAAGCAATTTAATT+AGG | 0.251118 | 4.1:-15292176 | MS.gene09201:intron |
| CTAATATCAGGAACTGATTC+TGG | 0.255810 | 4.1:-15297267 | MS.gene09201:CDS |
| TCTTTCCAAGAGGATTTCTA+TGG | 0.258921 | 4.1:-15296077 | MS.gene09201:CDS |
| GCTGCTATTGGAAGCTTATT+AGG | 0.260592 | 4.1:-15296701 | MS.gene09201:CDS |
| TTTCAAATAACAGCCTCTTA+TGG | 0.264048 | 4.1:-15292538 | MS.gene09201:CDS |
| TTCTTTATATTTCAGTTCAT+TGG | 0.273350 | 4.1:+15296993 | None:intergenic |
| GATCTGAAAGTGCATTATTC+TGG | 0.275856 | 4.1:-15298414 | MS.gene09201:CDS |
| AGTGATGTCCAACCCGTAAA+TGG | 0.275954 | 4.1:+15291984 | None:intergenic |
| GCATAAGGAGAGTTTGTATT+GGG | 0.295563 | 4.1:-15300971 | MS.gene09201:CDS |
| CATTTAGGGATCATGGATTC+TGG | 0.296093 | 4.1:-15292579 | MS.gene09201:intron |
| GGCGGCATCGGTTACTTCTA+TGG | 0.300623 | 4.1:-15296680 | MS.gene09201:CDS |
| CAATTCTGTGTATATAGCTT+TGG | 0.304551 | 4.1:+15292194 | None:intergenic |
| GAGCGCATCCATAGTCTTAC+AGG | 0.314982 | 4.1:-15297228 | MS.gene09201:intron |
| TGTTAGTCTGTTCCCATTCA+TGG | 0.316927 | 4.1:-15292721 | MS.gene09201:CDS |
| CGGCCTTCCTTCACCGGCAT+CGG | 0.321994 | 4.1:+15301293 | None:intergenic |
| AATGAAATGATGCAGAATTA+TGG | 0.324437 | 4.1:-15293882 | MS.gene09201:intron |
| ATGCTTCTCGTCAGCTTGTC+CGG | 0.328392 | 4.1:-15292791 | MS.gene09201:CDS |
| CTAGGTTGTAGACCTTGTTT+TGG | 0.335750 | 4.1:+15292490 | None:intergenic |
| AGCGGCAGTTCTTCCGCTTC+CGG | 0.337392 | 4.1:+15301344 | None:intergenic |
| GCTTCCAATAGCAGCTTTAC+CGG | 0.337721 | 4.1:+15296709 | None:intergenic |
| CAAATGGGACCTCTCCAATA+TGG | 0.338192 | 4.1:+15292356 | None:intergenic |
| AAAAGGAGCACGTCCATTTA+CGG | 0.345194 | 4.1:-15291997 | MS.gene09201:CDS |
| TTCTCGGGGCTGAAGCATTA+AGG | 0.351385 | 4.1:-15295761 | MS.gene09201:intron |
| GTAATTCATGTTTATCCAAA+TGG | 0.351539 | 4.1:+15292340 | None:intergenic |
| TCCTTCACCGGCATCGGGTT+CGG | 0.351713 | 4.1:+15301299 | None:intergenic |
| AGCATAATGGGCGTGATTAT+GGG | 0.360075 | 4.1:-15300490 | MS.gene09201:CDS |
| GAGCAGTACGATCAGATTAA+AGG | 0.363593 | 4.1:-15292026 | MS.gene09201:CDS |
| GAGGATGACTTAAGTACTTA+TGG | 0.363795 | 4.1:-15300521 | MS.gene09201:CDS |
| CGTATTTCGTTGGATATCAT+TGG | 0.366288 | 4.1:-15295834 | MS.gene09201:CDS |
| GCTTTGGCTTTGTTCCGATA+TGG | 0.366506 | 4.1:+15292210 | None:intergenic |
| CCTTTGCGGCGGTTAAATTT+CGG | 0.369400 | 4.1:+15301273 | None:intergenic |
| CAGGACCCCACAATCTTTGA+TGG | 0.370740 | 4.1:-15300606 | MS.gene09201:CDS |
| CTGATCGAGGTCCATGATCT+TGG | 0.373548 | 4.1:+15301083 | None:intergenic |
| AAGGCTGATGACAGTGGTTA+TGG | 0.376069 | 4.1:-15300413 | MS.gene09201:CDS |
| GTTGGAGGATTTCCATTTGT+TGG | 0.377253 | 4.1:+15295621 | None:intergenic |
| ACTGTCTCATTTAGGGATCA+TGG | 0.381195 | 4.1:-15292586 | MS.gene09201:intron |
| TGCTGAGGAACAAATTCATC+TGG | 0.382600 | 4.1:+15295645 | None:intergenic |
| CTGAGCATGATCCTCCATAT+TGG | 0.385445 | 4.1:-15292370 | MS.gene09201:CDS |
| AGCCTCTTATGGACTGACTA+TGG | 0.386485 | 4.1:-15292527 | MS.gene09201:CDS |
| CATATTGGAGAGGTCCCATT+TGG | 0.388396 | 4.1:-15292355 | MS.gene09201:CDS |
| ACTAAAGTAACTTACATTAA+GGG | 0.390291 | 4.1:+15296631 | None:intergenic |
| CTAAGTGGAATGAAGAATTT+GGG | 0.391676 | 4.1:-15300171 | MS.gene09201:CDS |
| CTGGCTCTCGATCAGACATT+GGG | 0.393178 | 4.1:-15300048 | MS.gene09201:CDS |
| GTTAGTCTGTTCCCATTCAT+GGG | 0.400749 | 4.1:-15292720 | MS.gene09201:CDS |
| CGTATTTGCTTCTTCCTTTG+CGG | 0.400920 | 4.1:+15301259 | None:intergenic |
| GAGAGTTCTTTACTTGCATC+TGG | 0.401082 | 4.1:-15300067 | MS.gene09201:CDS |
| ATGTTGATTATGTATCATAT+TGG | 0.405233 | 4.1:-15296137 | MS.gene09201:CDS |
| ACAGATATTGTACTAATATC+AGG | 0.407910 | 4.1:-15297279 | MS.gene09201:CDS |
| AAAGGAGCACGTCCATTTAC+GGG | 0.417891 | 4.1:-15291996 | MS.gene09201:CDS |
| TTTATCCAACAACTTCTCAA+TGG | 0.419671 | 4.1:+15293986 | None:intergenic |
| TTAGATTTGATGAACGTTGA+TGG | 0.422257 | 4.1:-15295804 | MS.gene09201:CDS |
| ATGATCTTGGGCGCGGGAAG+AGG | 0.424527 | 4.1:+15301096 | None:intergenic |
| GCATTCCATTGAGAAGTTGT+TGG | 0.425110 | 4.1:-15293991 | MS.gene09201:CDS |
| GAAGAGGCCTGTATTAAGAT+TGG | 0.426147 | 4.1:-15292760 | MS.gene09201:CDS |
| GGCCTTCCTTCACCGGCATC+GGG | 0.432102 | 4.1:+15301294 | None:intergenic |
| TAATTCATGTTTATCCAAAT+GGG | 0.433787 | 4.1:+15292341 | None:intergenic |
| GTTCCTCAGCATCCAACAAA+TGG | 0.437876 | 4.1:-15295633 | MS.gene09201:CDS |
| CAGTGGTTATGGAGGGGACT+GGG | 0.443295 | 4.1:-15300402 | MS.gene09201:CDS |
| CCTTTGTTCGATTGGAAGCA+TGG | 0.445256 | 4.1:-15294782 | MS.gene09201:CDS |
| CAGATTAAAGGCAAGGGAAA+AGG | 0.447431 | 4.1:-15292014 | MS.gene09201:CDS |
| AGCAGCTTTACCGGCAGAAA+CGG | 0.448450 | 4.1:+15296718 | None:intergenic |
| AAATTTCGGCCTTCCTTCAC+CGG | 0.450484 | 4.1:+15301287 | None:intergenic |
| TGCTTCTCGTCAGCTTGTCC+GGG | 0.451163 | 4.1:-15292790 | MS.gene09201:CDS |
| TCTGCCGGTAAAGCTGCTAT+TGG | 0.453004 | 4.1:-15296713 | MS.gene09201:CDS |
| TCTTCCCGCGCCCAAGATCA+TGG | 0.454704 | 4.1:-15301094 | MS.gene09201:CDS |
| CGCAAAGGAAGAAGCAAATA+CGG | 0.455599 | 4.1:-15301258 | MS.gene09201:CDS |
| ATGAACATTAATCAGGCGTT+GGG | 0.460197 | 4.1:-15295862 | MS.gene09201:intron |
| ACCCCACAATCTTTGATGGC+TGG | 0.462248 | 4.1:-15300602 | MS.gene09201:CDS |
| TCTATCTCGGAATTCGTGCC+AGG | 0.464769 | 4.1:-15300930 | MS.gene09201:intron |
| ATGCTGACATTGTCGAATAA+CGG | 0.468313 | 4.1:+15301225 | None:intergenic |
| TTGCAGAGAATGGACCATAT+CGG | 0.469182 | 4.1:-15292224 | MS.gene09201:intron |
| AGAGCGCTCCTTTGTTCGAT+TGG | 0.469878 | 4.1:-15294790 | MS.gene09201:CDS |
| TGAACTGAAATATAAAGAAC+AGG | 0.471940 | 4.1:-15296989 | MS.gene09201:CDS |
| AGAGGATTTCTATGGGATGA+AGG | 0.475581 | 4.1:-15296069 | MS.gene09201:CDS |
| GGAATGATTCTCCCCATGAA+TGG | 0.477630 | 4.1:+15292708 | None:intergenic |
| GTCCATAGTCAGTCCATAAG+AGG | 0.478491 | 4.1:+15292525 | None:intergenic |
| GCACTCCACCATTATTCAAA+AGG | 0.478741 | 4.1:-15292305 | MS.gene09201:intron |
| CAAGATCATGGACCTCGATC+AGG | 0.478980 | 4.1:-15301082 | MS.gene09201:intron |
| AGATGTAAGTAGAGAAAACT+TGG | 0.479345 | 4.1:-15300098 | MS.gene09201:CDS |
| TACCACGTGAACAAATTCTC+GGG | 0.480490 | 4.1:-15295776 | MS.gene09201:CDS |
| CCGTTAGAAATGACCGGAAG+CGG | 0.480542 | 4.1:-15301357 | None:intergenic |
| TGATCGAGGTCCATGATCTT+GGG | 0.482546 | 4.1:+15301084 | None:intergenic |
| ATCGAACAAAGGAGCGCTCT+AGG | 0.483874 | 4.1:+15294793 | None:intergenic |
| AGTGTTGCGTTTCATGTACA+TGG | 0.488468 | 4.1:+15292391 | None:intergenic |
| AGCATAAGGAGAGTTTGTAT+TGG | 0.489664 | 4.1:-15300972 | MS.gene09201:CDS |
| TTGGGATATTCGTATTTCGT+TGG | 0.489807 | 4.1:-15295844 | MS.gene09201:CDS |
| TGAGGAACCAATCTTAATAC+AGG | 0.491235 | 4.1:+15292753 | None:intergenic |
| CGTTGGATATCATTGGTCAC+TGG | 0.492407 | 4.1:-15295827 | MS.gene09201:CDS |
| ATGGCTGGATTAATGTGGAT+TGG | 0.494273 | 4.1:-15300587 | MS.gene09201:CDS |
| TTCATGGTGCAGATTATTGG+TGG | 0.497097 | 4.1:-15297315 | MS.gene09201:intron |
| TTAATCATGGCAGAAGCATA+TGG | 0.497563 | 4.1:-15291954 | MS.gene09201:CDS |
| TCACTGTTGTCGCAGTTTCA+AGG | 0.497693 | 4.1:-15300997 | MS.gene09201:intron |
| CCGAAATTTAACCGCCGCAA+AGG | 0.498325 | 4.1:-15301273 | MS.gene09201:CDS |
| GAATGATTCTCCCCATGAAT+GGG | 0.498618 | 4.1:+15292709 | None:intergenic |
| AACAAATGAGCAGCTACTAC+TGG | 0.499573 | 4.1:-15294633 | MS.gene09201:CDS |
| TGGTTCAATACAACTCAGTC+AGG | 0.504158 | 4.1:-15294753 | MS.gene09201:intron |
| CAATTTGTCTGATCTTGTTG+AGG | 0.509858 | 4.1:-15298370 | MS.gene09201:CDS |
| ATGACTTAAGTACTTATGGT+TGG | 0.510296 | 4.1:-15300517 | MS.gene09201:CDS |
| AAGTGGCGTTCATCTTCACT+TGG | 0.510451 | 4.1:+15294053 | None:intergenic |
| CTCGATCAGACATTGGGGAT+TGG | 0.511552 | 4.1:-15300042 | MS.gene09201:CDS |
| TCTGGCTCTCGATCAGACAT+TGG | 0.511869 | 4.1:-15300049 | MS.gene09201:CDS |
| TGCCGTGGTCAACGAGTACT+TGG | 0.515945 | 4.1:+15300465 | None:intergenic |
| ATCACTTGTAGTATTAATCA+TGG | 0.516772 | 4.1:-15291967 | MS.gene09201:CDS |
| AAATGGAAAGAGATGGAGAC+TGG | 0.521161 | 4.1:-15292822 | MS.gene09201:CDS |
| GCAGTTTCAAGGTGAGCATA+AGG | 0.522494 | 4.1:-15300986 | MS.gene09201:intron |
| TCATCCCATAGAAATCCTCT+TGG | 0.523691 | 4.1:+15296072 | None:intergenic |
| GCCACTTGGATCTTAGATGC+TGG | 0.526504 | 4.1:-15294037 | MS.gene09201:CDS |
| ACTGAGTTGTATTGAACCAT+TGG | 0.527811 | 4.1:+15294757 | None:intergenic |
| ATACCACGTGAACAAATTCT+CGG | 0.530402 | 4.1:-15295777 | MS.gene09201:CDS |
| TTTCCATTTGTTGGATGCTG+AGG | 0.531081 | 4.1:+15295630 | None:intergenic |
| CTTTCCAAGAGGATTTCTAT+GGG | 0.532235 | 4.1:-15296076 | MS.gene09201:CDS |
| GCAGCTACATTTAAAGTCCA+AGG | 0.534105 | 4.1:-15300020 | MS.gene09201:intron |
| GACTCAGAATCCGTTTCTGC+CGG | 0.539126 | 4.1:-15296728 | MS.gene09201:CDS |
| TAGGACATTACCACCTTCAT+CGG | 0.539199 | 4.1:+15300120 | None:intergenic |
| TCCGAACCCGATGCCGGTGA+AGG | 0.540127 | 4.1:-15301300 | MS.gene09201:CDS |
| GTACGTAACTATCAAGAGAC+TGG | 0.540165 | 4.1:-15292059 | MS.gene09201:CDS |
| GGAAGCTTATTAGGCGGCAT+CGG | 0.542443 | 4.1:-15296692 | MS.gene09201:CDS |
| ATTTGATGAACGTTGATGGA+TGG | 0.542797 | 4.1:-15295800 | MS.gene09201:CDS |
| ACAGCTGTATAAAGCTCAGC+AGG | 0.543265 | 4.1:+15296114 | None:intergenic |
| GATTGGAAGCATGGTTCCAA+TGG | 0.545438 | 4.1:-15294773 | MS.gene09201:CDS |
| AGACGAATCTTCTAACGTGT+TGG | 0.545858 | 4.1:-15298172 | MS.gene09201:CDS |
| AACCCGATGCCGGTGAAGGA+AGG | 0.546387 | 4.1:-15301296 | MS.gene09201:CDS |
| CGTCTAACCCCAGGTCTAAG+TGG | 0.546776 | 4.1:-15300186 | MS.gene09201:intron |
| AATCCAGCCATCAAAGATTG+TGG | 0.547945 | 4.1:+15300599 | None:intergenic |
| TCTTCCTCCGAACCCGATGC+CGG | 0.549933 | 4.1:-15301306 | MS.gene09201:CDS |
| TATCGTCCTCATCTCTATCT+CGG | 0.550443 | 4.1:-15300943 | MS.gene09201:CDS |
| GAATAATGAGTTCACTGCAA+AGG | 0.554341 | 4.1:-15294838 | MS.gene09201:CDS |
| TCAACTAAAATGGAAAGAGA+TGG | 0.559447 | 4.1:-15292829 | MS.gene09201:CDS |
| ACAGTGGTTATGGAGGGGAC+TGG | 0.560664 | 4.1:-15300403 | MS.gene09201:CDS |
| TTCTATTTGGCCGATGAAGG+TGG | 0.563608 | 4.1:-15300130 | MS.gene09201:CDS |
| ATCCAGCCATCAAAGATTGT+GGG | 0.564704 | 4.1:+15300600 | None:intergenic |
| TTCACCGGCATCGGGTTCGG+AGG | 0.566237 | 4.1:+15301302 | None:intergenic |
| AGGTCCATGATCTTGGGCGC+GGG | 0.569473 | 4.1:+15301090 | None:intergenic |
| GAGGTCCATGATCTTGGGCG+CGG | 0.570726 | 4.1:+15301089 | None:intergenic |
| GCCCCGAGAATTTGTTCACG+TGG | 0.571440 | 4.1:+15295774 | None:intergenic |
| CTTTGATGGCTGGATTAATG+TGG | 0.572681 | 4.1:-15300592 | MS.gene09201:CDS |
| TAAAGAAACCAGGCCTAGCA+AGG | 0.573688 | 4.1:-15293967 | MS.gene09201:intron |
| AGTACAATATCTGTAGTGAA+AGG | 0.574114 | 4.1:+15297288 | None:intergenic |
| AAGTGAAGATGAACGCCACT+TGG | 0.574784 | 4.1:-15294051 | MS.gene09201:CDS |
| ATGAGCAGCTACTACTGGCA+TGG | 0.577502 | 4.1:-15294628 | MS.gene09201:CDS |
| TCACTTGGGTGCGAAGCACG+TGG | 0.577698 | 4.1:+15294068 | None:intergenic |
| GACGATCCGTTAGAAATGAC+CGG | 0.581585 | 4.1:-15301363 | None:intergenic |
| TACGATCAGATTAAAGGCAA+GGG | 0.581634 | 4.1:-15292020 | MS.gene09201:CDS |
| GTACGATCAGATTAAAGGCA+AGG | 0.583444 | 4.1:-15292021 | MS.gene09201:CDS |
| TACGTTCTCTTGCCAAAACA+AGG | 0.584541 | 4.1:-15292502 | MS.gene09201:intron |
| GCTGATGACAGTGGTTATGG+AGG | 0.586057 | 4.1:-15300410 | MS.gene09201:CDS |
| GAGCACGTCCATTTACGGGT+TGG | 0.587130 | 4.1:-15291992 | MS.gene09201:CDS |
| TTAAGATTGGTTCCTCACAT+TGG | 0.590145 | 4.1:-15292747 | MS.gene09201:CDS |
| CTGATGACAGTGGTTATGGA+GGG | 0.596230 | 4.1:-15300409 | MS.gene09201:CDS |
| GTGGAATGAAGAATTTGGGA+GGG | 0.599051 | 4.1:-15300167 | MS.gene09201:CDS |
| TGGAATGAAGAATTTGGGAG+GGG | 0.602311 | 4.1:-15300166 | MS.gene09201:CDS |
| TCAGACAAATTGTGAAAGTG+AGG | 0.606527 | 4.1:+15298381 | None:intergenic |
| GGAAGAGGCGTAACAGCACG+AGG | 0.607501 | 4.1:+15301111 | None:intergenic |
| CTTGGAAAGAAAGACCGACT+TGG | 0.608880 | 4.1:+15296090 | None:intergenic |
| AGTGGCGTTCATCTTCACTT+GGG | 0.610982 | 4.1:+15294054 | None:intergenic |
| ATGTGGATTGGTGTGAAGGA+CGG | 0.611545 | 4.1:-15300575 | MS.gene09201:CDS |
| GCTGAGGAACAAATTCATCT+GGG | 0.619449 | 4.1:+15295646 | None:intergenic |
| CCATGCTTCCAATCGAACAA+AGG | 0.623110 | 4.1:+15294782 | None:intergenic |
| CACTTGGGTGCGAAGCACGT+GGG | 0.624468 | 4.1:+15294069 | None:intergenic |
| AAATCAAAGGCTGATGACAG+TGG | 0.625273 | 4.1:-15300419 | MS.gene09201:CDS |
| CAGGCCTCTTCGAAACATCC+CGG | 0.626034 | 4.1:+15292772 | None:intergenic |
| AGATCATGAGTTACTGAACC+AGG | 0.626651 | 4.1:-15293838 | MS.gene09201:intron |
| GAAGCGGAAGAACTGCCGCT+CGG | 0.628429 | 4.1:-15301341 | MS.gene09201:CDS |
| TTTCAGTTCATTGGACAGTG+AGG | 0.628639 | 4.1:+15297002 | None:intergenic |
| TGATGACAGTGGTTATGGAG+GGG | 0.631421 | 4.1:-15300408 | MS.gene09201:CDS |
| TGATTCTGGAAGTTCAAGAG+TGG | 0.632788 | 4.1:-15297253 | MS.gene09201:CDS |
| TTTATACAGCTGTACCAAGT+CGG | 0.636809 | 4.1:-15296104 | MS.gene09201:CDS |
| AATGCGTGAATTAAATCCCA+AGG | 0.639348 | 4.1:-15294590 | MS.gene09201:intron |
| ATTAATGTGGATTGGTGTGA+AGG | 0.642346 | 4.1:-15300579 | MS.gene09201:CDS |
| ATTTGCTTCTTCCTTTGCGG+CGG | 0.643590 | 4.1:+15301262 | None:intergenic |
| TCCAGCCATCAAAGATTGTG+GGG | 0.645163 | 4.1:+15300601 | None:intergenic |
| AGTCGGTCTTTCTTTCCAAG+AGG | 0.645169 | 4.1:-15296087 | MS.gene09201:CDS |
| TTGTCCGGGATGTTTCGAAG+AGG | 0.654001 | 4.1:-15292776 | MS.gene09201:CDS |
| TTAGTCTGTTCCCATTCATG+GGG | 0.654303 | 4.1:-15292719 | MS.gene09201:CDS |
| GCTATTGGAAGCTTATTAGG+CGG | 0.654543 | 4.1:-15296698 | MS.gene09201:CDS |
| ATGGGACCTCTCCAATATGG+AGG | 0.660961 | 4.1:+15292359 | None:intergenic |
| CATAAGGAGAGTTTGTATTG+GGG | 0.664455 | 4.1:-15300970 | MS.gene09201:CDS |
| CAGTAGTCAAGATGATGCCG+TGG | 0.665541 | 4.1:+15300450 | None:intergenic |
| AGTTGTTGGATAAAGAAACC+AGG | 0.668969 | 4.1:-15293977 | MS.gene09201:CDS |
| TGGCTCTCGATCAGACATTG+GGG | 0.670107 | 4.1:-15300047 | MS.gene09201:CDS |
| CATGATCCTCCATATTGGAG+AGG | 0.676723 | 4.1:-15292365 | MS.gene09201:CDS |
| AGACTAACATAACCAATGTG+AGG | 0.681050 | 4.1:+15292735 | None:intergenic |
| TGGGTAATCATCTAATCCAG+AGG | 0.682487 | 4.1:+15294088 | None:intergenic |
| AGTGGAATGAAGAATTTGGG+AGG | 0.684032 | 4.1:-15300168 | MS.gene09201:CDS |
| CACCAAGTACTCGTTGACCA+CGG | 0.684927 | 4.1:-15300467 | MS.gene09201:CDS |
| CGAATTCCGAGATAGAGATG+AGG | 0.685066 | 4.1:+15300937 | None:intergenic |
| GTAACAGCACGAGGAAGACG+AGG | 0.686369 | 4.1:+15301120 | None:intergenic |
| ACCACGTGAACAAATTCTCG+GGG | 0.694043 | 4.1:-15295775 | MS.gene09201:CDS |
| AGTTGAAGTTAACCTGATCG+AGG | 0.702632 | 4.1:+15301070 | None:intergenic |
| AGGAAGACGAGGTTCAGCAA+CGG | 0.703556 | 4.1:+15301131 | None:intergenic |
| TCCAGCATCTAAGATCCAAG+TGG | 0.704184 | 4.1:+15294036 | None:intergenic |
| GAGGCATGTTTGTAGACACG+AGG | 0.704448 | 4.1:-15300540 | MS.gene09201:CDS |
| AGGACGGTAGATATCACTTG+AGG | 0.704516 | 4.1:-15300559 | MS.gene09201:CDS |
| AGATCTGACTCTGCTCCGAG+CGG | 0.726113 | 4.1:+15301326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 15291944 | 15301370 | 15291944 | ID=MS.gene09201 |
| chr4.1 | mRNA | 15291944 | 15301370 | 15291944 | ID=MS.gene09201.t1;Parent=MS.gene09201 |
| chr4.1 | exon | 15301083 | 15301370 | 15301083 | ID=MS.gene09201.t1.exon1;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15301083 | 15301370 | 15301083 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15300931 | 15301004 | 15300931 | ID=MS.gene09201.t1.exon2;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15300931 | 15301004 | 15300931 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15300374 | 15300625 | 15300374 | ID=MS.gene09201.t1.exon3;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15300374 | 15300625 | 15300374 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15300021 | 15300195 | 15300021 | ID=MS.gene09201.t1.exon4;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15300021 | 15300195 | 15300021 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15298353 | 15298439 | 15298353 | ID=MS.gene09201.t1.exon5;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15298353 | 15298439 | 15298353 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15298164 | 15298232 | 15298164 | ID=MS.gene09201.t1.exon6;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15298164 | 15298232 | 15298164 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15297229 | 15297325 | 15297229 | ID=MS.gene09201.t1.exon7;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15297229 | 15297325 | 15297229 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15296945 | 15297027 | 15296945 | ID=MS.gene09201.t1.exon8;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15296945 | 15297027 | 15296945 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15296646 | 15296753 | 15296646 | ID=MS.gene09201.t1.exon9;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15296646 | 15296753 | 15296646 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15296048 | 15296169 | 15296048 | ID=MS.gene09201.t1.exon10;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15296048 | 15296169 | 15296048 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15295762 | 15295869 | 15295762 | ID=MS.gene09201.t1.exon11;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15295762 | 15295869 | 15295762 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15295601 | 15295674 | 15295601 | ID=MS.gene09201.t1.exon12;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15295601 | 15295674 | 15295601 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15294754 | 15294879 | 15294754 | ID=MS.gene09201.t1.exon13;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15294754 | 15294879 | 15294754 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15294591 | 15294658 | 15294591 | ID=MS.gene09201.t1.exon14;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15294591 | 15294658 | 15294591 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15293968 | 15294117 | 15293968 | ID=MS.gene09201.t1.exon15;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15293968 | 15294117 | 15293968 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15293839 | 15293889 | 15293839 | ID=MS.gene09201.t1.exon16;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15293839 | 15293889 | 15293839 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15292976 | 15293032 | 15292976 | ID=MS.gene09201.t1.exon17;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15292976 | 15293032 | 15292976 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15292704 | 15292853 | 15292704 | ID=MS.gene09201.t1.exon18;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15292704 | 15292853 | 15292704 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15292503 | 15292594 | 15292503 | ID=MS.gene09201.t1.exon19;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15292503 | 15292594 | 15292503 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15292306 | 15292415 | 15292306 | ID=MS.gene09201.t1.exon20;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15292306 | 15292415 | 15292306 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15292177 | 15292240 | 15292177 | ID=MS.gene09201.t1.exon21;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15292177 | 15292240 | 15292177 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| chr4.1 | exon | 15291944 | 15292088 | 15291944 | ID=MS.gene09201.t1.exon22;Parent=MS.gene09201.t1 |
| chr4.1 | CDS | 15291944 | 15292088 | 15291944 | ID=cds.MS.gene09201.t1;Parent=MS.gene09201.t1 |
| Gene Sequence |
| Protein sequence |
