Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023402.t1 | XP_013446555.1 | 97.8 | 849 | 19 | 0 | 1 | 849 | 1 | 849 | 0.00E+00 | 1714.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023402.t1 | F4HTM3 | 64.1 | 852 | 297 | 6 | 1 | 846 | 1 | 849 | 0.0e+00 | 1138.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023402.t1 | A0A072TT32 | 97.8 | 849 | 19 | 0 | 1 | 849 | 1 | 849 | 0.0e+00 | 1714.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09043 | MS.gene023402 | PPI |
| MS.gene023400 | MS.gene023402 | PPI |
| MS.gene023402 | MS.gene09042 | PPI |
| MS.gene08447 | MS.gene023402 | PPI |
| MS.gene09201 | MS.gene023402 | PPI |
| MS.gene09198 | MS.gene023402 | PPI |
| MS.gene09042 | MS.gene023402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023402.t1 | MTR_8g080360 | 97.762 | 849 | 19 | 0 | 1 | 849 | 1 | 849 | 0.0 | 1724 |
| MS.gene023402.t1 | MTR_8g080290 | 78.471 | 850 | 173 | 3 | 1 | 849 | 1 | 841 | 0.0 | 1376 |
| MS.gene023402.t1 | MTR_8g080290 | 81.284 | 732 | 132 | 1 | 118 | 849 | 38 | 764 | 0.0 | 1261 |
| MS.gene023402.t1 | MTR_8g080290 | 78.418 | 746 | 151 | 3 | 1 | 745 | 1 | 737 | 0.0 | 1197 |
| MS.gene023402.t1 | MTR_8g080290 | 77.040 | 723 | 156 | 3 | 1 | 722 | 1 | 714 | 0.0 | 1140 |
| MS.gene023402.t1 | MTR_8g080290 | 80.744 | 618 | 114 | 1 | 232 | 849 | 14 | 626 | 0.0 | 1058 |
| MS.gene023402.t1 | MTR_8g080290 | 77.759 | 580 | 124 | 2 | 1 | 579 | 1 | 576 | 0.0 | 918 |
| MS.gene023402.t1 | MTR_8g080290 | 77.855 | 578 | 123 | 2 | 1 | 577 | 1 | 574 | 0.0 | 916 |
| MS.gene023402.t1 | MTR_8g080290 | 74.793 | 603 | 124 | 3 | 1 | 579 | 1 | 599 | 0.0 | 905 |
| MS.gene023402.t1 | MTR_8g080290 | 77.798 | 554 | 118 | 2 | 1 | 553 | 1 | 550 | 0.0 | 872 |
| MS.gene023402.t1 | MTR_8g080290 | 78.558 | 513 | 105 | 2 | 1 | 512 | 1 | 509 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023402.t1 | AT1G67490 | 63.892 | 853 | 297 | 6 | 1 | 846 | 1 | 849 | 0.0 | 1129 |
| MS.gene023402.t1 | AT1G24320 | 60.363 | 772 | 303 | 2 | 76 | 846 | 17 | 786 | 0.0 | 999 |
| MS.gene023402.t1 | AT1G24320 | 58.549 | 772 | 286 | 4 | 76 | 846 | 17 | 755 | 0.0 | 952 |
| MS.gene023402.t1 | AT1G67490 | 67.185 | 643 | 210 | 1 | 205 | 846 | 123 | 765 | 0.0 | 920 |
| MS.gene023402.t1 | AT1G67490 | 47.244 | 127 | 59 | 4 | 1 | 121 | 1 | 125 | 2.41e-22 | 103 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTGCTTACTTTGATTT+TGG | 0.121024 | 4.4:-15801705 | MS.gene023402:CDS |
| AAGCATAATGGGCGTGATTA+TGG | 0.169937 | 4.4:-15809195 | MS.gene023402:CDS |
| TCTAAGTGGAATGAAGAATT+TGG | 0.191114 | 4.4:-15808878 | MS.gene023402:CDS |
| CATGCTAGGTTCAACTAAAA+TGG | 0.226231 | 4.4:-15801555 | MS.gene023402:intron |
| AACTTCATGGTGCAGATTAT+TGG | 0.230441 | 4.4:-15806025 | MS.gene023402:intron |
| AATTGAGAAGCAATTTAATT+AGG | 0.251118 | 4.4:-15800892 | MS.gene023402:intron |
| TCTTTCCAAGAGGATTTCTA+TGG | 0.258921 | 4.4:-15804787 | MS.gene023402:CDS |
| GCTGCTATTGGAAGCTTATT+AGG | 0.260592 | 4.4:-15805412 | MS.gene023402:CDS |
| TTTCAAATAACAGCCTCTTA+TGG | 0.264048 | 4.4:-15801254 | MS.gene023402:CDS |
| CTAATATCAGGAACTGATTC+TGG | 0.266719 | 4.4:-15805974 | MS.gene023402:CDS |
| TTCTTTATATTTCAGTTCAT+TGG | 0.273350 | 4.4:+15805700 | None:intergenic |
| GATCTGAAAGTGCATTATTC+TGG | 0.275856 | 4.4:-15807120 | MS.gene023402:CDS |
| AGTGATGTCCAACCCGTAAA+TGG | 0.275954 | 4.4:+15800699 | None:intergenic |
| AATGAAATGATGCAGAATTA+TGG | 0.289807 | 4.4:-15802587 | MS.gene023402:intron |
| GCATAAGGAGAGTTTGTATT+GGG | 0.295563 | 4.4:-15809849 | MS.gene023402:CDS |
| CATTTAGGGATCATGGATTC+TGG | 0.296093 | 4.4:-15801295 | MS.gene023402:intron |
| GGCGGCATCGGTTACTTCTA+TGG | 0.300623 | 4.4:-15805391 | MS.gene023402:CDS |
| CAATTCTGTGTATATAGCTT+TGG | 0.304551 | 4.4:+15800910 | None:intergenic |
| GAGCGCATCCATAGTCTTAC+AGG | 0.314982 | 4.4:-15805935 | MS.gene023402:intron |
| TGTTAGTCTGTTCCCATTCA+TGG | 0.316927 | 4.4:-15801437 | MS.gene023402:CDS |
| CGGCCTTCCTTCACCGGCAT+CGG | 0.321994 | 4.4:+15810171 | None:intergenic |
| ATGCTTCTCGTCAGCTTGTC+CGG | 0.328392 | 4.4:-15801507 | MS.gene023402:CDS |
| CAGGACTCCACAATCTTTGA+TGG | 0.330269 | 4.4:-15809310 | MS.gene023402:CDS |
| CTAGGTTGTAGACCTTGTTT+TGG | 0.335750 | 4.4:+15801206 | None:intergenic |
| AGCGGCAGTTCTTCCGCTTC+CGG | 0.337392 | 4.4:+15810222 | None:intergenic |
| GCTTCCAATAGCAGCTTTAC+CGG | 0.337721 | 4.4:+15805420 | None:intergenic |
| CAAATGGGACCTCTCCAATA+TGG | 0.338192 | 4.4:+15801072 | None:intergenic |
| AAAAGGAGCACGTCCATTTA+CGG | 0.345194 | 4.4:-15800712 | MS.gene023402:CDS |
| TTCTCGGGGCTGAAGCATTA+AGG | 0.351385 | 4.4:-15804471 | MS.gene023402:intron |
| GTAATTCATGTTTATCCAAA+TGG | 0.351539 | 4.4:+15801056 | None:intergenic |
| TCCTTCACCGGCATCGGGTT+CGG | 0.351713 | 4.4:+15810177 | None:intergenic |
| TTGGGATATTCGTATTTCAT+TGG | 0.353549 | 4.4:-15804554 | MS.gene023402:CDS |
| CGTATTTCATTGGATATCAT+TGG | 0.353739 | 4.4:-15804544 | MS.gene023402:CDS |
| AGCATAATGGGCGTGATTAT+GGG | 0.360075 | 4.4:-15809194 | MS.gene023402:CDS |
| GAGCAGTACGATCAGATTAA+AGG | 0.363593 | 4.4:-15800741 | MS.gene023402:CDS |
| GAGGATGACTTAAGTACTTA+TGG | 0.363795 | 4.4:-15809225 | MS.gene023402:CDS |
| GCTTTGGCTTTGCTCCGATA+TGG | 0.366816 | 4.4:+15800926 | None:intergenic |
| CCTCTGCGGCGGTTAAATTT+CGG | 0.369400 | 4.4:+15810151 | None:intergenic |
| AAGGGTGATGACAGTGGTTA+TGG | 0.369554 | 4.4:-15809117 | MS.gene023402:CDS |
| CTGATCGAGGTCCATGATCT+TGG | 0.373548 | 4.4:+15809961 | None:intergenic |
| GTTGGAGGATTTCCATTTGT+TGG | 0.377253 | 4.4:+15804331 | None:intergenic |
| ACTGTCTCATTTAGGGATCA+TGG | 0.381195 | 4.4:-15801302 | MS.gene023402:intron |
| TGCTGAGGAACAAATTCATC+TGG | 0.382600 | 4.4:+15804355 | None:intergenic |
| CTGAGCATGATCCTCCATAT+TGG | 0.385445 | 4.4:-15801086 | MS.gene023402:CDS |
| AGCCTCTTATGGACTGACTA+TGG | 0.386485 | 4.4:-15801243 | MS.gene023402:CDS |
| CATATTGGAGAGGTCCCATT+TGG | 0.388396 | 4.4:-15801071 | MS.gene023402:CDS |
| ACTAAAGTAACTTACATTAA+GGG | 0.390291 | 4.4:+15805342 | None:intergenic |
| CTAAGTGGAATGAAGAATTT+GGG | 0.391676 | 4.4:-15808877 | MS.gene023402:CDS |
| CTGGCTCTCGATCAGACATT+GGG | 0.393178 | 4.4:-15808754 | MS.gene023402:CDS |
| ACAGATATTGTGCTAATATC+AGG | 0.395508 | 4.4:-15805986 | MS.gene023402:CDS |
| GTTAGTCTGTTCCCATTCAT+GGG | 0.400749 | 4.4:-15801436 | MS.gene023402:CDS |
| GAGAGTTCTTTACTTGCATC+TGG | 0.401082 | 4.4:-15808773 | MS.gene023402:CDS |
| ATGTTGATTATGTATCATAT+TGG | 0.405233 | 4.4:-15804847 | MS.gene023402:CDS |
| AAAGGAGCACGTCCATTTAC+GGG | 0.417891 | 4.4:-15800711 | MS.gene023402:CDS |
| TTTATCCAACAACTTCTCAA+TGG | 0.419671 | 4.4:+15802691 | None:intergenic |
| TTAGATTTGATGAACGTTGA+TGG | 0.422257 | 4.4:-15804514 | MS.gene023402:CDS |
| ATGATCTTGGGCGCGGGAAG+AGG | 0.424527 | 4.4:+15809974 | None:intergenic |
| GCATTCCATTGAGAAGTTGT+TGG | 0.425110 | 4.4:-15802696 | MS.gene023402:CDS |
| GAAGAGGCCTGTATTAAGAT+TGG | 0.426147 | 4.4:-15801476 | MS.gene023402:CDS |
| GGCCTTCCTTCACCGGCATC+GGG | 0.432102 | 4.4:+15810172 | None:intergenic |
| TAATTCATGTTTATCCAAAT+GGG | 0.433787 | 4.4:+15801057 | None:intergenic |
| GTTCCTCAGCATCCAACAAA+TGG | 0.437876 | 4.4:-15804343 | MS.gene023402:CDS |
| CAGTGGTTATGGAGGGGACT+GGG | 0.443295 | 4.4:-15809106 | MS.gene023402:CDS |
| CCTTTGTTCGATTGGAAGCA+TGG | 0.445256 | 4.4:-15803489 | MS.gene023402:CDS |
| CAGATTAAAGGCAAGGGAAA+AGG | 0.447431 | 4.4:-15800729 | MS.gene023402:CDS |
| AGCAGCTTTACCGGCAGAAA+CGG | 0.448450 | 4.4:+15805429 | None:intergenic |
| AAATTTCGGCCTTCCTTCAC+CGG | 0.450484 | 4.4:+15810165 | None:intergenic |
| TGCTTCTCGTCAGCTTGTCC+GGG | 0.451163 | 4.4:-15801506 | MS.gene023402:CDS |
| TCTGCCGGTAAAGCTGCTAT+TGG | 0.453004 | 4.4:-15805424 | MS.gene023402:CDS |
| TCTTCCCGCGCCCAAGATCA+TGG | 0.454704 | 4.4:-15809972 | MS.gene023402:CDS |
| ATGAACATTAATCAGGCGTT+GGG | 0.460197 | 4.4:-15804572 | MS.gene023402:intron |
| TCTATCTCGGAATTCGTGCC+AGG | 0.464769 | 4.4:-15809808 | MS.gene023402:intron |
| CGCAGAGGAAGAAGCAAATA+CGG | 0.467488 | 4.4:-15810136 | MS.gene023402:CDS |
| ATGCTGACATTGTCGAATAA+CGG | 0.468313 | 4.4:+15810103 | None:intergenic |
| AGAGCGCTCCTTTGTTCGAT+TGG | 0.469878 | 4.4:-15803497 | MS.gene023402:CDS |
| TGAACTGAAATATAAAGAAC+AGG | 0.471940 | 4.4:-15805696 | MS.gene023402:CDS |
| AGAGGATTTCTATGGGATGA+AGG | 0.475581 | 4.4:-15804779 | MS.gene023402:CDS |
| ACTCCACAATCTTTGATGGC+TGG | 0.476566 | 4.4:-15809306 | MS.gene023402:CDS |
| GGAATGATTCTCCCCATGAA+TGG | 0.477630 | 4.4:+15801424 | None:intergenic |
| GTCCATAGTCAGTCCATAAG+AGG | 0.478491 | 4.4:+15801241 | None:intergenic |
| GCACTCCACCATTATTCAAA+AGG | 0.478741 | 4.4:-15801021 | MS.gene023402:intron |
| CAAGATCATGGACCTCGATC+AGG | 0.478980 | 4.4:-15809960 | MS.gene023402:intron |
| AGATGTAAGTAGAGAAAACT+TGG | 0.479345 | 4.4:-15808804 | MS.gene023402:CDS |
| TACCACGTGAACAAATTCTC+GGG | 0.480490 | 4.4:-15804486 | MS.gene023402:CDS |
| CCGTTAGAAATGACCGGAAG+CGG | 0.480542 | 4.4:-15810235 | None:intergenic |
| TGATCGAGGTCCATGATCTT+GGG | 0.482546 | 4.4:+15809962 | None:intergenic |
| ATCGAACAAAGGAGCGCTCT+AGG | 0.483874 | 4.4:+15803500 | None:intergenic |
| AGTGTTGCGTTTCATGTACA+TGG | 0.488468 | 4.4:+15801107 | None:intergenic |
| AGCATAAGGAGAGTTTGTAT+TGG | 0.489664 | 4.4:-15809850 | MS.gene023402:CDS |
| TGAGGAACCAATCTTAATAC+AGG | 0.491235 | 4.4:+15801469 | None:intergenic |
| GGTGATGACAGTGGTTATGG+AGG | 0.492012 | 4.4:-15809114 | MS.gene023402:CDS |
| ATGGCTGGATTAATGTGGAT+TGG | 0.494273 | 4.4:-15809291 | MS.gene023402:CDS |
| TTCATGGTGCAGATTATTGG+TGG | 0.497097 | 4.4:-15806022 | MS.gene023402:intron |
| TTAATCATGGCAGAAGCATA+TGG | 0.497563 | 4.4:-15800669 | MS.gene023402:CDS |
| TCACTGTTGTCGCAGTTTCA+AGG | 0.497693 | 4.4:-15809875 | MS.gene023402:intron |
| GAATGATTCTCCCCATGAAT+GGG | 0.498618 | 4.4:+15801425 | None:intergenic |
| AACAAATGAGCAGCTACTAC+TGG | 0.499573 | 4.4:-15803340 | MS.gene023402:CDS |
| CATTGGATATCATTGGTCAC+TGG | 0.503937 | 4.4:-15804537 | MS.gene023402:CDS |
| TGGTTCAATACAACTCAGTC+AGG | 0.504158 | 4.4:-15803460 | MS.gene023402:intron |
| TTGCAGAGAATGGACCATAT+CGG | 0.505181 | 4.4:-15800940 | MS.gene023402:intron |
| CAATTTGTCTGATCTTGTTG+AGG | 0.509858 | 4.4:-15807076 | MS.gene023402:CDS |
| ATGACTTAAGTACTTATGGT+TGG | 0.510296 | 4.4:-15809221 | MS.gene023402:CDS |
| AAGTGGCGTTCATCTTCACT+TGG | 0.510451 | 4.4:+15802758 | None:intergenic |
| CTCGATCAGACATTGGGGAT+TGG | 0.511552 | 4.4:-15808748 | MS.gene023402:CDS |
| TCTGGCTCTCGATCAGACAT+TGG | 0.511869 | 4.4:-15808755 | MS.gene023402:CDS |
| TGCCGTGGTCAACGAGTACT+TGG | 0.515945 | 4.4:+15809169 | None:intergenic |
| ATCACTTGTAGTATTAATCA+TGG | 0.516772 | 4.4:-15800682 | MS.gene023402:CDS |
| AAATGGAAAGAGATGGAGAC+TGG | 0.521161 | 4.4:-15801538 | MS.gene023402:CDS |
| GCAGTTTCAAGGTGAGCATA+AGG | 0.522494 | 4.4:-15809864 | MS.gene023402:intron |
| TCATCCCATAGAAATCCTCT+TGG | 0.523691 | 4.4:+15804782 | None:intergenic |
| TTGGATAAAGAAACCAGGCC+TGG | 0.525691 | 4.4:-15802677 | MS.gene023402:CDS |
| GCCACTTGGATCTTAGATGC+TGG | 0.526504 | 4.4:-15802742 | MS.gene023402:CDS |
| ACTGAGTTGTATTGAACCAT+TGG | 0.527811 | 4.4:+15803464 | None:intergenic |
| ATACCACGTGAACAAATTCT+CGG | 0.530402 | 4.4:-15804487 | MS.gene023402:CDS |
| TTTCCATTTGTTGGATGCTG+AGG | 0.531081 | 4.4:+15804340 | None:intergenic |
| CTTTCCAAGAGGATTTCTAT+GGG | 0.532235 | 4.4:-15804786 | MS.gene023402:CDS |
| GCAGCTACATTTAAAGTCCA+AGG | 0.534105 | 4.4:-15808726 | MS.gene023402:intron |
| GACTCAGAATCCGTTTCTGC+CGG | 0.539126 | 4.4:-15805439 | MS.gene023402:CDS |
| TAGGACATTACCACCTTCAT+CGG | 0.539199 | 4.4:+15808826 | None:intergenic |
| TCCGAACCCGATGCCGGTGA+AGG | 0.540127 | 4.4:-15810178 | MS.gene023402:CDS |
| GTACGTAACTATCAAGAGAC+TGG | 0.540165 | 4.4:-15800774 | MS.gene023402:CDS |
| GGAAGCTTATTAGGCGGCAT+CGG | 0.542443 | 4.4:-15805403 | MS.gene023402:CDS |
| ATTTGATGAACGTTGATGGA+TGG | 0.542797 | 4.4:-15804510 | MS.gene023402:CDS |
| ACAGCTGTATAAAGCTCAGC+AGG | 0.543265 | 4.4:+15804824 | None:intergenic |
| CATCTAACCCCAGGTCTAAG+TGG | 0.544508 | 4.4:-15808892 | MS.gene023402:intron |
| GATTGGAAGCATGGTTCCAA+TGG | 0.545438 | 4.4:-15803480 | MS.gene023402:CDS |
| AGACGAATCTTCTAACGTGT+TGG | 0.545858 | 4.4:-15806878 | MS.gene023402:CDS |
| AACCCGATGCCGGTGAAGGA+AGG | 0.546387 | 4.4:-15810174 | MS.gene023402:CDS |
| TCTTCCTCCGAACCCGATGC+CGG | 0.549933 | 4.4:-15810184 | MS.gene023402:CDS |
| TATCGTCCTCATCTCTATCT+CGG | 0.550443 | 4.4:-15809821 | MS.gene023402:CDS |
| GAATAATGAGTTCACTGCAA+AGG | 0.554341 | 4.4:-15803545 | MS.gene023402:CDS |
| TCAACTAAAATGGAAAGAGA+TGG | 0.559447 | 4.4:-15801545 | MS.gene023402:CDS |
| ACAGTGGTTATGGAGGGGAC+TGG | 0.560664 | 4.4:-15809107 | MS.gene023402:CDS |
| TTCTATTTGGCCGATGAAGG+TGG | 0.563608 | 4.4:-15808836 | MS.gene023402:CDS |
| TAAAGAAACCAGGCCTGGCA+AGG | 0.565874 | 4.4:-15802672 | MS.gene023402:intron |
| TTCACCGGCATCGGGTTCGG+AGG | 0.566237 | 4.4:+15810180 | None:intergenic |
| AGGTCCATGATCTTGGGCGC+GGG | 0.569473 | 4.4:+15809968 | None:intergenic |
| GAGGTCCATGATCTTGGGCG+CGG | 0.570726 | 4.4:+15809967 | None:intergenic |
| GCCCCGAGAATTTGTTCACG+TGG | 0.571440 | 4.4:+15804484 | None:intergenic |
| CTTTGATGGCTGGATTAATG+TGG | 0.572681 | 4.4:-15809296 | MS.gene023402:CDS |
| AAGTGAAGATGAACGCCACT+TGG | 0.574784 | 4.4:-15802756 | MS.gene023402:CDS |
| ATGAGCAGCTACTACTGGCA+TGG | 0.577502 | 4.4:-15803335 | MS.gene023402:CDS |
| TCACTTGGGTGCGAAGCACG+TGG | 0.577698 | 4.4:+15802773 | None:intergenic |
| AGCACAATATCTGTAGTGAA+AGG | 0.578409 | 4.4:+15805995 | None:intergenic |
| GACGATCCGTTAGAAATGAC+CGG | 0.581585 | 4.4:-15810241 | None:intergenic |
| TACGATCAGATTAAAGGCAA+GGG | 0.581634 | 4.4:-15800735 | MS.gene023402:CDS |
| GTACGATCAGATTAAAGGCA+AGG | 0.583444 | 4.4:-15800736 | MS.gene023402:CDS |
| TACGTTCTCTTGCCAAAACA+AGG | 0.584541 | 4.4:-15801218 | MS.gene023402:intron |
| GAGCACGTCCATTTACGGGT+TGG | 0.587130 | 4.4:-15800707 | MS.gene023402:CDS |
| TTAAGATTGGTTCCTCACAT+TGG | 0.590145 | 4.4:-15801463 | MS.gene023402:CDS |
| GTGGAATGAAGAATTTGGGA+GGG | 0.599051 | 4.4:-15808873 | MS.gene023402:CDS |
| AATCCAGCCATCAAAGATTG+TGG | 0.600052 | 4.4:+15809303 | None:intergenic |
| CCGAAATTTAACCGCCGCAG+AGG | 0.601143 | 4.4:-15810151 | MS.gene023402:CDS |
| TGGAATGAAGAATTTGGGAG+GGG | 0.602311 | 4.4:-15808872 | MS.gene023402:CDS |
| GTGATGACAGTGGTTATGGA+GGG | 0.602918 | 4.4:-15809113 | MS.gene023402:CDS |
| TCAGACAAATTGTGAAAGTG+AGG | 0.606527 | 4.4:+15807087 | None:intergenic |
| CTTGGAAAGAAAGACCGACT+TGG | 0.608880 | 4.4:+15804800 | None:intergenic |
| AGTGGCGTTCATCTTCACTT+GGG | 0.610982 | 4.4:+15802759 | None:intergenic |
| ATGTGGATTGGTGTGAAGGA+CGG | 0.611545 | 4.4:-15809279 | MS.gene023402:CDS |
| GGAAGAGGCGTTACAGCACG+AGG | 0.616801 | 4.4:+15809989 | None:intergenic |
| GCTGAGGAACAAATTCATCT+GGG | 0.619449 | 4.4:+15804356 | None:intergenic |
| CCATGCTTCCAATCGAACAA+AGG | 0.623110 | 4.4:+15803489 | None:intergenic |
| CACTTGGGTGCGAAGCACGT+GGG | 0.624468 | 4.4:+15802774 | None:intergenic |
| CAGGCCTCTTCGAAACATCC+CGG | 0.626034 | 4.4:+15801488 | None:intergenic |
| AGATCATGAGTTACTGAACC+AGG | 0.626651 | 4.4:-15802543 | MS.gene023402:intron |
| GAAGCGGAAGAACTGCCGCT+CGG | 0.628429 | 4.4:-15810219 | MS.gene023402:CDS |
| TGATTCTGGAAGTTCAAGAG+TGG | 0.632788 | 4.4:-15805960 | MS.gene023402:CDS |
| TTTATACAGCTGTACCAAGT+CGG | 0.636809 | 4.4:-15804814 | MS.gene023402:CDS |
| AATGCGTGAATTAAATCCCA+AGG | 0.639348 | 4.4:-15803297 | MS.gene023402:intron |
| ATTAATGTGGATTGGTGTGA+AGG | 0.642346 | 4.4:-15809283 | MS.gene023402:CDS |
| AAATCAAAGGGTGATGACAG+TGG | 0.642593 | 4.4:-15809123 | MS.gene023402:CDS |
| ATTTGCTTCTTCCTCTGCGG+CGG | 0.643871 | 4.4:+15810140 | None:intergenic |
| AGTCGGTCTTTCTTTCCAAG+AGG | 0.645169 | 4.4:-15804797 | MS.gene023402:CDS |
| TTGTCCGGGATGTTTCGAAG+AGG | 0.654001 | 4.4:-15801492 | MS.gene023402:CDS |
| TTAGTCTGTTCCCATTCATG+GGG | 0.654303 | 4.4:-15801435 | MS.gene023402:CDS |
| GCTATTGGAAGCTTATTAGG+CGG | 0.654543 | 4.4:-15805409 | MS.gene023402:CDS |
| TGATGACAGTGGTTATGGAG+GGG | 0.655116 | 4.4:-15809112 | MS.gene023402:CDS |
| ATGGGACCTCTCCAATATGG+AGG | 0.660961 | 4.4:+15801075 | None:intergenic |
| CATAAGGAGAGTTTGTATTG+GGG | 0.664455 | 4.4:-15809848 | MS.gene023402:CDS |
| CAGTAGTCAAGATGATGCCG+TGG | 0.665541 | 4.4:+15809154 | None:intergenic |
| AGTTGTTGGATAAAGAAACC+AGG | 0.668969 | 4.4:-15802682 | MS.gene023402:CDS |
| TGGCTCTCGATCAGACATTG+GGG | 0.670107 | 4.4:-15808753 | MS.gene023402:CDS |
| CGTATTTGCTTCTTCCTCTG+CGG | 0.675869 | 4.4:+15810137 | None:intergenic |
| CATGATCCTCCATATTGGAG+AGG | 0.676723 | 4.4:-15801081 | MS.gene023402:CDS |
| GTTACAGCACGAGGAAGACG+AGG | 0.678912 | 4.4:+15809998 | None:intergenic |
| AGACTAACATAACCAATGTG+AGG | 0.681050 | 4.4:+15801451 | None:intergenic |
| TGGGTAATCATCTAATCCAG+AGG | 0.682487 | 4.4:+15802793 | None:intergenic |
| AGTGGAATGAAGAATTTGGG+AGG | 0.684032 | 4.4:-15808874 | MS.gene023402:CDS |
| CACCAAGTACTCGTTGACCA+CGG | 0.684927 | 4.4:-15809171 | MS.gene023402:CDS |
| CGAATTCCGAGATAGAGATG+AGG | 0.685066 | 4.4:+15809815 | None:intergenic |
| ACCACGTGAACAAATTCTCG+GGG | 0.694043 | 4.4:-15804485 | MS.gene023402:CDS |
| AGTTGAAGTTAACCTGATCG+AGG | 0.702632 | 4.4:+15809948 | None:intergenic |
| AGGAAGACGAGGTTCAGCAA+CGG | 0.703556 | 4.4:+15810009 | None:intergenic |
| TCCAGCATCTAAGATCCAAG+TGG | 0.704184 | 4.4:+15802741 | None:intergenic |
| GAGGCATGTTTGTAGACACG+AGG | 0.704448 | 4.4:-15809244 | MS.gene023402:CDS |
| AGGACGGTAGATATCACTTG+AGG | 0.704516 | 4.4:-15809263 | MS.gene023402:CDS |
| AGATCTGACTCTGCTCCGAG+CGG | 0.726113 | 4.4:+15810204 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 15800659 | 15810248 | 15800659 | ID=MS.gene023402 |
| chr4.4 | mRNA | 15800659 | 15810248 | 15800659 | ID=MS.gene023402.t1;Parent=MS.gene023402 |
| chr4.4 | exon | 15809961 | 15810248 | 15809961 | ID=MS.gene023402.t1.exon1;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15809961 | 15810248 | 15809961 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15809809 | 15809882 | 15809809 | ID=MS.gene023402.t1.exon2;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15809809 | 15809882 | 15809809 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15809078 | 15809329 | 15809078 | ID=MS.gene023402.t1.exon3;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15809078 | 15809329 | 15809078 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15808727 | 15808901 | 15808727 | ID=MS.gene023402.t1.exon4;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15808727 | 15808901 | 15808727 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15807059 | 15807145 | 15807059 | ID=MS.gene023402.t1.exon5;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15807059 | 15807145 | 15807059 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15806870 | 15806938 | 15806870 | ID=MS.gene023402.t1.exon6;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15806870 | 15806938 | 15806870 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15805936 | 15806032 | 15805936 | ID=MS.gene023402.t1.exon7;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15805936 | 15806032 | 15805936 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15805652 | 15805734 | 15805652 | ID=MS.gene023402.t1.exon8;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15805652 | 15805734 | 15805652 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15805357 | 15805464 | 15805357 | ID=MS.gene023402.t1.exon9;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15805357 | 15805464 | 15805357 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15804758 | 15804879 | 15804758 | ID=MS.gene023402.t1.exon10;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15804758 | 15804879 | 15804758 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15804472 | 15804579 | 15804472 | ID=MS.gene023402.t1.exon11;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15804472 | 15804579 | 15804472 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15804311 | 15804384 | 15804311 | ID=MS.gene023402.t1.exon12;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15804311 | 15804384 | 15804311 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15803461 | 15803586 | 15803461 | ID=MS.gene023402.t1.exon13;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15803461 | 15803586 | 15803461 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15803298 | 15803365 | 15803298 | ID=MS.gene023402.t1.exon14;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15803298 | 15803365 | 15803298 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15802673 | 15802822 | 15802673 | ID=MS.gene023402.t1.exon15;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15802673 | 15802822 | 15802673 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15802544 | 15802594 | 15802544 | ID=MS.gene023402.t1.exon16;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15802544 | 15802594 | 15802544 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15801689 | 15801745 | 15801689 | ID=MS.gene023402.t1.exon17;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15801689 | 15801745 | 15801689 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15801420 | 15801569 | 15801420 | ID=MS.gene023402.t1.exon18;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15801420 | 15801569 | 15801420 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15801219 | 15801310 | 15801219 | ID=MS.gene023402.t1.exon19;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15801219 | 15801310 | 15801219 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15801022 | 15801131 | 15801022 | ID=MS.gene023402.t1.exon20;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15801022 | 15801131 | 15801022 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15800893 | 15800956 | 15800893 | ID=MS.gene023402.t1.exon21;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15800893 | 15800956 | 15800893 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| chr4.4 | exon | 15800659 | 15800803 | 15800659 | ID=MS.gene023402.t1.exon22;Parent=MS.gene023402.t1 |
| chr4.4 | CDS | 15800659 | 15800803 | 15800659 | ID=cds.MS.gene023402.t1;Parent=MS.gene023402.t1 |
| Gene Sequence |
| Protein sequence |
