Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09043.t1 | XP_013446541.1 | 90 | 846 | 41 | 2 | 1 | 807 | 1 | 841 | 0.00E+00 | 1546.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09043.t1 | F4HTM3 | 63.6 | 770 | 277 | 2 | 38 | 806 | 84 | 851 | 2.2e-308 | 1059.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09043.t1 | A0A072TUN9 | 90.0 | 846 | 41 | 2 | 1 | 807 | 1 | 841 | 0.0e+00 | 1546.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09043 | MS.gene023402 | PPI |
| MS.gene09043 | MS.gene09042 | PPI |
| MS.gene09201 | MS.gene09043 | PPI |
| MS.gene09198 | MS.gene09043 | PPI |
| MS.gene08447 | MS.gene09043 | PPI |
| MS.gene023400 | MS.gene09043 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09043.t1 | MTR_8g080290 | 91.726 | 846 | 26 | 2 | 1 | 807 | 1 | 841 | 0.0 | 1593 |
| MS.gene09043.t1 | MTR_8g080290 | 95.902 | 732 | 25 | 1 | 76 | 807 | 38 | 764 | 0.0 | 1456 |
| MS.gene09043.t1 | MTR_8g080290 | 90.566 | 742 | 26 | 2 | 1 | 703 | 1 | 737 | 0.0 | 1373 |
| MS.gene09043.t1 | MTR_8g080360 | 76.941 | 850 | 152 | 3 | 1 | 807 | 1 | 849 | 0.0 | 1362 |
| MS.gene09043.t1 | MTR_8g080290 | 89.430 | 719 | 32 | 2 | 1 | 680 | 1 | 714 | 0.0 | 1313 |
| MS.gene09043.t1 | MTR_8g080290 | 96.278 | 618 | 18 | 1 | 190 | 807 | 14 | 626 | 0.0 | 1234 |
| MS.gene09043.t1 | MTR_8g080290 | 89.410 | 576 | 22 | 1 | 1 | 537 | 1 | 576 | 0.0 | 1057 |
| MS.gene09043.t1 | MTR_8g080290 | 89.547 | 574 | 21 | 1 | 1 | 535 | 1 | 574 | 0.0 | 1054 |
| MS.gene09043.t1 | MTR_8g080290 | 85.977 | 599 | 22 | 2 | 1 | 537 | 1 | 599 | 0.0 | 1045 |
| MS.gene09043.t1 | MTR_8g080290 | 88.364 | 550 | 25 | 1 | 1 | 511 | 1 | 550 | 0.0 | 993 |
| MS.gene09043.t1 | MTR_8g080290 | 88.431 | 510 | 20 | 1 | 1 | 471 | 1 | 510 | 0.0 | 921 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09043.t1 | AT1G67490 | 63.554 | 771 | 278 | 2 | 38 | 807 | 84 | 852 | 0.0 | 1052 |
| MS.gene09043.t1 | AT1G24320 | 58.808 | 772 | 313 | 3 | 38 | 807 | 21 | 789 | 0.0 | 978 |
| MS.gene09043.t1 | AT1G24320 | 56.680 | 771 | 300 | 4 | 38 | 807 | 21 | 758 | 0.0 | 932 |
| MS.gene09043.t1 | AT1G67490 | 62.848 | 646 | 239 | 1 | 163 | 807 | 123 | 768 | 0.0 | 868 |
| MS.gene09043.t1 | AT1G67490 | 83.333 | 42 | 7 | 0 | 38 | 79 | 84 | 125 | 2.25e-17 | 87.4 |
Find 187 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGAGCATACTTTGATTT+TGG | 0.139382 | 4.2:-14640601 | MS.gene09043:CDS |
| GCTGCTGTTGGAAGCTTATT+AGG | 0.208927 | 4.2:-14645309 | MS.gene09043:CDS |
| AAGCATAATGGACGTGATTA+TGG | 0.222490 | 4.2:-14650651 | MS.gene09043:CDS |
| TTTCAAATCGCAGCCTATTA+TGG | 0.223778 | 4.2:-14640003 | MS.gene09043:CDS |
| CAAGCTAGGTTCAACTTAAA+TGG | 0.233898 | 4.2:-14640450 | MS.gene09043:intron |
| CCAGCTTGTCCGGGAAGTTT+TGG | 0.237094 | 4.2:-14640392 | MS.gene09043:CDS |
| AATTGAGGAGCAATTTAATT+AGG | 0.244298 | 4.2:-14639612 | MS.gene09043:intron |
| TACTTCATGCTGCAGATTAT+TGG | 0.247768 | 4.2:-14647444 | MS.gene09043:intron |
| CATATTGGAGAGGTACAATT+TGG | 0.259206 | 4.2:-14639795 | MS.gene09043:CDS |
| TTGAAGTTGGTTCCTCAAAT+TGG | 0.266586 | 4.2:-14640358 | MS.gene09043:CDS |
| GTTGATGTCCAACCCGTAAA+TGG | 0.274758 | 4.2:+14639430 | None:intergenic |
| GGTGGCATTGGTTACTTCTA+TGG | 0.288431 | 4.2:-14645288 | MS.gene09043:CDS |
| AATGAAATGATGCAGAATTA+TGG | 0.299969 | 4.2:-14641432 | MS.gene09043:intron |
| CATTGAAGAGTTGTTGAATA+AGG | 0.303329 | 4.2:-14641537 | MS.gene09043:CDS |
| GCATAAGGAAAGTTTGTATT+GGG | 0.307657 | 4.2:-14651724 | MS.gene09043:CDS |
| TGTTAATTTCTTCCCATTCA+TGG | 0.324538 | 4.2:-14640332 | MS.gene09043:CDS |
| CAAATTGTACCTCTCCAATA+TGG | 0.336633 | 4.2:+14639796 | None:intergenic |
| ATGTGACTCGCCAGCTTGTC+CGG | 0.344079 | 4.2:-14640402 | MS.gene09043:CDS |
| CATATTTCATTGGATATCAT+TGG | 0.349159 | 4.2:-14643792 | MS.gene09043:CDS |
| AAGCGCGTCAATAGTCTTAC+AGG | 0.349761 | 4.2:-14647354 | MS.gene09043:intron |
| GGAAGCATATGACATAATTT+AGG | 0.350954 | 4.2:-14639389 | None:intergenic |
| CTTATTCAACAACTCTTCAA+TGG | 0.352319 | 4.2:+14641538 | None:intergenic |
| GACGGTTAGAAGAAGCTTCT+TGG | 0.354552 | 4.2:+14652036 | None:intergenic |
| AAAAGGAGCACATCCATTTA+CGG | 0.360143 | 4.2:-14639443 | MS.gene09043:CDS |
| TTGGCGGAGAGGATCGGCTT+CGG | 0.362400 | 4.2:+14652055 | None:intergenic |
| GAGGATGCCTTAAGTGCTTA+TGG | 0.362574 | 4.2:-14650681 | MS.gene09043:CDS |
| GAGAGTTCGTTACTTGCATT+TGG | 0.365808 | 4.2:-14650210 | MS.gene09043:CDS |
| GATACCACGAGAACAAATTC+TGG | 0.365935 | 4.2:-14643736 | MS.gene09043:CDS |
| CTGTTCCTGGAGCGTGCCTT+TGG | 0.366312 | 4.2:-14642900 | MS.gene09043:CDS |
| TGGCGGAGAGGATCGGCTTC+GGG | 0.370454 | 4.2:+14652056 | None:intergenic |
| TTGGGATATTCATATTTCAT+TGG | 0.377449 | 4.2:-14643802 | MS.gene09043:CDS |
| GGGGAAAGCAGTGGTTATGG+TGG | 0.381635 | 4.2:-14650570 | MS.gene09043:CDS |
| ATGCTGCTTATATATCATAT+TGG | 0.387954 | 4.2:-14644114 | MS.gene09043:CDS |
| AAGTGATATCTCTCTGTTCC+TGG | 0.390139 | 4.2:-14642913 | MS.gene09043:CDS |
| CAGTGGTTATGGTGGGGATT+GGG | 0.390163 | 4.2:-14650562 | MS.gene09043:CDS |
| CACTTCCAGACGCTGACCTC+TGG | 0.399520 | 4.2:-14641656 | MS.gene09043:intron |
| CCATTTGGATCTTAGATGTT+GGG | 0.403358 | 4.2:-14641588 | MS.gene09043:CDS |
| CAGGACTCCACAATCTTTGA+TGG | 0.403931 | 4.2:-14650766 | MS.gene09043:CDS |
| GTCCGTAGTCAGTCCATAAT+AGG | 0.406256 | 4.2:+14639990 | None:intergenic |
| TGAGGAAGGTCCATGATCTT+TGG | 0.407040 | 4.2:+14651861 | None:intergenic |
| AGCATAATGGACGTGATTAT+GGG | 0.410264 | 4.2:-14650650 | MS.gene09043:CDS |
| TGCTGAGGAACATACTCCTC+TGG | 0.413213 | 4.2:+14643601 | None:intergenic |
| TGTCCAACCATAAGCACTTA+AGG | 0.414356 | 4.2:+14650674 | None:intergenic |
| TCAATGCTGTTGCAGTTTCA+AGG | 0.415448 | 4.2:-14651750 | MS.gene09043:intron |
| TGTAGACTGAGACCTTGTTT+TGG | 0.415661 | 4.2:+14639955 | None:intergenic |
| TTAGATTTGATGAACATTGA+TGG | 0.416706 | 4.2:-14643762 | MS.gene09043:CDS |
| AGCATAAGGAAAGTTTGTAT+TGG | 0.416961 | 4.2:-14651725 | MS.gene09043:CDS |
| AAGTTCAGATGAACGCCATT+TGG | 0.417413 | 4.2:-14641603 | MS.gene09043:CDS |
| GTTAATTTCTTCCCATTCAT+GGG | 0.417489 | 4.2:-14640331 | MS.gene09043:CDS |
| TGTGAAATTGCTATCAGATC+TGG | 0.421036 | 4.2:-14641403 | MS.gene09043:CDS |
| CGGGCCTCTCCAAAACTTCC+CGG | 0.422481 | 4.2:+14640383 | None:intergenic |
| GTTGGAGGATTTCCATTTGT+TGG | 0.424166 | 4.2:+14643577 | None:intergenic |
| CAGAACATGAGGCTCCATAT+TGG | 0.430301 | 4.2:-14639810 | MS.gene09043:CDS |
| CTAAGTGGAATGAGGACTTT+GGG | 0.435159 | 4.2:-14650314 | MS.gene09043:CDS |
| TTCTTTATATTTCAGTTCAT+CGG | 0.437648 | 4.2:+14645532 | None:intergenic |
| CTATCTCATTCAAGGGATCA+TGG | 0.438181 | 4.2:-14640051 | MS.gene09043:intron |
| AAAGGAGCACATCCATTTAC+GGG | 0.442785 | 4.2:-14639442 | MS.gene09043:CDS |
| TATGGTTGGACAAAGCATAA+TGG | 0.446338 | 4.2:-14650663 | MS.gene09043:CDS |
| AAATGGCGTTCATCTGAACT+TGG | 0.447337 | 4.2:+14641605 | None:intergenic |
| GTTCCTCAGCATCCAACAAA+TGG | 0.451082 | 4.2:-14643589 | MS.gene09043:CDS |
| ATGATCTTTGGCGCGGGAAA+AGG | 0.451971 | 4.2:+14651873 | None:intergenic |
| ACTGAGTTTCATTGTACCAT+TGG | 0.453158 | 4.2:+14642859 | None:intergenic |
| TTCATGCTGCAGATTATTGG+TGG | 0.453266 | 4.2:-14647441 | MS.gene09043:intron |
| GCAGTTTCAAGGTGAGCATA+AGG | 0.456902 | 4.2:-14651739 | MS.gene09043:intron |
| TAAGGAAACTAAACCTGAAA+AGG | 0.458739 | 4.2:-14641519 | MS.gene09043:intron |
| GCAGTGGTTATGGTGGGGAT+TGG | 0.460130 | 4.2:-14650563 | MS.gene09043:CDS |
| TCTAAGTGGAATGAGGACTT+TGG | 0.463553 | 4.2:-14650315 | MS.gene09043:CDS |
| TCTATCTCGGAATTCGTGCC+AGG | 0.464769 | 4.2:-14651683 | MS.gene09043:intron |
| ACCAAGTTTATAAAATCAAA+GGG | 0.466045 | 4.2:-14650591 | MS.gene09043:CDS |
| GCTCCTCAATTCTTTGTACA+TGG | 0.466154 | 4.2:+14639624 | None:intergenic |
| CAGGTTAACGGCAAGGGAAA+AGG | 0.470162 | 4.2:-14639460 | MS.gene09043:CDS |
| ACTCCACAATCTTTGATGGC+TGG | 0.476566 | 4.2:-14650762 | MS.gene09043:CDS |
| GGAATGATTCTCCCCATGAA+TGG | 0.477220 | 4.2:+14640319 | None:intergenic |
| AACAGATGAGCAGTTACTAT+TGG | 0.480973 | 4.2:-14642761 | MS.gene09043:CDS |
| TGTGGAAAACCTTGCATCAC+AGG | 0.481254 | 4.2:-14648259 | MS.gene09043:intron |
| ATGGTGGGGATTGGGCAGTT+CGG | 0.481492 | 4.2:-14650554 | MS.gene09043:CDS |
| AGAATCCGTTTCTGTTGGTA+AGG | 0.490514 | 4.2:-14645331 | MS.gene09043:CDS |
| TTGAGGAACCAACTTCAATA+CGG | 0.493230 | 4.2:+14640363 | None:intergenic |
| TGATTATGGGCATCAAGTAC+TGG | 0.496436 | 4.2:-14650637 | MS.gene09043:CDS |
| GAGCAGTACGATCAGGTTAA+CGG | 0.496540 | 4.2:-14639472 | MS.gene09043:CDS |
| GCCATTTGGATCTTAGATGT+TGG | 0.496786 | 4.2:-14641589 | MS.gene09043:CDS |
| GAATAATGAATTCAATGTGA+TGG | 0.497311 | 4.2:-14642940 | MS.gene09043:CDS |
| ATGCACATTAAGCAGGCGTT+GGG | 0.497460 | 4.2:-14643820 | MS.gene09043:intron |
| AACACAATATCTGTGGTGAA+TGG | 0.497694 | 4.2:+14647414 | None:intergenic |
| CCTTTGGTCGATTAGATGCA+TGG | 0.498690 | 4.2:-14642884 | MS.gene09043:CDS |
| TTTGTGGGAGCAGTACGATC+AGG | 0.500138 | 4.2:-14639479 | MS.gene09043:CDS |
| GGAGAATCATCTGATGAGTC+AGG | 0.500788 | 4.2:+14648060 | None:intergenic |
| GAATGATTCTCCCCATGAAT+GGG | 0.500873 | 4.2:+14640320 | None:intergenic |
| AAATTAACATAACCAATTTG+AGG | 0.501022 | 4.2:+14640346 | None:intergenic |
| GGAAAGCAGTGGTTATGGTG+GGG | 0.501090 | 4.2:-14650568 | MS.gene09043:CDS |
| AAAGATCATGGACCTTCCTC+AGG | 0.501146 | 4.2:-14651859 | MS.gene09043:intron |
| TACCAAGTTTATAAAATCAA+AGG | 0.501485 | 4.2:-14650592 | MS.gene09043:CDS |
| ATTCAAGGGATCATGGATCC+TGG | 0.504018 | 4.2:-14640044 | MS.gene09043:intron |
| GGAAGCTTATTAGGTGGCAT+TGG | 0.505261 | 4.2:-14645300 | MS.gene09043:CDS |
| TTCTGGGAGCTGAAGCACTA+AGG | 0.505458 | 4.2:-14643719 | MS.gene09043:intron |
| ACAGCTGTGTAAAGCTCAGC+AGG | 0.506785 | 4.2:+14644091 | None:intergenic |
| CCAAAACTTCCCGGACAAGC+TGG | 0.508137 | 4.2:+14640392 | None:intergenic |
| ATCGACCAAAGGCACGCTCC+AGG | 0.508917 | 4.2:+14642895 | None:intergenic |
| CGGGTTCAGCAGACGAAGAT+CGG | 0.513022 | 4.2:+14652075 | None:intergenic |
| GGGAAAGCAGTGGTTATGGT+GGG | 0.513543 | 4.2:-14650569 | MS.gene09043:CDS |
| TGTGACTCGCCAGCTTGTCC+GGG | 0.516195 | 4.2:-14640401 | MS.gene09043:CDS |
| TTTGGCTCTCGAACAGACAT+TGG | 0.521447 | 4.2:-14650192 | MS.gene09043:CDS |
| TGTGTTGTATTTCATGTACA+AGG | 0.521565 | 4.2:+14639831 | None:intergenic |
| CAATTTGTCTGATCTTGTTG+TGG | 0.524421 | 4.2:-14648277 | MS.gene09043:CDS |
| ATGCCTTAAGTGCTTATGGT+TGG | 0.527145 | 4.2:-14650677 | MS.gene09043:CDS |
| TTTCCATTTGTTGGATGCTG+AGG | 0.531081 | 4.2:+14643586 | None:intergenic |
| ATGTGGATCGGTGTGAAGGA+TGG | 0.531951 | 4.2:-14650735 | MS.gene09043:CDS |
| AGCAGCCTTACCAACAGAAA+CGG | 0.532526 | 4.2:+14645326 | None:intergenic |
| GATATATACCTTCAGAGTAA+TGG | 0.533943 | 4.2:+14639737 | None:intergenic |
| ATCAACTGTAGTATTAATGA+TGG | 0.535860 | 4.2:-14639413 | MS.gene09043:CDS |
| GGAGAGGCCCGTATTGAAGT+TGG | 0.536080 | 4.2:-14640371 | MS.gene09043:CDS |
| CCAGACGCTGACCTCTGGAT+TGG | 0.538402 | 4.2:-14641651 | MS.gene09043:intron |
| CTTGAGGCATGTCTGCAGAC+AGG | 0.538488 | 4.2:-14650703 | MS.gene09043:CDS |
| ATAGTAAAATCTTACAGTAA+GGG | 0.540673 | 4.2:+14645239 | None:intergenic |
| TACGATCAGGTTAACGGCAA+GGG | 0.540828 | 4.2:-14639466 | MS.gene09043:CDS |
| GATCTGAAACTGCATTACTC+TGG | 0.543079 | 4.2:-14648321 | MS.gene09043:CDS |
| ATTTGATGAACATTGATGGA+TGG | 0.544901 | 4.2:-14643758 | MS.gene09043:CDS |
| CTCGAACAGACATTGGAGAC+TGG | 0.548273 | 4.2:-14650185 | MS.gene09043:CDS |
| TATCGTCCTCATCTCTATCT+CGG | 0.550443 | 4.2:-14651696 | MS.gene09043:CDS |
| AAACCATGTACAAAGAATTG+AGG | 0.551218 | 4.2:-14639627 | MS.gene09043:CDS |
| GCTCCCAGAATTTGTTCTCG+TGG | 0.551308 | 4.2:+14643732 | None:intergenic |
| GGTGGTAATGTTCTTGATGT+AGG | 0.552266 | 4.2:-14650255 | MS.gene09043:CDS |
| CAGTTACTATTGGCGTGGAC+GGG | 0.554072 | 4.2:-14642751 | MS.gene09043:CDS |
| GATTCAGAATCCGTTTCTGT+TGG | 0.555863 | 4.2:-14645336 | MS.gene09043:CDS |
| TTCTATTTGGCTGATGAAGG+TGG | 0.556162 | 4.2:-14650273 | MS.gene09043:CDS |
| GCAGCTACATTTAAAGTCTA+CGG | 0.559690 | 4.2:-14650163 | MS.gene09043:intron |
| CCCAACATCTAAGATCCAAA+TGG | 0.560922 | 4.2:+14641588 | None:intergenic |
| TGAGGAACCAACTTCAATAC+GGG | 0.562177 | 4.2:+14640364 | None:intergenic |
| GATTAGATGCATGGTTCCAA+TGG | 0.562464 | 4.2:-14642875 | MS.gene09043:CDS |
| GCAGTTACTATTGGCGTGGA+CGG | 0.563372 | 4.2:-14642752 | MS.gene09043:CDS |
| ATACCACGAGAACAAATTCT+GGG | 0.563392 | 4.2:-14643735 | MS.gene09043:CDS |
| AGTTGATTCTTGCAGAGAGT+GGG | 0.570346 | 4.2:-14639669 | MS.gene09043:intron |
| AGCTTCTTGGCGGAGAGGAT+CGG | 0.571202 | 4.2:+14652049 | None:intergenic |
| TGGTACAATGAAACTCAGTC+AGG | 0.571656 | 4.2:-14642855 | MS.gene09043:intron |
| GAGCACATCCATTTACGGGT+TGG | 0.574434 | 4.2:-14639438 | MS.gene09043:CDS |
| AGGTCCATGATCTTTGGCGC+GGG | 0.581367 | 4.2:+14651867 | None:intergenic |
| TCTGTTGGTAAGGCTGCTGT+TGG | 0.582816 | 4.2:-14645321 | MS.gene09043:CDS |
| CATTGGATATCATTGGACAC+TGG | 0.583078 | 4.2:-14643785 | MS.gene09043:CDS |
| TACGATCTCTTGCCAAAACA+AGG | 0.584541 | 4.2:-14639967 | MS.gene09043:intron |
| GCTGAGGAACATACTCCTCT+GGG | 0.586239 | 4.2:+14643602 | None:intergenic |
| AAATGGAAAGAATTGAAAGC+AGG | 0.586969 | 4.2:-14640433 | MS.gene09043:CDS |
| GTGCACAATTATCAACAGAC+TGG | 0.587373 | 4.2:-14639505 | MS.gene09043:CDS |
| CTTTGATGGCTGGATTAATG+TGG | 0.589495 | 4.2:-14650752 | MS.gene09043:CDS |
| GGTCCAACCCCAGGTCTAAG+TGG | 0.590067 | 4.2:-14650329 | MS.gene09043:intron |
| GGTTAGAAGAAGCTTCTTGG+CGG | 0.591264 | 4.2:+14652039 | None:intergenic |
| AGCCTATTATGGACTGACTA+CGG | 0.592579 | 4.2:-14639992 | MS.gene09043:CDS |
| AACTTGGGTGAGAAGCTCGT+GGG | 0.595642 | 4.2:+14641621 | None:intergenic |
| AATCCAGCCATCAAAGATTG+TGG | 0.600052 | 4.2:+14650759 | None:intergenic |
| CTTGGAAAGGTTGATCGACA+TGG | 0.601530 | 4.2:+14644067 | None:intergenic |
| CATAAGGAAAGTTTGTATTG+GGG | 0.603784 | 4.2:-14651723 | MS.gene09043:CDS |
| GCTGTTGGAAGCTTATTAGG+TGG | 0.604166 | 4.2:-14645306 | MS.gene09043:CDS |
| GCACTCCACCATTACTCTGA+AGG | 0.604977 | 4.2:-14639745 | MS.gene09043:intron |
| TCAGACAAATTGTGAAAGTG+AGG | 0.606527 | 4.2:+14648288 | None:intergenic |
| ATATACCTTCAGAGTAATGG+TGG | 0.607960 | 4.2:+14639740 | None:intergenic |
| CCCCAGGTCTAAGTGGAATG+AGG | 0.608273 | 4.2:-14650322 | MS.gene09043:intron |
| CCTAACTTACCTGTGATGCA+AGG | 0.608491 | 4.2:+14648250 | None:intergenic |
| GGTTGAAGTTGACCTGAGGA+AGG | 0.611109 | 4.2:+14651847 | None:intergenic |
| GAACTTGGGTGAGAAGCTCG+TGG | 0.611848 | 4.2:+14641620 | None:intergenic |
| GTACGATCAGGTTAACGGCA+AGG | 0.612640 | 4.2:-14639467 | MS.gene09043:CDS |
| GAAATACAACACAGAACATG+AGG | 0.612707 | 4.2:-14639821 | MS.gene09043:CDS |
| AACACTTCAATTGAATCCCC+AGG | 0.612855 | 4.2:-14642718 | MS.gene09043:intron |
| GAAGAAGCTTCTTGGCGGAG+AGG | 0.616128 | 4.2:+14652044 | None:intergenic |
| ATGGCTGGATTAATGTGGAT+CGG | 0.617699 | 4.2:-14650747 | MS.gene09043:CDS |
| AACTGTAGTATTAATGATGG+CGG | 0.619160 | 4.2:-14639410 | MS.gene09043:CDS |
| TTAATTTCTTCCCATTCATG+GGG | 0.620878 | 4.2:-14640330 | MS.gene09043:CDS |
| AATGGCGTTCATCTGAACTT+GGG | 0.622487 | 4.2:+14641606 | None:intergenic |
| AAGGTCCATGATCTTTGGCG+CGG | 0.634022 | 4.2:+14651866 | None:intergenic |
| ATGAGCAGTTACTATTGGCG+TGG | 0.635286 | 4.2:-14642756 | MS.gene09043:CDS |
| TGTCGATCAACCTTTCCAAG+AGG | 0.650007 | 4.2:-14644064 | MS.gene09043:CDS |
| GTAACGACACGAGGAAGATG+AGG | 0.650819 | 4.2:+14651897 | None:intergenic |
| CATCAAGTACTGGTTGACCA+TGG | 0.651540 | 4.2:-14650627 | MS.gene09043:CDS |
| GAGGCATGTCTGCAGACAGG+AGG | 0.657209 | 4.2:-14650700 | MS.gene09043:CDS |
| CAAGTTTATAAAATCAAAGG+GGG | 0.658269 | 4.2:-14650589 | MS.gene09043:CDS |
| AGAGATAAACACAATATCTG+TGG | 0.662672 | 4.2:+14647407 | None:intergenic |
| CCATGCATCTAATCGACCAA+AGG | 0.663193 | 4.2:+14642884 | None:intergenic |
| AGATCTGGAGATATTGAACA+AGG | 0.664713 | 4.2:-14641388 | MS.gene09043:intron |
| CCAAGTTTATAAAATCAAAG+GGG | 0.669326 | 4.2:-14650590 | MS.gene09043:CDS |
| ATTAATGTGGATCGGTGTGA+AGG | 0.672290 | 4.2:-14650739 | MS.gene09043:CDS |
| GGAAAAGGTGTAACGACACG+AGG | 0.675730 | 4.2:+14651888 | None:intergenic |
| TGGTAGTCAAGATCATGCCA+TGG | 0.676038 | 4.2:+14650610 | None:intergenic |
| AGATCGGACTCTGCTACGAA+CGG | 0.676116 | 4.2:+14652091 | None:intergenic |
| TGGGTAATCATCCAATCCAG+AGG | 0.683806 | 4.2:+14641640 | None:intergenic |
| CCCAGCACTGCAGAAATGAG+CGG | 0.684345 | 4.2:-14652128 | None:intergenic |
| CGAATTCCGAGATAGAGATG+AGG | 0.685066 | 4.2:+14651690 | None:intergenic |
| AGGATGGTAGTAATCACTTG+AGG | 0.685926 | 4.2:-14650719 | MS.gene09043:CDS |
| CATGAGGCTCCATATTGGAG+AGG | 0.689114 | 4.2:-14639805 | MS.gene09043:CDS |
| TATTTGCAGTAGGATCCCAG+AGG | 0.797138 | 4.2:-14643617 | MS.gene09043:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 14639390 | 14652135 | 14639390 | ID=MS.gene09043 |
| chr4.2 | mRNA | 14639390 | 14652135 | 14639390 | ID=MS.gene09043.t1;Parent=MS.gene09043 |
| chr4.2 | exon | 14652039 | 14652135 | 14652039 | ID=MS.gene09043.t1.exon1;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14652039 | 14652135 | 14652039 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14651860 | 14651924 | 14651860 | ID=MS.gene09043.t1.exon2;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14651860 | 14651924 | 14651860 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14651684 | 14651757 | 14651684 | ID=MS.gene09043.t1.exon3;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14651684 | 14651757 | 14651684 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14650534 | 14650785 | 14650534 | ID=MS.gene09043.t1.exon4;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14650534 | 14650785 | 14650534 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14650164 | 14650338 | 14650164 | ID=MS.gene09043.t1.exon5;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14650164 | 14650338 | 14650164 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14648260 | 14648346 | 14648260 | ID=MS.gene09043.t1.exon6;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14648260 | 14648346 | 14648260 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14648041 | 14648109 | 14648041 | ID=MS.gene09043.t1.exon7;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14648041 | 14648109 | 14648041 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14647355 | 14647451 | 14647355 | ID=MS.gene09043.t1.exon8;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14647355 | 14647451 | 14647355 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14645484 | 14645566 | 14645484 | ID=MS.gene09043.t1.exon9;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14645484 | 14645566 | 14645484 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14645254 | 14645361 | 14645254 | ID=MS.gene09043.t1.exon10;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14645254 | 14645361 | 14645254 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14644025 | 14644146 | 14644025 | ID=MS.gene09043.t1.exon11;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14644025 | 14644146 | 14644025 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14643720 | 14643827 | 14643720 | ID=MS.gene09043.t1.exon12;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14643720 | 14643827 | 14643720 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14643557 | 14643630 | 14643557 | ID=MS.gene09043.t1.exon13;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14643557 | 14643630 | 14643557 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14642856 | 14642981 | 14642856 | ID=MS.gene09043.t1.exon14;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14642856 | 14642981 | 14642856 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14642719 | 14642786 | 14642719 | ID=MS.gene09043.t1.exon15;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14642719 | 14642786 | 14642719 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14641520 | 14641669 | 14641520 | ID=MS.gene09043.t1.exon16;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14641520 | 14641669 | 14641520 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14641389 | 14641439 | 14641389 | ID=MS.gene09043.t1.exon17;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14641389 | 14641439 | 14641389 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14640585 | 14640641 | 14640585 | ID=MS.gene09043.t1.exon18;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14640585 | 14640641 | 14640585 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14640315 | 14640464 | 14640315 | ID=MS.gene09043.t1.exon19;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14640315 | 14640464 | 14640315 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14639968 | 14640059 | 14639968 | ID=MS.gene09043.t1.exon20;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14639968 | 14640059 | 14639968 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14639746 | 14639855 | 14639746 | ID=MS.gene09043.t1.exon21;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14639746 | 14639855 | 14639746 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14639613 | 14639676 | 14639613 | ID=MS.gene09043.t1.exon22;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14639613 | 14639676 | 14639613 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| chr4.2 | exon | 14639390 | 14639534 | 14639390 | ID=MS.gene09043.t1.exon23;Parent=MS.gene09043.t1 |
| chr4.2 | CDS | 14639390 | 14639534 | 14639390 | ID=cds.MS.gene09043.t1;Parent=MS.gene09043.t1 |
| Gene Sequence |
| Protein sequence |
