Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08447.t1 | XP_013446555.1 | 97.8 | 849 | 19 | 0 | 1 | 849 | 1 | 849 | 0.00E+00 | 1713.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08447.t1 | F4HTM3 | 64.0 | 852 | 298 | 6 | 1 | 846 | 1 | 849 | 0.0e+00 | 1137.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08447.t1 | A0A072TT32 | 97.8 | 849 | 19 | 0 | 1 | 849 | 1 | 849 | 0.0e+00 | 1713.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08447 | MS.gene023400 | PPI |
| MS.gene023400 | MS.gene08447 | PPI |
| MS.gene08447 | MS.gene023402 | PPI |
| MS.gene08447 | MS.gene09043 | PPI |
| MS.gene08447 | MS.gene09042 | PPI |
| MS.gene08447 | MS.gene09198 | PPI |
| MS.gene09201 | MS.gene08447 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08447.t1 | MTR_8g080360 | 97.762 | 849 | 19 | 0 | 1 | 849 | 1 | 849 | 0.0 | 1722 |
| MS.gene08447.t1 | MTR_8g080290 | 78.353 | 850 | 174 | 3 | 1 | 849 | 1 | 841 | 0.0 | 1375 |
| MS.gene08447.t1 | MTR_8g080290 | 81.284 | 732 | 132 | 1 | 118 | 849 | 38 | 764 | 0.0 | 1261 |
| MS.gene08447.t1 | MTR_8g080290 | 78.284 | 746 | 152 | 3 | 1 | 745 | 1 | 737 | 0.0 | 1195 |
| MS.gene08447.t1 | MTR_8g080290 | 76.902 | 723 | 157 | 3 | 1 | 722 | 1 | 714 | 0.0 | 1138 |
| MS.gene08447.t1 | MTR_8g080290 | 80.744 | 618 | 114 | 1 | 232 | 849 | 14 | 626 | 0.0 | 1058 |
| MS.gene08447.t1 | MTR_8g080290 | 77.586 | 580 | 125 | 2 | 1 | 579 | 1 | 576 | 0.0 | 916 |
| MS.gene08447.t1 | MTR_8g080290 | 77.682 | 578 | 124 | 2 | 1 | 577 | 1 | 574 | 0.0 | 915 |
| MS.gene08447.t1 | MTR_8g080290 | 74.627 | 603 | 125 | 3 | 1 | 579 | 1 | 599 | 0.0 | 903 |
| MS.gene08447.t1 | MTR_8g080290 | 77.617 | 554 | 119 | 2 | 1 | 553 | 1 | 550 | 0.0 | 871 |
| MS.gene08447.t1 | MTR_8g080290 | 78.363 | 513 | 106 | 2 | 1 | 512 | 1 | 509 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08447.t1 | AT1G67490 | 63.658 | 853 | 299 | 6 | 1 | 846 | 1 | 849 | 0.0 | 1128 |
| MS.gene08447.t1 | AT1G24320 | 60.363 | 772 | 303 | 2 | 76 | 846 | 17 | 786 | 0.0 | 999 |
| MS.gene08447.t1 | AT1G24320 | 58.549 | 772 | 286 | 4 | 76 | 846 | 17 | 755 | 0.0 | 952 |
| MS.gene08447.t1 | AT1G67490 | 67.185 | 643 | 210 | 1 | 205 | 846 | 123 | 765 | 0.0 | 920 |
| MS.gene08447.t1 | AT1G67490 | 45.669 | 127 | 61 | 4 | 1 | 121 | 1 | 125 | 7.35e-22 | 102 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTGCTTACTTTGATTT+TGG | 0.121024 | 4.3:-16463469 | MS.gene08447:CDS |
| AAGCATAATGGGCGTGATTA+TGG | 0.169937 | 4.3:-16470959 | MS.gene08447:CDS |
| TCTAAGTGGAATGAAGAATT+TGG | 0.191114 | 4.3:-16470642 | MS.gene08447:CDS |
| CATGCTAGGTTCAACTAAAA+TGG | 0.226231 | 4.3:-16463319 | MS.gene08447:intron |
| AACTTCATGGTGCAGATTAT+TGG | 0.230441 | 4.3:-16467789 | MS.gene08447:intron |
| AATTGAGAAGCAATTTAATT+AGG | 0.251118 | 4.3:-16462656 | MS.gene08447:intron |
| TCTTTCCAAGAGGATTTCTA+TGG | 0.258921 | 4.3:-16466551 | MS.gene08447:CDS |
| GCTGCTATTGGAAGCTTATT+AGG | 0.260592 | 4.3:-16467176 | MS.gene08447:CDS |
| TTTCAAATAACAGCCTCTTA+TGG | 0.264048 | 4.3:-16463018 | MS.gene08447:CDS |
| CTAATATCAGGAACTGATTC+TGG | 0.266719 | 4.3:-16467738 | MS.gene08447:CDS |
| TTCTTTATATTTCAGTTCAT+TGG | 0.273350 | 4.3:+16467464 | None:intergenic |
| GATCTGAAAGTGCATTATTC+TGG | 0.275856 | 4.3:-16468884 | MS.gene08447:CDS |
| AGTGATGTCCAACCCGTAAA+TGG | 0.275954 | 4.3:+16462463 | None:intergenic |
| AATGAAATGATGCAGAATTA+TGG | 0.289807 | 4.3:-16464351 | MS.gene08447:intron |
| GCATAAGGAGAGTTTGTATT+GGG | 0.295563 | 4.3:-16471613 | MS.gene08447:CDS |
| CATTTAGGGATCATGGATTC+TGG | 0.296093 | 4.3:-16463059 | MS.gene08447:intron |
| GGCGGCATCGGTTACTTCTA+TGG | 0.300623 | 4.3:-16467155 | MS.gene08447:CDS |
| CAATTCTGTGTATATAGCTT+TGG | 0.304551 | 4.3:+16462674 | None:intergenic |
| GAGCGCATCCATAGTCTTAC+AGG | 0.314982 | 4.3:-16467699 | MS.gene08447:intron |
| TGTTAGTCTGTTCCCATTCA+TGG | 0.316927 | 4.3:-16463201 | MS.gene08447:CDS |
| CGGCCTTCCTTCACCGGCAT+CGG | 0.321994 | 4.3:+16471935 | None:intergenic |
| ATGCTTCTCGTCAGCTTGTC+CGG | 0.328392 | 4.3:-16463271 | MS.gene08447:CDS |
| CAGGACTCCACAATCTTTGA+TGG | 0.330269 | 4.3:-16471074 | MS.gene08447:CDS |
| CTAGGTTGTAGACCTTGTTT+TGG | 0.335750 | 4.3:+16462970 | None:intergenic |
| AGCGGCAGTTCTTCCGCTTC+CGG | 0.337392 | 4.3:+16471986 | None:intergenic |
| GCTTCCAATAGCAGCTTTAC+CGG | 0.337721 | 4.3:+16467184 | None:intergenic |
| CAAATGGGACCTCTCCAATA+TGG | 0.338192 | 4.3:+16462836 | None:intergenic |
| AAAAGGAGCACGTCCATTTA+CGG | 0.345194 | 4.3:-16462476 | MS.gene08447:CDS |
| TTCTCGGGGCTGAAGCATTA+AGG | 0.351385 | 4.3:-16466235 | MS.gene08447:intron |
| GTAATTCATGTTTATCCAAA+TGG | 0.351539 | 4.3:+16462820 | None:intergenic |
| TCCTTCACCGGCATCGGGTT+CGG | 0.351713 | 4.3:+16471941 | None:intergenic |
| AGCATAATGGGCGTGATTAT+GGG | 0.360075 | 4.3:-16470958 | MS.gene08447:CDS |
| GAGCAGTACGATCAGATTAA+AGG | 0.363593 | 4.3:-16462505 | MS.gene08447:CDS |
| GAGGATGACTTAAGTACTTA+TGG | 0.363795 | 4.3:-16470989 | MS.gene08447:CDS |
| CTGATCGAGGTCAATGATCT+TGG | 0.364420 | 4.3:+16471725 | None:intergenic |
| CGTATTTCGTTGGATATCAT+TGG | 0.366288 | 4.3:-16466308 | MS.gene08447:CDS |
| GCTTTGGCTTTGCTCCGATA+TGG | 0.366816 | 4.3:+16462690 | None:intergenic |
| CCTCTGCGGCGGTTAAATTT+CGG | 0.369400 | 4.3:+16471915 | None:intergenic |
| AAGGGTGATGACAGTGGTTA+TGG | 0.369554 | 4.3:-16470881 | MS.gene08447:CDS |
| GTTGGAGGATTTCCATTTGT+TGG | 0.377253 | 4.3:+16466095 | None:intergenic |
| ACTGTCTCATTTAGGGATCA+TGG | 0.381195 | 4.3:-16463066 | MS.gene08447:intron |
| TGCTGAGGAACAAATTCATC+TGG | 0.382600 | 4.3:+16466119 | None:intergenic |
| CTGAGCATGATCCTCCATAT+TGG | 0.385445 | 4.3:-16462850 | MS.gene08447:CDS |
| AGCCTCTTATGGACTGACTA+TGG | 0.386485 | 4.3:-16463007 | MS.gene08447:CDS |
| CATATTGGAGAGGTCCCATT+TGG | 0.388396 | 4.3:-16462835 | MS.gene08447:CDS |
| ACTAAAGTAACTTACATTAA+GGG | 0.390291 | 4.3:+16467106 | None:intergenic |
| CTAAGTGGAATGAAGAATTT+GGG | 0.391676 | 4.3:-16470641 | MS.gene08447:CDS |
| CTGGCTCTCGATCAGACATT+GGG | 0.393178 | 4.3:-16470518 | MS.gene08447:CDS |
| ACAGATATTGTGCTAATATC+AGG | 0.395508 | 4.3:-16467750 | MS.gene08447:CDS |
| GTTAGTCTGTTCCCATTCAT+GGG | 0.400749 | 4.3:-16463200 | MS.gene08447:CDS |
| GAGAGTTCTTTACTTGCATC+TGG | 0.401082 | 4.3:-16470537 | MS.gene08447:CDS |
| ATGTTGATTATGTATCATAT+TGG | 0.405233 | 4.3:-16466611 | MS.gene08447:CDS |
| AAAGGAGCACGTCCATTTAC+GGG | 0.417891 | 4.3:-16462475 | MS.gene08447:CDS |
| TTTATCCAACAACTTCTCAA+TGG | 0.419671 | 4.3:+16464455 | None:intergenic |
| TTAGATTTGATGAACGTTGA+TGG | 0.422257 | 4.3:-16466278 | MS.gene08447:CDS |
| GCATTCCATTGAGAAGTTGT+TGG | 0.425110 | 4.3:-16464460 | MS.gene08447:CDS |
| GAAGAGGCCTGTATTAAGAT+TGG | 0.426147 | 4.3:-16463240 | MS.gene08447:CDS |
| GGCCTTCCTTCACCGGCATC+GGG | 0.432102 | 4.3:+16471936 | None:intergenic |
| TAATTCATGTTTATCCAAAT+GGG | 0.433787 | 4.3:+16462821 | None:intergenic |
| GTTCCTCAGCATCCAACAAA+TGG | 0.437876 | 4.3:-16466107 | MS.gene08447:CDS |
| CAGTGGTTATGGAGGGGACT+GGG | 0.443295 | 4.3:-16470870 | MS.gene08447:CDS |
| CCTTTGTTCGATTGGAAGCA+TGG | 0.445256 | 4.3:-16465253 | MS.gene08447:CDS |
| CAGATTAAAGGCAAGGGAAA+AGG | 0.447431 | 4.3:-16462493 | MS.gene08447:CDS |
| AGCAGCTTTACCGGCAGAAA+CGG | 0.448450 | 4.3:+16467193 | None:intergenic |
| AAATTTCGGCCTTCCTTCAC+CGG | 0.450484 | 4.3:+16471929 | None:intergenic |
| TGCTTCTCGTCAGCTTGTCC+GGG | 0.451163 | 4.3:-16463270 | MS.gene08447:CDS |
| TCTGCCGGTAAAGCTGCTAT+TGG | 0.453004 | 4.3:-16467188 | MS.gene08447:CDS |
| ATGAACATTAATCAGGCGTT+GGG | 0.460197 | 4.3:-16466336 | MS.gene08447:intron |
| TCTATCTCGGAATTCGTGCC+AGG | 0.464769 | 4.3:-16471572 | MS.gene08447:intron |
| CGCAGAGGAAGAAGCAAATA+CGG | 0.467488 | 4.3:-16471900 | MS.gene08447:CDS |
| ATGCTGACATTGTCGAATAA+CGG | 0.468313 | 4.3:+16471867 | None:intergenic |
| AGAGCGCTCCTTTGTTCGAT+TGG | 0.469878 | 4.3:-16465261 | MS.gene08447:CDS |
| ATGATCTTGGGCGCGGGAAG+AGG | 0.470156 | 4.3:+16471738 | None:intergenic |
| TGAACTGAAATATAAAGAAC+AGG | 0.471940 | 4.3:-16467460 | MS.gene08447:CDS |
| AGAGGATTTCTATGGGATGA+AGG | 0.475581 | 4.3:-16466543 | MS.gene08447:CDS |
| ACTCCACAATCTTTGATGGC+TGG | 0.476566 | 4.3:-16471070 | MS.gene08447:CDS |
| GGAATGATTCTCCCCATGAA+TGG | 0.477630 | 4.3:+16463188 | None:intergenic |
| GTCCATAGTCAGTCCATAAG+AGG | 0.478491 | 4.3:+16463005 | None:intergenic |
| GCACTCCACCATTATTCAAA+AGG | 0.478741 | 4.3:-16462785 | MS.gene08447:intron |
| AGATGTAAGTAGAGAAAACT+TGG | 0.479345 | 4.3:-16470568 | MS.gene08447:CDS |
| TACCACGTGAACAAATTCTC+GGG | 0.480490 | 4.3:-16466250 | MS.gene08447:CDS |
| CCGTTAGAAATGACCGGAAG+CGG | 0.480542 | 4.3:-16471999 | None:intergenic |
| ATCGAACAAAGGAGCGCTCT+AGG | 0.483874 | 4.3:+16465264 | None:intergenic |
| AGTGTTGCGTTTCATGTACA+TGG | 0.488468 | 4.3:+16462871 | None:intergenic |
| AGCATAAGGAGAGTTTGTAT+TGG | 0.489664 | 4.3:-16471614 | MS.gene08447:CDS |
| TTGGGATATTCGTATTTCGT+TGG | 0.489807 | 4.3:-16466318 | MS.gene08447:CDS |
| TGAGGAACCAATCTTAATAC+AGG | 0.491235 | 4.3:+16463233 | None:intergenic |
| GGTGATGACAGTGGTTATGG+AGG | 0.492012 | 4.3:-16470878 | MS.gene08447:CDS |
| CGTTGGATATCATTGGTCAC+TGG | 0.492407 | 4.3:-16466301 | MS.gene08447:CDS |
| ATGGCTGGATTAATGTGGAT+TGG | 0.494273 | 4.3:-16471055 | MS.gene08447:CDS |
| TGATCGAGGTCAATGATCTT+GGG | 0.496968 | 4.3:+16471726 | None:intergenic |
| TTCATGGTGCAGATTATTGG+TGG | 0.497097 | 4.3:-16467786 | MS.gene08447:intron |
| TTAATCATGGCAGAAGCATA+TGG | 0.497563 | 4.3:-16462433 | MS.gene08447:CDS |
| TCACTGTTGTCGCAGTTTCA+AGG | 0.497693 | 4.3:-16471639 | MS.gene08447:intron |
| GAATGATTCTCCCCATGAAT+GGG | 0.498618 | 4.3:+16463189 | None:intergenic |
| AACAAATGAGCAGCTACTAC+TGG | 0.499573 | 4.3:-16465104 | MS.gene08447:CDS |
| TGGTTCAATACAACTCAGTC+AGG | 0.504158 | 4.3:-16465224 | MS.gene08447:intron |
| TTGCAGAGAATGGACCATAT+CGG | 0.505181 | 4.3:-16462704 | MS.gene08447:intron |
| CAATTTGTCTGATCTTGTTG+AGG | 0.509858 | 4.3:-16468840 | MS.gene08447:CDS |
| ATGACTTAAGTACTTATGGT+TGG | 0.510296 | 4.3:-16470985 | MS.gene08447:CDS |
| AAGTGGCGTTCATCTTCACT+TGG | 0.510451 | 4.3:+16464522 | None:intergenic |
| CTCGATCAGACATTGGGGAT+TGG | 0.511552 | 4.3:-16470512 | MS.gene08447:CDS |
| TCTGGCTCTCGATCAGACAT+TGG | 0.511869 | 4.3:-16470519 | MS.gene08447:CDS |
| TGCCGTGGTCAACGAGTACT+TGG | 0.515945 | 4.3:+16470933 | None:intergenic |
| ATCACTTGTAGTATTAATCA+TGG | 0.516772 | 4.3:-16462446 | MS.gene08447:CDS |
| AGACGAATCTTCTAATGTGT+TGG | 0.518096 | 4.3:-16468642 | MS.gene08447:CDS |
| AAATGGAAAGAGATGGAGAC+TGG | 0.521161 | 4.3:-16463302 | MS.gene08447:CDS |
| GCAGTTTCAAGGTGAGCATA+AGG | 0.522494 | 4.3:-16471628 | MS.gene08447:intron |
| TCATCCCATAGAAATCCTCT+TGG | 0.523691 | 4.3:+16466546 | None:intergenic |
| CAAGATCATTGACCTCGATC+AGG | 0.523833 | 4.3:-16471724 | MS.gene08447:intron |
| TTGGATAAAGAAACCAGGCC+TGG | 0.525691 | 4.3:-16464441 | MS.gene08447:CDS |
| GCCACTTGGATCTTAGATGC+TGG | 0.526504 | 4.3:-16464506 | MS.gene08447:CDS |
| ACTGAGTTGTATTGAACCAT+TGG | 0.527811 | 4.3:+16465228 | None:intergenic |
| ATACCACGTGAACAAATTCT+CGG | 0.530402 | 4.3:-16466251 | MS.gene08447:CDS |
| TTTCCATTTGTTGGATGCTG+AGG | 0.531081 | 4.3:+16466104 | None:intergenic |
| CTTTCCAAGAGGATTTCTAT+GGG | 0.532235 | 4.3:-16466550 | MS.gene08447:CDS |
| GCAGCTACATTTAAAGTCCA+AGG | 0.534105 | 4.3:-16470490 | MS.gene08447:intron |
| GACTCAGAATCCGTTTCTGC+CGG | 0.539126 | 4.3:-16467203 | MS.gene08447:CDS |
| TAGGACATTACCACCTTCAT+CGG | 0.539199 | 4.3:+16470590 | None:intergenic |
| TCCGAACCCGATGCCGGTGA+AGG | 0.540127 | 4.3:-16471942 | MS.gene08447:CDS |
| GTACGTAACTATCAAGAGAC+TGG | 0.540165 | 4.3:-16462538 | MS.gene08447:CDS |
| GGAAGCTTATTAGGCGGCAT+CGG | 0.542443 | 4.3:-16467167 | MS.gene08447:CDS |
| ATTTGATGAACGTTGATGGA+TGG | 0.542797 | 4.3:-16466274 | MS.gene08447:CDS |
| ACAGCTGTATAAAGCTCAGC+AGG | 0.543265 | 4.3:+16466588 | None:intergenic |
| CATCTAACCCCAGGTCTAAG+TGG | 0.544508 | 4.3:-16470656 | MS.gene08447:intron |
| GATTGGAAGCATGGTTCCAA+TGG | 0.545438 | 4.3:-16465244 | MS.gene08447:CDS |
| AACCCGATGCCGGTGAAGGA+AGG | 0.546387 | 4.3:-16471938 | MS.gene08447:CDS |
| TCTTCCTCCGAACCCGATGC+CGG | 0.549933 | 4.3:-16471948 | MS.gene08447:CDS |
| TATCGTCCTCATCTCTATCT+CGG | 0.550443 | 4.3:-16471585 | MS.gene08447:CDS |
| GAATAATGAGTTCACTGCAA+AGG | 0.554341 | 4.3:-16465309 | MS.gene08447:CDS |
| TCAACTAAAATGGAAAGAGA+TGG | 0.559447 | 4.3:-16463309 | MS.gene08447:CDS |
| ACAGTGGTTATGGAGGGGAC+TGG | 0.560664 | 4.3:-16470871 | MS.gene08447:CDS |
| TTCTATTTGGCCGATGAAGG+TGG | 0.563608 | 4.3:-16470600 | MS.gene08447:CDS |
| TAAAGAAACCAGGCCTGGCA+AGG | 0.565874 | 4.3:-16464436 | MS.gene08447:intron |
| TTCACCGGCATCGGGTTCGG+AGG | 0.566237 | 4.3:+16471944 | None:intergenic |
| GCCCCGAGAATTTGTTCACG+TGG | 0.571440 | 4.3:+16466248 | None:intergenic |
| AGGTCAATGATCTTGGGCGC+GGG | 0.571492 | 4.3:+16471732 | None:intergenic |
| CTTTGATGGCTGGATTAATG+TGG | 0.572681 | 4.3:-16471060 | MS.gene08447:CDS |
| GAGGTCAATGATCTTGGGCG+CGG | 0.572746 | 4.3:+16471731 | None:intergenic |
| AAGTGAAGATGAACGCCACT+TGG | 0.574784 | 4.3:-16464520 | MS.gene08447:CDS |
| ATGAGCAGCTACTACTGGCA+TGG | 0.577502 | 4.3:-16465099 | MS.gene08447:CDS |
| TCACTTGGGTGCGAAGCACG+TGG | 0.577698 | 4.3:+16464537 | None:intergenic |
| AGCACAATATCTGTAGTGAA+AGG | 0.578409 | 4.3:+16467759 | None:intergenic |
| GACGATCCGTTAGAAATGAC+CGG | 0.581585 | 4.3:-16472005 | None:intergenic |
| TACGATCAGATTAAAGGCAA+GGG | 0.581634 | 4.3:-16462499 | MS.gene08447:CDS |
| GTACGATCAGATTAAAGGCA+AGG | 0.583444 | 4.3:-16462500 | MS.gene08447:CDS |
| TACGTTCTCTTGCCAAAACA+AGG | 0.584541 | 4.3:-16462982 | MS.gene08447:intron |
| GAGCACGTCCATTTACGGGT+TGG | 0.587130 | 4.3:-16462471 | MS.gene08447:CDS |
| TTAAGATTGGTTCCTCACAT+TGG | 0.590145 | 4.3:-16463227 | MS.gene08447:CDS |
| GTGGAATGAAGAATTTGGGA+GGG | 0.599051 | 4.3:-16470637 | MS.gene08447:CDS |
| AATCCAGCCATCAAAGATTG+TGG | 0.600052 | 4.3:+16471067 | None:intergenic |
| CCGAAATTTAACCGCCGCAG+AGG | 0.601143 | 4.3:-16471915 | MS.gene08447:CDS |
| TGGAATGAAGAATTTGGGAG+GGG | 0.602311 | 4.3:-16470636 | MS.gene08447:CDS |
| GTGATGACAGTGGTTATGGA+GGG | 0.602918 | 4.3:-16470877 | MS.gene08447:CDS |
| TCAGACAAATTGTGAAAGTG+AGG | 0.606527 | 4.3:+16468851 | None:intergenic |
| GGAAGAGGCGTAACAGCACG+AGG | 0.607501 | 4.3:+16471753 | None:intergenic |
| CTTGGAAAGAAAGACCGACT+TGG | 0.608880 | 4.3:+16466564 | None:intergenic |
| AGTGGCGTTCATCTTCACTT+GGG | 0.610982 | 4.3:+16464523 | None:intergenic |
| ATGTGGATTGGTGTGAAGGA+CGG | 0.611545 | 4.3:-16471043 | MS.gene08447:CDS |
| GCTGAGGAACAAATTCATCT+GGG | 0.619449 | 4.3:+16466120 | None:intergenic |
| CCATGCTTCCAATCGAACAA+AGG | 0.623110 | 4.3:+16465253 | None:intergenic |
| CACTTGGGTGCGAAGCACGT+GGG | 0.624468 | 4.3:+16464538 | None:intergenic |
| CAGGCCTCTTCGAAACATCC+CGG | 0.626034 | 4.3:+16463252 | None:intergenic |
| AGATCATGAGTTACTGAACC+AGG | 0.626651 | 4.3:-16464307 | MS.gene08447:intron |
| GAAGCGGAAGAACTGCCGCT+CGG | 0.628429 | 4.3:-16471983 | MS.gene08447:CDS |
| TGATTCTGGAAGTTCAAGAG+TGG | 0.632788 | 4.3:-16467724 | MS.gene08447:CDS |
| TTTATACAGCTGTACCAAGT+CGG | 0.636809 | 4.3:-16466578 | MS.gene08447:CDS |
| AATGCGTGAATTAAATCCCA+AGG | 0.639348 | 4.3:-16465061 | MS.gene08447:intron |
| ATTAATGTGGATTGGTGTGA+AGG | 0.642346 | 4.3:-16471047 | MS.gene08447:CDS |
| AAATCAAAGGGTGATGACAG+TGG | 0.642593 | 4.3:-16470887 | MS.gene08447:CDS |
| ATTTGCTTCTTCCTCTGCGG+CGG | 0.643871 | 4.3:+16471904 | None:intergenic |
| AGTCGGTCTTTCTTTCCAAG+AGG | 0.645169 | 4.3:-16466561 | MS.gene08447:CDS |
| TTGTCCGGGATGTTTCGAAG+AGG | 0.654001 | 4.3:-16463256 | MS.gene08447:CDS |
| TTAGTCTGTTCCCATTCATG+GGG | 0.654303 | 4.3:-16463199 | MS.gene08447:CDS |
| GCTATTGGAAGCTTATTAGG+CGG | 0.654543 | 4.3:-16467173 | MS.gene08447:CDS |
| TGATGACAGTGGTTATGGAG+GGG | 0.655116 | 4.3:-16470876 | MS.gene08447:CDS |
| ATGGGACCTCTCCAATATGG+AGG | 0.660961 | 4.3:+16462839 | None:intergenic |
| CATAAGGAGAGTTTGTATTG+GGG | 0.664455 | 4.3:-16471612 | MS.gene08447:CDS |
| CAGTAGTCAAGATGATGCCG+TGG | 0.665541 | 4.3:+16470918 | None:intergenic |
| AGTTGTTGGATAAAGAAACC+AGG | 0.668969 | 4.3:-16464446 | MS.gene08447:CDS |
| TGGCTCTCGATCAGACATTG+GGG | 0.670107 | 4.3:-16470517 | MS.gene08447:CDS |
| CGTATTTGCTTCTTCCTCTG+CGG | 0.675869 | 4.3:+16471901 | None:intergenic |
| CATGATCCTCCATATTGGAG+AGG | 0.676723 | 4.3:-16462845 | MS.gene08447:CDS |
| AGACTAACATAACCAATGTG+AGG | 0.681050 | 4.3:+16463215 | None:intergenic |
| TGGGTAATCATCTAATCCAG+AGG | 0.682487 | 4.3:+16464557 | None:intergenic |
| AGTGGAATGAAGAATTTGGG+AGG | 0.684032 | 4.3:-16470638 | MS.gene08447:CDS |
| CACCAAGTACTCGTTGACCA+CGG | 0.684927 | 4.3:-16470935 | MS.gene08447:CDS |
| CGAATTCCGAGATAGAGATG+AGG | 0.685066 | 4.3:+16471579 | None:intergenic |
| GTAACAGCACGAGGAAGACG+AGG | 0.686369 | 4.3:+16471762 | None:intergenic |
| ACCACGTGAACAAATTCTCG+GGG | 0.694043 | 4.3:-16466249 | MS.gene08447:CDS |
| AGTTGAAGTTAACCTGATCG+AGG | 0.702632 | 4.3:+16471712 | None:intergenic |
| AGGAAGACGAGGTTCAGCAA+CGG | 0.703556 | 4.3:+16471773 | None:intergenic |
| TCCAGCATCTAAGATCCAAG+TGG | 0.704184 | 4.3:+16464505 | None:intergenic |
| GAGGCATGTTTGTAGACACG+AGG | 0.704448 | 4.3:-16471008 | MS.gene08447:CDS |
| AGGACGGTAGATATCACTTG+AGG | 0.704516 | 4.3:-16471027 | MS.gene08447:CDS |
| AGATCTGACTCTGCTCCGAG+CGG | 0.726113 | 4.3:+16471968 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 16462423 | 16472012 | 16462423 | ID=MS.gene08447 |
| chr4.3 | mRNA | 16462423 | 16472012 | 16462423 | ID=MS.gene08447.t1;Parent=MS.gene08447 |
| chr4.3 | exon | 16471725 | 16472012 | 16471725 | ID=MS.gene08447.t1.exon1;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16471725 | 16472012 | 16471725 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16471573 | 16471646 | 16471573 | ID=MS.gene08447.t1.exon2;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16471573 | 16471646 | 16471573 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16470842 | 16471093 | 16470842 | ID=MS.gene08447.t1.exon3;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16470842 | 16471093 | 16470842 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16470491 | 16470665 | 16470491 | ID=MS.gene08447.t1.exon4;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16470491 | 16470665 | 16470491 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16468823 | 16468909 | 16468823 | ID=MS.gene08447.t1.exon5;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16468823 | 16468909 | 16468823 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16468634 | 16468702 | 16468634 | ID=MS.gene08447.t1.exon6;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16468634 | 16468702 | 16468634 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16467700 | 16467796 | 16467700 | ID=MS.gene08447.t1.exon7;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16467700 | 16467796 | 16467700 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16467416 | 16467498 | 16467416 | ID=MS.gene08447.t1.exon8;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16467416 | 16467498 | 16467416 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16467121 | 16467228 | 16467121 | ID=MS.gene08447.t1.exon9;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16467121 | 16467228 | 16467121 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16466522 | 16466643 | 16466522 | ID=MS.gene08447.t1.exon10;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16466522 | 16466643 | 16466522 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16466236 | 16466343 | 16466236 | ID=MS.gene08447.t1.exon11;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16466236 | 16466343 | 16466236 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16466075 | 16466148 | 16466075 | ID=MS.gene08447.t1.exon12;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16466075 | 16466148 | 16466075 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16465225 | 16465350 | 16465225 | ID=MS.gene08447.t1.exon13;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16465225 | 16465350 | 16465225 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16465062 | 16465129 | 16465062 | ID=MS.gene08447.t1.exon14;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16465062 | 16465129 | 16465062 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16464437 | 16464586 | 16464437 | ID=MS.gene08447.t1.exon15;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16464437 | 16464586 | 16464437 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16464308 | 16464358 | 16464308 | ID=MS.gene08447.t1.exon16;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16464308 | 16464358 | 16464308 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16463453 | 16463509 | 16463453 | ID=MS.gene08447.t1.exon17;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16463453 | 16463509 | 16463453 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16463184 | 16463333 | 16463184 | ID=MS.gene08447.t1.exon18;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16463184 | 16463333 | 16463184 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16462983 | 16463074 | 16462983 | ID=MS.gene08447.t1.exon19;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16462983 | 16463074 | 16462983 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16462786 | 16462895 | 16462786 | ID=MS.gene08447.t1.exon20;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16462786 | 16462895 | 16462786 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16462657 | 16462720 | 16462657 | ID=MS.gene08447.t1.exon21;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16462657 | 16462720 | 16462657 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| chr4.3 | exon | 16462423 | 16462567 | 16462423 | ID=MS.gene08447.t1.exon22;Parent=MS.gene08447.t1 |
| chr4.3 | CDS | 16462423 | 16462567 | 16462423 | ID=cds.MS.gene08447.t1;Parent=MS.gene08447.t1 |
| Gene Sequence |
| Protein sequence |
