Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09042.t1 | XP_013446555.1 | 97.3 | 849 | 23 | 0 | 1 | 849 | 1 | 849 | 0.00E+00 | 1704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09042.t1 | F4HTM3 | 64.0 | 852 | 298 | 6 | 1 | 846 | 1 | 849 | 0.0e+00 | 1133.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09042.t1 | A0A072TT32 | 97.3 | 849 | 23 | 0 | 1 | 849 | 1 | 849 | 0.0e+00 | 1704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene09042 | 0.826174 | 3.14E-54 | -1.69E-46 |
| MS.gene049418 | MS.gene09042 | 0.820681 | 6.03E-53 | -1.69E-46 |
| MS.gene051067 | MS.gene09042 | 0.825617 | 4.25E-54 | -1.69E-46 |
| MS.gene052032 | MS.gene09042 | 0.823659 | 1.23E-53 | -1.69E-46 |
| MS.gene052732 | MS.gene09042 | 0.810006 | 1.43E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene09042 | 0.84677 | 1.76E-59 | -1.69E-46 |
| MS.gene054584 | MS.gene09042 | 0.853507 | 2.28E-61 | -1.69E-46 |
| MS.gene055537 | MS.gene09042 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene056228 | MS.gene09042 | 0.806613 | 7.56E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene09042 | 0.83605 | 1.17E-56 | -1.69E-46 |
| MS.gene059154 | MS.gene09042 | 0.842254 | 2.89E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09043 | MS.gene09042 | PPI |
| MS.gene023402 | MS.gene09042 | PPI |
| MS.gene09201 | MS.gene09042 | PPI |
| MS.gene09198 | MS.gene09042 | PPI |
| MS.gene08447 | MS.gene09042 | PPI |
| MS.gene09042 | MS.gene023402 | PPI |
| MS.gene023400 | MS.gene09042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09042.t1 | MTR_8g080360 | 97.291 | 849 | 23 | 0 | 1 | 849 | 1 | 849 | 0.0 | 1716 |
| MS.gene09042.t1 | MTR_8g080290 | 78.235 | 850 | 175 | 3 | 1 | 849 | 1 | 841 | 0.0 | 1373 |
| MS.gene09042.t1 | MTR_8g080290 | 81.148 | 732 | 133 | 1 | 118 | 849 | 38 | 764 | 0.0 | 1259 |
| MS.gene09042.t1 | MTR_8g080290 | 78.150 | 746 | 153 | 3 | 1 | 745 | 1 | 737 | 0.0 | 1192 |
| MS.gene09042.t1 | MTR_8g080290 | 76.763 | 723 | 158 | 3 | 1 | 722 | 1 | 714 | 0.0 | 1135 |
| MS.gene09042.t1 | MTR_8g080290 | 80.744 | 618 | 114 | 1 | 232 | 849 | 14 | 626 | 0.0 | 1059 |
| MS.gene09042.t1 | MTR_8g080290 | 77.414 | 580 | 126 | 2 | 1 | 579 | 1 | 576 | 0.0 | 913 |
| MS.gene09042.t1 | MTR_8g080290 | 77.509 | 578 | 125 | 2 | 1 | 577 | 1 | 574 | 0.0 | 911 |
| MS.gene09042.t1 | MTR_8g080290 | 74.461 | 603 | 126 | 3 | 1 | 579 | 1 | 599 | 0.0 | 899 |
| MS.gene09042.t1 | MTR_8g080290 | 77.437 | 554 | 120 | 2 | 1 | 553 | 1 | 550 | 0.0 | 868 |
| MS.gene09042.t1 | MTR_8g080290 | 78.168 | 513 | 107 | 2 | 1 | 512 | 1 | 509 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09042.t1 | AT1G67490 | 63.775 | 853 | 298 | 6 | 1 | 846 | 1 | 849 | 0.0 | 1127 |
| MS.gene09042.t1 | AT1G24320 | 60.233 | 772 | 304 | 2 | 76 | 846 | 17 | 786 | 0.0 | 999 |
| MS.gene09042.t1 | AT1G24320 | 58.420 | 772 | 287 | 4 | 76 | 846 | 17 | 755 | 0.0 | 953 |
| MS.gene09042.t1 | AT1G67490 | 65.030 | 672 | 233 | 2 | 176 | 846 | 95 | 765 | 0.0 | 923 |
| MS.gene09042.t1 | AT1G67490 | 46.457 | 127 | 60 | 4 | 1 | 121 | 1 | 125 | 1.30e-21 | 101 |
Find 200 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGGTGCTTACTTTGATTT+TGG | 0.126160 | 4.2:-14596313 | MS.gene09042:CDS |
| AAGCATAATGGGCGTGATTA+TGG | 0.169937 | 4.2:-14603810 | MS.gene09042:CDS |
| TCTAAGTGGAATGAAGAATT+TGG | 0.191114 | 4.2:-14603491 | MS.gene09042:CDS |
| CATGCTAGGTTCAACTAAAA+TGG | 0.226231 | 4.2:-14596160 | MS.gene09042:intron |
| AACTTCATGGTGCAGATTAT+TGG | 0.230441 | 4.2:-14600637 | MS.gene09042:intron |
| AATTGAGAAGCAATTTAATT+AGG | 0.251118 | 4.2:-14595497 | MS.gene09042:intron |
| TCTTTCCAAGAGGATTTCTA+TGG | 0.258921 | 4.2:-14599396 | MS.gene09042:CDS |
| GCTGCTATTGGAAGCTTATT+AGG | 0.260592 | 4.2:-14600020 | MS.gene09042:CDS |
| TTTCAAATAACAGCCTCTTA+TGG | 0.264048 | 4.2:-14595859 | MS.gene09042:CDS |
| CTAATATCAGGAACTGATTC+TGG | 0.266719 | 4.2:-14600586 | MS.gene09042:CDS |
| TTCTTTATATTTCAGTTCAT+TGG | 0.273350 | 4.2:+14600312 | None:intergenic |
| GATCTGAAAGTGCATTATTC+TGG | 0.275856 | 4.2:-14601733 | MS.gene09042:CDS |
| AGTGATGTCCAACCCGTAAA+TGG | 0.275954 | 4.2:+14595305 | None:intergenic |
| GCATAAGGAGAGTTTGTATT+GGG | 0.295563 | 4.2:-14604321 | MS.gene09042:CDS |
| CATTTAGGGATCATGGATTC+TGG | 0.296093 | 4.2:-14595900 | MS.gene09042:intron |
| GGCGGCATCGGTTACTTCTA+TGG | 0.300623 | 4.2:-14599999 | MS.gene09042:CDS |
| CAATTCTGTGTATATAGCTT+TGG | 0.304551 | 4.2:+14595515 | None:intergenic |
| GAGCGCATCCATAGTCTTAC+AGG | 0.314982 | 4.2:-14600547 | MS.gene09042:intron |
| TGTTAGTCTGTTCCCATTCA+TGG | 0.316927 | 4.2:-14596042 | MS.gene09042:CDS |
| CGGCCTTCCTTCACCGGCAT+CGG | 0.321994 | 4.2:+14604643 | None:intergenic |
| AATGAAATGATGCAGAATTA+TGG | 0.324437 | 4.2:-14597201 | MS.gene09042:intron |
| ATGCTTCTCGTCAGCTTGTC+CGG | 0.328392 | 4.2:-14596112 | MS.gene09042:CDS |
| CTAGGTTGTAGACCTTGTTT+TGG | 0.335750 | 4.2:+14595811 | None:intergenic |
| GCTTCCAATAGCAGCTTTAC+CGG | 0.337721 | 4.2:+14600028 | None:intergenic |
| CAAATGGGACCTCTCCAATA+TGG | 0.338192 | 4.2:+14595677 | None:intergenic |
| AAAAGGAGCACGTCCATTTA+CGG | 0.345194 | 4.2:-14595318 | MS.gene09042:CDS |
| TTCTCGGGGCTGAAGCATTA+AGG | 0.351385 | 4.2:-14599080 | MS.gene09042:intron |
| GTAATTCATGTTTATCCAAA+TGG | 0.351539 | 4.2:+14595661 | None:intergenic |
| TCCTTCACCGGCATCGGGTT+CGG | 0.351713 | 4.2:+14604649 | None:intergenic |
| CTGATTGAGGTCCATGATCT+TGG | 0.358556 | 4.2:+14604433 | None:intergenic |
| AGCATAATGGGCGTGATTAT+GGG | 0.360075 | 4.2:-14603809 | MS.gene09042:CDS |
| GAGCAGTACGATCAGATTAA+AGG | 0.363593 | 4.2:-14595347 | MS.gene09042:CDS |
| GAGGATGACTTAAGTACTTA+TGG | 0.363795 | 4.2:-14603840 | MS.gene09042:CDS |
| CGTATTTCGTTGGATATCAT+TGG | 0.366288 | 4.2:-14599153 | MS.gene09042:CDS |
| GCTTTGGCTTTGTTCCGATA+TGG | 0.366506 | 4.2:+14595531 | None:intergenic |
| CCTCTGCGGCGGTTAAATTT+CGG | 0.369400 | 4.2:+14604623 | None:intergenic |
| CAGGACCCCACAATCTTTGA+TGG | 0.370740 | 4.2:-14603925 | MS.gene09042:CDS |
| AAGGCTGATGACAGTGGTTA+TGG | 0.376069 | 4.2:-14603732 | MS.gene09042:CDS |
| GTTGGAGGATTTCCATTTGT+TGG | 0.377253 | 4.2:+14598940 | None:intergenic |
| AGCGGCAGTTCCTCCGCTTC+CGG | 0.379274 | 4.2:+14604694 | None:intergenic |
| ACTGTCTCATTTAGGGATCA+TGG | 0.381195 | 4.2:-14595907 | MS.gene09042:intron |
| TGCTGAGGAACAAATTCATC+TGG | 0.382600 | 4.2:+14598964 | None:intergenic |
| CTGAGCATGATCCTCCATAT+TGG | 0.385445 | 4.2:-14595691 | MS.gene09042:CDS |
| AGCCTCTTATGGACTGACTA+TGG | 0.386485 | 4.2:-14595848 | MS.gene09042:CDS |
| CATATTGGAGAGGTCCCATT+TGG | 0.388396 | 4.2:-14595676 | MS.gene09042:CDS |
| ACTAAAGTAACTTACATTAA+GGG | 0.390291 | 4.2:+14599950 | None:intergenic |
| CTAAGTGGAATGAAGAATTT+GGG | 0.391676 | 4.2:-14603490 | MS.gene09042:CDS |
| CTGGCTCTCGATCAGACATT+GGG | 0.393178 | 4.2:-14603367 | MS.gene09042:CDS |
| ACAGATATTGTGCTAATATC+AGG | 0.395508 | 4.2:-14600598 | MS.gene09042:CDS |
| GTTAGTCTGTTCCCATTCAT+GGG | 0.400749 | 4.2:-14596041 | MS.gene09042:CDS |
| GAGAGTTCTTTACTTGCATC+TGG | 0.401082 | 4.2:-14603386 | MS.gene09042:CDS |
| ATGTTGATTATGTATCATAT+TGG | 0.405233 | 4.2:-14599456 | MS.gene09042:CDS |
| AAAGGAGCACGTCCATTTAC+GGG | 0.417891 | 4.2:-14595317 | MS.gene09042:CDS |
| TTTATCCAACAACTTCTCAA+TGG | 0.419671 | 4.2:+14597305 | None:intergenic |
| TTAGATTTGATGAACGTTGA+TGG | 0.422257 | 4.2:-14599123 | MS.gene09042:CDS |
| GCATTCCATTGAGAAGTTGT+TGG | 0.425110 | 4.2:-14597310 | MS.gene09042:CDS |
| GAAGAGGCCTGTATTAAGAT+TGG | 0.426147 | 4.2:-14596081 | MS.gene09042:CDS |
| ATGATCTTGGGCGCGGGAAG+CGG | 0.431417 | 4.2:+14604446 | None:intergenic |
| GGCCTTCCTTCACCGGCATC+GGG | 0.432102 | 4.2:+14604644 | None:intergenic |
| TAATTCATGTTTATCCAAAT+GGG | 0.433787 | 4.2:+14595662 | None:intergenic |
| CAAGATCATGGACCTCAATC+AGG | 0.435051 | 4.2:-14604432 | MS.gene09042:intron |
| GTTCCTCAGCATCCAACAAA+TGG | 0.437876 | 4.2:-14598952 | MS.gene09042:CDS |
| CAGTGGTTATGGAGGGGACT+GGG | 0.443295 | 4.2:-14603721 | MS.gene09042:CDS |
| CCTTTGTTCGATTGGAAGCA+TGG | 0.445256 | 4.2:-14598101 | MS.gene09042:CDS |
| CAGATTAAAGGCAAGGGAAA+AGG | 0.447431 | 4.2:-14595335 | MS.gene09042:CDS |
| AGCAGCTTTACCGGCAGAAA+CGG | 0.448450 | 4.2:+14600037 | None:intergenic |
| AAATTTCGGCCTTCCTTCAC+CGG | 0.450484 | 4.2:+14604637 | None:intergenic |
| TGCTTCTCGTCAGCTTGTCC+GGG | 0.451163 | 4.2:-14596111 | MS.gene09042:CDS |
| TCTGCCGGTAAAGCTGCTAT+TGG | 0.453004 | 4.2:-14600032 | MS.gene09042:CDS |
| ATGAACATTAATCAGGCGTT+GGG | 0.460197 | 4.2:-14599181 | MS.gene09042:intron |
| ACCCCACAATCTTTGATGGC+TGG | 0.462248 | 4.2:-14603921 | MS.gene09042:CDS |
| GCTTCCCGCGCCCAAGATCA+TGG | 0.464450 | 4.2:-14604444 | MS.gene09042:CDS |
| TCTATCTCGGAATTCGTGCC+AGG | 0.464769 | 4.2:-14604280 | MS.gene09042:intron |
| CGCAGAGGAAGAAGCAAATA+CGG | 0.467488 | 4.2:-14604608 | MS.gene09042:CDS |
| ATGCTGACATTGTCGAATAA+CGG | 0.468313 | 4.2:+14604575 | None:intergenic |
| TTGCAGAGAATGGACCATAT+CGG | 0.469182 | 4.2:-14595545 | MS.gene09042:intron |
| AGAGCGCTCCTTTGTTCGAT+TGG | 0.469878 | 4.2:-14598109 | MS.gene09042:CDS |
| TGAACTGAAATATAAAGAAC+AGG | 0.471940 | 4.2:-14600308 | MS.gene09042:CDS |
| AGAGGATTTCTATGGGATGA+AGG | 0.475581 | 4.2:-14599388 | MS.gene09042:CDS |
| GGAATGATTCTCCCCATGAA+TGG | 0.477630 | 4.2:+14596029 | None:intergenic |
| GTCCATAGTCAGTCCATAAG+AGG | 0.478491 | 4.2:+14595846 | None:intergenic |
| GCACTCCACCATTATTCAAA+AGG | 0.478741 | 4.2:-14595626 | MS.gene09042:intron |
| AGATGTAAGTAGAGAAAACT+TGG | 0.479345 | 4.2:-14603417 | MS.gene09042:CDS |
| TACCACGTGAACAAATTCTC+GGG | 0.480490 | 4.2:-14599095 | MS.gene09042:CDS |
| CCGTTAGAAATGACCGGAAG+CGG | 0.480542 | 4.2:-14604707 | None:intergenic |
| ATCGAACAAAGGAGCGCTCT+AGG | 0.483874 | 4.2:+14598112 | None:intergenic |
| AGTGTTGCGTTTCATGTACA+TGG | 0.488468 | 4.2:+14595712 | None:intergenic |
| AGCATAAGGAGAGTTTGTAT+TGG | 0.489664 | 4.2:-14604322 | MS.gene09042:CDS |
| TGATTGAGGTCCATGATCTT+GGG | 0.489721 | 4.2:+14604434 | None:intergenic |
| TTGGGATATTCGTATTTCGT+TGG | 0.489807 | 4.2:-14599163 | MS.gene09042:CDS |
| TGAGGAACCAATCTTAATAC+AGG | 0.491235 | 4.2:+14596074 | None:intergenic |
| CGTTGGATATCATTGGTCAC+TGG | 0.492407 | 4.2:-14599146 | MS.gene09042:CDS |
| ATGGCTGGATTAATGTGGAT+TGG | 0.494273 | 4.2:-14603906 | MS.gene09042:CDS |
| TTCATGGTGCAGATTATTGG+TGG | 0.497097 | 4.2:-14600634 | MS.gene09042:intron |
| TTAATCATGGCAGAAGCATA+TGG | 0.497563 | 4.2:-14595275 | MS.gene09042:CDS |
| TCACTGTTGTCGCAGTTTCA+AGG | 0.497693 | 4.2:-14604347 | MS.gene09042:intron |
| GAATGATTCTCCCCATGAAT+GGG | 0.498618 | 4.2:+14596030 | None:intergenic |
| AACAAATGAGCAGCTACTAC+TGG | 0.499573 | 4.2:-14597952 | MS.gene09042:CDS |
| TGGTTCAATACAACTCAGTC+AGG | 0.504158 | 4.2:-14598072 | MS.gene09042:intron |
| CAATTTGTCTGATCTTGTTG+AGG | 0.509858 | 4.2:-14601689 | MS.gene09042:CDS |
| ATGACTTAAGTACTTATGGT+TGG | 0.510296 | 4.2:-14603836 | MS.gene09042:CDS |
| AAGTGGCGTTCATCTTCACT+TGG | 0.510451 | 4.2:+14597372 | None:intergenic |
| CTCGATCAGACATTGGGGAT+TGG | 0.511552 | 4.2:-14603361 | MS.gene09042:CDS |
| TCTGGCTCTCGATCAGACAT+TGG | 0.511869 | 4.2:-14603368 | MS.gene09042:CDS |
| TGCCGTGGTCAACGAGTACT+TGG | 0.515945 | 4.2:+14603784 | None:intergenic |
| ATCACTTGTAGTATTAATCA+TGG | 0.516772 | 4.2:-14595288 | MS.gene09042:CDS |
| AAATGGAAAGAGATGGAGAC+TGG | 0.521161 | 4.2:-14596143 | MS.gene09042:CDS |
| GCAGTTTCAAGGTGAGCATA+AGG | 0.522494 | 4.2:-14604336 | MS.gene09042:intron |
| TCATCCCATAGAAATCCTCT+TGG | 0.523691 | 4.2:+14599391 | None:intergenic |
| GCCACTTGGATCTTAGATGC+TGG | 0.526504 | 4.2:-14597356 | MS.gene09042:CDS |
| ACTGAGTTGTATTGAACCAT+TGG | 0.527811 | 4.2:+14598076 | None:intergenic |
| ATACCACGTGAACAAATTCT+CGG | 0.530402 | 4.2:-14599096 | MS.gene09042:CDS |
| TTTCCATTTGTTGGATGCTG+AGG | 0.531081 | 4.2:+14598949 | None:intergenic |
| CTTTCCAAGAGGATTTCTAT+GGG | 0.532235 | 4.2:-14599395 | MS.gene09042:CDS |
| GCAGCTACATTTAAAGTCCA+AGG | 0.534105 | 4.2:-14603339 | MS.gene09042:intron |
| GACTCAGAATCCGTTTCTGC+CGG | 0.539126 | 4.2:-14600047 | MS.gene09042:CDS |
| TAGGACATTACCACCTTCAT+CGG | 0.539199 | 4.2:+14603439 | None:intergenic |
| TCCGAACCCGATGCCGGTGA+AGG | 0.540127 | 4.2:-14604650 | MS.gene09042:CDS |
| GTACGTAACTATCAAGAGAC+TGG | 0.540165 | 4.2:-14595380 | MS.gene09042:CDS |
| GGAAGCTTATTAGGCGGCAT+CGG | 0.542443 | 4.2:-14600011 | MS.gene09042:CDS |
| ATTTGATGAACGTTGATGGA+TGG | 0.542797 | 4.2:-14599119 | MS.gene09042:CDS |
| ACAGCTGTATAAAGCTCAGC+AGG | 0.543265 | 4.2:+14599433 | None:intergenic |
| GAGGTCCATGATCTTGGGCG+CGG | 0.543291 | 4.2:+14604439 | None:intergenic |
| GATTGGAAGCATGGTTCCAA+TGG | 0.545438 | 4.2:-14598092 | MS.gene09042:CDS |
| AGACGAATCTTCTAACGTGT+TGG | 0.545858 | 4.2:-14601491 | MS.gene09042:CDS |
| AACCCGATGCCGGTGAAGGA+AGG | 0.546387 | 4.2:-14604646 | MS.gene09042:CDS |
| CGTCTAACCCCAGGTCTAAG+TGG | 0.546776 | 4.2:-14603505 | MS.gene09042:intron |
| AATCCAGCCATCAAAGATTG+TGG | 0.547945 | 4.2:+14603918 | None:intergenic |
| AGTTGAAGTTAACCTGATTG+AGG | 0.548260 | 4.2:+14604420 | None:intergenic |
| TCTTCCTCCGAACCCGATGC+CGG | 0.549933 | 4.2:-14604656 | MS.gene09042:CDS |
| TATCGTCCTCATCTCTATCT+CGG | 0.550443 | 4.2:-14604293 | MS.gene09042:CDS |
| GAATAATGAGTTCACTGCAA+AGG | 0.554341 | 4.2:-14598157 | MS.gene09042:CDS |
| TCAACTAAAATGGAAAGAGA+TGG | 0.559447 | 4.2:-14596150 | MS.gene09042:CDS |
| ACAGTGGTTATGGAGGGGAC+TGG | 0.560664 | 4.2:-14603722 | MS.gene09042:CDS |
| TTCTATTTGGCCGATGAAGG+TGG | 0.563608 | 4.2:-14603449 | MS.gene09042:CDS |
| ATCCAGCCATCAAAGATTGT+GGG | 0.564704 | 4.2:+14603919 | None:intergenic |
| TTCACCGGCATCGGGTTCGG+AGG | 0.566237 | 4.2:+14604652 | None:intergenic |
| AGGTCCATGATCTTGGGCGC+GGG | 0.568327 | 4.2:+14604440 | None:intergenic |
| GCCCCGAGAATTTGTTCACG+TGG | 0.571440 | 4.2:+14599093 | None:intergenic |
| CTTTGATGGCTGGATTAATG+TGG | 0.572681 | 4.2:-14603911 | MS.gene09042:CDS |
| TAAAGAAACCAGGCCTAGCA+AGG | 0.573688 | 4.2:-14597286 | MS.gene09042:intron |
| AAGTGAAGATGAACGCCACT+TGG | 0.574784 | 4.2:-14597370 | MS.gene09042:CDS |
| ATGAGCAGCTACTACTGGCA+TGG | 0.577502 | 4.2:-14597947 | MS.gene09042:CDS |
| TCACTTGGGTGCGAAGCACG+TGG | 0.577698 | 4.2:+14597387 | None:intergenic |
| AGCACAATATCTGTAGTGAA+AGG | 0.578409 | 4.2:+14600607 | None:intergenic |
| GACGATCCGTTAGAAATGAC+CGG | 0.581585 | 4.2:-14604713 | None:intergenic |
| TACGATCAGATTAAAGGCAA+GGG | 0.581634 | 4.2:-14595341 | MS.gene09042:CDS |
| GTACGATCAGATTAAAGGCA+AGG | 0.583444 | 4.2:-14595342 | MS.gene09042:CDS |
| TACGTTCTCTTGCCAAAACA+AGG | 0.584541 | 4.2:-14595823 | MS.gene09042:intron |
| GCTGATGACAGTGGTTATGG+AGG | 0.586057 | 4.2:-14603729 | MS.gene09042:CDS |
| GAGCACGTCCATTTACGGGT+TGG | 0.587130 | 4.2:-14595313 | MS.gene09042:CDS |
| TTAAGATTGGTTCCTCACAT+TGG | 0.590145 | 4.2:-14596068 | MS.gene09042:CDS |
| CTGATGACAGTGGTTATGGA+GGG | 0.596230 | 4.2:-14603728 | MS.gene09042:CDS |
| GTGGAATGAAGAATTTGGGA+GGG | 0.599051 | 4.2:-14603486 | MS.gene09042:CDS |
| CCGAAATTTAACCGCCGCAG+AGG | 0.601143 | 4.2:-14604623 | MS.gene09042:CDS |
| TGGAATGAAGAATTTGGGAG+GGG | 0.602311 | 4.2:-14603485 | MS.gene09042:CDS |
| TCAGACAAATTGTGAAAGTG+AGG | 0.606527 | 4.2:+14601700 | None:intergenic |
| GAAGCGGAGGAACTGCCGCT+CGG | 0.608400 | 4.2:-14604691 | MS.gene09042:CDS |
| CTTGGAAAGAAAGACCGACT+TGG | 0.608880 | 4.2:+14599409 | None:intergenic |
| TTAGAAATGACCGGAAGCGG+AGG | 0.610605 | 4.2:-14604704 | None:intergenic |
| AGTGGCGTTCATCTTCACTT+GGG | 0.610982 | 4.2:+14597373 | None:intergenic |
| ATGTGGATTGGTGTGAAGGA+CGG | 0.611545 | 4.2:-14603894 | MS.gene09042:CDS |
| GCTGAGGAACAAATTCATCT+GGG | 0.619449 | 4.2:+14598965 | None:intergenic |
| GGAAGCGGCGTAACAGCACG+AGG | 0.620197 | 4.2:+14604461 | None:intergenic |
| CCATGCTTCCAATCGAACAA+AGG | 0.623110 | 4.2:+14598101 | None:intergenic |
| CACTTGGGTGCGAAGCACGT+GGG | 0.624468 | 4.2:+14597388 | None:intergenic |
| AAATCAAAGGCTGATGACAG+TGG | 0.625273 | 4.2:-14603738 | MS.gene09042:CDS |
| CAGGCCTCTTCGAAACATCC+CGG | 0.626034 | 4.2:+14596093 | None:intergenic |
| AGATCATGAGTTACTGAACC+AGG | 0.626651 | 4.2:-14597157 | MS.gene09042:intron |
| TTTCAGTTCATTGGACAGTG+AGG | 0.628639 | 4.2:+14600321 | None:intergenic |
| TGATGACAGTGGTTATGGAG+GGG | 0.631421 | 4.2:-14603727 | MS.gene09042:CDS |
| TGATTCTGGAAGTTCAAGAG+TGG | 0.632788 | 4.2:-14600572 | MS.gene09042:CDS |
| TTTATACAGCTGTACCAAGT+CGG | 0.636809 | 4.2:-14599423 | MS.gene09042:CDS |
| AATGCGTGAATTAAATCCCA+AGG | 0.639348 | 4.2:-14597909 | MS.gene09042:intron |
| ATTAATGTGGATTGGTGTGA+AGG | 0.642346 | 4.2:-14603898 | MS.gene09042:CDS |
| ATTTGCTTCTTCCTCTGCGG+CGG | 0.643871 | 4.2:+14604612 | None:intergenic |
| TCCAGCCATCAAAGATTGTG+GGG | 0.645163 | 4.2:+14603920 | None:intergenic |
| AGTCGGTCTTTCTTTCCAAG+AGG | 0.645169 | 4.2:-14599406 | MS.gene09042:CDS |
| TTGTCCGGGATGTTTCGAAG+AGG | 0.654001 | 4.2:-14596097 | MS.gene09042:CDS |
| TTAGTCTGTTCCCATTCATG+GGG | 0.654303 | 4.2:-14596040 | MS.gene09042:CDS |
| GCTATTGGAAGCTTATTAGG+CGG | 0.654543 | 4.2:-14600017 | MS.gene09042:CDS |
| ATGGGACCTCTCCAATATGG+AGG | 0.660961 | 4.2:+14595680 | None:intergenic |
| CATAAGGAGAGTTTGTATTG+GGG | 0.664455 | 4.2:-14604320 | MS.gene09042:CDS |
| CAGTAGTCAAGATGATGCCG+TGG | 0.665541 | 4.2:+14603769 | None:intergenic |
| AGTTGTTGGATAAAGAAACC+AGG | 0.668969 | 4.2:-14597296 | MS.gene09042:CDS |
| TGGCTCTCGATCAGACATTG+GGG | 0.670107 | 4.2:-14603366 | MS.gene09042:CDS |
| CGTATTTGCTTCTTCCTCTG+CGG | 0.675869 | 4.2:+14604609 | None:intergenic |
| CATGATCCTCCATATTGGAG+AGG | 0.676723 | 4.2:-14595686 | MS.gene09042:CDS |
| AGACTAACATAACCAATGTG+AGG | 0.681050 | 4.2:+14596056 | None:intergenic |
| TGGGTAATCATCTAATCCAG+AGG | 0.682487 | 4.2:+14597407 | None:intergenic |
| AGTGGAATGAAGAATTTGGG+AGG | 0.684032 | 4.2:-14603487 | MS.gene09042:CDS |
| CACCAAGTACTCGTTGACCA+CGG | 0.684927 | 4.2:-14603786 | MS.gene09042:CDS |
| CGAATTCCGAGATAGAGATG+AGG | 0.685066 | 4.2:+14604287 | None:intergenic |
| ACCACGTGAACAAATTCTCG+GGG | 0.694043 | 4.2:-14599094 | MS.gene09042:CDS |
| GTAACAGCACGAGGAAGACG+AGG | 0.696338 | 4.2:+14604470 | None:intergenic |
| AGGAAGACGAGGTTCAGCAA+CGG | 0.703556 | 4.2:+14604481 | None:intergenic |
| TCCAGCATCTAAGATCCAAG+TGG | 0.704184 | 4.2:+14597355 | None:intergenic |
| GAGGCATGTTTGTAGACACG+AGG | 0.704448 | 4.2:-14603859 | MS.gene09042:CDS |
| AGGACGGTAGATATCACTTG+AGG | 0.704516 | 4.2:-14603878 | MS.gene09042:CDS |
| AGATCTGACTCTGCTCCGAG+CGG | 0.726113 | 4.2:+14604676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 14595265 | 14604720 | 14595265 | ID=MS.gene09042 |
| chr4.2 | mRNA | 14595265 | 14604720 | 14595265 | ID=MS.gene09042.t1;Parent=MS.gene09042 |
| chr4.2 | exon | 14604433 | 14604720 | 14604433 | ID=MS.gene09042.t1.exon1;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14604433 | 14604720 | 14604433 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14604281 | 14604354 | 14604281 | ID=MS.gene09042.t1.exon2;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14604281 | 14604354 | 14604281 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14603693 | 14603944 | 14603693 | ID=MS.gene09042.t1.exon3;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14603693 | 14603944 | 14603693 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14603340 | 14603514 | 14603340 | ID=MS.gene09042.t1.exon4;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14603340 | 14603514 | 14603340 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14601672 | 14601758 | 14601672 | ID=MS.gene09042.t1.exon5;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14601672 | 14601758 | 14601672 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14601483 | 14601551 | 14601483 | ID=MS.gene09042.t1.exon6;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14601483 | 14601551 | 14601483 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14600548 | 14600644 | 14600548 | ID=MS.gene09042.t1.exon7;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14600548 | 14600644 | 14600548 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14600264 | 14600346 | 14600264 | ID=MS.gene09042.t1.exon8;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14600264 | 14600346 | 14600264 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14599965 | 14600072 | 14599965 | ID=MS.gene09042.t1.exon9;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14599965 | 14600072 | 14599965 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14599367 | 14599488 | 14599367 | ID=MS.gene09042.t1.exon10;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14599367 | 14599488 | 14599367 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14599081 | 14599188 | 14599081 | ID=MS.gene09042.t1.exon11;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14599081 | 14599188 | 14599081 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14598920 | 14598993 | 14598920 | ID=MS.gene09042.t1.exon12;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14598920 | 14598993 | 14598920 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14598073 | 14598198 | 14598073 | ID=MS.gene09042.t1.exon13;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14598073 | 14598198 | 14598073 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14597910 | 14597977 | 14597910 | ID=MS.gene09042.t1.exon14;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14597910 | 14597977 | 14597910 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14597287 | 14597436 | 14597287 | ID=MS.gene09042.t1.exon15;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14597287 | 14597436 | 14597287 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14597158 | 14597208 | 14597158 | ID=MS.gene09042.t1.exon16;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14597158 | 14597208 | 14597158 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14596297 | 14596353 | 14596297 | ID=MS.gene09042.t1.exon17;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14596297 | 14596353 | 14596297 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14596025 | 14596174 | 14596025 | ID=MS.gene09042.t1.exon18;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14596025 | 14596174 | 14596025 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14595824 | 14595915 | 14595824 | ID=MS.gene09042.t1.exon19;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14595824 | 14595915 | 14595824 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14595627 | 14595736 | 14595627 | ID=MS.gene09042.t1.exon20;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14595627 | 14595736 | 14595627 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14595498 | 14595561 | 14595498 | ID=MS.gene09042.t1.exon21;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14595498 | 14595561 | 14595498 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| chr4.2 | exon | 14595265 | 14595409 | 14595265 | ID=MS.gene09042.t1.exon22;Parent=MS.gene09042.t1 |
| chr4.2 | CDS | 14595265 | 14595409 | 14595265 | ID=cds.MS.gene09042.t1;Parent=MS.gene09042.t1 |
| Gene Sequence |
| Protein sequence |
