Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09198.t1 | XP_013446541.1 | 94.5 | 758 | 37 | 1 | 1 | 758 | 89 | 841 | 0.00E+00 | 1481.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09198.t1 | F4HTM3 | 63.7 | 758 | 272 | 2 | 1 | 757 | 96 | 851 | 3.4e-303 | 1042.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09198.t1 | A0A072TUN9 | 94.5 | 758 | 37 | 1 | 1 | 758 | 89 | 841 | 0.0e+00 | 1481.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023400 | MS.gene09198 | PPI |
| MS.gene09201 | MS.gene09198 | PPI |
| MS.gene09198 | MS.gene09043 | PPI |
| MS.gene09198 | MS.gene09042 | PPI |
| MS.gene08447 | MS.gene09198 | PPI |
| MS.gene09198 | MS.gene023402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09198.t1 | MTR_8g080290 | 96.438 | 758 | 22 | 1 | 1 | 758 | 89 | 841 | 0.0 | 1521 |
| MS.gene09198.t1 | MTR_8g080290 | 95.902 | 732 | 25 | 1 | 27 | 758 | 38 | 764 | 0.0 | 1454 |
| MS.gene09198.t1 | MTR_8g080360 | 82.058 | 758 | 136 | 0 | 1 | 758 | 92 | 849 | 0.0 | 1326 |
| MS.gene09198.t1 | MTR_8g080290 | 95.872 | 654 | 22 | 1 | 1 | 654 | 89 | 737 | 0.0 | 1299 |
| MS.gene09198.t1 | MTR_8g080290 | 94.770 | 631 | 28 | 1 | 1 | 631 | 89 | 714 | 0.0 | 1239 |
| MS.gene09198.t1 | MTR_8g080290 | 96.278 | 618 | 18 | 1 | 141 | 758 | 14 | 626 | 0.0 | 1233 |
| MS.gene09198.t1 | MTR_8g080290 | 96.721 | 488 | 16 | 0 | 1 | 488 | 89 | 576 | 0.0 | 988 |
| MS.gene09198.t1 | MTR_8g080290 | 96.914 | 486 | 15 | 0 | 1 | 486 | 89 | 574 | 0.0 | 985 |
| MS.gene09198.t1 | MTR_8g080290 | 92.368 | 511 | 16 | 1 | 1 | 488 | 89 | 599 | 0.0 | 976 |
| MS.gene09198.t1 | MTR_8g080290 | 95.887 | 462 | 19 | 0 | 1 | 462 | 89 | 550 | 0.0 | 925 |
| MS.gene09198.t1 | MTR_8g080290 | 96.445 | 422 | 15 | 0 | 1 | 422 | 89 | 510 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09198.t1 | AT1G67490 | 63.636 | 759 | 273 | 2 | 1 | 758 | 96 | 852 | 0.0 | 1033 |
| MS.gene09198.t1 | AT1G24320 | 59.157 | 759 | 305 | 3 | 2 | 758 | 34 | 789 | 0.0 | 962 |
| MS.gene09198.t1 | AT1G24320 | 56.992 | 758 | 292 | 4 | 2 | 758 | 34 | 758 | 0.0 | 916 |
| MS.gene09198.t1 | AT1G67490 | 63.313 | 646 | 236 | 1 | 114 | 758 | 123 | 768 | 0.0 | 877 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGAGCATACTTTGATTT+TGG | 0.139382 | 4.2:-14864775 | MS.gene09198:CDS |
| GCTGCTGTTGGAAGCTTATT+AGG | 0.208927 | 4.2:-14869427 | MS.gene09198:CDS |
| AAGCATAATGGACGTGATTA+TGG | 0.222490 | 4.2:-14874737 | MS.gene09198:CDS |
| TTTCAAATCGCAGCCTATTA+TGG | 0.223778 | 4.2:-14864177 | MS.gene09198:CDS |
| CAAGCTAGGTTCAACTTAAA+TGG | 0.233898 | 4.2:-14864624 | MS.gene09198:intron |
| CCAGCTTGTCCGGGAAGTTT+TGG | 0.237094 | 4.2:-14864566 | MS.gene09198:CDS |
| AATTGAGGAGCAATTTAATT+AGG | 0.244298 | 4.2:-14863786 | MS.gene09198:intron |
| TACTTCATGCTGCAGATTAT+TGG | 0.247768 | 4.2:-14871568 | MS.gene09198:intron |
| TTGAAGTTGGTTCCTCAAAT+TGG | 0.257528 | 4.2:-14864532 | MS.gene09198:CDS |
| CATATTGGAGAGGTACAATT+TGG | 0.259206 | 4.2:-14863969 | MS.gene09198:CDS |
| GTTGATGTCCAACCCGTAAA+TGG | 0.274758 | 4.2:+14863604 | None:intergenic |
| GGTGGCATTGGTTACTTCTA+TGG | 0.288431 | 4.2:-14869406 | MS.gene09198:CDS |
| AATGAAATGATGCAGAATTA+TGG | 0.299969 | 4.2:-14865601 | MS.gene09198:intron |
| CATTGAAGAGTTGTTGAATA+AGG | 0.303329 | 4.2:-14865706 | MS.gene09198:CDS |
| GCATAAGGAAAGTTTGTATT+GGG | 0.307657 | 4.2:-14875799 | MS.gene09198:CDS |
| TGTTAATTTCTTCCCATTCA+TGG | 0.324538 | 4.2:-14864506 | MS.gene09198:CDS |
| CAAATTGTACCTCTCCAATA+TGG | 0.336633 | 4.2:+14863970 | None:intergenic |
| ATGTGACTCGCCAGCTTGTC+CGG | 0.344079 | 4.2:-14864576 | MS.gene09198:CDS |
| CATATTTCATTGGATATCAT+TGG | 0.349159 | 4.2:-14867909 | MS.gene09198:CDS |
| AAGCGCGTCAATAGTCTTAC+AGG | 0.349761 | 4.2:-14871478 | MS.gene09198:intron |
| GGAAGCATATGACATAATTT+AGG | 0.350954 | 4.2:-14863563 | None:intergenic |
| CTTATTCAACAACTCTTCAA+TGG | 0.352319 | 4.2:+14865707 | None:intergenic |
| AAAAGGAGCACATCCATTTA+CGG | 0.360143 | 4.2:-14863617 | MS.gene09198:CDS |
| GAGGATGCCTTAAGTGCTTA+TGG | 0.362574 | 4.2:-14874767 | MS.gene09198:CDS |
| GATACCACGAGAACAAATTC+TGG | 0.365935 | 4.2:-14867853 | MS.gene09198:CDS |
| CTGTTCCTGGAGCGTGCCTT+TGG | 0.366312 | 4.2:-14867018 | MS.gene09198:CDS |
| CGGGCTTCTCCAAAACTTCC+CGG | 0.366351 | 4.2:+14864557 | None:intergenic |
| TTGAGGAACCAACTTCAATT+CGG | 0.369453 | 4.2:+14864537 | None:intergenic |
| TTGGGATATTCATATTTCAT+TGG | 0.377449 | 4.2:-14867919 | MS.gene09198:CDS |
| AAGTGAGATCTCTCTGTTCC+TGG | 0.379172 | 4.2:-14867031 | MS.gene09198:CDS |
| GGGGAAAGCAGTGGTTATGG+TGG | 0.381635 | 4.2:-14874656 | MS.gene09198:CDS |
| CTAAGTGGAATGAGGACTTT+GGG | 0.382310 | 4.2:-14874400 | MS.gene09198:CDS |
| ATGCTGCTTATATATCATAT+TGG | 0.387954 | 4.2:-14868231 | MS.gene09198:CDS |
| CAGTGGTTATGGTGGGGATT+GGG | 0.390163 | 4.2:-14874648 | MS.gene09198:CDS |
| TGAGGAACCAACTTCAATTC+GGG | 0.397917 | 4.2:+14864538 | None:intergenic |
| CACTTCCAGACGCTGACCTC+TGG | 0.399520 | 4.2:-14865825 | MS.gene09198:intron |
| CCATTTGGATCTTAGATGTT+GGG | 0.403358 | 4.2:-14865757 | MS.gene09198:CDS |
| CAGGACTCCACAATCTTTGA+TGG | 0.403931 | 4.2:-14874852 | MS.gene09198:CDS |
| GTCCGTAGTCAGTCCATAAT+AGG | 0.406256 | 4.2:+14864164 | None:intergenic |
| GAGAGTTCGTTACTTGCATC+TGG | 0.407973 | 4.2:-14874296 | MS.gene09198:CDS |
| AGCATAATGGACGTGATTAT+GGG | 0.410264 | 4.2:-14874736 | MS.gene09198:CDS |
| TGCTGAGGAACATACTCCTC+TGG | 0.413213 | 4.2:+14867719 | None:intergenic |
| TGTCCAACCATAAGCACTTA+AGG | 0.414356 | 4.2:+14874760 | None:intergenic |
| TGTAGACTGAGACCTTGTTT+TGG | 0.415661 | 4.2:+14864129 | None:intergenic |
| TCAATGTTGTTGCAGTTTCA+AGG | 0.416153 | 4.2:-14875825 | MS.gene09198:intron |
| TTAGATTTGATGAACATTGA+TGG | 0.416706 | 4.2:-14867879 | MS.gene09198:CDS |
| AGCATAAGGAAAGTTTGTAT+TGG | 0.416961 | 4.2:-14875800 | MS.gene09198:CDS |
| AAGTTCAGATGAACGCCATT+TGG | 0.417413 | 4.2:-14865772 | MS.gene09198:CDS |
| GTTAATTTCTTCCCATTCAT+GGG | 0.417489 | 4.2:-14864505 | MS.gene09198:CDS |
| TGTGAAATTGCTATCAGATC+TGG | 0.421036 | 4.2:-14865572 | MS.gene09198:CDS |
| GTTGGAGGATTTCCATTTGT+TGG | 0.424166 | 4.2:+14867695 | None:intergenic |
| CAGAACATGAGGCTCCATAT+TGG | 0.430301 | 4.2:-14863984 | MS.gene09198:CDS |
| TTCTTTATATTTCAGTTCAT+CGG | 0.437648 | 4.2:+14869650 | None:intergenic |
| AAAGGAGCACATCCATTTAC+GGG | 0.442785 | 4.2:-14863616 | MS.gene09198:CDS |
| TATGGTTGGACAAAGCATAA+TGG | 0.446338 | 4.2:-14874749 | MS.gene09198:CDS |
| AAATGGCGTTCATCTGAACT+TGG | 0.447337 | 4.2:+14865774 | None:intergenic |
| TCTAAGTGGAATGAGGACTT+TGG | 0.447476 | 4.2:-14874401 | MS.gene09198:CDS |
| GTTCCTCAGCATCCAACAAA+TGG | 0.451082 | 4.2:-14867707 | MS.gene09198:CDS |
| CCATCTCATTCAAGGGATCA+TGG | 0.452756 | 4.2:-14864225 | MS.gene09198:intron |
| ACTGAGTTTCATTGTACCAT+TGG | 0.453158 | 4.2:+14866977 | None:intergenic |
| TTCATGCTGCAGATTATTGG+TGG | 0.453266 | 4.2:-14871565 | MS.gene09198:intron |
| GCAGTTTCAAGGTGAGCATA+AGG | 0.456902 | 4.2:-14875814 | MS.gene09198:intron |
| TAAGGAAACTAAACCTGAAA+AGG | 0.459839 | 4.2:-14865688 | MS.gene09198:intron |
| GCAGTGGTTATGGTGGGGAT+TGG | 0.460130 | 4.2:-14874649 | MS.gene09198:CDS |
| TCTATCTCGGAATTCGTGCC+AGG | 0.464769 | 4.2:-14875758 | MS.gene09198:intron |
| ACCAAGTTTATAAAATCAAA+GGG | 0.466045 | 4.2:-14874677 | MS.gene09198:CDS |
| GCTCCTCAATTCTTTGTACA+TGG | 0.466154 | 4.2:+14863798 | None:intergenic |
| CAGGTTAACGGCAAGGGAAA+AGG | 0.470162 | 4.2:-14863634 | MS.gene09198:CDS |
| ACTCCACAATCTTTGATGGC+TGG | 0.476566 | 4.2:-14874848 | MS.gene09198:CDS |
| GGAATGATTCTCCCCATGAA+TGG | 0.477220 | 4.2:+14864493 | None:intergenic |
| AACAGATGAGCAGTTACTAT+TGG | 0.480973 | 4.2:-14866879 | MS.gene09198:CDS |
| ATGGTGGGGATTGGGCAGTT+CGG | 0.481492 | 4.2:-14874640 | MS.gene09198:CDS |
| TGAGGAAAACCTTGCATCAC+AGG | 0.481579 | 4.2:-14872345 | MS.gene09198:intron |
| AGAATCCGTTTCTGTTGGTA+AGG | 0.490514 | 4.2:-14869449 | MS.gene09198:CDS |
| TGATTATGGGCATCAAGTAC+TGG | 0.496436 | 4.2:-14874723 | MS.gene09198:CDS |
| GAGCAGTACGATCAGGTTAA+CGG | 0.496540 | 4.2:-14863646 | MS.gene09198:CDS |
| GCCATTTGGATCTTAGATGT+TGG | 0.496786 | 4.2:-14865758 | MS.gene09198:CDS |
| GAATAATGAATTCAATGTGA+TGG | 0.497311 | 4.2:-14867058 | MS.gene09198:CDS |
| ATGCACATTAAGCAGGCGTT+GGG | 0.497460 | 4.2:-14867937 | MS.gene09198:intron |
| CCTTTGGTCGATTAGATGCA+TGG | 0.498690 | 4.2:-14867002 | MS.gene09198:CDS |
| TTTGTGGGAGCAGTACGATC+AGG | 0.500138 | 4.2:-14863653 | MS.gene09198:CDS |
| GGAGAATCATCTGATGAGTC+AGG | 0.500788 | 4.2:+14872146 | None:intergenic |
| GAATGATTCTCCCCATGAAT+GGG | 0.500873 | 4.2:+14864494 | None:intergenic |
| AAATTAACATAACCAATTTG+AGG | 0.501022 | 4.2:+14864520 | None:intergenic |
| GGAAAGCAGTGGTTATGGTG+GGG | 0.501090 | 4.2:-14874654 | MS.gene09198:CDS |
| AAAGATCATGGACCTTCCTC+AGG | 0.501146 | 4.2:-14875931 | None:intergenic |
| TACCAAGTTTATAAAATCAA+AGG | 0.501485 | 4.2:-14874678 | MS.gene09198:CDS |
| ATTCAAGGGATCATGGATCC+TGG | 0.504018 | 4.2:-14864218 | MS.gene09198:intron |
| GGAAGCTTATTAGGTGGCAT+TGG | 0.505261 | 4.2:-14869418 | MS.gene09198:CDS |
| TTCTGGGAGCTGAAGCACTA+AGG | 0.505458 | 4.2:-14867836 | MS.gene09198:intron |
| CCAAAACTTCCCGGACAAGC+TGG | 0.508137 | 4.2:+14864566 | None:intergenic |
| ATCGACCAAAGGCACGCTCC+AGG | 0.508917 | 4.2:+14867013 | None:intergenic |
| CAATTTGTCTGATCTTGTTG+AGG | 0.509858 | 4.2:-14872363 | MS.gene09198:CDS |
| GGGAAAGCAGTGGTTATGGT+GGG | 0.513543 | 4.2:-14874655 | MS.gene09198:CDS |
| TGTGACTCGCCAGCTTGTCC+GGG | 0.516195 | 4.2:-14864575 | MS.gene09198:CDS |
| ACAGCTGTGTAAAGCTCGGC+AGG | 0.518563 | 4.2:+14868208 | None:intergenic |
| TGTGTTGTATTTCATGTACA+AGG | 0.521565 | 4.2:+14864005 | None:intergenic |
| TCTGGCTCTCGAACAGACAT+TGG | 0.525795 | 4.2:-14874278 | MS.gene09198:CDS |
| GGAGAAGCCCGAATTGAAGT+TGG | 0.526505 | 4.2:-14864545 | MS.gene09198:CDS |
| ATGCCTTAAGTGCTTATGGT+TGG | 0.527145 | 4.2:-14874763 | MS.gene09198:CDS |
| TTTCCATTTGTTGGATGCTG+AGG | 0.531081 | 4.2:+14867704 | None:intergenic |
| ATGTGGATCGGTGTGAAGGA+TGG | 0.531951 | 4.2:-14874821 | MS.gene09198:CDS |
| AGCAGCCTTACCAACAGAAA+CGG | 0.532526 | 4.2:+14869444 | None:intergenic |
| GATATATACCTTCAGAGTAA+TGG | 0.533943 | 4.2:+14863911 | None:intergenic |
| ATCAACTGTAGTATTAATGA+TGG | 0.535860 | 4.2:-14863587 | MS.gene09198:CDS |
| CCAGACGCTGACCTCTGGAT+TGG | 0.538402 | 4.2:-14865820 | MS.gene09198:intron |
| CTTGAGGCATGTCTGCAGAC+AGG | 0.538488 | 4.2:-14874789 | MS.gene09198:CDS |
| ATAGTAAAATCTTACAGTAA+GGG | 0.540673 | 4.2:+14869357 | None:intergenic |
| TACGATCAGGTTAACGGCAA+GGG | 0.540828 | 4.2:-14863640 | MS.gene09198:CDS |
| GATCTGAAACTGCATTACTC+TGG | 0.543079 | 4.2:-14872407 | MS.gene09198:CDS |
| ATTTGATGAACATTGATGGA+TGG | 0.544901 | 4.2:-14867875 | MS.gene09198:CDS |
| CTCGAACAGACATTGGAGAC+TGG | 0.548273 | 4.2:-14874271 | MS.gene09198:CDS |
| TATCGTCCTCATCTCTATCT+CGG | 0.550443 | 4.2:-14875771 | MS.gene09198:CDS |
| AAACCATGTACAAAGAATTG+AGG | 0.551218 | 4.2:-14863801 | MS.gene09198:CDS |
| GCTCCCAGAATTTGTTCTCG+TGG | 0.551308 | 4.2:+14867849 | None:intergenic |
| GGTGGTAATGTTCTTGATGT+AGG | 0.552266 | 4.2:-14874341 | MS.gene09198:CDS |
| CAGTTACTATTGGCGTGGAC+GGG | 0.554072 | 4.2:-14866869 | MS.gene09198:CDS |
| GATTCAGAATCCGTTTCTGT+TGG | 0.555863 | 4.2:-14869454 | MS.gene09198:CDS |
| TTCTATTTGGCTGATGAAGG+TGG | 0.556162 | 4.2:-14874359 | MS.gene09198:CDS |
| GCAGCTACATTTAAAGTCTA+CGG | 0.559690 | 4.2:-14874249 | MS.gene09198:intron |
| CCCAACATCTAAGATCCAAA+TGG | 0.560922 | 4.2:+14865757 | None:intergenic |
| GATTAGATGCATGGTTCCAA+TGG | 0.562464 | 4.2:-14866993 | MS.gene09198:CDS |
| GCAGTTACTATTGGCGTGGA+CGG | 0.563372 | 4.2:-14866870 | MS.gene09198:CDS |
| ATACCACGAGAACAAATTCT+GGG | 0.563392 | 4.2:-14867852 | MS.gene09198:CDS |
| AGTTGATTCTTGCAGAGAGT+GGG | 0.570346 | 4.2:-14863843 | MS.gene09198:intron |
| TGGTACAATGAAACTCAGTC+AGG | 0.571656 | 4.2:-14866973 | MS.gene09198:intron |
| GAGCACATCCATTTACGGGT+TGG | 0.574434 | 4.2:-14863612 | MS.gene09198:CDS |
| AACGCAATATCTGTGGTGAA+AGG | 0.581686 | 4.2:+14871538 | None:intergenic |
| TCTGTTGGTAAGGCTGCTGT+TGG | 0.582816 | 4.2:-14869439 | MS.gene09198:CDS |
| CATTGGATATCATTGGACAC+TGG | 0.583078 | 4.2:-14867902 | MS.gene09198:CDS |
| TACGTTCTCTTGCCAAAACA+AGG | 0.584541 | 4.2:-14864141 | MS.gene09198:intron |
| GCTGAGGAACATACTCCTCT+GGG | 0.586239 | 4.2:+14867720 | None:intergenic |
| AAATGGAAAGAATTGAAAGC+AGG | 0.586969 | 4.2:-14864607 | MS.gene09198:CDS |
| GTGCACAATTATCAACAGAC+TGG | 0.587373 | 4.2:-14863679 | MS.gene09198:CDS |
| CTTTGATGGCTGGATTAATG+TGG | 0.589495 | 4.2:-14874838 | MS.gene09198:CDS |
| GGTCCAACCCCAGGTCTAAG+TGG | 0.590067 | 4.2:-14874415 | MS.gene09198:intron |
| AGCCTATTATGGACTGACTA+CGG | 0.592579 | 4.2:-14864166 | MS.gene09198:CDS |
| AACTTGGGTGAGAAGCTCGT+GGG | 0.595642 | 4.2:+14865790 | None:intergenic |
| CCTAACTTACCTGTGATGCA+AGG | 0.596073 | 4.2:+14872336 | None:intergenic |
| AATCCAGCCATCAAAGATTG+TGG | 0.600052 | 4.2:+14874845 | None:intergenic |
| CTTGGAAAGGTTGATCGACA+TGG | 0.601530 | 4.2:+14868184 | None:intergenic |
| CATAAGGAAAGTTTGTATTG+GGG | 0.603784 | 4.2:-14875798 | MS.gene09198:CDS |
| GCTGTTGGAAGCTTATTAGG+TGG | 0.604166 | 4.2:-14869424 | MS.gene09198:CDS |
| GCACTCCACCATTACTCTGA+AGG | 0.604977 | 4.2:-14863919 | MS.gene09198:intron |
| TGGTACAGCTGTGTAAAGCT+CGG | 0.606072 | 4.2:+14868204 | None:intergenic |
| TCAGACAAATTGTGAAAGTG+AGG | 0.606527 | 4.2:+14872374 | None:intergenic |
| ATATACCTTCAGAGTAATGG+TGG | 0.607960 | 4.2:+14863914 | None:intergenic |
| CCCCAGGTCTAAGTGGAATG+AGG | 0.608273 | 4.2:-14874408 | MS.gene09198:intron |
| GGTTGAAGTTGACCTGAGGA+AGG | 0.611109 | 4.2:+14875919 | None:intergenic |
| GAACTTGGGTGAGAAGCTCG+TGG | 0.611848 | 4.2:+14865789 | None:intergenic |
| GTACGATCAGGTTAACGGCA+AGG | 0.612640 | 4.2:-14863641 | MS.gene09198:CDS |
| GAAATACAACACAGAACATG+AGG | 0.612707 | 4.2:-14863995 | MS.gene09198:CDS |
| AACACTTCAATTGAATCCCC+AGG | 0.612855 | 4.2:-14866836 | MS.gene09198:intron |
| ATGGCTGGATTAATGTGGAT+CGG | 0.617699 | 4.2:-14874833 | MS.gene09198:CDS |
| AACTGTAGTATTAATGATGG+CGG | 0.619160 | 4.2:-14863584 | MS.gene09198:CDS |
| TTAATTTCTTCCCATTCATG+GGG | 0.620878 | 4.2:-14864504 | MS.gene09198:CDS |
| TAAGTGGAATGAGGACTTTG+GGG | 0.622197 | 4.2:-14874399 | MS.gene09198:CDS |
| AATGGCGTTCATCTGAACTT+GGG | 0.622487 | 4.2:+14865775 | None:intergenic |
| ATGAGCAGTTACTATTGGCG+TGG | 0.635286 | 4.2:-14866874 | MS.gene09198:CDS |
| TGTCGATCAACCTTTCCAAG+AGG | 0.650007 | 4.2:-14868181 | MS.gene09198:CDS |
| CATCAAGTACTGGTTGACCA+TGG | 0.651540 | 4.2:-14874713 | MS.gene09198:CDS |
| GAGGCATGTCTGCAGACAGG+AGG | 0.657209 | 4.2:-14874786 | MS.gene09198:CDS |
| CAAGTTTATAAAATCAAAGG+GGG | 0.658269 | 4.2:-14874675 | MS.gene09198:CDS |
| CCATGCATCTAATCGACCAA+AGG | 0.663193 | 4.2:+14867002 | None:intergenic |
| AGATCTGGAGATATTGAACA+AGG | 0.664713 | 4.2:-14865557 | MS.gene09198:intron |
| AGAGATAAACGCAATATCTG+TGG | 0.666612 | 4.2:+14871531 | None:intergenic |
| CCAAGTTTATAAAATCAAAG+GGG | 0.669326 | 4.2:-14874676 | MS.gene09198:CDS |
| ATTAATGTGGATCGGTGTGA+AGG | 0.672290 | 4.2:-14874825 | MS.gene09198:CDS |
| TGGTAGTCAAGATCATGCCA+TGG | 0.676038 | 4.2:+14874696 | None:intergenic |
| TGGGTAATCATCCAATCCAG+AGG | 0.683806 | 4.2:+14865809 | None:intergenic |
| CGAATTCCGAGATAGAGATG+AGG | 0.685066 | 4.2:+14875765 | None:intergenic |
| AGGATGGTAGTAATCACTTG+AGG | 0.685926 | 4.2:-14874805 | MS.gene09198:CDS |
| CATGAGGCTCCATATTGGAG+AGG | 0.689114 | 4.2:-14863979 | MS.gene09198:CDS |
| AAGTGGAATGAGGACTTTGG+GGG | 0.705880 | 4.2:-14874398 | MS.gene09198:CDS |
| TATTTGCAGTAGGATCCCAG+AGG | 0.797138 | 4.2:-14867735 | MS.gene09198:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 14863564 | 14875946 | 14863564 | ID=MS.gene09198 |
| chr4.2 | mRNA | 14863564 | 14875946 | 14863564 | ID=MS.gene09198.t1;Parent=MS.gene09198 |
| chr4.2 | exon | 14875932 | 14875946 | 14875932 | ID=MS.gene09198.t1.exon1;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14875932 | 14875946 | 14875932 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14875759 | 14875832 | 14875759 | ID=MS.gene09198.t1.exon2;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14875759 | 14875832 | 14875759 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14874620 | 14874871 | 14874620 | ID=MS.gene09198.t1.exon3;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14874620 | 14874871 | 14874620 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14874250 | 14874424 | 14874250 | ID=MS.gene09198.t1.exon4;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14874250 | 14874424 | 14874250 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14872346 | 14872432 | 14872346 | ID=MS.gene09198.t1.exon5;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14872346 | 14872432 | 14872346 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14872127 | 14872195 | 14872127 | ID=MS.gene09198.t1.exon6;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14872127 | 14872195 | 14872127 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14871479 | 14871575 | 14871479 | ID=MS.gene09198.t1.exon7;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14871479 | 14871575 | 14871479 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14869602 | 14869684 | 14869602 | ID=MS.gene09198.t1.exon8;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14869602 | 14869684 | 14869602 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14869372 | 14869479 | 14869372 | ID=MS.gene09198.t1.exon9;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14869372 | 14869479 | 14869372 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14868142 | 14868263 | 14868142 | ID=MS.gene09198.t1.exon10;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14868142 | 14868263 | 14868142 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14867837 | 14867944 | 14867837 | ID=MS.gene09198.t1.exon11;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14867837 | 14867944 | 14867837 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14867675 | 14867748 | 14867675 | ID=MS.gene09198.t1.exon12;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14867675 | 14867748 | 14867675 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14866974 | 14867099 | 14866974 | ID=MS.gene09198.t1.exon13;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14866974 | 14867099 | 14866974 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14866837 | 14866904 | 14866837 | ID=MS.gene09198.t1.exon14;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14866837 | 14866904 | 14866837 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14865689 | 14865838 | 14865689 | ID=MS.gene09198.t1.exon15;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14865689 | 14865838 | 14865689 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14865558 | 14865608 | 14865558 | ID=MS.gene09198.t1.exon16;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14865558 | 14865608 | 14865558 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14864759 | 14864815 | 14864759 | ID=MS.gene09198.t1.exon17;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14864759 | 14864815 | 14864759 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14864489 | 14864638 | 14864489 | ID=MS.gene09198.t1.exon18;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14864489 | 14864638 | 14864489 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14864142 | 14864233 | 14864142 | ID=MS.gene09198.t1.exon19;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14864142 | 14864233 | 14864142 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14863920 | 14864029 | 14863920 | ID=MS.gene09198.t1.exon20;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14863920 | 14864029 | 14863920 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14863787 | 14863850 | 14863787 | ID=MS.gene09198.t1.exon21;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14863787 | 14863850 | 14863787 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| chr4.2 | exon | 14863564 | 14863708 | 14863564 | ID=MS.gene09198.t1.exon22;Parent=MS.gene09198.t1 |
| chr4.2 | CDS | 14863564 | 14863708 | 14863564 | ID=cds.MS.gene09198.t1;Parent=MS.gene09198.t1 |
| Gene Sequence |
| Protein sequence |
