AlfalfaGEDB | MS.gene024038

M. sativa cultivar XinJiangDaYe / MS.gene024038

KEGG: -
GO: GO:0003674 GO:0004857 GO:0008150 GO:0008428 GO:0019219 GO:0019222 GO:0030234 GO:0031323 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0098772
PFAM: PF03737.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024038.t1	XP_003624176.1	100	166	0	0	1	166	1	166	2.80E-89	337.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024038.t1	Q9FFE0	83.7	166	27	0	1	166	1	166	3.0e-79	295.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024038.t1	B7FGQ6	100.0	166	0	0	1	166	1	166	2.0e-89	337.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene024038	MS.gene01699	PPI
MS.gene51161	MS.gene024038	PPI
MS.gene024038	MS.gene52579	PPI
MS.gene024038	MS.gene002309	PPI
MS.gene02320	MS.gene024038	PPI
MS.gene024038	MS.gene033474	PPI
MS.gene024038	MS.gene01288	PPI
MS.gene033474	MS.gene024038	PPI

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024038.t1	MTR_7g080040	100.000	166	0	1	166	1	166	2.09e-120	337
MS.gene024038.t1	MTR_2g010815	66.265	166	56	1	166	1	166	1.22e-80	236
MS.gene024038.t1	MTR_2g010800	66.265	166	56	1	166	1	166	2.84e-79	233

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024038.t1	AT5G16450	83.735	166	27	1	166	1	166	5.13e-103	293
MS.gene024038.t1	AT5G16450	83.735	166	27	1	166	1	166	5.13e-103	293
MS.gene024038.t1	AT3G02770	83.735	166	27	1	166	1	166	1.41e-102	291
MS.gene024038.t1	AT5G56260	71.687	166	47	1	166	1	166	1.64e-85	248
MS.gene024038.t1	AT5G56260	71.687	166	47	1	166	1	166	1.64e-85	248
MS.gene024038.t1	AT5G56260	71.687	166	47	1	166	1	166	1.64e-85	248
MS.gene024038.t1	AT5G56260	71.687	166	47	1	166	33	198	3.70e-85	249
MS.gene024038.t1	AT5G56260	71.687	166	47	1	166	33	198	3.70e-85	249

Find 56 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTCCCATACCTTTCTTAT+TGG	0.164687	7.1:-24268849	None:intergenic
ACCTTTCTTATTGGCTTTCA+TGG	0.257848	7.1:-24268840	None:intergenic
GAGATCAATGGTTGTGATAT+TGG	0.289628	7.1:+24268794	MS.gene024038:CDS
AGATCAATGGTTGTGATATT+GGG	0.305246	7.1:+24268795	MS.gene024038:CDS
CAGTTTGCGCTGTGCAATAT+TGG	0.315099	7.1:+24268694	MS.gene024038:CDS
TTCCATTGCCTTTCTCTTCA+AGG	0.326061	7.1:-24268646	None:intergenic
TTGTTCTGTGCTTGCACTAC+AGG	0.344974	7.1:-24268725	None:intergenic
CATGTTCCCATAACTATTGC+TGG	0.375703	7.1:+24268875	MS.gene024038:CDS
TGAAGACAATGTCCTGGTTC+GGG	0.379961	7.1:+24268619	MS.gene024038:CDS
AGTTTGCGCTGTGCAATATT+GGG	0.401915	7.1:+24268695	MS.gene024038:CDS
CAATATTGCACAGCGCAAAC+TGG	0.407075	7.1:-24268693	None:intergenic
TTGAAGACAATGTCCTGGTT+CGG	0.418613	7.1:+24268618	MS.gene024038:CDS
TCCTTGAAGTAAAATGGCCT+TGG	0.424619	7.1:+24268463	None:intergenic
CCTTGTCCCAGCAATAGTTA+TGG	0.430126	7.1:-24268882	None:intergenic
CTTGTCCCAGCAATAGTTAT+GGG	0.433835	7.1:-24268881	None:intergenic
CCTTTCTTATTGGCTTTCAT+GGG	0.438890	7.1:-24268839	None:intergenic
GATATTGGGGTGAGAGCTCT+TGG	0.450174	7.1:+24268809	MS.gene024038:CDS
CGGACCTATAGTTACGTTGA+AGG	0.453624	7.1:+24268592	MS.gene024038:CDS
GAAAGCCAATAAGAAAGGTA+TGG	0.467226	7.1:+24268844	MS.gene024038:CDS
CAAGGATCGGTGATGGGGAA+TGG	0.483479	7.1:+24268900	MS.gene024038:CDS
CTGGGACAAGGATCGGTGAT+GGG	0.483554	7.1:+24268894	MS.gene024038:CDS
CGGGAGTTCCTTGAAGAGAA+AGG	0.485386	7.1:+24268638	MS.gene024038:CDS
AAGAGTGCTCGTTGTGGATG+GGG	0.493016	7.1:+24268667	MS.gene024038:CDS
GGAAGAGTGCTCGTTGTGGA+TGG	0.499526	7.1:+24268665	MS.gene024038:CDS
TCCCCGCTCAAAATCAATTG+AGG	0.512971	7.1:-24268515	None:intergenic
GCACAGAACAATGGATGGGC+AGG	0.514058	7.1:+24268737	MS.gene024038:CDS
TCAGATTTATGGTCGAAGAC+AGG	0.518932	7.1:+24268562	MS.gene024038:CDS
CCCATGAAAGCCAATAAGAA+AGG	0.521845	7.1:+24268839	MS.gene024038:CDS
CTTCAACGTAACTATAGGTC+CGG	0.524498	7.1:-24268591	None:intergenic
GCTGGGACAAGGATCGGTGA+TGG	0.524649	7.1:+24268893	MS.gene024038:CDS
AACACCTTCAACGTAACTAT+AGG	0.525623	7.1:-24268596	None:intergenic
CCCCGCTCAAAATCAATTGA+GGG	0.526263	7.1:-24268514	None:intergenic
GAAGAGTGCTCGTTGTGGAT+GGG	0.527267	7.1:+24268666	MS.gene024038:CDS
CGCATCACACACTTCGGCAG+TGG	0.539341	7.1:-24268489	None:intergenic
ACTATTGCTGGGACAAGGAT+CGG	0.546867	7.1:+24268887	MS.gene024038:CDS
AAAGCCAATAAGAAAGGTAT+GGG	0.553213	7.1:+24268845	MS.gene024038:CDS
TGCAAGCACAGAACAATGGA+TGG	0.553793	7.1:+24268732	MS.gene024038:CDS
CCATAACTATTGCTGGGACA+AGG	0.560406	7.1:+24268882	MS.gene024038:CDS
CTTCAAGGAACTCCCGAACC+AGG	0.562244	7.1:-24268631	None:intergenic
TGGGCAGGTATCATTGTGAA+TGG	0.567768	7.1:+24268752	MS.gene024038:CDS
TTCCTTGAAGAGAAAGGCAA+TGG	0.581451	7.1:+24268644	MS.gene024038:CDS
ATGTTCCCATAACTATTGCT+GGG	0.588122	7.1:+24268876	MS.gene024038:CDS
AGGGTTCGCATCACACACTT+CGG	0.594074	7.1:-24268495	None:intergenic
TGGCTTTATGCAGACACCGA+TGG	0.594724	7.1:+24268920	MS.gene024038:CDS
TGGGACAAGGATCGGTGATG+GGG	0.608225	7.1:+24268895	MS.gene024038:CDS
AGAGTGCTCGTTGTGGATGG+GGG	0.612554	7.1:+24268668	MS.gene024038:CDS
GGTGTTTGAAGACAATGTCC+TGG	0.615251	7.1:+24268613	MS.gene024038:CDS
AGAGATGTGGATGAGATCAA+TGG	0.633740	7.1:+24268782	MS.gene024038:CDS
GATCAATGGTTGTGATATTG+GGG	0.635484	7.1:+24268796	MS.gene024038:CDS
TCGAGAGATCAGAATTCCAT+CGG	0.636216	7.1:-24268936	None:intergenic
GTAGTGCAAGCACAGAACAA+TGG	0.640217	7.1:+24268728	MS.gene024038:CDS
GCAAGCACAGAACAATGGAT+GGG	0.641265	7.1:+24268733	MS.gene024038:CDS
CACTTCGGCAGTGGTAACCA+AGG	0.648262	7.1:-24268480	None:intergenic
GAATGGATGTATAAGAGATG+TGG	0.656133	7.1:+24268769	MS.gene024038:CDS
CAATGGAAGAGTGCTCGTTG+TGG	0.668797	7.1:+24268661	MS.gene024038:CDS
TTGCGCTGTGCAATATTGGG+TGG	0.699986	7.1:+24268698	MS.gene024038:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATCTGAAAAATTGGTTGA+AGG	-	chr7.1:24268550-24268569	None:intergenic	25.0%
!	AATCTGAAAAATTGGTTGAA+GGG	-	chr7.1:24268549-24268568	None:intergenic	25.0%
!!!	CAACCAATTTTTCAGATTTA+TGG	+	chr7.1:24268551-24268570	MS.gene024038:CDS	25.0%
	AGATCAATGGTTGTGATATT+GGG	+	chr7.1:24268795-24268814	MS.gene024038:CDS	30.0%
	CGACCATAAATCTGAAAAAT+TGG	-	chr7.1:24268557-24268576	None:intergenic	30.0%
!	AAAGCCAATAAGAAAGGTAT+GGG	+	chr7.1:24268845-24268864	MS.gene024038:CDS	30.0%
	AACACCTTCAACGTAACTAT+AGG	-	chr7.1:24268599-24268618	None:intergenic	35.0%
	ATGTTCCCATAACTATTGCT+GGG	+	chr7.1:24268876-24268895	MS.gene024038:CDS	35.0%
	GAAAGCCAATAAGAAAGGTA+TGG	+	chr7.1:24268844-24268863	MS.gene024038:CDS	35.0%
	GAATGGATGTATAAGAGATG+TGG	+	chr7.1:24268769-24268788	MS.gene024038:CDS	35.0%
	GAGATCAATGGTTGTGATAT+TGG	+	chr7.1:24268794-24268813	MS.gene024038:CDS	35.0%
	GATCAATGGTTGTGATATTG+GGG	+	chr7.1:24268796-24268815	MS.gene024038:CDS	35.0%
	TTCTCCCATACCTTTCTTAT+TGG	-	chr7.1:24268852-24268871	None:intergenic	35.0%
!!	AACCCTCAATTGATTTTGAG+CGG	+	chr7.1:24268512-24268531	MS.gene024038:CDS	35.0%
!!	ACCTTTCTTATTGGCTTTCA+TGG	-	chr7.1:24268843-24268862	None:intergenic	35.0%
!!	CCTTTCTTATTGGCTTTCAT+GGG	-	chr7.1:24268842-24268861	None:intergenic	35.0%
	AGAGATGTGGATGAGATCAA+TGG	+	chr7.1:24268782-24268801	MS.gene024038:CDS	40.0%
	AGTTTGCGCTGTGCAATATT+GGG	+	chr7.1:24268695-24268714	MS.gene024038:CDS	40.0%
	CATGTTCCCATAACTATTGC+TGG	+	chr7.1:24268875-24268894	MS.gene024038:CDS	40.0%
	CCCATGAAAGCCAATAAGAA+AGG	+	chr7.1:24268839-24268858	MS.gene024038:CDS	40.0%
	CTTCAACGTAACTATAGGTC+CGG	-	chr7.1:24268594-24268613	None:intergenic	40.0%
	CTTGTCCCAGCAATAGTTAT+GGG	-	chr7.1:24268884-24268903	None:intergenic	40.0%
	TCAGATTTATGGTCGAAGAC+AGG	+	chr7.1:24268562-24268581	MS.gene024038:CDS	40.0%
	TCGAGAGATCAGAATTCCAT+CGG	-	chr7.1:24268939-24268958	None:intergenic	40.0%
	TTCCATTGCCTTTCTCTTCA+AGG	-	chr7.1:24268649-24268668	None:intergenic	40.0%
	TTCCTTGAAGAGAAAGGCAA+TGG	+	chr7.1:24268644-24268663	MS.gene024038:CDS	40.0%
	TTGAAGACAATGTCCTGGTT+CGG	+	chr7.1:24268618-24268637	MS.gene024038:CDS	40.0%
!!	ACCCTCAATTGATTTTGAGC+GGG	+	chr7.1:24268513-24268532	MS.gene024038:CDS	40.0%
	ACTATTGCTGGGACAAGGAT+CGG	+	chr7.1:24268887-24268906	MS.gene024038:CDS	45.0%
	CAATATTGCACAGCGCAAAC+TGG	-	chr7.1:24268696-24268715	None:intergenic	45.0%
	CAGTTTGCGCTGTGCAATAT+TGG	+	chr7.1:24268694-24268713	MS.gene024038:CDS	45.0%
	CCATAACTATTGCTGGGACA+AGG	+	chr7.1:24268882-24268901	MS.gene024038:CDS	45.0%
	CCCCGCTCAAAATCAATTGA+GGG	-	chr7.1:24268517-24268536	None:intergenic	45.0%
	CCTTGTCCCAGCAATAGTTA+TGG	-	chr7.1:24268885-24268904	None:intergenic	45.0%
	CGGACCTATAGTTACGTTGA+AGG	+	chr7.1:24268592-24268611	MS.gene024038:CDS	45.0%
	GCAAGCACAGAACAATGGAT+GGG	+	chr7.1:24268733-24268752	MS.gene024038:CDS	45.0%
	GGTGTTTGAAGACAATGTCC+TGG	+	chr7.1:24268613-24268632	MS.gene024038:CDS	45.0%
	GTAGTGCAAGCACAGAACAA+TGG	+	chr7.1:24268728-24268747	MS.gene024038:CDS	45.0%
	TCCCCGCTCAAAATCAATTG+AGG	-	chr7.1:24268518-24268537	None:intergenic	45.0%
	TGAAGACAATGTCCTGGTTC+GGG	+	chr7.1:24268619-24268638	MS.gene024038:CDS	45.0%
	TGCAAGCACAGAACAATGGA+TGG	+	chr7.1:24268732-24268751	MS.gene024038:CDS	45.0%
	TGGGCAGGTATCATTGTGAA+TGG	+	chr7.1:24268752-24268771	MS.gene024038:CDS	45.0%
	TTGTTCTGTGCTTGCACTAC+AGG	-	chr7.1:24268728-24268747	None:intergenic	45.0%
!!	CCCTCAATTGATTTTGAGCG+GGG	+	chr7.1:24268514-24268533	MS.gene024038:CDS	45.0%
	AGGGTTCGCATCACACACTT+CGG	-	chr7.1:24268498-24268517	None:intergenic	50.0%
	CGGGAGTTCCTTGAAGAGAA+AGG	+	chr7.1:24268638-24268657	MS.gene024038:CDS	50.0%
	GATATTGGGGTGAGAGCTCT+TGG	+	chr7.1:24268809-24268828	MS.gene024038:CDS	50.0%
	TTGCGCTGTGCAATATTGGG+TGG	+	chr7.1:24268698-24268717	MS.gene024038:CDS	50.0%
!	GGTCGAAGACAGGTCTTTTC+CGG	+	chr7.1:24268572-24268591	MS.gene024038:CDS	50.0%
!!	AAGAGTGCTCGTTGTGGATG+GGG	+	chr7.1:24268667-24268686	MS.gene024038:CDS	50.0%
!!	CAATGGAAGAGTGCTCGTTG+TGG	+	chr7.1:24268661-24268680	MS.gene024038:CDS	50.0%
!!	GAAGAGTGCTCGTTGTGGAT+GGG	+	chr7.1:24268666-24268685	MS.gene024038:CDS	50.0%
!!	TGGCTTTATGCAGACACCGA+TGG	+	chr7.1:24268920-24268939	MS.gene024038:CDS	50.0%
	CACTTCGGCAGTGGTAACCA+AGG	-	chr7.1:24268483-24268502	None:intergenic	55.0%
	CTGGGACAAGGATCGGTGAT+GGG	+	chr7.1:24268894-24268913	MS.gene024038:CDS	55.0%
	CTTCAAGGAACTCCCGAACC+AGG	-	chr7.1:24268634-24268653	None:intergenic	55.0%
	GCACAGAACAATGGATGGGC+AGG	+	chr7.1:24268737-24268756	MS.gene024038:CDS	55.0%
	TGGGACAAGGATCGGTGATG+GGG	+	chr7.1:24268895-24268914	MS.gene024038:CDS	55.0%
!	AGAGTGCTCGTTGTGGATGG+GGG	+	chr7.1:24268668-24268687	MS.gene024038:CDS	55.0%
!!	CAAGGATCGGTGATGGGGAA+TGG	+	chr7.1:24268900-24268919	MS.gene024038:CDS	55.0%
!!	GGAAGAGTGCTCGTTGTGGA+TGG	+	chr7.1:24268665-24268684	MS.gene024038:CDS	55.0%
	CGCATCACACACTTCGGCAG+TGG	-	chr7.1:24268492-24268511	None:intergenic	60.0%
	GCTGGGACAAGGATCGGTGA+TGG	+	chr7.1:24268893-24268912	MS.gene024038:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	24268476	24268976	24268476	ID=MS.gene024038
chr7.1	mRNA	24268476	24268976	24268476	ID=MS.gene024038.t1;Parent=MS.gene024038
chr7.1	exon	24268476	24268976	24268476	ID=MS.gene024038.t1.exon1;Parent=MS.gene024038.t1
chr7.1	CDS	24268476	24268976	24268476	ID=cds.MS.gene024038.t1;Parent=MS.gene024038.t1

Gene Sequence

>MS.gene024038

ATGGCCTTGGTTACCACTGCCGAAGTGTGTGATGCGAACCCTCAATTGATTTTGAGCGGGGAGCTTCGTGCCCTTCAACCAATTTTTCAGATTTATGGTCGAAGACAGGTCTTTTCCGGACCTATAGTTACGTTGAAGGTGTTTGAAGACAATGTCCTGGTTCGGGAGTTCCTTGAAGAGAAAGGCAATGGAAGAGTGCTCGTTGTGGATGGGGGTGCCAGTTTGCGCTGTGCAATATTGGGTGGTAATCCTGTAGTGCAAGCACAGAACAATGGATGGGCAGGTATCATTGTGAATGGATGTATAAGAGATGTGGATGAGATCAATGGTTGTGATATTGGGGTGAGAGCTCTTGGTTCTCATCCCATGAAAGCCAATAAGAAAGGTATGGGAGAAAAACATGTTCCCATAACTATTGCTGGGACAAGGATCGGTGATGGGGAATGGCTTTATGCAGACACCGATGGAATTCTGATCTCTCGAACAGAGCTTTCTGTTTGA

Protein sequence

>MS.gene024038.t1

MALVTTAEVCDANPQLILSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLVREFLEEKGNGRVLVVDGGASLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALGSHPMKANKKGMGEKHVPITIAGTRIGDGEWLYADTDGILISRTELSV