AlfalfaGEDB | MS.gene024088

M. sativa cultivar XinJiangDaYe / MS.gene024088

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024088.t1	XP_003624238.1	95.6	616	25	2	1	615	1	615	6.6e-309	1069.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024088.t1	Q9ASS4	55.7	621	264	5	1	611	1	620	5.7e-160	565.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024088.t1	A2Q5X8	95.6	616	25	2	1	615	1	615	4.8e-309	1069.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene024088	MS.gene041376	PPI
MS.gene024088	MS.gene010536	PPI
MS.gene024088	MS.gene027143	PPI
MS.gene024088	MS.gene82663	PPI
MS.gene024088	MS.gene02437	PPI
MS.gene024088	MS.gene30580	PPI
MS.gene024088	MS.gene56742	PPI
MS.gene024088	MS.gene57987	PPI
MS.gene024088	MS.gene047793	PPI
MS.gene024088	MS.gene010517	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024088.t1	MTR_7g080810	97.240	616	15	2	1	615	1	615	0.0	1225
MS.gene024088.t1	MTR_8g010180	76.786	616	139	4	1	613	3	617	0.0	947
MS.gene024088.t1	MTR_6g009370	46.416	586	300	8	12	591	11	588	8.15e-179	520
MS.gene024088.t1	MTR_4g092530	44.293	587	261	10	29	580	8	563	1.03e-162	478
MS.gene024088.t1	MTR_4g092520	41.856	571	281	14	23	580	8	540	4.12e-138	414
MS.gene024088.t1	MTR_3g095100	40.076	524	273	12	102	591	651	1167	3.20e-107	350
MS.gene024088.t1	MTR_3g095100	34.641	153	73	3	66	191	399	551	6.13e-14	75.9
MS.gene024088.t1	MTR_1g100787	38.561	542	287	10	81	580	731	1268	3.80e-100	332
MS.gene024088.t1	MTR_1g100787	36.842	133	73	2	82	203	552	684	5.18e-12	69.7
MS.gene024088.t1	MTR_1g100787	32.000	150	95	3	66	209	463	611	2.39e-11	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene024088.t1	AT5G48380	61.720	593	215	6	30	611	29	620	0.0	745
MS.gene024088.t1	AT3G28450	45.222	586	309	7	11	591	13	591	6.65e-178	518
MS.gene024088.t1	AT1G69990	44.211	570	297	7	29	589	18	575	9.75e-176	511
MS.gene024088.t1	AT1G27190	44.920	561	303	3	29	584	24	583	8.12e-175	509
MS.gene024088.t1	AT5G07280	38.448	554	290	13	56	580	661	1192	5.07e-103	338
MS.gene024088.t1	AT5G07280	35.714	126	75	2	89	209	460	584	1.41e-11	68.2
MS.gene024088.t1	AT5G07280	37.984	129	75	2	84	208	587	714	6.04e-11	66.2
MS.gene024088.t1	AT4G39400	37.873	536	292	13	97	599	650	1177	1.13e-102	337
MS.gene024088.t1	AT4G39400	37.500	144	66	3	71	191	411	553	2.42e-16	83.6
MS.gene024088.t1	AT1G55610	38.856	507	273	12	102	580	640	1137	1.27e-100	331

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Find 127 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATGTTATTGGGAC+TGG	0.457963	7.4:+25650380	MS.gene024088:CDS
AAACAATTATTTGCAGAATT+GGG	0.363885	7.4:+25648770	MS.gene024088:CDS
AAAGGTGATGTTTATAGCTT+CGG	0.424724	7.4:+25650923	MS.gene024088:CDS
AAATGGGCAAGAATTCTTAA+GGG	0.501285	7.4:+25649434	MS.gene024088:CDS
AAATTCTGGAGGAATTTGAC+CGG	0.582703	7.4:-25649120	None:intergenic
AAATTTCCTTTAAAAGTTTC+TGG	0.209161	7.4:-25651001	None:intergenic
AACAGTGCGACATCGTAACT+TGG	0.531048	7.4:+25650520	MS.gene024088:CDS
AACATAGTAGGCCTCTCCTT+TGG	0.412596	7.4:-25651157	None:intergenic
AAGATCCTGAAGGAAACAAA+TGG	0.451671	7.4:+25649417	MS.gene024088:CDS
AAGCTATAAACATCACCTTT+AGG	0.395935	7.4:-25650920	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTGATGTTTATAGCTT+CGG	+	chr7.4:25650923-25650942	MS.gene024088:CDS	30.0%
AAATAGGTCCTTGAAATTGT+AGG	-	chr7.4:25650048-25650067	None:intergenic	30.0%
AAATGGGCAAGAATTCTTAA+GGG	+	chr7.4:25649434-25649453	MS.gene024088:CDS	30.0%
AAGCTATAAACATCACCTTT+AGG	-	chr7.4:25650923-25650942	None:intergenic	30.0%
AAGTATCATTATCTCATCCT+CGG	-	chr7.4:25651233-25651252	None:intergenic	30.0%
ACTCATGGTTAAAAGATTAC+TGG	+	chr7.4:25650448-25650467	MS.gene024088:CDS	30.0%
ACTTTCTAATATGGGACTTA+AGG	+	chr7.4:25648881-25648900	MS.gene024088:CDS	30.0%
AGGTAAGATAAATTGATGCA+TGG	+	chr7.4:25649471-25649490	MS.gene024088:intron	30.0%
ATTTGAAGATAGATCAAGGT+TGG	-	chr7.4:25649021-25649040	None:intergenic	30.0%
CGACATCTTATGCTTAAAAA+GGG	+	chr7.4:25648725-25648744	MS.gene024088:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	25648633	25651315	25648633	ID=MS.gene024088
chr7.4	mRNA	25648633	25651315	25648633	ID=MS.gene024088.t1;Parent=MS.gene024088
chr7.4	exon	25648633	25649472	25648633	ID=MS.gene024088.t1.exon1;Parent=MS.gene024088.t1
chr7.4	CDS	25648633	25649472	25648633	ID=cds.MS.gene024088.t1;Parent=MS.gene024088.t1
chr7.4	exon	25650308	25651315	25650308	ID=MS.gene024088.t1.exon2;Parent=MS.gene024088.t1
chr7.4	CDS	25650308	25651315	25650308	ID=cds.MS.gene024088.t1;Parent=MS.gene024088.t1

Gene Sequence

>MS.gene024088

ATGGTTTTAAGTAGCAGAATTTTCAGTACTCCTATTATTTTTAGTTTCTCTCTGCTAGTTATTAGTTGTGGCATCACCTACGGTACGGAGACCGACATCTTATGCTTAAAAAGGGTAAAAGAATCACTTAAAGACCCAAACAATTATTTGCAGAATTGGGATTTCAACAACAAAACTGAAGGGTCTATCTGCAAGTTCACTGGTGTTGAATGTTGGCATCCTGATGAAAATAGGGTTTTGAATCTCAAACTTTCTAATATGGGACTTAAGGGCGAGTTTCCTCGCGGTATTCAAAATTGTTCGAGCTTAACAGGATTAGATTTTTCGTTGAACAGCCTCTCTAAAACAATTCCGGCCGATGTATCTACCCTTATTGCCTTTGTGACCAACCTTGATCTATCTTCAAATGATTTCACCGGAGAGATCCCCGACTCACTTGCTAATTGTACCTATCTTAATAATATTAAACTTGACCAGAACCAACTCACCGGTCAAATTCCTCCAGAATTTGCTGGACTCAATCGGCTTAAGACGTTTAGTGTTTCCAACAATCTTTTGTCAGGACAAGTTCCAAATTTTAGACAAGGTATAGTTACGGCAGATAGTTTTGCGAATAATTCGGGACTCTGCGGACCTCCTTTAGAGGCTTGCAAGAGTAAGTCTTCGAAGACTAACACTGCAGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTCTTGCAGCATTAGGAGTGGGCGTTGGATTGCTCTTCTTTGTACGCAGTGTTTCTCACAGGAAAAAGGAAGAAGATCCTGAAGGAAACAAATGGGCAAGAATTCTTAAGGGAACCAAGAAAATTAAGGTAAGATAAATTGATGCATGGCTTGTATGTTCTTAGATAGATGAAAAGTAGTATTAGTTCTTATTACGTATTGGATTGTATTATCCATAGAGCATATATTCTTTTTTCTTATATAGATTTTTGCTTTCAAAAATATTTAATTATGGAAAACACCTTCAAGTAGAAAATCATTTTCTGGATATTATTTTGTTGTATGTTATTTTTTTTATACTATTGCATTAACCTAGCCCCCCATATCATCAAAATTCCAAAGTGATCCTTAGAATTGCAGTTTGTTCCTTTATTTGGATATGTTATCAATGCATCCCTAACATTATTCACTTAGTTTCAAAAATGATACCAAAGTGATCCTTAGAATTGCAAAAAATTAATGAAGTTTGTTCCTTTATTTGGATATGTTATCAAATGCATCCCTAACATTATTCACTTAGTTTCAAATTCATCCCCGATGATACCAACTTAATGTCAATCTAGTCCCTGAAATATGAATGGAGGGATGGATATGATTTAATTTTTGCAATTTCAGTGTTCATTTTGCAATATTGATAATGTGAGGGGAAGATTGACACAGTCCTACAATTTCAAGGACCTATTTGGATATTTAATCTTTCAATTGTACATCTTAATATCGTTGATTATACTAATTTTGAAAAAGTCTTACTGTTGTGTCAAATATAGGAAGCCAATTATTTTCTAGGCCCAATACTTAAATGATGCATTTTCTTCACGAGACATTAGAAAAGCAGACAATAGTTTCCGACAGTTTAATTTCTCATATTTAGTGAGCATTAGTTTTTGTATATATTAAGGCTAATTGTGTTGGACTTCACCTCAGGTTTCAATGTTTGAGAAGTCAATTTCAAAAATGAACTTGAGTGATCTCATGAAGGCTACTAATAACTTCAGTAAAAGCAATGTTATTGGGACTGGAAGATCTGGAACTGTTTACAGAGCTGTCCTTGACGACGGCACATCACTCATGGTTAAAAGATTACTGGAATCTCAACACTCGGAGCAAGAATTTACGGCTGAGATGGCCACACTAGGAACAGTGCGACATCGTAACTTGGTTCCTCTTTTAGGTTTTTGCCTGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACTCTTCATGACAAACTACACCCTGATGCTAGCGAGTGCACTATGGAGTGGTCTGTAAGGCTCAAAATCGCAATTGGAGCAGCCAAAGGATTCGCATGGCTTCATCACAACTGCAATCCTCGTATCATCCACCGAAACATAAGCTCAAAGTGCATTTTGTTGGATGTAGATTTCGAGCCCAAAATTTCTGATTTTGGCCTTGCAAGATTGATGAACCCAATTGATACCCATTTGAGTACTTTTGTAAATGGTGAGTTTGGCGATTTAGGTTATGTTGCTCCTGAGTATACAACAACTTTGGTGGCTACACCTAAAGGTGATGTTTATAGCTTCGGAACTGTGCTTCTTGAGTTGGTAACAGGTGAAAGACCTACACATATAGCAAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATTATGCAGCTCTCAGTCAACTCTAAATTAAAAGACGCCATTGATGAATCACTAGTTGGAAAAGGCGTTGATCATGAACTTTTTCAGTTTCTAAAGGTTGCATGTAACTGTGTTTCATCAACTCCAAAGGAGAGGCCTACTATGTTTGAAGTCTACCAGTTTCTAAGAGACATTGGGAGTAGATATAATTTCATAACCGAGGATGAGATAATGATACTTACAGATAATGGTGATGCTGGTAAATTGGAAGAACTTATCGTAGCGCGAGAGGGACATAATTGA

Protein sequence

>MS.gene024088.t1

MVLSSRIFSTPIIFSFSLLVISCGITYGTETDILCLKRVKESLKDPNNYLQNWDFNNKTEGSICKFTGVECWHPDENRVLNLKLSNMGLKGEFPRGIQNCSSLTGLDFSLNSLSKTIPADVSTLIAFVTNLDLSSNDFTGEIPDSLANCTYLNNIKLDQNQLTGQIPPEFAGLNRLKTFSVSNNLLSGQVPNFRQGIVTADSFANNSGLCGPPLEACKSKSSKTNTAVIAGAAVGGVTLAALGVGVGLLFFVRSVSHRKKEEDPEGNKWARILKGTKKIKVSMFEKSISKMNLSDLMKATNNFSKSNVIGTGRSGTVYRAVLDDGTSLMVKRLLESQHSEQEFTAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDKLHPDASECTMEWSVRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDVDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHIAKAPETFKGNLVEWIMQLSVNSKLKDAIDESLVGKGVDHELFQFLKVACNCVSSTPKERPTMFEVYQFLRDIGSRYNFITEDEIMILTDNGDAGKLEELIVAREGHN