Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024359.t1 | XP_003623402.1 | 95.3 | 192 | 9 | 0 | 1 | 192 | 1 | 192 | 2.80E-96 | 361.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024359.t1 | Q9C523 | 66.9 | 154 | 50 | 1 | 40 | 192 | 32 | 185 | 3.5e-55 | 216.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024359.t1 | G7KU38 | 95.3 | 192 | 9 | 0 | 1 | 192 | 1 | 192 | 2.0e-96 | 361.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene024359 | MS.gene33681 | PPI |
MS.gene024359 | MS.gene06033 | PPI |
MS.gene024359 | MS.gene33679 | PPI |
MS.gene024359 | MS.gene034592 | PPI |
MS.gene068578 | MS.gene024359 | PPI |
MS.gene024359 | MS.gene55766 | PPI |
MS.gene024359 | MS.gene39163 | PPI |
MS.gene55764 | MS.gene024359 | PPI |
MS.gene024359 | MS.gene46462 | PPI |
MS.gene024359 | MS.gene33680 | PPI |
MS.gene024359 | MS.gene06035 | PPI |
MS.gene024359 | MS.gene068294 | PPI |
MS.gene33424 | MS.gene024359 | PPI |
MS.gene024359 | MS.gene068291 | PPI |
MS.gene024359 | MS.gene24973 | PPI |
MS.gene024359 | MS.gene33426 | PPI |
MS.gene024359 | MS.gene048891 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024359.t1 | MTR_7g070390 | 95.312 | 192 | 9 | 0 | 1 | 192 | 1 | 192 | 5.27e-126 | 353 |
MS.gene024359.t1 | MTR_4g013350 | 68.362 | 177 | 54 | 2 | 17 | 192 | 22 | 197 | 4.79e-87 | 254 |
MS.gene024359.t1 | MTR_4g013320 | 70.760 | 171 | 48 | 2 | 23 | 192 | 30 | 199 | 2.91e-85 | 250 |
MS.gene024359.t1 | MTR_4g013345 | 67.978 | 178 | 55 | 2 | 16 | 192 | 20 | 196 | 3.66e-85 | 249 |
MS.gene024359.t1 | MTR_4g013335 | 68.824 | 170 | 51 | 2 | 23 | 192 | 29 | 196 | 1.05e-83 | 246 |
MS.gene024359.t1 | MTR_4g013330 | 67.442 | 172 | 52 | 2 | 24 | 192 | 29 | 199 | 4.99e-83 | 244 |
MS.gene024359.t1 | MTR_4g013325 | 69.231 | 169 | 49 | 2 | 25 | 192 | 33 | 199 | 9.68e-80 | 236 |
MS.gene024359.t1 | MTR_4g013310 | 65.497 | 171 | 55 | 3 | 23 | 192 | 30 | 197 | 1.37e-77 | 230 |
MS.gene024359.t1 | MTR_4g013385 | 56.915 | 188 | 78 | 1 | 5 | 192 | 6 | 190 | 7.88e-75 | 223 |
MS.gene024359.t1 | MTR_0433s0040 | 56.915 | 188 | 78 | 1 | 5 | 192 | 6 | 190 | 7.88e-75 | 223 |
MS.gene024359.t1 | MTR_4g013770 | 55.866 | 179 | 74 | 2 | 16 | 192 | 16 | 191 | 1.82e-65 | 199 |
MS.gene024359.t1 | MTR_1g054525 | 50.000 | 192 | 87 | 5 | 5 | 192 | 6 | 192 | 7.79e-59 | 182 |
MS.gene024359.t1 | MTR_4g013355 | 47.619 | 189 | 85 | 3 | 5 | 192 | 4 | 179 | 5.75e-57 | 177 |
MS.gene024359.t1 | MTR_4g073950 | 47.647 | 170 | 82 | 2 | 30 | 192 | 23 | 192 | 1.59e-53 | 169 |
MS.gene024359.t1 | MTR_7g093870 | 50.641 | 156 | 71 | 2 | 43 | 192 | 38 | 193 | 3.29e-51 | 164 |
MS.gene024359.t1 | MTR_7g093790 | 43.850 | 187 | 98 | 4 | 11 | 192 | 7 | 191 | 2.26e-48 | 156 |
MS.gene024359.t1 | MTR_7g093850 | 49.405 | 168 | 79 | 4 | 28 | 192 | 30 | 194 | 2.56e-48 | 156 |
MS.gene024359.t1 | MTR_1g056370 | 42.857 | 189 | 95 | 3 | 7 | 191 | 6 | 185 | 5.13e-48 | 155 |
MS.gene024359.t1 | MTR_7g093820 | 50.980 | 153 | 71 | 3 | 43 | 192 | 43 | 194 | 7.19e-48 | 155 |
MS.gene024359.t1 | MTR_7g093830 | 48.214 | 168 | 81 | 4 | 28 | 192 | 29 | 193 | 2.38e-47 | 154 |
MS.gene024359.t1 | MTR_3g105640 | 41.622 | 185 | 97 | 3 | 11 | 192 | 12 | 188 | 2.15e-45 | 148 |
MS.gene024359.t1 | MTR_3g105630 | 39.286 | 196 | 103 | 4 | 1 | 192 | 6 | 189 | 1.34e-44 | 146 |
MS.gene024359.t1 | MTR_5g096120 | 42.051 | 195 | 96 | 5 | 5 | 192 | 5 | 189 | 5.00e-44 | 145 |
MS.gene024359.t1 | MTR_4g078885 | 44.586 | 157 | 86 | 1 | 36 | 192 | 30 | 185 | 8.05e-44 | 144 |
MS.gene024359.t1 | MTR_3g034030 | 44.586 | 157 | 86 | 1 | 36 | 192 | 30 | 185 | 3.26e-43 | 143 |
MS.gene024359.t1 | MTR_4g122110 | 32.192 | 146 | 98 | 1 | 48 | 192 | 35 | 180 | 2.18e-21 | 86.7 |
MS.gene024359.t1 | MTR_4g122130 | 32.192 | 146 | 98 | 1 | 48 | 192 | 35 | 180 | 6.90e-20 | 82.8 |
MS.gene024359.t1 | MTR_8g099115 | 30.968 | 155 | 96 | 4 | 44 | 188 | 33 | 186 | 5.05e-16 | 72.8 |
MS.gene024359.t1 | MTR_8g099135 | 30.282 | 142 | 89 | 3 | 47 | 179 | 32 | 172 | 4.00e-15 | 70.5 |
MS.gene024359.t1 | MTR_4g049550 | 26.000 | 150 | 110 | 1 | 39 | 187 | 24 | 173 | 2.21e-14 | 68.2 |
MS.gene024359.t1 | MTR_4g049570 | 28.082 | 146 | 99 | 2 | 46 | 190 | 31 | 171 | 4.70e-13 | 64.7 |
MS.gene024359.t1 | MTR_1g115510 | 34.454 | 119 | 71 | 3 | 80 | 191 | 235 | 353 | 7.76e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024359.t1 | AT1G58170 | 66.883 | 154 | 50 | 1 | 40 | 192 | 32 | 185 | 9.72e-75 | 223 |
MS.gene024359.t1 | AT1G55210 | 55.376 | 186 | 80 | 3 | 7 | 192 | 5 | 187 | 1.18e-69 | 210 |
MS.gene024359.t1 | AT1G55210 | 55.376 | 186 | 80 | 3 | 7 | 192 | 5 | 187 | 1.18e-69 | 210 |
MS.gene024359.t1 | AT5G49040 | 55.056 | 178 | 78 | 2 | 16 | 192 | 15 | 191 | 2.98e-67 | 204 |
MS.gene024359.t1 | AT3G13650 | 54.286 | 175 | 75 | 4 | 18 | 192 | 17 | 186 | 9.52e-66 | 200 |
MS.gene024359.t1 | AT1G65870 | 52.318 | 151 | 71 | 1 | 42 | 191 | 39 | 189 | 1.34e-54 | 172 |
MS.gene024359.t1 | AT5G49030 | 54.268 | 164 | 73 | 2 | 16 | 178 | 15 | 177 | 1.56e-52 | 181 |
MS.gene024359.t1 | AT3G13660 | 57.600 | 125 | 53 | 0 | 68 | 192 | 1 | 125 | 3.99e-51 | 161 |
MS.gene024359.t1 | AT2G21100 | 47.368 | 152 | 79 | 1 | 41 | 191 | 36 | 187 | 8.22e-50 | 160 |
MS.gene024359.t1 | AT2G21100 | 47.368 | 152 | 79 | 1 | 41 | 191 | 36 | 187 | 8.22e-50 | 160 |
MS.gene024359.t1 | AT3G13662 | 51.351 | 148 | 69 | 2 | 31 | 178 | 27 | 171 | 1.09e-49 | 159 |
MS.gene024359.t1 | AT1G22900 | 50.331 | 151 | 72 | 2 | 42 | 191 | 45 | 193 | 9.46e-49 | 157 |
MS.gene024359.t1 | AT5G42500 | 46.000 | 150 | 78 | 2 | 43 | 191 | 38 | 185 | 3.61e-47 | 153 |
MS.gene024359.t1 | AT5G42510 | 45.333 | 150 | 79 | 2 | 43 | 191 | 35 | 182 | 5.17e-46 | 150 |
MS.gene024359.t1 | AT4G38700 | 40.385 | 156 | 86 | 3 | 44 | 192 | 35 | 190 | 1.15e-36 | 126 |
MS.gene024359.t1 | AT3G58090 | 49.091 | 110 | 56 | 0 | 82 | 191 | 162 | 271 | 1.95e-36 | 128 |
MS.gene024359.t1 | AT2G21110 | 38.710 | 155 | 90 | 1 | 43 | 192 | 32 | 186 | 9.55e-35 | 121 |
MS.gene024359.t1 | AT4G11210 | 28.743 | 167 | 112 | 4 | 27 | 192 | 24 | 184 | 2.75e-14 | 68.2 |
MS.gene024359.t1 | AT4G11180 | 29.814 | 161 | 99 | 5 | 31 | 187 | 29 | 179 | 7.26e-11 | 58.9 |
Find 40 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTAGCACCATCACTATTT+TGG | 0.149780 | 7.4:-33541658 | MS.gene024359:CDS |
AATTCAAGTCCTAAGGTTAA+AGG | 0.191399 | 7.4:+33541789 | None:intergenic |
GTCTAATGAACGCATGAAAT+TGG | 0.290862 | 7.4:+33541974 | None:intergenic |
AGACCACTGCCACCAATTAT+AGG | 0.303781 | 7.4:+33541600 | None:intergenic |
GTTAGGGAAATGCCTATAAT+TGG | 0.317348 | 7.4:-33541612 | MS.gene024359:CDS |
GGAGAAAGAAGATGGAGAAT+TGG | 0.330877 | 7.4:+33542045 | None:intergenic |
ACTTGAATTGAGTTCCAAAT+TGG | 0.341559 | 7.4:-33541775 | MS.gene024359:CDS |
TAAGCCATTTAAAATTCTAT+TGG | 0.343050 | 7.4:-33541914 | MS.gene024359:CDS |
TCTCTAAATTTAATTCTTTG+AGG | 0.362138 | 7.4:+33541952 | None:intergenic |
TCCCTAACCTTATCATAAAC+AGG | 0.368028 | 7.4:+33541627 | None:intergenic |
ATTCAAGTCCTAAGGTTAAA+GGG | 0.384454 | 7.4:+33541790 | None:intergenic |
ATCCTGTTTATGATAAGGTT+AGG | 0.398598 | 7.4:-33541629 | MS.gene024359:CDS |
ATGCTCAACTTAGAACTCAT+TGG | 0.409836 | 7.4:-33541557 | MS.gene024359:CDS |
GGAACAATTTGTATTGAAGA+AGG | 0.421585 | 7.4:+33541867 | None:intergenic |
GAGGAATCCTGTTTATGATA+AGG | 0.426161 | 7.4:-33541634 | MS.gene024359:CDS |
ATTGAGAACCCTTTAACCTT+AGG | 0.426768 | 7.4:-33541798 | MS.gene024359:CDS |
TATTGGCATGACATAGTTAG+TGG | 0.428044 | 7.4:-33541897 | MS.gene024359:CDS |
TGCTTTGATTAAAGATGTAA+AGG | 0.447724 | 7.4:+33542010 | None:intergenic |
AACTATAGCATCATATGTCT+TGG | 0.451960 | 7.4:+33541527 | None:intergenic |
TCCTGTTTATGATAAGGTTA+GGG | 0.471393 | 7.4:-33541628 | MS.gene024359:CDS |
GGTGAAGAGGAGAAAGAAGA+TGG | 0.478393 | 7.4:+33542037 | None:intergenic |
GGAACTCAATTCAAGTCCTA+AGG | 0.481627 | 7.4:+33541782 | None:intergenic |
CAAAATTCATAGCCATGATA+AGG | 0.483642 | 7.4:+33541703 | None:intergenic |
GCTTTGATTAAAGATGTAAA+GGG | 0.491098 | 7.4:+33542011 | None:intergenic |
GAGCATATCCTCTAGCAAAT+CGG | 0.492927 | 7.4:+33541574 | None:intergenic |
GAATTGAGTTCCAAATTGGT+TGG | 0.495087 | 7.4:-33541771 | MS.gene024359:CDS |
GAACAATTTGTATTGAAGAA+GGG | 0.503131 | 7.4:+33541868 | None:intergenic |
ATGTAAAGGGAGTGGTGAAG+AGG | 0.506300 | 7.4:+33542024 | None:intergenic |
TACCTCACTTTGTGATGTTG+AGG | 0.511706 | 7.4:+33541728 | None:intergenic |
ATGCCTATAATTGGTGGCAG+TGG | 0.539037 | 7.4:-33541603 | MS.gene024359:CDS |
GATTAAAGATGTAAAGGGAG+TGG | 0.544683 | 7.4:+33542016 | None:intergenic |
AGGGAAATGCCTATAATTGG+TGG | 0.574338 | 7.4:-33541609 | MS.gene024359:CDS |
AAATTGGTTGGAAAAGCACA+AGG | 0.580992 | 7.4:-33541759 | MS.gene024359:CDS |
GTTAACTAAACCAAAGGCAG+TGG | 0.584234 | 7.4:+33541824 | None:intergenic |
AAGTGAGGTAGACCTTATCA+TGG | 0.591488 | 7.4:-33541715 | MS.gene024359:CDS |
AATCATGTTAACTAAACCAA+AGG | 0.600759 | 7.4:+33541818 | None:intergenic |
TGCCTCAACATCACAAAGTG+AGG | 0.629959 | 7.4:-33541730 | MS.gene024359:CDS |
ATTCCTCCCCAAAATAGTGA+TGG | 0.635430 | 7.4:+33541650 | None:intergenic |
ATTATTGAAGGAAAGTACAA+TGG | 0.648578 | 7.4:-33541678 | MS.gene024359:CDS |
AATTGGTTGGAAAAGCACAA+GGG | 0.705686 | 7.4:-33541758 | MS.gene024359:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCTCTAAATTTAATTCTTTG+AGG | + | chr7.4:33541601-33541620 | None:intergenic | 20.0% |
!!! | ATGAATTTTGCTATTATTGA+AGG | - | chr7.4:33541860-33541879 | MS.gene024359:CDS | 20.0% |
!!! | TAAGCCATTTAAAATTCTAT+TGG | - | chr7.4:33541636-33541655 | MS.gene024359:CDS | 20.0% |
! | AATCATGTTAACTAAACCAA+AGG | + | chr7.4:33541735-33541754 | None:intergenic | 25.0% |
! | GAACAATTTGTATTGAAGAA+GGG | + | chr7.4:33541685-33541704 | None:intergenic | 25.0% |
! | GCTTTGATTAAAGATGTAAA+GGG | + | chr7.4:33541542-33541561 | None:intergenic | 25.0% |
! | TGCTTTGATTAAAGATGTAA+AGG | + | chr7.4:33541543-33541562 | None:intergenic | 25.0% |
!! | ATTATTGAAGGAAAGTACAA+TGG | - | chr7.4:33541872-33541891 | MS.gene024359:CDS | 25.0% |
!! | CATGCCAATAGAATTTTAAA+TGG | + | chr7.4:33541643-33541662 | None:intergenic | 25.0% |
AACTATAGCATCATATGTCT+TGG | + | chr7.4:33542026-33542045 | None:intergenic | 30.0% | |
AATTCAAGTCCTAAGGTTAA+AGG | + | chr7.4:33541764-33541783 | None:intergenic | 30.0% | |
ACTTGAATTGAGTTCCAAAT+TGG | - | chr7.4:33541775-33541794 | MS.gene024359:CDS | 30.0% | |
ATCCTGTTTATGATAAGGTT+AGG | - | chr7.4:33541921-33541940 | MS.gene024359:CDS | 30.0% | |
ATTCAAGTCCTAAGGTTAAA+GGG | + | chr7.4:33541763-33541782 | None:intergenic | 30.0% | |
CAAAATTCATAGCCATGATA+AGG | + | chr7.4:33541850-33541869 | None:intergenic | 30.0% | |
GGAACAATTTGTATTGAAGA+AGG | + | chr7.4:33541686-33541705 | None:intergenic | 30.0% | |
TCCTGTTTATGATAAGGTTA+GGG | - | chr7.4:33541922-33541941 | MS.gene024359:CDS | 30.0% | |
ATGCTCAACTTAGAACTCAT+TGG | - | chr7.4:33541993-33542012 | MS.gene024359:CDS | 35.0% | |
ATTGAGAACCCTTTAACCTT+AGG | - | chr7.4:33541752-33541771 | MS.gene024359:CDS | 35.0% | |
GAATTGAGTTCCAAATTGGT+TGG | - | chr7.4:33541779-33541798 | MS.gene024359:CDS | 35.0% | |
GAGGAATCCTGTTTATGATA+AGG | - | chr7.4:33541916-33541935 | MS.gene024359:CDS | 35.0% | |
GATTAAAGATGTAAAGGGAG+TGG | + | chr7.4:33541537-33541556 | None:intergenic | 35.0% | |
GTCTAATGAACGCATGAAAT+TGG | + | chr7.4:33541579-33541598 | None:intergenic | 35.0% | |
GTTAGGGAAATGCCTATAAT+TGG | - | chr7.4:33541938-33541957 | MS.gene024359:CDS | 35.0% | |
TATTGGCATGACATAGTTAG+TGG | - | chr7.4:33541653-33541672 | MS.gene024359:CDS | 35.0% | |
TCCCTAACCTTATCATAAAC+AGG | + | chr7.4:33541926-33541945 | None:intergenic | 35.0% | |
! | AAATTGGTTGGAAAAGCACA+AGG | - | chr7.4:33541791-33541810 | MS.gene024359:CDS | 35.0% |
! | AATTGGTTGGAAAAGCACAA+GGG | - | chr7.4:33541792-33541811 | MS.gene024359:CDS | 35.0% |
! | TTGTGCTTTTCCAACCAATT+TGG | + | chr7.4:33541792-33541811 | None:intergenic | 35.0% |
AAAAACTCAACCACTGCCTT+TGG | - | chr7.4:33541716-33541735 | MS.gene024359:CDS | 40.0% | |
AAGTGAGGTAGACCTTATCA+TGG | - | chr7.4:33541835-33541854 | MS.gene024359:CDS | 40.0% | |
AGGGAAATGCCTATAATTGG+TGG | - | chr7.4:33541941-33541960 | MS.gene024359:CDS | 40.0% | |
ATTCCTCCCCAAAATAGTGA+TGG | + | chr7.4:33541903-33541922 | None:intergenic | 40.0% | |
GAGCATATCCTCTAGCAAAT+CGG | + | chr7.4:33541979-33541998 | None:intergenic | 40.0% | |
GGAACTCAATTCAAGTCCTA+AGG | + | chr7.4:33541771-33541790 | None:intergenic | 40.0% | |
GGAGAAAGAAGATGGAGAAT+TGG | + | chr7.4:33541508-33541527 | None:intergenic | 40.0% | |
GTTAACTAAACCAAAGGCAG+TGG | + | chr7.4:33541729-33541748 | None:intergenic | 40.0% | |
TACCTCACTTTGTGATGTTG+AGG | + | chr7.4:33541825-33541844 | None:intergenic | 40.0% | |
! | GGTAGCACCATCACTATTTT+GGG | - | chr7.4:33541893-33541912 | MS.gene024359:CDS | 40.0% |
! | GTAGCACCATCACTATTTTG+GGG | - | chr7.4:33541894-33541913 | MS.gene024359:CDS | 40.0% |
! | TGGTAGCACCATCACTATTT+TGG | - | chr7.4:33541892-33541911 | MS.gene024359:CDS | 40.0% |
!! | GCAGTGGTTGAGTTTTTCAA+AGG | + | chr7.4:33541713-33541732 | None:intergenic | 40.0% |
!! | GTGGTTGAGTTTTTCAAAGG+TGG | + | chr7.4:33541710-33541729 | None:intergenic | 40.0% |
!! | GTTGAGTTTTTCAAAGGTGG+TGG | + | chr7.4:33541707-33541726 | None:intergenic | 40.0% |
AGACCACTGCCACCAATTAT+AGG | + | chr7.4:33541953-33541972 | None:intergenic | 45.0% | |
ATGTAAAGGGAGTGGTGAAG+AGG | + | chr7.4:33541529-33541548 | None:intergenic | 45.0% | |
GGTGAAGAGGAGAAAGAAGA+TGG | + | chr7.4:33541516-33541535 | None:intergenic | 45.0% | |
TGCCTCAACATCACAAAGTG+AGG | - | chr7.4:33541820-33541839 | MS.gene024359:CDS | 45.0% | |
! | ATGCCTATAATTGGTGGCAG+TGG | - | chr7.4:33541947-33541966 | MS.gene024359:CDS | 45.0% |
!!! | GGTCTTTTCCGATTTGCTAG+AGG | - | chr7.4:33541968-33541987 | MS.gene024359:CDS | 45.0% |
!! | GCACCATCACTATTTTGGGG+AGG | - | chr7.4:33541897-33541916 | MS.gene024359:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 33541497 | 33542075 | 33541497 | ID=MS.gene024359 |
chr7.4 | mRNA | 33541497 | 33542075 | 33541497 | ID=MS.gene024359.t1;Parent=MS.gene024359 |
chr7.4 | exon | 33541497 | 33542075 | 33541497 | ID=MS.gene024359.t1.exon1;Parent=MS.gene024359.t1 |
chr7.4 | CDS | 33541497 | 33542075 | 33541497 | ID=cds.MS.gene024359.t1;Parent=MS.gene024359.t1 |
Gene Sequence |
Protein sequence |