Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034592.t1 | XP_013467712.1 | 97.9 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 1.10E-97 | 365.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034592.t1 | Q9SS03 | 49.7 | 193 | 91 | 4 | 1 | 191 | 1 | 189 | 3.6e-44 | 179.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034592.t1 | A0A072VI95 | 97.9 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 8.1e-98 | 365.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene071329 | MS.gene034592 | PPI |
MS.gene034592 | MS.gene06033 | PPI |
MS.gene90969 | MS.gene034592 | PPI |
MS.gene46462 | MS.gene034592 | PPI |
MS.gene98692 | MS.gene034592 | PPI |
MS.gene06035 | MS.gene034592 | PPI |
MS.gene057717 | MS.gene034592 | PPI |
MS.gene24969 | MS.gene034592 | PPI |
MS.gene33677 | MS.gene034592 | PPI |
MS.gene55766 | MS.gene034592 | PPI |
MS.gene33420 | MS.gene034592 | PPI |
MS.gene024359 | MS.gene034592 | PPI |
MS.gene24971 | MS.gene034592 | PPI |
MS.gene52084 | MS.gene034592 | PPI |
MS.gene39163 | MS.gene034592 | PPI |
MS.gene003512 | MS.gene034592 | PPI |
MS.gene068578 | MS.gene034592 | PPI |
MS.gene33418 | MS.gene034592 | PPI |
MS.gene048891 | MS.gene034592 | PPI |
MS.gene034592 | MS.gene068292 | PPI |
MS.gene55764 | MS.gene034592 | PPI |
MS.gene33676 | MS.gene034592 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034592.t1 | MTR_1g054525 | 97.917 | 192 | 4 | 0 | 1 | 192 | 1 | 192 | 5.59e-138 | 383 |
MS.gene034592.t1 | MTR_4g013345 | 56.322 | 174 | 74 | 1 | 21 | 192 | 23 | 196 | 7.02e-67 | 203 |
MS.gene034592.t1 | MTR_4g013335 | 58.788 | 165 | 64 | 2 | 30 | 192 | 34 | 196 | 8.45e-67 | 203 |
MS.gene034592.t1 | MTR_4g013350 | 56.284 | 183 | 75 | 2 | 15 | 192 | 15 | 197 | 2.07e-66 | 202 |
MS.gene034592.t1 | MTR_4g013320 | 57.576 | 165 | 68 | 1 | 30 | 192 | 35 | 199 | 3.93e-66 | 201 |
MS.gene034592.t1 | MTR_4g013330 | 56.287 | 167 | 69 | 2 | 30 | 192 | 33 | 199 | 1.10e-63 | 195 |
MS.gene034592.t1 | MTR_4g013325 | 62.759 | 145 | 52 | 1 | 50 | 192 | 55 | 199 | 6.09e-62 | 191 |
MS.gene034592.t1 | MTR_7g093850 | 49.000 | 200 | 88 | 6 | 1 | 192 | 1 | 194 | 9.26e-60 | 185 |
MS.gene034592.t1 | MTR_4g013310 | 50.610 | 164 | 81 | 0 | 29 | 192 | 34 | 197 | 1.51e-59 | 185 |
MS.gene034592.t1 | MTR_7g093820 | 48.990 | 198 | 91 | 5 | 1 | 192 | 1 | 194 | 5.42e-59 | 183 |
MS.gene034592.t1 | MTR_7g093830 | 49.231 | 195 | 94 | 4 | 1 | 192 | 1 | 193 | 4.96e-58 | 181 |
MS.gene034592.t1 | MTR_7g070390 | 48.404 | 188 | 88 | 5 | 13 | 192 | 6 | 192 | 2.60e-56 | 176 |
MS.gene034592.t1 | MTR_7g093870 | 51.765 | 170 | 74 | 4 | 30 | 192 | 25 | 193 | 1.00e-54 | 173 |
MS.gene034592.t1 | MTR_4g013385 | 46.409 | 181 | 92 | 3 | 14 | 192 | 13 | 190 | 1.23e-54 | 172 |
MS.gene034592.t1 | MTR_0433s0040 | 46.409 | 181 | 92 | 3 | 14 | 192 | 13 | 190 | 1.23e-54 | 172 |
MS.gene034592.t1 | MTR_7g093790 | 46.486 | 185 | 92 | 4 | 11 | 192 | 11 | 191 | 1.89e-54 | 171 |
MS.gene034592.t1 | MTR_4g013770 | 46.591 | 176 | 89 | 3 | 20 | 192 | 18 | 191 | 1.25e-50 | 162 |
MS.gene034592.t1 | MTR_4g073950 | 50.000 | 152 | 73 | 2 | 44 | 192 | 41 | 192 | 8.04e-49 | 157 |
MS.gene034592.t1 | MTR_4g013355 | 44.809 | 183 | 82 | 4 | 17 | 192 | 9 | 179 | 1.25e-46 | 151 |
MS.gene034592.t1 | MTR_4g078885 | 47.651 | 149 | 74 | 3 | 46 | 192 | 39 | 185 | 5.94e-45 | 147 |
MS.gene034592.t1 | MTR_3g034030 | 47.651 | 149 | 74 | 3 | 46 | 192 | 39 | 185 | 2.75e-44 | 145 |
MS.gene034592.t1 | MTR_3g105630 | 44.385 | 187 | 91 | 5 | 14 | 192 | 8 | 189 | 8.88e-44 | 144 |
MS.gene034592.t1 | MTR_1g056370 | 48.344 | 151 | 74 | 3 | 44 | 191 | 36 | 185 | 2.57e-43 | 143 |
MS.gene034592.t1 | MTR_5g096120 | 43.455 | 191 | 98 | 4 | 8 | 192 | 3 | 189 | 5.19e-42 | 140 |
MS.gene034592.t1 | MTR_3g105640 | 46.154 | 156 | 78 | 4 | 42 | 192 | 34 | 188 | 1.34e-39 | 134 |
MS.gene034592.t1 | MTR_4g122110 | 36.301 | 146 | 91 | 1 | 49 | 192 | 35 | 180 | 1.74e-26 | 100 |
MS.gene034592.t1 | MTR_4g122130 | 36.601 | 153 | 91 | 2 | 46 | 192 | 28 | 180 | 1.92e-25 | 97.4 |
MS.gene034592.t1 | MTR_4g049570 | 33.824 | 136 | 90 | 0 | 43 | 178 | 27 | 162 | 1.86e-18 | 79.0 |
MS.gene034592.t1 | MTR_4g049550 | 30.899 | 178 | 102 | 3 | 7 | 176 | 4 | 168 | 5.44e-18 | 77.8 |
MS.gene034592.t1 | MTR_8g099115 | 33.099 | 142 | 84 | 4 | 42 | 175 | 32 | 170 | 8.55e-15 | 69.7 |
MS.gene034592.t1 | MTR_1g046490 | 37.778 | 90 | 55 | 1 | 81 | 170 | 121 | 209 | 2.51e-14 | 69.3 |
MS.gene034592.t1 | MTR_1g046800 | 35.780 | 109 | 67 | 2 | 62 | 170 | 118 | 223 | 5.55e-14 | 68.6 |
MS.gene034592.t1 | MTR_1g046500 | 38.889 | 90 | 54 | 1 | 81 | 170 | 135 | 223 | 9.77e-14 | 67.8 |
MS.gene034592.t1 | MTR_1g115510 | 31.765 | 170 | 99 | 6 | 37 | 191 | 186 | 353 | 7.61e-13 | 66.2 |
MS.gene034592.t1 | MTR_7g021300 | 30.986 | 142 | 84 | 5 | 60 | 189 | 248 | 387 | 5.18e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034592.t1 | AT1G55210 | 49.744 | 195 | 87 | 5 | 1 | 192 | 1 | 187 | 3.01e-60 | 186 |
MS.gene034592.t1 | AT1G55210 | 49.744 | 195 | 87 | 5 | 1 | 192 | 1 | 187 | 3.01e-60 | 186 |
MS.gene034592.t1 | AT1G58170 | 55.263 | 152 | 66 | 1 | 43 | 192 | 34 | 185 | 2.25e-59 | 184 |
MS.gene034592.t1 | AT1G65870 | 52.907 | 172 | 76 | 3 | 22 | 191 | 21 | 189 | 3.53e-58 | 181 |
MS.gene034592.t1 | AT5G49040 | 47.778 | 180 | 92 | 1 | 15 | 192 | 12 | 191 | 1.33e-57 | 179 |
MS.gene034592.t1 | AT5G42500 | 52.349 | 149 | 71 | 0 | 43 | 191 | 37 | 185 | 2.67e-56 | 176 |
MS.gene034592.t1 | AT1G22900 | 48.571 | 175 | 85 | 2 | 17 | 191 | 24 | 193 | 3.80e-55 | 173 |
MS.gene034592.t1 | AT5G42510 | 51.007 | 149 | 73 | 0 | 43 | 191 | 34 | 182 | 9.99e-55 | 172 |
MS.gene034592.t1 | AT3G13650 | 47.179 | 195 | 91 | 6 | 1 | 192 | 1 | 186 | 7.39e-52 | 165 |
MS.gene034592.t1 | AT3G13662 | 53.103 | 145 | 65 | 2 | 33 | 177 | 27 | 168 | 7.88e-51 | 162 |
MS.gene034592.t1 | AT2G21100 | 49.324 | 148 | 73 | 1 | 46 | 191 | 40 | 187 | 2.31e-49 | 159 |
MS.gene034592.t1 | AT2G21100 | 49.324 | 148 | 73 | 1 | 46 | 191 | 40 | 187 | 2.31e-49 | 159 |
MS.gene034592.t1 | AT5G49030 | 46.821 | 173 | 92 | 0 | 15 | 187 | 12 | 184 | 5.67e-48 | 167 |
MS.gene034592.t1 | AT3G13660 | 58.120 | 117 | 47 | 1 | 78 | 192 | 9 | 125 | 1.14e-42 | 139 |
MS.gene034592.t1 | AT4G38700 | 37.895 | 190 | 105 | 6 | 13 | 192 | 4 | 190 | 1.03e-38 | 131 |
MS.gene034592.t1 | AT2G21110 | 38.919 | 185 | 101 | 3 | 14 | 192 | 8 | 186 | 1.39e-38 | 131 |
MS.gene034592.t1 | AT3G58090 | 55.046 | 109 | 47 | 1 | 85 | 191 | 163 | 271 | 5.92e-36 | 127 |
MS.gene034592.t1 | AT1G64160 | 30.469 | 128 | 82 | 3 | 44 | 167 | 31 | 155 | 2.78e-13 | 65.5 |
MS.gene034592.t1 | AT4G23690 | 33.103 | 145 | 81 | 5 | 30 | 169 | 29 | 162 | 3.73e-13 | 65.1 |
MS.gene034592.t1 | AT3G24020 | 28.889 | 135 | 87 | 3 | 61 | 189 | 110 | 241 | 1.09e-12 | 64.7 |
MS.gene034592.t1 | AT4G13580 | 28.889 | 135 | 87 | 3 | 61 | 189 | 111 | 242 | 4.04e-12 | 63.2 |
Find 55 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGAAGTAATCTCAGTGTTT+TGG | 0.259860 | 1.3:-38951679 | MS.gene034592:CDS |
TGTGGAGTCCTAGGGTTGTT+GGG | 0.287660 | 1.3:+38951973 | None:intergenic |
GGAGTTTGAGAAGAAAAGTT+TGG | 0.338843 | 1.3:+38952076 | None:intergenic |
TCCTAGGGTTGTTGGGGAGA+TGG | 0.354171 | 1.3:+38951980 | None:intergenic |
GAATTCGGACGCGCTGTTAA+CGG | 0.355279 | 1.3:+38951810 | None:intergenic |
GAGGAAGGAGATGAGGGATA+AGG | 0.365889 | 1.3:+38952049 | None:intergenic |
AATTCGGACGCGCTGTTAAC+GGG | 0.371804 | 1.3:+38951811 | None:intergenic |
AGGAAGGAGATGAGGGATAA+GGG | 0.373236 | 1.3:+38952050 | None:intergenic |
TTGTGGAGTCCTAGGGTTGT+TGG | 0.373760 | 1.3:+38951972 | None:intergenic |
TTTGAGGTTTGTGGAGTCCT+AGG | 0.379817 | 1.3:+38951964 | None:intergenic |
ATGCCGGTTGTGGGTGGTAG+TGG | 0.389118 | 1.3:-38951624 | MS.gene034592:CDS |
TTCACACGAGGGAAGTATAA+TGG | 0.406207 | 1.3:-38951699 | MS.gene034592:CDS |
AGGCGACCCGAACAGCAGTT+TGG | 0.431782 | 1.3:+38951892 | None:intergenic |
GAATTCAAACTCCGAGGTTG+TGG | 0.441035 | 1.3:-38951793 | MS.gene034592:CDS |
ACAACCTCGGAGTTTGAATT+CGG | 0.441332 | 1.3:+38951795 | None:intergenic |
CGTGAGAGAGATGCCGGTTG+TGG | 0.463566 | 1.3:-38951634 | MS.gene034592:CDS |
AACCCACTACCACCCACAAC+CGG | 0.476541 | 1.3:+38951621 | None:intergenic |
TTGAGGTTTGTGGAGTCCTA+GGG | 0.486598 | 1.3:+38951965 | None:intergenic |
GATGAAGAGGAAGGAGATGA+GGG | 0.486928 | 1.3:+38952043 | None:intergenic |
GTGGAGTCCTAGGGTTGTTG+GGG | 0.490912 | 1.3:+38951974 | None:intergenic |
TGGGTTGTTCAGATTTGCAA+GGG | 0.492504 | 1.3:-38951604 | MS.gene034592:CDS |
CGTGGAAGTAGAAGCGGATG+TGG | 0.512512 | 1.3:+38951934 | None:intergenic |
TGCCGGTTGTGGGTGGTAGT+GGG | 0.514800 | 1.3:-38951623 | MS.gene034592:CDS |
GGAGATGAGGGATAAGGGAA+AGG | 0.523065 | 1.3:+38952055 | None:intergenic |
TCAGCTTCACAGAGTGAAGT+GGG | 0.523071 | 1.3:-38951747 | MS.gene034592:CDS |
TTCTACTTCCACGACATCAT+CGG | 0.523779 | 1.3:-38951924 | MS.gene034592:CDS |
TGATGAAGAGGAAGGAGATG+AGG | 0.529995 | 1.3:+38952042 | None:intergenic |
GTGGGTTGTTCAGATTTGCA+AGG | 0.530567 | 1.3:-38951605 | MS.gene034592:CDS |
TGAGAAGAAAAGTTTGGCCA+TGG | 0.531092 | 1.3:+38952082 | None:intergenic |
GTGAGAGAGATGCCGGTTGT+GGG | 0.540631 | 1.3:-38951633 | MS.gene034592:CDS |
ACCATCTCCCCAACAACCCT+AGG | 0.552762 | 1.3:-38951981 | MS.gene034592:CDS |
AAATGCATTAGAAGCTATTG+TGG | 0.554492 | 1.3:-38951553 | MS.gene034592:CDS |
GAGTGAAGTGGGGTTTCTCA+TGG | 0.555374 | 1.3:-38951736 | MS.gene034592:CDS |
CTTAACTTTGCTTTCACACG+AGG | 0.556653 | 1.3:-38951711 | MS.gene034592:CDS |
TTGTGCTCTTCCCACAACCT+CGG | 0.556899 | 1.3:+38951782 | None:intergenic |
AATTCAAACTCCGAGGTTGT+GGG | 0.568747 | 1.3:-38951792 | MS.gene034592:CDS |
ATCCGCCGTGAGAGAGATGC+CGG | 0.574343 | 1.3:-38951640 | MS.gene034592:CDS |
TGGTAATGGTGGTGATGAAG+AGG | 0.589837 | 1.3:+38952030 | None:intergenic |
GAGGTTGTGGGAAGAGCACA+AGG | 0.595582 | 1.3:-38951780 | MS.gene034592:CDS |
AACCACTGAACCAAAACCCG+TGG | 0.598362 | 1.3:+38951845 | None:intergenic |
ACCACTGAACCAAAACCCGT+GGG | 0.602599 | 1.3:+38951846 | None:intergenic |
TTCAGCTTCACAGAGTGAAG+TGG | 0.609451 | 1.3:-38951748 | MS.gene034592:CDS |
CACAACCGGCATCTCTCTCA+CGG | 0.612074 | 1.3:+38951635 | None:intergenic |
TACTTCCACGACATCATCGG+TGG | 0.615547 | 1.3:-38951921 | MS.gene034592:CDS |
CACTGAACCAAAACCCGTGG+GGG | 0.622706 | 1.3:+38951848 | None:intergenic |
TGATGTCGTGGAAGTAGAAG+CGG | 0.627685 | 1.3:+38951928 | None:intergenic |
CAGCTTCACAGAGTGAAGTG+GGG | 0.638369 | 1.3:-38951746 | MS.gene034592:CDS |
AGAGAGATGCCGGTTGTGGG+TGG | 0.647672 | 1.3:-38951630 | MS.gene034592:CDS |
AATGGTGGTGATGAAGAGGA+AGG | 0.649403 | 1.3:+38952034 | None:intergenic |
GGGTTGTTCAGATTTGCAAG+GGG | 0.683015 | 1.3:-38951603 | MS.gene034592:CDS |
GGTTGTTCAGATTTGCAAGG+GGG | 0.683578 | 1.3:-38951602 | MS.gene034592:CDS |
TTAACTTTGCTTTCACACGA+GGG | 0.700908 | 1.3:-38951710 | MS.gene034592:CDS |
CCACTGAACCAAAACCCGTG+GGG | 0.704423 | 1.3:+38951847 | None:intergenic |
AACCGGCATCTCTCTCACGG+CGG | 0.738069 | 1.3:+38951638 | None:intergenic |
GCGTCCGAATTCAAACTCCG+AGG | 0.753033 | 1.3:-38951799 | MS.gene034592:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGATGGTTTTTATGAAAGAA+TGG | + | chr1.3:38951610-38951629 | None:intergenic | 25.0% |
!! | ATGGTTTTTATGAAAGAATG+GGG | + | chr1.3:38951608-38951627 | None:intergenic | 25.0% |
!! | GATGGTTTTTATGAAAGAAT+GGG | + | chr1.3:38951609-38951628 | None:intergenic | 25.0% |
AAATGCATTAGAAGCTATTG+TGG | - | chr1.3:38952051-38952070 | MS.gene034592:CDS | 30.0% | |
AAAAAACCAAACTGCTGTTC+GGG | - | chr1.3:38951706-38951725 | MS.gene034592:CDS | 35.0% | |
GAAAAAACCAAACTGCTGTT+CGG | - | chr1.3:38951705-38951724 | MS.gene034592:CDS | 35.0% | |
GGAGTTTGAGAAGAAAAGTT+TGG | + | chr1.3:38951531-38951550 | None:intergenic | 35.0% | |
TTAACTTTGCTTTCACACGA+GGG | - | chr1.3:38951894-38951913 | MS.gene034592:CDS | 35.0% | |
! | GGAAGTAATCTCAGTGTTTT+GGG | - | chr1.3:38951926-38951945 | MS.gene034592:CDS | 35.0% |
! | TGGAAGTAATCTCAGTGTTT+TGG | - | chr1.3:38951925-38951944 | MS.gene034592:CDS | 35.0% |
!!! | TTTTGGTTCAGTGGTTATGA+TGG | - | chr1.3:38951766-38951785 | MS.gene034592:CDS | 35.0% |
AATTCAAACTCCGAGGTTGT+GGG | - | chr1.3:38951812-38951831 | MS.gene034592:CDS | 40.0% | |
ACAACCTCGGAGTTTGAATT+CGG | + | chr1.3:38951812-38951831 | None:intergenic | 40.0% | |
CTTAACTTTGCTTTCACACG+AGG | - | chr1.3:38951893-38951912 | MS.gene034592:CDS | 40.0% | |
TGGGTTGTTCAGATTTGCAA+GGG | - | chr1.3:38952000-38952019 | MS.gene034592:CDS | 40.0% | |
TTCTACTTCCACGACATCAT+CGG | - | chr1.3:38951680-38951699 | MS.gene034592:CDS | 40.0% | |
! | TTCACACGAGGGAAGTATAA+TGG | - | chr1.3:38951905-38951924 | MS.gene034592:CDS | 40.0% |
!! | TTTTTCAGTGGTTGGAGATG+AGG | + | chr1.3:38951735-38951754 | None:intergenic | 40.0% |
!!! | GGCTTAGTTTTTGAGGTTTG+TGG | + | chr1.3:38951652-38951671 | None:intergenic | 40.0% |
!!! | GTAATCTCAGTGTTTTGGGA+AGG | - | chr1.3:38951930-38951949 | MS.gene034592:CDS | 40.0% |
AACCACTGAAAAATCCCCCA+CGG | - | chr1.3:38951742-38951761 | MS.gene034592:CDS | 45.0% | |
AGGAAGGAGATGAGGGATAA+GGG | + | chr1.3:38951557-38951576 | None:intergenic | 45.0% | |
GAATTCAAACTCCGAGGTTG+TGG | - | chr1.3:38951811-38951830 | MS.gene034592:CDS | 45.0% | |
GATGAAGAGGAAGGAGATGA+GGG | + | chr1.3:38951564-38951583 | None:intergenic | 45.0% | |
GGGTTGTTCAGATTTGCAAG+GGG | - | chr1.3:38952001-38952020 | MS.gene034592:CDS | 45.0% | |
GGTTGTTCAGATTTGCAAGG+GGG | - | chr1.3:38952002-38952021 | MS.gene034592:CDS | 45.0% | |
TCAGCTTCACAGAGTGAAGT+GGG | - | chr1.3:38951857-38951876 | MS.gene034592:CDS | 45.0% | |
TGATGAAGAGGAAGGAGATG+AGG | + | chr1.3:38951565-38951584 | None:intergenic | 45.0% | |
TGATGTCGTGGAAGTAGAAG+CGG | + | chr1.3:38951679-38951698 | None:intergenic | 45.0% | |
TTCAGCTTCACAGAGTGAAG+TGG | - | chr1.3:38951856-38951875 | MS.gene034592:CDS | 45.0% | |
TTGAGGTTTGTGGAGTCCTA+GGG | + | chr1.3:38951642-38951661 | None:intergenic | 45.0% | |
! | AATGGTGGTGATGAAGAGGA+AGG | + | chr1.3:38951573-38951592 | None:intergenic | 45.0% |
! | GAAAGAATGGGGTTTTGCTG+TGG | + | chr1.3:38951597-38951616 | None:intergenic | 45.0% |
! | GTGGGTTGTTCAGATTTGCA+AGG | - | chr1.3:38951999-38952018 | MS.gene034592:CDS | 45.0% |
! | TTTGAGGTTTGTGGAGTCCT+AGG | + | chr1.3:38951643-38951662 | None:intergenic | 45.0% |
! | TTTTTCCACCGATGATGTCG+TGG | + | chr1.3:38951691-38951710 | None:intergenic | 45.0% |
!! | ATGGGGTTTTGCTGTGGTAA+TGG | + | chr1.3:38951591-38951610 | None:intergenic | 45.0% |
!! | CGGATGTGGCTTAGTTTTTG+AGG | + | chr1.3:38951659-38951678 | None:intergenic | 45.0% |
!! | TGGTAATGGTGGTGATGAAG+AGG | + | chr1.3:38951577-38951596 | None:intergenic | 45.0% |
AACCACTGAACCAAAACCCG+TGG | + | chr1.3:38951762-38951781 | None:intergenic | 50.0% | |
AATTCGGACGCGCTGTTAAC+GGG | + | chr1.3:38951796-38951815 | None:intergenic | 50.0% | |
ACCACTGAAAAATCCCCCAC+GGG | - | chr1.3:38951743-38951762 | MS.gene034592:CDS | 50.0% | |
ACCACTGAACCAAAACCCGT+GGG | + | chr1.3:38951761-38951780 | None:intergenic | 50.0% | |
CAGCTTCACAGAGTGAAGTG+GGG | - | chr1.3:38951858-38951877 | MS.gene034592:CDS | 50.0% | |
GAATTCGGACGCGCTGTTAA+CGG | + | chr1.3:38951797-38951816 | None:intergenic | 50.0% | |
GAGGAAGGAGATGAGGGATA+AGG | + | chr1.3:38951558-38951577 | None:intergenic | 50.0% | |
GAGTGAAGTGGGGTTTCTCA+TGG | - | chr1.3:38951868-38951887 | MS.gene034592:CDS | 50.0% | |
GGAGATGAGGGATAAGGGAA+AGG | + | chr1.3:38951552-38951571 | None:intergenic | 50.0% | |
TACTTCCACGACATCATCGG+TGG | - | chr1.3:38951683-38951702 | MS.gene034592:CDS | 50.0% | |
TGTGGAGTCCTAGGGTTGTT+GGG | + | chr1.3:38951634-38951653 | None:intergenic | 50.0% | |
TTGTGCTCTTCCCACAACCT+CGG | + | chr1.3:38951825-38951844 | None:intergenic | 50.0% | |
TTGTGGAGTCCTAGGGTTGT+TGG | + | chr1.3:38951635-38951654 | None:intergenic | 50.0% | |
! | GAAAAATCCCCCACGGGTTT+TGG | - | chr1.3:38951749-38951768 | MS.gene034592:CDS | 50.0% |
!! | GTGGGGGATTTTTCAGTGGT+TGG | + | chr1.3:38951743-38951762 | None:intergenic | 50.0% |
!!! | GGGTTTTGCTGTGGTAATGG+TGG | + | chr1.3:38951588-38951607 | None:intergenic | 50.0% |
AACCCACTACCACCCACAAC+CGG | + | chr1.3:38951986-38952005 | None:intergenic | 55.0% | |
ACCATCTCCCCAACAACCCT+AGG | - | chr1.3:38951623-38951642 | MS.gene034592:CDS | 55.0% | |
CACAACCGGCATCTCTCTCA+CGG | + | chr1.3:38951972-38951991 | None:intergenic | 55.0% | |
CACTGAACCAAAACCCGTGG+GGG | + | chr1.3:38951759-38951778 | None:intergenic | 55.0% | |
CCACTGAACCAAAACCCGTG+GGG | + | chr1.3:38951760-38951779 | None:intergenic | 55.0% | |
CGTGGAAGTAGAAGCGGATG+TGG | + | chr1.3:38951673-38951692 | None:intergenic | 55.0% | |
GCGTCCGAATTCAAACTCCG+AGG | - | chr1.3:38951805-38951824 | MS.gene034592:CDS | 55.0% | |
GTGGAGTCCTAGGGTTGTTG+GGG | + | chr1.3:38951633-38951652 | None:intergenic | 55.0% | |
TCCTAGGGTTGTTGGGGAGA+TGG | + | chr1.3:38951627-38951646 | None:intergenic | 55.0% | |
! | GAGGTTGTGGGAAGAGCACA+AGG | - | chr1.3:38951824-38951843 | MS.gene034592:CDS | 55.0% |
! | GTGAGAGAGATGCCGGTTGT+GGG | - | chr1.3:38951971-38951990 | MS.gene034592:CDS | 55.0% |
!! | ACCCGTGGGGGATTTTTCAG+TGG | + | chr1.3:38951747-38951766 | None:intergenic | 55.0% |
AACCGGCATCTCTCTCACGG+CGG | + | chr1.3:38951969-38951988 | None:intergenic | 60.0% | |
AGGCGACCCGAACAGCAGTT+TGG | + | chr1.3:38951715-38951734 | None:intergenic | 60.0% | |
ATCCGCCGTGAGAGAGATGC+CGG | - | chr1.3:38951964-38951983 | MS.gene034592:CDS | 60.0% | |
! | AGAGAGATGCCGGTTGTGGG+TGG | - | chr1.3:38951974-38951993 | MS.gene034592:CDS | 60.0% |
! | ATGCCGGTTGTGGGTGGTAG+TGG | - | chr1.3:38951980-38951999 | MS.gene034592:CDS | 60.0% |
! | CGTGAGAGAGATGCCGGTTG+TGG | - | chr1.3:38951970-38951989 | MS.gene034592:CDS | 60.0% |
! | TGCCGGTTGTGGGTGGTAGT+GGG | - | chr1.3:38951981-38952000 | MS.gene034592:CDS | 60.0% |
!!! | CCCCACGGGTTTTGGTTCAG+TGG | - | chr1.3:38951757-38951776 | MS.gene034592:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 38951524 | 38952102 | 38951524 | ID=MS.gene034592 |
chr1.3 | mRNA | 38951524 | 38952102 | 38951524 | ID=MS.gene034592.t1;Parent=MS.gene034592 |
chr1.3 | exon | 38951524 | 38952102 | 38951524 | ID=MS.gene034592.t1.exon1;Parent=MS.gene034592.t1 |
chr1.3 | CDS | 38951524 | 38952102 | 38951524 | ID=cds.MS.gene034592.t1;Parent=MS.gene034592.t1 |
Gene Sequence |
Protein sequence |