Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39163.t1 | XP_013467712.1 | 96.9 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 8.10E-96 | 359.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39163.t1 | Q9SS03 | 51.8 | 193 | 87 | 4 | 1 | 191 | 1 | 189 | 3.3e-45 | 183.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39163.t1 | A0A072VI95 | 96.9 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 5.8e-96 | 359.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06035 | MS.gene39163 | PPI |
MS.gene39163 | MS.gene33420 | PPI |
MS.gene39163 | MS.gene003512 | PPI |
MS.gene39163 | MS.gene33418 | PPI |
MS.gene39163 | MS.gene068292 | PPI |
MS.gene39163 | MS.gene24969 | PPI |
MS.gene39163 | MS.gene048891 | PPI |
MS.gene55766 | MS.gene39163 | PPI |
MS.gene39163 | MS.gene06033 | PPI |
MS.gene39163 | MS.gene90969 | PPI |
MS.gene024359 | MS.gene39163 | PPI |
MS.gene39163 | MS.gene034592 | PPI |
MS.gene24971 | MS.gene39163 | PPI |
MS.gene39163 | MS.gene52084 | PPI |
MS.gene068578 | MS.gene39163 | PPI |
MS.gene39163 | MS.gene46462 | PPI |
MS.gene39163 | MS.gene057717 | PPI |
MS.gene39163 | MS.gene33676 | PPI |
MS.gene55764 | MS.gene39163 | PPI |
MS.gene39163 | MS.gene33677 | PPI |
MS.gene071329 | MS.gene39163 | PPI |
MS.gene98692 | MS.gene39163 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39163.t1 | MTR_1g054525 | 96.875 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 3.00e-136 | 379 |
MS.gene39163.t1 | MTR_4g013345 | 56.897 | 174 | 73 | 1 | 21 | 192 | 23 | 196 | 1.13e-67 | 205 |
MS.gene39163.t1 | MTR_4g013350 | 57.303 | 178 | 71 | 2 | 20 | 192 | 20 | 197 | 2.80e-67 | 204 |
MS.gene39163.t1 | MTR_4g013335 | 58.788 | 165 | 64 | 2 | 30 | 192 | 34 | 196 | 3.09e-67 | 204 |
MS.gene39163.t1 | MTR_4g013320 | 57.576 | 165 | 68 | 1 | 30 | 192 | 35 | 199 | 1.42e-66 | 202 |
MS.gene39163.t1 | MTR_4g013330 | 56.886 | 167 | 68 | 2 | 30 | 192 | 33 | 199 | 1.25e-64 | 197 |
MS.gene39163.t1 | MTR_4g013325 | 62.759 | 145 | 52 | 1 | 50 | 192 | 55 | 199 | 2.38e-62 | 192 |
MS.gene39163.t1 | MTR_7g093820 | 51.053 | 190 | 88 | 4 | 6 | 192 | 7 | 194 | 7.44e-60 | 185 |
MS.gene39163.t1 | MTR_4g013310 | 50.610 | 164 | 81 | 0 | 29 | 192 | 34 | 197 | 8.64e-60 | 185 |
MS.gene39163.t1 | MTR_7g093850 | 49.000 | 200 | 88 | 6 | 1 | 192 | 1 | 194 | 2.85e-59 | 184 |
MS.gene39163.t1 | MTR_7g093830 | 49.744 | 195 | 93 | 4 | 1 | 192 | 1 | 193 | 9.46e-59 | 182 |
MS.gene39163.t1 | MTR_7g070390 | 48.168 | 191 | 90 | 5 | 10 | 192 | 3 | 192 | 9.06e-58 | 180 |
MS.gene39163.t1 | MTR_7g093790 | 46.667 | 195 | 97 | 4 | 1 | 192 | 1 | 191 | 1.52e-55 | 174 |
MS.gene39163.t1 | MTR_4g013385 | 46.277 | 188 | 91 | 5 | 12 | 192 | 6 | 190 | 2.83e-55 | 174 |
MS.gene39163.t1 | MTR_0433s0040 | 46.277 | 188 | 91 | 5 | 12 | 192 | 6 | 190 | 2.83e-55 | 174 |
MS.gene39163.t1 | MTR_7g093870 | 51.765 | 170 | 74 | 4 | 30 | 192 | 25 | 193 | 1.40e-54 | 173 |
MS.gene39163.t1 | MTR_4g013770 | 46.023 | 176 | 90 | 3 | 20 | 192 | 18 | 191 | 7.75e-50 | 160 |
MS.gene39163.t1 | MTR_4g073950 | 50.000 | 152 | 73 | 2 | 44 | 192 | 41 | 192 | 6.90e-49 | 157 |
MS.gene39163.t1 | MTR_4g013355 | 44.809 | 183 | 82 | 4 | 17 | 192 | 9 | 179 | 3.57e-47 | 152 |
MS.gene39163.t1 | MTR_4g078885 | 48.993 | 149 | 72 | 3 | 46 | 192 | 39 | 185 | 6.91e-46 | 149 |
MS.gene39163.t1 | MTR_3g034030 | 48.993 | 149 | 72 | 3 | 46 | 192 | 39 | 185 | 3.20e-45 | 148 |
MS.gene39163.t1 | MTR_3g105630 | 43.850 | 187 | 92 | 5 | 14 | 192 | 8 | 189 | 4.38e-43 | 142 |
MS.gene39163.t1 | MTR_1g056370 | 47.682 | 151 | 75 | 3 | 44 | 191 | 36 | 185 | 1.85e-42 | 141 |
MS.gene39163.t1 | MTR_5g096120 | 43.850 | 187 | 95 | 4 | 12 | 192 | 7 | 189 | 7.51e-42 | 139 |
MS.gene39163.t1 | MTR_3g105640 | 41.799 | 189 | 100 | 5 | 9 | 192 | 5 | 188 | 1.07e-38 | 131 |
MS.gene39163.t1 | MTR_4g122110 | 36.301 | 146 | 91 | 1 | 49 | 192 | 35 | 180 | 2.98e-26 | 99.4 |
MS.gene39163.t1 | MTR_4g122130 | 36.601 | 153 | 91 | 2 | 46 | 192 | 28 | 180 | 1.48e-25 | 97.4 |
MS.gene39163.t1 | MTR_4g049570 | 33.824 | 136 | 90 | 0 | 43 | 178 | 27 | 162 | 1.71e-18 | 79.0 |
MS.gene39163.t1 | MTR_4g049550 | 29.775 | 178 | 104 | 3 | 7 | 176 | 4 | 168 | 8.28e-17 | 74.7 |
MS.gene39163.t1 | MTR_1g046490 | 38.889 | 90 | 54 | 1 | 81 | 170 | 121 | 209 | 4.12e-15 | 71.2 |
MS.gene39163.t1 | MTR_1g046800 | 36.697 | 109 | 66 | 2 | 62 | 170 | 118 | 223 | 6.73e-15 | 70.9 |
MS.gene39163.t1 | MTR_1g046500 | 40.000 | 90 | 53 | 1 | 81 | 170 | 135 | 223 | 1.52e-14 | 70.1 |
MS.gene39163.t1 | MTR_8g099115 | 32.394 | 142 | 85 | 4 | 42 | 175 | 32 | 170 | 4.58e-14 | 67.8 |
MS.gene39163.t1 | MTR_1g115510 | 32.353 | 170 | 98 | 6 | 37 | 191 | 186 | 353 | 1.29e-13 | 68.6 |
MS.gene39163.t1 | MTR_7g021300 | 31.690 | 142 | 83 | 5 | 60 | 189 | 248 | 387 | 1.34e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39163.t1 | AT1G55210 | 49.744 | 195 | 87 | 5 | 1 | 192 | 1 | 187 | 2.01e-60 | 187 |
MS.gene39163.t1 | AT1G55210 | 49.744 | 195 | 87 | 5 | 1 | 192 | 1 | 187 | 2.01e-60 | 187 |
MS.gene39163.t1 | AT1G58170 | 55.263 | 152 | 66 | 1 | 43 | 192 | 34 | 185 | 1.48e-59 | 184 |
MS.gene39163.t1 | AT1G65870 | 53.488 | 172 | 75 | 3 | 22 | 191 | 21 | 189 | 3.94e-59 | 183 |
MS.gene39163.t1 | AT5G49040 | 47.778 | 180 | 92 | 1 | 15 | 192 | 12 | 191 | 5.45e-58 | 181 |
MS.gene39163.t1 | AT5G42500 | 52.349 | 149 | 71 | 0 | 43 | 191 | 37 | 185 | 2.17e-56 | 176 |
MS.gene39163.t1 | AT1G22900 | 49.143 | 175 | 84 | 2 | 17 | 191 | 24 | 193 | 6.36e-56 | 175 |
MS.gene39163.t1 | AT5G42510 | 51.007 | 149 | 73 | 0 | 43 | 191 | 34 | 182 | 1.19e-54 | 172 |
MS.gene39163.t1 | AT3G13650 | 47.179 | 195 | 91 | 6 | 1 | 192 | 1 | 186 | 8.52e-52 | 165 |
MS.gene39163.t1 | AT3G13662 | 53.103 | 145 | 65 | 2 | 33 | 177 | 27 | 168 | 3.68e-51 | 162 |
MS.gene39163.t1 | AT2G21100 | 41.969 | 193 | 104 | 3 | 1 | 191 | 1 | 187 | 1.65e-49 | 159 |
MS.gene39163.t1 | AT2G21100 | 41.969 | 193 | 104 | 3 | 1 | 191 | 1 | 187 | 1.65e-49 | 159 |
MS.gene39163.t1 | AT5G49030 | 46.821 | 173 | 92 | 0 | 15 | 187 | 12 | 184 | 3.24e-48 | 168 |
MS.gene39163.t1 | AT3G13660 | 58.120 | 117 | 47 | 1 | 78 | 192 | 9 | 125 | 7.04e-43 | 140 |
MS.gene39163.t1 | AT4G38700 | 38.298 | 188 | 104 | 6 | 14 | 192 | 6 | 190 | 5.37e-40 | 135 |
MS.gene39163.t1 | AT2G21110 | 42.949 | 156 | 81 | 3 | 45 | 192 | 31 | 186 | 5.87e-38 | 129 |
MS.gene39163.t1 | AT3G58090 | 55.963 | 109 | 46 | 1 | 85 | 191 | 163 | 271 | 7.92e-37 | 129 |
MS.gene39163.t1 | AT3G24020 | 28.889 | 135 | 87 | 3 | 61 | 189 | 110 | 241 | 7.85e-13 | 65.1 |
MS.gene39163.t1 | AT4G13580 | 28.889 | 135 | 87 | 3 | 61 | 189 | 111 | 242 | 3.05e-12 | 63.5 |
MS.gene39163.t1 | AT4G11210 | 26.471 | 170 | 110 | 5 | 15 | 177 | 5 | 166 | 4.82e-12 | 62.0 |
MS.gene39163.t1 | AT4G11190 | 28.571 | 140 | 93 | 3 | 36 | 169 | 20 | 158 | 2.69e-11 | 60.1 |
Find 56 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGAAGTAATCTCAGTGTTT+TGG | 0.259860 | 1.2:-41926802 | MS.gene39163:CDS |
TGTGGAGTCCTAGGGTTGTT+GGG | 0.287660 | 1.2:+41927096 | None:intergenic |
AGGAAGTAGATGAGGGATAA+GGG | 0.337506 | 1.2:+41927173 | None:intergenic |
TCCTAGGGTTGTTGGGGAGA+TGG | 0.354171 | 1.2:+41927103 | None:intergenic |
GAGGAAGTAGATGAGGGATA+AGG | 0.362909 | 1.2:+41927172 | None:intergenic |
GACTCCGGACGCGCTGTTAA+CGG | 0.362933 | 1.2:+41926933 | None:intergenic |
ACTCCGGACGCGCTGTTAAC+GGG | 0.366524 | 1.2:+41926934 | None:intergenic |
TTGTGGAGTCCTAGGGTTGT+TGG | 0.373760 | 1.2:+41927095 | None:intergenic |
TTTGAGGTTTGTGGAGTCCT+AGG | 0.379817 | 1.2:+41927087 | None:intergenic |
ATGCCGGTTGTGGGTGGTAG+TGG | 0.389118 | 1.2:-41926747 | MS.gene39163:CDS |
TTCACACGAGGGAAGTATAA+TGG | 0.406207 | 1.2:-41926822 | MS.gene39163:CDS |
AGGCGACCCGGACAGCAGTT+TGG | 0.419537 | 1.2:+41927015 | None:intergenic |
GGATGTTGAGAAGAAAAGTT+TGG | 0.430943 | 1.2:+41927199 | None:intergenic |
CGACCCGTTAACAGCGCGTC+CGG | 0.452836 | 1.2:-41926937 | MS.gene39163:CDS |
CGTGAGAGAGATGCCGGTTG+TGG | 0.463566 | 1.2:-41926757 | MS.gene39163:CDS |
AACCCACTACCACCCACAAC+CGG | 0.476541 | 1.2:+41926744 | None:intergenic |
TTGAGGTTTGTGGAGTCCTA+GGG | 0.486598 | 1.2:+41927088 | None:intergenic |
GTGGAGTCCTAGGGTTGTTG+GGG | 0.490912 | 1.2:+41927097 | None:intergenic |
TGGGTTGTTCAGATTTGCAA+GGG | 0.492504 | 1.2:-41926727 | MS.gene39163:CDS |
AGTAGATGAGGGATAAGGGA+AGG | 0.507437 | 1.2:+41927177 | None:intergenic |
TTGTGCTCTTCCCACAACTT+CGG | 0.510733 | 1.2:+41926905 | None:intergenic |
CGTGGAAGTAGAAGCGGATG+TGG | 0.512512 | 1.2:+41927057 | None:intergenic |
TGCCGGTTGTGGGTGGTAGT+GGG | 0.514800 | 1.2:-41926746 | MS.gene39163:CDS |
GATGAAGAGGAAGTAGATGA+GGG | 0.521113 | 1.2:+41927166 | None:intergenic |
TCAGCTTCACAGAGTGAAGT+GGG | 0.523071 | 1.2:-41926870 | MS.gene39163:CDS |
TTCTACTTCCACGACATCAT+CGG | 0.523779 | 1.2:-41927047 | MS.gene39163:CDS |
GTGGGTTGTTCAGATTTGCA+AGG | 0.530567 | 1.2:-41926728 | MS.gene39163:CDS |
GTGAGAGAGATGCCGGTTGT+GGG | 0.540631 | 1.2:-41926756 | MS.gene39163:CDS |
ACCATCTCCCCAACAACCCT+AGG | 0.552762 | 1.2:-41927104 | MS.gene39163:CDS |
AAATGCATTAGAAGCTATTG+TGG | 0.554492 | 1.2:-41926676 | MS.gene39163:CDS |
GAGTGAAGTGGGGTTTCTCA+TGG | 0.555374 | 1.2:-41926859 | MS.gene39163:CDS |
TGATGAAGAGGAAGTAGATG+AGG | 0.561084 | 1.2:+41927165 | None:intergenic |
TGGTTGGAGATGAGGCGACC+CGG | 0.565807 | 1.2:+41927003 | None:intergenic |
GTAGATGAGGGATAAGGGAA+GGG | 0.571545 | 1.2:+41927178 | None:intergenic |
ATCCGCCGTGAGAGAGATGC+CGG | 0.574343 | 1.2:-41926763 | MS.gene39163:CDS |
CTTAACTTTGCATTCACACG+AGG | 0.574668 | 1.2:-41926834 | MS.gene39163:CDS |
GGAGTCAAACTCCGAAGTTG+TGG | 0.581001 | 1.2:-41926916 | MS.gene39163:CDS |
TGGTAATGGTGGTGATGAAG+AGG | 0.589837 | 1.2:+41927153 | None:intergenic |
ACAACTTCGGAGTTTGACTC+CGG | 0.593268 | 1.2:+41926918 | None:intergenic |
GAGTCAAACTCCGAAGTTGT+GGG | 0.593363 | 1.2:-41926915 | MS.gene39163:CDS |
GAAGTTGTGGGAAGAGCACA+AGG | 0.595582 | 1.2:-41926903 | MS.gene39163:CDS |
AACCACTGAACCAAAACCCG+TGG | 0.598362 | 1.2:+41926968 | None:intergenic |
ACCACTGAACCAAAACCCGT+GGG | 0.602599 | 1.2:+41926969 | None:intergenic |
TTCAGCTTCACAGAGTGAAG+TGG | 0.609451 | 1.2:-41926871 | MS.gene39163:CDS |
CACAACCGGCATCTCTCTCA+CGG | 0.612074 | 1.2:+41926758 | None:intergenic |
TACTTCCACGACATCATCGG+TGG | 0.615547 | 1.2:-41927044 | MS.gene39163:CDS |
CACTGAACCAAAACCCGTGG+GGG | 0.622706 | 1.2:+41926971 | None:intergenic |
TGATGTCGTGGAAGTAGAAG+CGG | 0.627685 | 1.2:+41927051 | None:intergenic |
CAGCTTCACAGAGTGAAGTG+GGG | 0.638369 | 1.2:-41926869 | MS.gene39163:CDS |
TGAGAAGAAAAGTTTGGCCA+TGG | 0.638924 | 1.2:+41927205 | None:intergenic |
AGAGAGATGCCGGTTGTGGG+TGG | 0.647672 | 1.2:-41926753 | MS.gene39163:CDS |
GGGTTGTTCAGATTTGCAAG+GGG | 0.683015 | 1.2:-41926726 | MS.gene39163:CDS |
GGTTGTTCAGATTTGCAAGG+GGG | 0.683578 | 1.2:-41926725 | MS.gene39163:CDS |
CCACTGAACCAAAACCCGTG+GGG | 0.704423 | 1.2:+41926970 | None:intergenic |
TTAACTTTGCATTCACACGA+GGG | 0.712435 | 1.2:-41926833 | MS.gene39163:CDS |
AACCGGCATCTCTCTCACGG+CGG | 0.738069 | 1.2:+41926761 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGATGGTTTTTATGAAAGAA+TGG | + | chr1.2:41926733-41926752 | None:intergenic | 25.0% |
!! | ATGGTTTTTATGAAAGAATG+GGG | + | chr1.2:41926731-41926750 | None:intergenic | 25.0% |
!! | GATGGTTTTTATGAAAGAAT+GGG | + | chr1.2:41926732-41926751 | None:intergenic | 25.0% |
AAATGCATTAGAAGCTATTG+TGG | - | chr1.2:41927174-41927193 | MS.gene39163:CDS | 30.0% | |
GGATGTTGAGAAGAAAAGTT+TGG | + | chr1.2:41926654-41926673 | None:intergenic | 35.0% | |
TTAACTTTGCATTCACACGA+GGG | - | chr1.2:41927017-41927036 | MS.gene39163:CDS | 35.0% | |
! | GGAAGTAATCTCAGTGTTTT+GGG | - | chr1.2:41927049-41927068 | MS.gene39163:CDS | 35.0% |
! | TGGAAGTAATCTCAGTGTTT+TGG | - | chr1.2:41927048-41927067 | MS.gene39163:CDS | 35.0% |
!!! | TTTTGGTTCAGTGGTTATGA+TGG | - | chr1.2:41926889-41926908 | MS.gene39163:CDS | 35.0% |
AAAAAACCAAACTGCTGTCC+GGG | - | chr1.2:41926829-41926848 | MS.gene39163:CDS | 40.0% | |
AGGAAGTAGATGAGGGATAA+GGG | + | chr1.2:41926680-41926699 | None:intergenic | 40.0% | |
CTTAACTTTGCATTCACACG+AGG | - | chr1.2:41927016-41927035 | MS.gene39163:CDS | 40.0% | |
GAAAAAACCAAACTGCTGTC+CGG | - | chr1.2:41926828-41926847 | MS.gene39163:CDS | 40.0% | |
GATGAAGAGGAAGTAGATGA+GGG | + | chr1.2:41926687-41926706 | None:intergenic | 40.0% | |
TGATGAAGAGGAAGTAGATG+AGG | + | chr1.2:41926688-41926707 | None:intergenic | 40.0% | |
TGGGTTGTTCAGATTTGCAA+GGG | - | chr1.2:41927123-41927142 | MS.gene39163:CDS | 40.0% | |
TTCTACTTCCACGACATCAT+CGG | - | chr1.2:41926803-41926822 | MS.gene39163:CDS | 40.0% | |
! | TTCACACGAGGGAAGTATAA+TGG | - | chr1.2:41927028-41927047 | MS.gene39163:CDS | 40.0% |
!! | TTTTTCAGTGGTTGGAGATG+AGG | + | chr1.2:41926858-41926877 | None:intergenic | 40.0% |
!!! | GGCTTAGTTTTTGAGGTTTG+TGG | + | chr1.2:41926775-41926794 | None:intergenic | 40.0% |
!!! | GTAATCTCAGTGTTTTGGGA+AGG | - | chr1.2:41927053-41927072 | MS.gene39163:CDS | 40.0% |
AACCACTGAAAAATCCCCCA+CGG | - | chr1.2:41926865-41926884 | MS.gene39163:CDS | 45.0% | |
ACAACTTCGGAGTTTGACTC+CGG | + | chr1.2:41926935-41926954 | None:intergenic | 45.0% | |
AGTAGATGAGGGATAAGGGA+AGG | + | chr1.2:41926676-41926695 | None:intergenic | 45.0% | |
GAGGAAGTAGATGAGGGATA+AGG | + | chr1.2:41926681-41926700 | None:intergenic | 45.0% | |
GAGTCAAACTCCGAAGTTGT+GGG | - | chr1.2:41926935-41926954 | MS.gene39163:CDS | 45.0% | |
GGGTTGTTCAGATTTGCAAG+GGG | - | chr1.2:41927124-41927143 | MS.gene39163:CDS | 45.0% | |
GGTTGTTCAGATTTGCAAGG+GGG | - | chr1.2:41927125-41927144 | MS.gene39163:CDS | 45.0% | |
GTAGATGAGGGATAAGGGAA+GGG | + | chr1.2:41926675-41926694 | None:intergenic | 45.0% | |
TCAGCTTCACAGAGTGAAGT+GGG | - | chr1.2:41926980-41926999 | MS.gene39163:CDS | 45.0% | |
TGATGTCGTGGAAGTAGAAG+CGG | + | chr1.2:41926802-41926821 | None:intergenic | 45.0% | |
TTCAGCTTCACAGAGTGAAG+TGG | - | chr1.2:41926979-41926998 | MS.gene39163:CDS | 45.0% | |
TTGAGGTTTGTGGAGTCCTA+GGG | + | chr1.2:41926765-41926784 | None:intergenic | 45.0% | |
TTGTGCTCTTCCCACAACTT+CGG | + | chr1.2:41926948-41926967 | None:intergenic | 45.0% | |
! | GAAAGAATGGGGTTTTGCTG+TGG | + | chr1.2:41926720-41926739 | None:intergenic | 45.0% |
! | GTGGGTTGTTCAGATTTGCA+AGG | - | chr1.2:41927122-41927141 | MS.gene39163:CDS | 45.0% |
! | TTTGAGGTTTGTGGAGTCCT+AGG | + | chr1.2:41926766-41926785 | None:intergenic | 45.0% |
! | TTTTTCCACCGATGATGTCG+TGG | + | chr1.2:41926814-41926833 | None:intergenic | 45.0% |
!! | ATGGGGTTTTGCTGTGGTAA+TGG | + | chr1.2:41926714-41926733 | None:intergenic | 45.0% |
!! | CGGATGTGGCTTAGTTTTTG+AGG | + | chr1.2:41926782-41926801 | None:intergenic | 45.0% |
!! | TGGTAATGGTGGTGATGAAG+AGG | + | chr1.2:41926700-41926719 | None:intergenic | 45.0% |
AACCACTGAACCAAAACCCG+TGG | + | chr1.2:41926885-41926904 | None:intergenic | 50.0% | |
ACCACTGAAAAATCCCCCAC+GGG | - | chr1.2:41926866-41926885 | MS.gene39163:CDS | 50.0% | |
ACCACTGAACCAAAACCCGT+GGG | + | chr1.2:41926884-41926903 | None:intergenic | 50.0% | |
CAGCTTCACAGAGTGAAGTG+GGG | - | chr1.2:41926981-41927000 | MS.gene39163:CDS | 50.0% | |
GAGTGAAGTGGGGTTTCTCA+TGG | - | chr1.2:41926991-41927010 | MS.gene39163:CDS | 50.0% | |
GGAGTCAAACTCCGAAGTTG+TGG | - | chr1.2:41926934-41926953 | MS.gene39163:CDS | 50.0% | |
TACTTCCACGACATCATCGG+TGG | - | chr1.2:41926806-41926825 | MS.gene39163:CDS | 50.0% | |
TGTGGAGTCCTAGGGTTGTT+GGG | + | chr1.2:41926757-41926776 | None:intergenic | 50.0% | |
TTGTGGAGTCCTAGGGTTGT+TGG | + | chr1.2:41926758-41926777 | None:intergenic | 50.0% | |
! | GAAAAATCCCCCACGGGTTT+TGG | - | chr1.2:41926872-41926891 | MS.gene39163:CDS | 50.0% |
! | GAAGTTGTGGGAAGAGCACA+AGG | - | chr1.2:41926947-41926966 | MS.gene39163:CDS | 50.0% |
!! | GTGGGGGATTTTTCAGTGGT+TGG | + | chr1.2:41926866-41926885 | None:intergenic | 50.0% |
!!! | GGGTTTTGCTGTGGTAATGG+TGG | + | chr1.2:41926711-41926730 | None:intergenic | 50.0% |
AACCCACTACCACCCACAAC+CGG | + | chr1.2:41927109-41927128 | None:intergenic | 55.0% | |
ACCATCTCCCCAACAACCCT+AGG | - | chr1.2:41926746-41926765 | MS.gene39163:CDS | 55.0% | |
CACAACCGGCATCTCTCTCA+CGG | + | chr1.2:41927095-41927114 | None:intergenic | 55.0% | |
CACTGAACCAAAACCCGTGG+GGG | + | chr1.2:41926882-41926901 | None:intergenic | 55.0% | |
CCACTGAACCAAAACCCGTG+GGG | + | chr1.2:41926883-41926902 | None:intergenic | 55.0% | |
CGTGGAAGTAGAAGCGGATG+TGG | + | chr1.2:41926796-41926815 | None:intergenic | 55.0% | |
GTGGAGTCCTAGGGTTGTTG+GGG | + | chr1.2:41926756-41926775 | None:intergenic | 55.0% | |
TCCTAGGGTTGTTGGGGAGA+TGG | + | chr1.2:41926750-41926769 | None:intergenic | 55.0% | |
! | GTGAGAGAGATGCCGGTTGT+GGG | - | chr1.2:41927094-41927113 | MS.gene39163:CDS | 55.0% |
!! | ACCCGTGGGGGATTTTTCAG+TGG | + | chr1.2:41926870-41926889 | None:intergenic | 55.0% |
AACCGGCATCTCTCTCACGG+CGG | + | chr1.2:41927092-41927111 | None:intergenic | 60.0% | |
ACTCCGGACGCGCTGTTAAC+GGG | + | chr1.2:41926919-41926938 | None:intergenic | 60.0% | |
ATCCGCCGTGAGAGAGATGC+CGG | - | chr1.2:41927087-41927106 | MS.gene39163:CDS | 60.0% | |
GACTCCGGACGCGCTGTTAA+CGG | + | chr1.2:41926920-41926939 | None:intergenic | 60.0% | |
TGGTTGGAGATGAGGCGACC+CGG | + | chr1.2:41926850-41926869 | None:intergenic | 60.0% | |
! | AGAGAGATGCCGGTTGTGGG+TGG | - | chr1.2:41927097-41927116 | MS.gene39163:CDS | 60.0% |
! | ATGCCGGTTGTGGGTGGTAG+TGG | - | chr1.2:41927103-41927122 | MS.gene39163:CDS | 60.0% |
! | CGTGAGAGAGATGCCGGTTG+TGG | - | chr1.2:41927093-41927112 | MS.gene39163:CDS | 60.0% |
! | TGCCGGTTGTGGGTGGTAGT+GGG | - | chr1.2:41927104-41927123 | MS.gene39163:CDS | 60.0% |
!!! | CCCCACGGGTTTTGGTTCAG+TGG | - | chr1.2:41926880-41926899 | MS.gene39163:CDS | 60.0% |
AGGCGACCCGGACAGCAGTT+TGG | + | chr1.2:41926838-41926857 | None:intergenic | 65.0% | |
CGACCCGTTAACAGCGCGTC+CGG | - | chr1.2:41926913-41926932 | MS.gene39163:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 41926647 | 41927225 | 41926647 | ID=MS.gene39163 |
chr1.2 | mRNA | 41926647 | 41927225 | 41926647 | ID=MS.gene39163.t1;Parent=MS.gene39163 |
chr1.2 | exon | 41926647 | 41927225 | 41926647 | ID=MS.gene39163.t1.exon1;Parent=MS.gene39163.t1 |
chr1.2 | CDS | 41926647 | 41927225 | 41926647 | ID=cds.MS.gene39163.t1;Parent=MS.gene39163.t1 |
Gene Sequence |
Protein sequence |