Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33424.t1 | KEH28826.1 | 87.9 | 199 | 24 | 0 | 17 | 215 | 1 | 199 | 1.50E-98 | 369 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33424.t1 | Q9C891 | 58.4 | 190 | 72 | 3 | 26 | 215 | 5 | 187 | 1.3e-58 | 227.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33424.t1 | A0A072UHF1 | 87.9 | 199 | 24 | 0 | 17 | 215 | 1 | 199 | 1.1e-98 | 369.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33424 | MS.gene057717 | PPI |
MS.gene33424 | MS.gene06035 | PPI |
MS.gene33424 | MS.gene068294 | PPI |
MS.gene33424 | MS.gene98692 | PPI |
MS.gene33424 | MS.gene33676 | PPI |
MS.gene33424 | MS.gene33677 | PPI |
MS.gene33424 | MS.gene068291 | PPI |
MS.gene33424 | MS.gene24973 | PPI |
MS.gene33424 | MS.gene33680 | PPI |
MS.gene33424 | MS.gene24971 | PPI |
MS.gene33424 | MS.gene071329 | PPI |
MS.gene33424 | MS.gene33420 | PPI |
MS.gene33424 | MS.gene048891 | PPI |
MS.gene33424 | MS.gene55764 | PPI |
MS.gene33424 | MS.gene003512 | PPI |
MS.gene33424 | MS.gene33418 | PPI |
MS.gene33424 | MS.gene52084 | PPI |
MS.gene33424 | MS.gene068292 | PPI |
MS.gene33424 | MS.gene24969 | PPI |
MS.gene33424 | MS.gene024359 | PPI |
MS.gene33424 | MS.gene33426 | PPI |
MS.gene33424 | MS.gene06033 | PPI |
MS.gene33424 | MS.gene33679 | PPI |
MS.gene33424 | MS.gene90969 | PPI |
MS.gene33424 | MS.gene33681 | PPI |
MS.gene33424 | MS.gene55766 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33424.t1 | MTR_4g013330 | 88.442 | 199 | 23 | 0 | 17 | 215 | 1 | 199 | 2.07e-130 | 365 |
MS.gene33424.t1 | MTR_4g013350 | 81.910 | 199 | 34 | 1 | 17 | 215 | 1 | 197 | 2.20e-119 | 337 |
MS.gene33424.t1 | MTR_4g013345 | 79.899 | 199 | 37 | 2 | 17 | 215 | 1 | 196 | 4.81e-112 | 318 |
MS.gene33424.t1 | MTR_4g013320 | 76.882 | 186 | 39 | 2 | 32 | 215 | 16 | 199 | 2.56e-105 | 301 |
MS.gene33424.t1 | MTR_4g013335 | 75.500 | 200 | 44 | 2 | 17 | 215 | 1 | 196 | 1.64e-104 | 300 |
MS.gene33424.t1 | MTR_4g013310 | 65.672 | 201 | 63 | 3 | 17 | 215 | 1 | 197 | 7.91e-89 | 260 |
MS.gene33424.t1 | MTR_4g013325 | 70.297 | 202 | 54 | 3 | 17 | 215 | 1 | 199 | 1.04e-88 | 259 |
MS.gene33424.t1 | MTR_7g070390 | 64.583 | 192 | 62 | 3 | 25 | 215 | 6 | 192 | 1.01e-78 | 234 |
MS.gene33424.t1 | MTR_4g013385 | 56.842 | 190 | 74 | 3 | 26 | 215 | 9 | 190 | 3.24e-73 | 220 |
MS.gene33424.t1 | MTR_0433s0040 | 56.842 | 190 | 74 | 3 | 26 | 215 | 9 | 190 | 3.24e-73 | 220 |
MS.gene33424.t1 | MTR_4g013770 | 58.480 | 171 | 68 | 2 | 45 | 215 | 24 | 191 | 1.13e-66 | 204 |
MS.gene33424.t1 | MTR_1g054525 | 53.535 | 198 | 79 | 4 | 19 | 215 | 7 | 192 | 5.33e-65 | 199 |
MS.gene33424.t1 | MTR_4g013355 | 50.000 | 188 | 77 | 4 | 28 | 215 | 9 | 179 | 2.92e-58 | 182 |
MS.gene33424.t1 | MTR_4g073950 | 54.248 | 153 | 69 | 1 | 63 | 215 | 41 | 192 | 7.42e-58 | 181 |
MS.gene33424.t1 | MTR_7g093870 | 53.205 | 156 | 70 | 1 | 63 | 215 | 38 | 193 | 1.63e-54 | 174 |
MS.gene33424.t1 | MTR_7g093850 | 49.468 | 188 | 90 | 4 | 29 | 215 | 11 | 194 | 3.72e-54 | 172 |
MS.gene33424.t1 | MTR_7g093820 | 49.474 | 190 | 87 | 5 | 29 | 215 | 11 | 194 | 1.01e-53 | 171 |
MS.gene33424.t1 | MTR_7g093790 | 42.647 | 204 | 100 | 4 | 13 | 215 | 4 | 191 | 3.67e-53 | 169 |
MS.gene33424.t1 | MTR_7g093830 | 45.361 | 194 | 94 | 4 | 23 | 215 | 11 | 193 | 7.42e-53 | 168 |
MS.gene33424.t1 | MTR_1g056370 | 49.673 | 153 | 73 | 2 | 63 | 214 | 36 | 185 | 8.08e-49 | 158 |
MS.gene33424.t1 | MTR_4g078885 | 46.358 | 151 | 77 | 1 | 65 | 215 | 39 | 185 | 4.52e-45 | 148 |
MS.gene33424.t1 | MTR_3g034030 | 46.358 | 151 | 77 | 1 | 65 | 215 | 39 | 185 | 1.24e-44 | 147 |
MS.gene33424.t1 | MTR_3g105640 | 43.827 | 162 | 89 | 2 | 55 | 215 | 28 | 188 | 4.42e-44 | 146 |
MS.gene33424.t1 | MTR_3g105630 | 43.396 | 159 | 89 | 1 | 58 | 215 | 31 | 189 | 7.37e-43 | 143 |
MS.gene33424.t1 | MTR_5g096120 | 41.026 | 156 | 82 | 3 | 66 | 215 | 38 | 189 | 6.02e-38 | 130 |
MS.gene33424.t1 | MTR_4g122110 | 35.811 | 148 | 85 | 2 | 72 | 215 | 39 | 180 | 1.34e-23 | 93.2 |
MS.gene33424.t1 | MTR_4g122130 | 34.932 | 146 | 89 | 2 | 72 | 215 | 39 | 180 | 5.34e-23 | 91.7 |
MS.gene33424.t1 | MTR_8g099115 | 35.294 | 136 | 81 | 4 | 65 | 194 | 34 | 168 | 4.03e-15 | 70.9 |
MS.gene33424.t1 | MTR_4g049550 | 31.298 | 131 | 84 | 2 | 62 | 190 | 27 | 153 | 4.45e-15 | 70.9 |
MS.gene33424.t1 | MTR_4g049570 | 28.767 | 146 | 102 | 1 | 65 | 210 | 30 | 173 | 8.26e-14 | 67.4 |
MS.gene33424.t1 | MTR_8g099135 | 32.044 | 181 | 90 | 7 | 24 | 194 | 7 | 164 | 7.97e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33424.t1 | AT1G55210 | 58.421 | 190 | 72 | 3 | 26 | 215 | 5 | 187 | 4.19e-78 | 233 |
MS.gene33424.t1 | AT1G55210 | 58.421 | 190 | 72 | 3 | 26 | 215 | 5 | 187 | 4.19e-78 | 233 |
MS.gene33424.t1 | AT1G58170 | 57.292 | 192 | 69 | 3 | 26 | 215 | 5 | 185 | 2.49e-74 | 223 |
MS.gene33424.t1 | AT5G49040 | 53.684 | 190 | 86 | 1 | 26 | 215 | 4 | 191 | 3.85e-70 | 212 |
MS.gene33424.t1 | AT3G13650 | 53.889 | 180 | 75 | 4 | 36 | 215 | 15 | 186 | 5.79e-65 | 199 |
MS.gene33424.t1 | AT3G13662 | 56.291 | 151 | 61 | 1 | 52 | 202 | 27 | 172 | 7.24e-56 | 176 |
MS.gene33424.t1 | AT5G49030 | 51.323 | 189 | 82 | 3 | 22 | 210 | 6 | 184 | 3.00e-55 | 189 |
MS.gene33424.t1 | AT1G65870 | 48.366 | 153 | 77 | 1 | 62 | 214 | 39 | 189 | 3.71e-52 | 167 |
MS.gene33424.t1 | AT3G13660 | 57.812 | 128 | 51 | 1 | 88 | 215 | 1 | 125 | 4.59e-49 | 156 |
MS.gene33424.t1 | AT2G21100 | 48.344 | 151 | 76 | 1 | 64 | 214 | 39 | 187 | 9.73e-49 | 158 |
MS.gene33424.t1 | AT2G21100 | 48.344 | 151 | 76 | 1 | 64 | 214 | 39 | 187 | 9.73e-49 | 158 |
MS.gene33424.t1 | AT1G22900 | 49.673 | 153 | 73 | 2 | 62 | 214 | 45 | 193 | 9.80e-49 | 158 |
MS.gene33424.t1 | AT5G42500 | 48.026 | 152 | 75 | 3 | 63 | 214 | 38 | 185 | 3.59e-46 | 151 |
MS.gene33424.t1 | AT5G42510 | 46.405 | 153 | 76 | 3 | 63 | 214 | 35 | 182 | 1.00e-44 | 147 |
MS.gene33424.t1 | AT4G38700 | 37.949 | 195 | 109 | 5 | 25 | 215 | 4 | 190 | 2.33e-39 | 134 |
MS.gene33424.t1 | AT2G21110 | 39.306 | 173 | 91 | 3 | 48 | 215 | 23 | 186 | 2.57e-37 | 129 |
MS.gene33424.t1 | AT3G58090 | 50.000 | 110 | 55 | 0 | 105 | 214 | 162 | 271 | 1.35e-35 | 127 |
MS.gene33424.t1 | AT4G23690 | 35.507 | 138 | 80 | 4 | 61 | 194 | 34 | 166 | 1.59e-16 | 74.7 |
MS.gene33424.t1 | AT4G11210 | 28.649 | 185 | 110 | 6 | 17 | 198 | 1 | 166 | 2.20e-14 | 68.9 |
MS.gene33424.t1 | AT4G11190 | 28.495 | 186 | 109 | 6 | 17 | 198 | 1 | 166 | 1.17e-13 | 67.0 |
MS.gene33424.t1 | AT4G11180 | 27.604 | 192 | 119 | 5 | 26 | 214 | 9 | 183 | 1.60e-12 | 63.9 |
Find 48 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAATAGACCGCAAGTTATT+AGG | 0.263716 | 4.2:+87145025 | MS.gene33424:CDS |
ATGGACAGCCCTTTGACTTT+AGG | 0.267915 | 4.2:+87145193 | MS.gene33424:CDS |
TTTATTGAAGGAAAGTATAA+TGG | 0.272706 | 4.2:+87145313 | MS.gene33424:CDS |
CCTAATAACTTGCGGTCTAT+TGG | 0.300244 | 4.2:-87145025 | None:intergenic |
TCAACCGGCCTTAATGCTTT+TGG | 0.320368 | 4.2:+87145157 | MS.gene33424:CDS |
CAATTGAGTTCCAAGCTTGT+AGG | 0.324819 | 4.2:+87145220 | MS.gene33424:CDS |
CATTGGGTTGATCTCAAATC+TGG | 0.338134 | 4.2:+87145451 | MS.gene33424:CDS |
GAAATGTTTGGAAGGCATTA+TGG | 0.353762 | 4.2:-87144912 | None:intergenic |
TGGGAGTACTCTTACTATCT+TGG | 0.368563 | 4.2:+87145333 | MS.gene33424:CDS |
TCTGCATCACAGGAAGAAAT+AGG | 0.369275 | 4.2:+87145265 | MS.gene33424:CDS |
CAAAGTGATGAGGAAATGTT+TGG | 0.371335 | 4.2:-87144924 | None:intergenic |
ATGCCTGTTGTTGGTGGTAG+TGG | 0.375988 | 4.2:+87145388 | MS.gene33424:CDS |
GGGAGTACTCTTACTATCTT+GGG | 0.379918 | 4.2:+87145334 | MS.gene33424:CDS |
GGACTAAACCAAAAGCATTA+AGG | 0.382332 | 4.2:-87145165 | None:intergenic |
TGAACAATTGTAATTGTTGT+AGG | 0.389348 | 4.2:-87145115 | None:intergenic |
TTATTGAAGGAAAGTATAAT+GGG | 0.420383 | 4.2:+87145314 | MS.gene33424:CDS |
ATGCTCAAGCTAGTACTCAT+TGG | 0.446414 | 4.2:+87145434 | MS.gene33424:CDS |
ATCCTGCTATTGATAAGGTT+AGG | 0.457162 | 4.2:+87145362 | MS.gene33424:CDS |
TGCTCAAGCTAGTACTCATT+GGG | 0.464742 | 4.2:+87145435 | MS.gene33424:CDS |
CCGGTTGAGTGTAGTTTCAA+TGG | 0.466931 | 4.2:-87145142 | None:intergenic |
CCATTGAAACTACACTCAAC+CGG | 0.471757 | 4.2:+87145142 | MS.gene33424:CDS |
TTTCTATGCATCTGCATCAC+AGG | 0.485104 | 4.2:+87145255 | MS.gene33424:CDS |
GAACAATTGTAATTGTTGTA+GGG | 0.491999 | 4.2:-87145114 | None:intergenic |
TCCCTAACCTTATCAATAGC+AGG | 0.497267 | 4.2:-87145364 | None:intergenic |
TCCTGCTATTGATAAGGTTA+GGG | 0.497387 | 4.2:+87145363 | MS.gene33424:CDS |
GTGTGTTGCAAGATATGAGA+AGG | 0.498448 | 4.2:-87144952 | None:intergenic |
ATTGGGTTGATCTCAAATCT+GGG | 0.503082 | 4.2:+87145452 | MS.gene33424:CDS |
CGTGCCAGTAGAATCTGAAA+TGG | 0.504595 | 4.2:-87145072 | None:intergenic |
GTTAGGGAGATGCCTGTTGT+TGG | 0.505285 | 4.2:+87145379 | MS.gene33424:CDS |
GAGGAATCCTGCTATTGATA+AGG | 0.510518 | 4.2:+87145357 | MS.gene33424:CDS |
AGTCCACTACCACCAACAAC+AGG | 0.512977 | 4.2:-87145391 | None:intergenic |
AATTGCAGTCCTAAAGTCAA+AGG | 0.516117 | 4.2:-87145202 | None:intergenic |
AGGGAGATGCCTGTTGTTGG+TGG | 0.521357 | 4.2:+87145382 | MS.gene33424:CDS |
TAAGCCATTTCAGATTCTAC+TGG | 0.525620 | 4.2:+87145068 | MS.gene33424:CDS |
GTTATTAGGCCTAAACAAGA+AGG | 0.549483 | 4.2:+87145039 | MS.gene33424:CDS |
TGTTTAGGCCTAATAACTTG+CGG | 0.555867 | 4.2:-87145033 | None:intergenic |
ATTGCAGTCCTAAAGTCAAA+GGG | 0.561693 | 4.2:-87145201 | None:intergenic |
GTGATGAGGAAATGTTTGGA+AGG | 0.586936 | 4.2:-87144920 | None:intergenic |
TACTGGCACGACATACTAAG+TGG | 0.588416 | 4.2:+87145085 | MS.gene33424:CDS |
GAAGGAAGAACAAAGTGATG+AGG | 0.589675 | 4.2:-87144934 | None:intergenic |
AAGCTTGTAGGAAAAGCTCA+AGG | 0.610963 | 4.2:+87145232 | MS.gene33424:CDS |
TAAACCAAAAGCATTAAGGC+CGG | 0.621311 | 4.2:-87145161 | None:intergenic |
GTTGAGTGTAGTTTCAATGG+TGG | 0.624193 | 4.2:-87145139 | None:intergenic |
ATGTTTGGAAGGCATTATGG+TGG | 0.626853 | 4.2:-87144909 | None:intergenic |
TTGGGTTGATCTCAAATCTG+GGG | 0.653245 | 4.2:+87145453 | MS.gene33424:CDS |
TCAAAGGGCTGTCCATCATG+CGG | 0.670156 | 4.2:-87145186 | None:intergenic |
GGAGTACTCTTACTATCTTG+GGG | 0.671558 | 4.2:+87145335 | MS.gene33424:CDS |
GTACTCTTACTATCTTGGGG+AGG | 0.673978 | 4.2:+87145338 | MS.gene33424:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTTAAACATTTTGTTT+TGG | + | chr4.2:87144509-87144528 | MS.gene33424:intron | 10.0% |
!! | ATAAAATAAAACTATATGAC+AGG | - | chr4.2:87144491-87144510 | None:intergenic | 15.0% |
!!! | ATATTTTAAGCTTTTATATG+TGG | + | chr4.2:87144549-87144568 | MS.gene33424:intron | 15.0% |
!!! | TTTTTTTAACAAGCAAAAAT+CGG | - | chr4.2:87144717-87144736 | None:intergenic | 15.0% |
!!! | ATGAATTTTGCTTTTATTGA+AGG | + | chr4.2:87145301-87145320 | MS.gene33424:CDS | 20.0% |
!!! | CTAATCTTTTTGTTTTTCTT+TGG | + | chr4.2:87144604-87144623 | MS.gene33424:intron | 20.0% |
!!! | TTATTGAAGGAAAGTATAAT+GGG | + | chr4.2:87145314-87145333 | MS.gene33424:CDS | 20.0% |
!!! | TTTATTGAAGGAAAGTATAA+TGG | + | chr4.2:87145313-87145332 | MS.gene33424:CDS | 20.0% |
! | AGGAACAAAAATATAAGAAG+AGG | - | chr4.2:87144809-87144828 | None:intergenic | 25.0% |
! | ATAAGAAGTTAAAGAAAGTG+AGG | - | chr4.2:87144829-87144848 | None:intergenic | 25.0% |
! | GAACAATTGTAATTGTTGTA+GGG | - | chr4.2:87145117-87145136 | None:intergenic | 25.0% |
! | TGAACAATTGTAATTGTTGT+AGG | - | chr4.2:87145118-87145137 | None:intergenic | 25.0% |
!! | TTTTAAGCTTTTATATGTGG+TGG | + | chr4.2:87144552-87144571 | MS.gene33424:intron | 25.0% |
!!! | TTAGTTTTTCCTTCTTGTTT+AGG | - | chr4.2:87145051-87145070 | None:intergenic | 25.0% |
ATATAAGAAGAGGAAAGTGA+AGG | - | chr4.2:87144799-87144818 | None:intergenic | 30.0% | |
! | AGTGAAGGAAAAAGTACAAA+TGG | - | chr4.2:87144784-87144803 | None:intergenic | 30.0% |
AATTGCAGTCCTAAAGTCAA+AGG | - | chr4.2:87145205-87145224 | None:intergenic | 35.0% | |
ATCCTGCTATTGATAAGGTT+AGG | + | chr4.2:87145362-87145381 | MS.gene33424:CDS | 35.0% | |
ATTGCAGTCCTAAAGTCAAA+GGG | - | chr4.2:87145204-87145223 | None:intergenic | 35.0% | |
CAAAGTGATGAGGAAATGTT+TGG | - | chr4.2:87144927-87144946 | None:intergenic | 35.0% | |
GTTATTAGGCCTAAACAAGA+AGG | + | chr4.2:87145039-87145058 | MS.gene33424:CDS | 35.0% | |
TAAGCCATTTCAGATTCTAC+TGG | + | chr4.2:87145068-87145087 | MS.gene33424:CDS | 35.0% | |
TCCTGCTATTGATAAGGTTA+GGG | + | chr4.2:87145363-87145382 | MS.gene33424:CDS | 35.0% | |
TGTTTAGGCCTAATAACTTG+CGG | - | chr4.2:87145036-87145055 | None:intergenic | 35.0% | |
! | AGGAAAAAGTACAAATGGAG+TGG | - | chr4.2:87144779-87144798 | None:intergenic | 35.0% |
! | GGAAAAAGTACAAATGGAGT+GGG | - | chr4.2:87144778-87144797 | None:intergenic | 35.0% |
!! | ATTGGGTTGATCTCAAATCT+GGG | + | chr4.2:87145452-87145471 | MS.gene33424:CDS | 35.0% |
!! | GAAATGTTTGGAAGGCATTA+TGG | - | chr4.2:87144915-87144934 | None:intergenic | 35.0% |
!! | GGACTAAACCAAAAGCATTA+AGG | - | chr4.2:87145168-87145187 | None:intergenic | 35.0% |
!! | TAAACCAAAAGCATTAAGGC+CGG | - | chr4.2:87145164-87145183 | None:intergenic | 35.0% |
!!! | GACTTTTCAGATTTGCTAGA+GGG | + | chr4.2:87145410-87145429 | MS.gene33424:CDS | 35.0% |
AAGCTTGTAGGAAAAGCTCA+AGG | + | chr4.2:87145232-87145251 | MS.gene33424:CDS | 40.0% | |
ACAAATGGAGTGGGATGTAT+AGG | - | chr4.2:87144769-87144788 | None:intergenic | 40.0% | |
ATGCTCAAGCTAGTACTCAT+TGG | + | chr4.2:87145434-87145453 | MS.gene33424:CDS | 40.0% | |
CAAATGGAGTGGGATGTATA+GGG | - | chr4.2:87144768-87144787 | None:intergenic | 40.0% | |
CAATGCTCAGACAAACAAAG+AGG | - | chr4.2:87144583-87144602 | None:intergenic | 40.0% | |
CAATTGAGTTCCAAGCTTGT+AGG | + | chr4.2:87145220-87145239 | MS.gene33424:CDS | 40.0% | |
CCAATAGACCGCAAGTTATT+AGG | + | chr4.2:87145025-87145044 | MS.gene33424:CDS | 40.0% | |
CCATTGAAACTACACTCAAC+CGG | + | chr4.2:87145142-87145161 | MS.gene33424:CDS | 40.0% | |
CTGTGGAGACAATAAAGTAG+TGG | - | chr4.2:87144864-87144883 | None:intergenic | 40.0% | |
GAAGGAAGAACAAAGTGATG+AGG | - | chr4.2:87144937-87144956 | None:intergenic | 40.0% | |
GAGGAATCCTGCTATTGATA+AGG | + | chr4.2:87145357-87145376 | MS.gene33424:CDS | 40.0% | |
GATTGTTGTGATGCTAACTG+TGG | - | chr4.2:87144881-87144900 | None:intergenic | 40.0% | |
GTGATGAGGAAATGTTTGGA+AGG | - | chr4.2:87144923-87144942 | None:intergenic | 40.0% | |
GTGTGTTGCAAGATATGAGA+AGG | - | chr4.2:87144955-87144974 | None:intergenic | 40.0% | |
GTTGAGTGTAGTTTCAATGG+TGG | - | chr4.2:87145142-87145161 | None:intergenic | 40.0% | |
TCCCTAACCTTATCAATAGC+AGG | - | chr4.2:87145367-87145386 | None:intergenic | 40.0% | |
TCTGCATCACAGGAAGAAAT+AGG | + | chr4.2:87145265-87145284 | MS.gene33424:CDS | 40.0% | |
TGCTCAAGCTAGTACTCATT+GGG | + | chr4.2:87145435-87145454 | MS.gene33424:CDS | 40.0% | |
TGGAGACAATAAAGTAGTGG+AGG | - | chr4.2:87144861-87144880 | None:intergenic | 40.0% | |
TTTCTATGCATCTGCATCAC+AGG | + | chr4.2:87145255-87145274 | MS.gene33424:CDS | 40.0% | |
! | CCTAATAACTTGCGGTCTAT+TGG | - | chr4.2:87145028-87145047 | None:intergenic | 40.0% |
! | GGAGTACTCTTACTATCTTG+GGG | + | chr4.2:87145335-87145354 | MS.gene33424:CDS | 40.0% |
! | TTGAGCTTTTCCTACAAGCT+TGG | - | chr4.2:87145233-87145252 | None:intergenic | 40.0% |
!! | ATGTTTGGAAGGCATTATGG+TGG | - | chr4.2:87144912-87144931 | None:intergenic | 40.0% |
!! | CATTGGGTTGATCTCAAATC+TGG | + | chr4.2:87145451-87145470 | MS.gene33424:CDS | 40.0% |
!! | GAAGAGCACTTAAAAGCACA+AGG | - | chr4.2:87144675-87144694 | None:intergenic | 40.0% |
!! | GGGAGTACTCTTACTATCTT+GGG | + | chr4.2:87145334-87145353 | MS.gene33424:CDS | 40.0% |
!! | TGCTTTTAAGTGCTCTTCGT+TGG | + | chr4.2:87144677-87144696 | MS.gene33424:intron | 40.0% |
!! | TGGGAGTACTCTTACTATCT+TGG | + | chr4.2:87145333-87145352 | MS.gene33424:CDS | 40.0% |
!! | TTGGGTTGATCTCAAATCTG+GGG | + | chr4.2:87145453-87145472 | MS.gene33424:CDS | 40.0% |
!!! | GGACTTTTCAGATTTGCTAG+AGG | + | chr4.2:87145409-87145428 | MS.gene33424:CDS | 40.0% |
!!! | TTTTGGTTTAGTCCGCATGA+TGG | + | chr4.2:87145174-87145193 | MS.gene33424:CDS | 40.0% |
CCGGTTGAGTGTAGTTTCAA+TGG | - | chr4.2:87145145-87145164 | None:intergenic | 45.0% | |
CGTGCCAGTAGAATCTGAAA+TGG | - | chr4.2:87145075-87145094 | None:intergenic | 45.0% | |
GTACTCTTACTATCTTGGGG+AGG | + | chr4.2:87145338-87145357 | MS.gene33424:CDS | 45.0% | |
TACTGGCACGACATACTAAG+TGG | + | chr4.2:87145085-87145104 | MS.gene33424:CDS | 45.0% | |
! | ATGGACAGCCCTTTGACTTT+AGG | + | chr4.2:87145193-87145212 | MS.gene33424:CDS | 45.0% |
! | TCAACCGGCCTTAATGCTTT+TGG | + | chr4.2:87145157-87145176 | MS.gene33424:CDS | 45.0% |
AGTCCACTACCACCAACAAC+AGG | - | chr4.2:87145394-87145413 | None:intergenic | 50.0% | |
GTTAGGGAGATGCCTGTTGT+TGG | + | chr4.2:87145379-87145398 | MS.gene33424:CDS | 50.0% | |
TCAAAGGGCTGTCCATCATG+CGG | - | chr4.2:87145189-87145208 | None:intergenic | 50.0% | |
!! | ATGCCTGTTGTTGGTGGTAG+TGG | + | chr4.2:87145388-87145407 | MS.gene33424:CDS | 50.0% |
AGGGAGATGCCTGTTGTTGG+TGG | + | chr4.2:87145382-87145401 | MS.gene33424:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 87144467 | 87145516 | 87144467 | ID=MS.gene33424 |
chr4.2 | mRNA | 87144467 | 87145516 | 87144467 | ID=MS.gene33424.t1;Parent=MS.gene33424 |
chr4.2 | exon | 87144467 | 87144481 | 87144467 | ID=MS.gene33424.t1.exon1;Parent=MS.gene33424.t1 |
chr4.2 | CDS | 87144467 | 87144481 | 87144467 | ID=cds.MS.gene33424.t1;Parent=MS.gene33424.t1 |
chr4.2 | exon | 87144884 | 87145516 | 87144884 | ID=MS.gene33424.t1.exon2;Parent=MS.gene33424.t1 |
chr4.2 | CDS | 87144884 | 87145516 | 87144884 | ID=cds.MS.gene33424.t1;Parent=MS.gene33424.t1 |
Gene Sequence |
Protein sequence |