Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024967.t1 | XP_003610625.1 | 96.2 | 479 | 18 | 0 | 16 | 494 | 9 | 487 | 4.40E-263 | 916.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024967.t1 | Q9LH39 | 73.6 | 459 | 118 | 3 | 16 | 473 | 21 | 477 | 1.7e-194 | 680.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024967.t1 | G7K0X5 | 96.2 | 479 | 18 | 0 | 16 | 494 | 9 | 487 | 3.2e-263 | 916.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84987 | MS.gene024967 | PPI |
| MS.gene024967 | MS.gene070082 | PPI |
| MS.gene024967 | MS.gene039946 | PPI |
| MS.gene22262 | MS.gene024967 | PPI |
| MS.gene72828 | MS.gene024967 | PPI |
| MS.gene024967 | MS.gene019112 | PPI |
| MS.gene028082 | MS.gene024967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024967.t1 | MTR_5g005160 | 94.332 | 494 | 21 | 1 | 1 | 494 | 1 | 487 | 0.0 | 892 |
| MS.gene024967.t1 | MTR_5g026780 | 58.182 | 440 | 181 | 3 | 16 | 453 | 45 | 483 | 0.0 | 520 |
| MS.gene024967.t1 | MTR_5g026780 | 58.182 | 440 | 181 | 3 | 16 | 453 | 29 | 467 | 0.0 | 519 |
| MS.gene024967.t1 | MTR_1g112950 | 58.372 | 430 | 178 | 1 | 16 | 445 | 25 | 453 | 5.93e-180 | 513 |
| MS.gene024967.t1 | MTR_0031s0060 | 53.653 | 438 | 178 | 2 | 6 | 443 | 129 | 541 | 6.83e-165 | 482 |
| MS.gene024967.t1 | MTR_8g085630 | 48.764 | 445 | 224 | 3 | 3 | 444 | 26 | 469 | 7.37e-142 | 416 |
| MS.gene024967.t1 | MTR_5g064750 | 47.045 | 440 | 229 | 3 | 16 | 452 | 24 | 462 | 1.61e-133 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024967.t1 | AT3G19553 | 72.399 | 471 | 127 | 3 | 4 | 473 | 9 | 477 | 0.0 | 670 |
| MS.gene024967.t1 | AT1G31830 | 55.982 | 443 | 190 | 2 | 5 | 443 | 33 | 474 | 0.0 | 523 |
| MS.gene024967.t1 | AT1G31830 | 55.982 | 443 | 190 | 2 | 5 | 443 | 17 | 458 | 0.0 | 521 |
| MS.gene024967.t1 | AT5G05630 | 56.582 | 433 | 185 | 2 | 16 | 446 | 52 | 483 | 0.0 | 519 |
| MS.gene024967.t1 | AT1G31820 | 53.261 | 460 | 199 | 3 | 16 | 473 | 35 | 480 | 2.07e-167 | 481 |
| MS.gene024967.t1 | AT3G13620 | 46.771 | 449 | 231 | 5 | 12 | 455 | 25 | 470 | 2.49e-131 | 389 |
Find 112 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCGCCTTAGTCTGATTT+TGG | 0.077741 | 5.3:+473879 | None:intergenic |
| CTTTGGATATCCTCTGCTTT+TGG | 0.256985 | 5.3:-474168 | MS.gene024967:CDS |
| GCCCGTATTCCTGCTCTCTT+AGG | 0.274297 | 5.3:-474021 | MS.gene024967:CDS |
| AGAGGTAATAAGGTTAGTTT+TGG | 0.281281 | 5.3:+474375 | None:intergenic |
| ACAACGGTGGCTATGTTCTT+TGG | 0.294038 | 5.3:-474185 | MS.gene024967:CDS |
| GTTACTTCAATAACATGTTT+TGG | 0.298728 | 5.3:-473822 | MS.gene024967:CDS |
| ATTTATCTTGTACCCTATCT+TGG | 0.304077 | 5.3:-472808 | MS.gene024967:CDS |
| TAGAGCAATCAGAGGTAATA+AGG | 0.309669 | 5.3:+474365 | None:intergenic |
| CTGAAAGGTCTATAAAGATT+TGG | 0.310531 | 5.3:+472954 | None:intergenic |
| GAAGTCTCCGGCGGTCCATT+TGG | 0.336911 | 5.3:-474333 | MS.gene024967:CDS |
| TCAGCGGTGATGAGAGCTTC+AGG | 0.337698 | 5.3:+474228 | None:intergenic |
| ACTTATTCTTGTTATGTGTC+TGG | 0.338301 | 5.3:-472877 | MS.gene024967:CDS |
| TTCTTGGCTTGAACCAAGAT+AGG | 0.345537 | 5.3:+472795 | None:intergenic |
| GAAATGGTTTAGTGGTGTTA+TGG | 0.353410 | 5.3:-474115 | MS.gene024967:CDS |
| GAATTTGAATTATTGGGATA+AGG | 0.366638 | 5.3:-473800 | MS.gene024967:CDS |
| CTCAATTTCTTATATGCTAT+AGG | 0.369168 | 5.3:-473023 | MS.gene024967:CDS |
| AGAGTTCCGTTCCAAACATT+TGG | 0.378355 | 5.3:-472933 | MS.gene024967:CDS |
| GCATGGCCGCACCAAATGTT+TGG | 0.379459 | 5.3:+472922 | None:intergenic |
| CTCTATAATTCAAATAAGTA+AGG | 0.393245 | 5.3:+473986 | None:intergenic |
| AAACTTTCTAGGTCTAAGTA+TGG | 0.399700 | 5.3:-473128 | MS.gene024967:intron |
| GATAAGGCTAGTACTCTTGC+AGG | 0.406915 | 5.3:-473784 | MS.gene024967:CDS |
| TGAGTTCCCCTCCAACTGAA+TGG | 0.407650 | 5.3:-473657 | MS.gene024967:CDS |
| TTGAGAACGTTCTTTGTAAG+TGG | 0.408514 | 5.3:-472849 | MS.gene024967:CDS |
| GAGTTCCCCTCCAACTGAAT+GGG | 0.414167 | 5.3:-473656 | MS.gene024967:CDS |
| TATAGAGGTCTTCACATTGT+TGG | 0.422639 | 5.3:-473970 | MS.gene024967:CDS |
| CTTACTTATTTGAATTATAG+AGG | 0.425033 | 5.3:-473985 | MS.gene024967:CDS |
| GCATTCAATTGATTCAGAAC+TGG | 0.430163 | 5.3:-472718 | MS.gene024967:CDS |
| ATTCCGTTGCTAGCAGGAAC+AGG | 0.431465 | 5.3:-473685 | MS.gene024967:CDS |
| GCTGAAGTCGGGATGTTGAT+TGG | 0.436679 | 5.3:-473619 | MS.gene024967:CDS |
| GATGAGCTTTCAGCAAATAC+TGG | 0.438639 | 5.3:-473051 | MS.gene024967:CDS |
| ACCTTCTTGAAAACCCCAAA+AGG | 0.445470 | 5.3:+474143 | None:intergenic |
| ACAGAATCCTCAACTCCAAA+TGG | 0.446257 | 5.3:+474318 | None:intergenic |
| CAAGACAAGACCCTCTACTT+TGG | 0.447099 | 5.3:+472603 | None:intergenic |
| TATGAGCTCACCATTGCCTA+TGG | 0.458600 | 5.3:-472664 | MS.gene024967:CDS |
| TCCCTAAGAGAGCAGGAATA+CGG | 0.463074 | 5.3:+474019 | None:intergenic |
| CGGCGGTCCATTTGGAGTTG+AGG | 0.468150 | 5.3:-474325 | MS.gene024967:CDS |
| GTTGAGGATTCTGTTAGAAC+CGG | 0.475041 | 5.3:-474309 | MS.gene024967:CDS |
| AAGAACAAAGATAACAAGAA+AGG | 0.478885 | 5.3:+473909 | None:intergenic |
| CTGTTCCCAAAATCAGACTA+AGG | 0.482200 | 5.3:-473885 | MS.gene024967:CDS |
| CTTCTTGGAATGAGCAAGAT+GGG | 0.487711 | 5.3:-473505 | MS.gene024967:CDS |
| CCCGTATTCCTGCTCTCTTA+GGG | 0.496526 | 5.3:-474020 | MS.gene024967:CDS |
| TATTTGATTCCGTTGCTAGC+AGG | 0.499339 | 5.3:-473691 | MS.gene024967:CDS |
| AAGTAATCAAGAAACAAAAC+AGG | 0.501951 | 5.3:+474078 | None:intergenic |
| GGTCCTCTTCTATCCTTACT+CGG | 0.505486 | 5.3:-474282 | MS.gene024967:CDS |
| GCCGCTGCCATGTCTAACCT+TGG | 0.505741 | 5.3:-473565 | MS.gene024967:CDS |
| ATCAATTGAATGCCAACCAT+TGG | 0.506251 | 5.3:+472728 | None:intergenic |
| GACCTTGATGAGAATACAGC+TGG | 0.509598 | 5.3:+473475 | None:intergenic |
| TTCCAGCTGTATTCTCATCA+AGG | 0.510551 | 5.3:-473477 | MS.gene024967:intron |
| CTGGAGTTATCTTCTTGTCA+TGG | 0.515465 | 5.3:-473073 | MS.gene024967:CDS |
| GGCTAGTACTCTTGCAGGGG+AGG | 0.516455 | 5.3:-473779 | MS.gene024967:CDS |
| CCCTAAGAGAGCAGGAATAC+GGG | 0.517547 | 5.3:+474020 | None:intergenic |
| AGAACAAAGATAACAAGAAA+GGG | 0.517753 | 5.3:+473910 | None:intergenic |
| TTTCTGCTTCAAACAATCCA+AGG | 0.520360 | 5.3:+473548 | None:intergenic |
| ACTTCTTGGAATGAGCAAGA+TGG | 0.526526 | 5.3:-473506 | MS.gene024967:CDS |
| CCTCCAACTGAATGGGCTGA+TGG | 0.532272 | 5.3:-473649 | MS.gene024967:CDS |
| AGCAGGAGGCAAACAAAGCA+TGG | 0.533056 | 5.3:+472905 | None:intergenic |
| CTATAGCATATAAGAAATTG+AGG | 0.538180 | 5.3:+473024 | None:intergenic |
| AACGTGATCCCTAAGAGAGC+AGG | 0.540767 | 5.3:+474012 | None:intergenic |
| CTAATCTTCTACGAAGTCTC+CGG | 0.544287 | 5.3:-474345 | MS.gene024967:CDS |
| GAGAATAAAATGCTAATAGT+CGG | 0.547313 | 5.3:+473101 | None:intergenic |
| CCATCAGCCCATTCAGTTGG+AGG | 0.547465 | 5.3:+473649 | None:intergenic |
| TCTTGGCTTGAACCAAGATA+GGG | 0.561433 | 5.3:+472796 | None:intergenic |
| CTCAACTCCAAATGGACCGC+CGG | 0.561696 | 5.3:+474326 | None:intergenic |
| TAACCATCAGCCCATTCAGT+TGG | 0.562028 | 5.3:+473646 | None:intergenic |
| CATCAGCCCATTCAGTTGGA+GGG | 0.563433 | 5.3:+473650 | None:intergenic |
| GAACATAGCCACCGTTGTGA+GGG | 0.565973 | 5.3:+474190 | None:intergenic |
| GACAATTCTTCTTCCACCAT+AGG | 0.566948 | 5.3:+472648 | None:intergenic |
| GTTTGGAACGGAACTCTGAA+AGG | 0.570334 | 5.3:+472939 | None:intergenic |
| TCAATTGATTCAGAACTGGT+TGG | 0.570609 | 5.3:-472714 | MS.gene024967:CDS |
| TGTCATCACCTTCCAATGGT+TGG | 0.570626 | 5.3:-472740 | MS.gene024967:CDS |
| GTGGTTCTAATCCAAAGTAG+AGG | 0.573793 | 5.3:-472614 | None:intergenic |
| AGTGGAGCAGTAGTAATCGT+TGG | 0.575855 | 5.3:-472831 | MS.gene024967:CDS |
| CCTTCTTGAAAACCCCAAAA+GGG | 0.576626 | 5.3:+474144 | None:intergenic |
| ACTAAGGCGATGGTTTGTTG+TGG | 0.579545 | 5.3:-473869 | MS.gene024967:CDS |
| ATCAGCCCATTCAGTTGGAG+GGG | 0.581194 | 5.3:+473651 | None:intergenic |
| TCTTCTTCCACCATAGGCAA+TGG | 0.581759 | 5.3:+472654 | None:intergenic |
| ATAAGGCTAGTACTCTTGCA+GGG | 0.582318 | 5.3:-473783 | MS.gene024967:CDS |
| CAGCGGTGATGAGAGCTTCA+GGG | 0.582358 | 5.3:+474229 | None:intergenic |
| ACAAGAATAAGTAACAAAGC+AGG | 0.582392 | 5.3:+472888 | None:intergenic |
| CCAAAATCAGACTAAGGCGA+TGG | 0.584574 | 5.3:-473879 | MS.gene024967:CDS |
| AAGGTTAGACATGGCAGCGG+CGG | 0.595108 | 5.3:+473567 | None:intergenic |
| AGAACATAGCCACCGTTGTG+AGG | 0.595254 | 5.3:+474189 | None:intergenic |
| ACTGGTTGGCCATGAAAACA+AGG | 0.596054 | 5.3:-472700 | MS.gene024967:CDS |
| TCTATAATTCAAATAAGTAA+GGG | 0.597927 | 5.3:+473987 | None:intergenic |
| GAAGTCGGGATGTTGATTGG+TGG | 0.598630 | 5.3:-473616 | MS.gene024967:CDS |
| TCCGTTCCAAACATTTGGTG+CGG | 0.599230 | 5.3:-472928 | MS.gene024967:CDS |
| TTTAATAACGTCAATTGGCG+TGG | 0.601030 | 5.3:-473844 | MS.gene024967:CDS |
| AAATTGGTTACTGTTTGAAG+CGG | 0.601450 | 5.3:-472769 | MS.gene024967:CDS |
| GAATTGTCTTTAATGCAAAG+TGG | 0.601773 | 5.3:-472633 | MS.gene024967:CDS |
| ATTGAATGCCAACCATTGGA+AGG | 0.602235 | 5.3:+472732 | None:intergenic |
| GCCGCACCAAATGTTTGGAA+CGG | 0.607396 | 5.3:+472927 | None:intergenic |
| GAGCTCACCATTGCCTATGG+TGG | 0.608182 | 5.3:-472661 | MS.gene024967:CDS |
| GATTCTGTTAGAACCGGCGG+TGG | 0.609699 | 5.3:-474303 | MS.gene024967:CDS |
| GCACCTGTTCCTGCTAGCAA+CGG | 0.624624 | 5.3:+473682 | None:intergenic |
| TCAGGGACACTCCAAATGAG+AGG | 0.625273 | 5.3:+474246 | None:intergenic |
| AAGCCGAGTAAGGATAGAAG+AGG | 0.626094 | 5.3:+474279 | None:intergenic |
| TCCAAGGTTAGACATGGCAG+CGG | 0.631162 | 5.3:+473564 | None:intergenic |
| CAGGGACACTCCAAATGAGA+GGG | 0.634528 | 5.3:+474247 | None:intergenic |
| CAACTGTCATCACCTTCCAA+TGG | 0.639749 | 5.3:-472744 | MS.gene024967:CDS |
| GGATAGAAGAGGACCACCGC+CGG | 0.641963 | 5.3:+474290 | None:intergenic |
| GAGGATTCTGTTAGAACCGG+CGG | 0.644182 | 5.3:-474306 | MS.gene024967:CDS |
| TAGAAGATTAGAGCAATCAG+AGG | 0.645302 | 5.3:+474357 | None:intergenic |
| ATCTTCTACGAAGTCTCCGG+CGG | 0.650130 | 5.3:-474342 | MS.gene024967:CDS |
| AGAATAAGTAACAAAGCAGG+AGG | 0.650240 | 5.3:+472891 | None:intergenic |
| GAAAGTAGTGGCGAGTTCAG+CGG | 0.650242 | 5.3:+474212 | None:intergenic |
| AAACAATCCAAGGTTAGACA+TGG | 0.651742 | 5.3:+473558 | None:intergenic |
| CAGGAATACGGGCTAGCATG+CGG | 0.658741 | 5.3:+474031 | None:intergenic |
| CCAAAAGGGACCAAAAGCAG+AGG | 0.661685 | 5.3:+474158 | None:intergenic |
| GCCACTACTTTCCCTCACAA+CGG | 0.683972 | 5.3:-474201 | MS.gene024967:CDS |
| ACCGTTGTGAGGGAAAGTAG+TGG | 0.687593 | 5.3:+474200 | None:intergenic |
| TAAGGCTAGTACTCTTGCAG+GGG | 0.692679 | 5.3:-473782 | MS.gene024967:CDS |
| ACTACTTTCCCTCACAACGG+TGG | 0.702831 | 5.3:-474198 | MS.gene024967:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATAATTCAAATAAGTAA+GGG | + | chr5.3:473050-473069 | None:intergenic | 15.0% |
| !! | CTCTATAATTCAAATAAGTA+AGG | + | chr5.3:473051-473070 | None:intergenic | 20.0% |
| !! | CTTACTTATTTGAATTATAG+AGG | - | chr5.3:473049-473068 | MS.gene024967:CDS | 20.0% |
| !! | TAGATTGTATATAAGCAATA+TGG | - | chr5.3:473707-473726 | MS.gene024967:CDS | 20.0% |
| !! | TATTAATTGCTTGAACAAAA+AGG | - | chr5.3:473852-473871 | MS.gene024967:CDS | 20.0% |
| !!! | ATCTGTTTTGAAAAAATAGA+TGG | - | chr5.3:473732-473751 | MS.gene024967:CDS | 20.0% |
| !!! | GTTTTGGAATTTGAATTATT+GGG | - | chr5.3:473228-473247 | MS.gene024967:intron | 20.0% |
| !!! | TGTTTTGGAATTTGAATTAT+TGG | - | chr5.3:473227-473246 | MS.gene024967:intron | 20.0% |
| ! | AAGAACAAAGATAACAAGAA+AGG | + | chr5.3:473128-473147 | None:intergenic | 25.0% |
| ! | AAGTAATCAAGAAACAAAAC+AGG | + | chr5.3:472959-472978 | None:intergenic | 25.0% |
| ! | AGAACAAAGATAACAAGAAA+GGG | + | chr5.3:473127-473146 | None:intergenic | 25.0% |
| ! | ATTTGAACTTCATCCTTAAA+GGG | - | chr5.3:473758-473777 | MS.gene024967:CDS | 25.0% |
| ! | CTATAGCATATAAGAAATTG+AGG | + | chr5.3:474013-474032 | None:intergenic | 25.0% |
| ! | CTCAATTTCTTATATGCTAT+AGG | - | chr5.3:474011-474030 | MS.gene024967:CDS | 25.0% |
| ! | GAATTTGAATTATTGGGATA+AGG | - | chr5.3:473234-473253 | MS.gene024967:intron | 25.0% |
| ! | GAGAATAAAATGCTAATAGT+CGG | + | chr5.3:473936-473955 | None:intergenic | 25.0% |
| ! | TAAAAGAAAGATACCATACA+AGG | + | chr5.3:473685-473704 | None:intergenic | 25.0% |
| ! | TTCAAGCCAAGAATAAAAAT+TGG | - | chr5.3:474249-474268 | MS.gene024967:CDS | 25.0% |
| !! | CAGTAACCAATTTTTATTCT+TGG | + | chr5.3:474258-474277 | None:intergenic | 25.0% |
| !! | GTTACTTCAATAACATGTTT+TGG | - | chr5.3:473212-473231 | MS.gene024967:intron | 25.0% |
| !!! | TGGATTTTAATAACGTCAAT+TGG | - | chr5.3:473185-473204 | MS.gene024967:intron | 25.0% |
| !!! | TTTAGTTTCATTTTCTACCT+AGG | + | chr5.3:473632-473651 | None:intergenic | 25.0% |
| AAACTTTCTAGGTCTAAGTA+TGG | - | chr5.3:473906-473925 | MS.gene024967:CDS | 30.0% | |
| AAAGGGTAAAAGCGAAAAAA+TGG | + | chr5.3:473110-473129 | None:intergenic | 30.0% | |
| AAATTGGTTACTGTTTGAAG+CGG | - | chr5.3:474265-474284 | MS.gene024967:CDS | 30.0% | |
| ACAAGAATAAGTAACAAAGC+AGG | + | chr5.3:474149-474168 | None:intergenic | 30.0% | |
| ATTTATCTTGTACCCTATCT+TGG | - | chr5.3:474226-474245 | MS.gene024967:CDS | 30.0% | |
| CTGAAAGGTCTATAAAGATT+TGG | + | chr5.3:474083-474102 | None:intergenic | 30.0% | |
| GAATTGTCTTTAATGCAAAG+TGG | - | chr5.3:474401-474420 | MS.gene024967:CDS | 30.0% | |
| GATTTGAACTTCATCCTTAA+AGG | - | chr5.3:473757-473776 | MS.gene024967:CDS | 30.0% | |
| TGTGGTACTATAAACTTTCT+AGG | - | chr5.3:473895-473914 | MS.gene024967:CDS | 30.0% | |
| TTTGAACTTCATCCTTAAAG+GGG | - | chr5.3:473759-473778 | MS.gene024967:CDS | 30.0% | |
| ! | ACTTATTCTTGTTATGTGTC+TGG | - | chr5.3:474157-474176 | MS.gene024967:CDS | 30.0% |
| !! | TTCAAGAAGGTTTTTGGAAA+TGG | - | chr5.3:472903-472922 | MS.gene024967:CDS | 30.0% |
| !!! | AGAGGTAATAAGGTTAGTTT+TGG | + | chr5.3:472662-472681 | None:intergenic | 30.0% |
| AAACAATCCAAGGTTAGACA+TGG | + | chr5.3:473479-473498 | None:intergenic | 35.0% | |
| AAAGATACCATACAAGGAGA+GGG | + | chr5.3:473679-473698 | None:intergenic | 35.0% | |
| ACAGTGATCTAACATTGATG+TGG | - | chr5.3:473877-473896 | MS.gene024967:CDS | 35.0% | |
| ACCACTCACTTAAGACTAAA+TGG | + | chr5.3:473808-473827 | None:intergenic | 35.0% | |
| AGAATAAGTAACAAAGCAGG+AGG | + | chr5.3:474146-474165 | None:intergenic | 35.0% | |
| ATCAATTGAATGCCAACCAT+TGG | + | chr5.3:474309-474328 | None:intergenic | 35.0% | |
| CATGCGGTTAAAAATAGGAA+AGG | + | chr5.3:472990-473009 | None:intergenic | 35.0% | |
| CTCACTTAAGACTAAATGGT+AGG | + | chr5.3:473804-473823 | None:intergenic | 35.0% | |
| TAGAAGATTAGAGCAATCAG+AGG | + | chr5.3:472680-472699 | None:intergenic | 35.0% | |
| TAGAGCAATCAGAGGTAATA+AGG | + | chr5.3:472672-472691 | None:intergenic | 35.0% | |
| TATAGAGGTCTTCACATTGT+TGG | - | chr5.3:473064-473083 | MS.gene024967:CDS | 35.0% | |
| TTGAGAACGTTCTTTGTAAG+TGG | - | chr5.3:474185-474204 | MS.gene024967:CDS | 35.0% | |
| TTTAATAACGTCAATTGGCG+TGG | - | chr5.3:473190-473209 | MS.gene024967:intron | 35.0% | |
| TTTCTGCTTCAAACAATCCA+AGG | + | chr5.3:473489-473508 | None:intergenic | 35.0% | |
| ! | AGCATTTTATTCTCTGCAAC+TGG | - | chr5.3:473942-473961 | MS.gene024967:CDS | 35.0% |
| ! | AGTGATGCTTTTCAACTTCT+TGG | - | chr5.3:473514-473533 | MS.gene024967:CDS | 35.0% |
| ! | GAAATGGTTTAGTGGTGTTA+TGG | - | chr5.3:472919-472938 | MS.gene024967:CDS | 35.0% |
| ! | GCATTCAATTGATTCAGAAC+TGG | - | chr5.3:474316-474335 | MS.gene024967:CDS | 35.0% |
| ! | TCAATTGATTCAGAACTGGT+TGG | - | chr5.3:474320-474339 | MS.gene024967:CDS | 35.0% |
| ! | TCTTCTTTTTCCCTCTCATT+TGG | - | chr5.3:472777-472796 | MS.gene024967:CDS | 35.0% |
| !! | ACCATTTAGTCTTAAGTGAG+TGG | - | chr5.3:473804-473823 | MS.gene024967:CDS | 35.0% |
| !! | ATGGTTATTTTGCTGAAGTC+GGG | - | chr5.3:473404-473423 | MS.gene024967:intron | 35.0% |
| !! | GATGGTTATTTTGCTGAAGT+CGG | - | chr5.3:473403-473422 | MS.gene024967:intron | 35.0% |
| !! | GGTTTTTGGAAATGGTTTAG+TGG | - | chr5.3:472911-472930 | MS.gene024967:CDS | 35.0% |
| ACAGAATCCTCAACTCCAAA+TGG | + | chr5.3:472719-472738 | None:intergenic | 40.0% | |
| ACCTTCTTGAAAACCCCAAA+AGG | + | chr5.3:472894-472913 | None:intergenic | 40.0% | |
| ACTTCTTGGAATGAGCAAGA+TGG | - | chr5.3:473528-473547 | MS.gene024967:CDS | 40.0% | |
| AGAGTTCCGTTCCAAACATT+TGG | - | chr5.3:474101-474120 | MS.gene024967:CDS | 40.0% | |
| ATAAGGCTAGTACTCTTGCA+GGG | - | chr5.3:473251-473270 | MS.gene024967:intron | 40.0% | |
| ATACCCTCTTTCTCTTTCCT+AGG | - | chr5.3:473612-473631 | MS.gene024967:CDS | 40.0% | |
| ATTGAATGCCAACCATTGGA+AGG | + | chr5.3:474305-474324 | None:intergenic | 40.0% | |
| CCTTCTTGAAAACCCCAAAA+GGG | + | chr5.3:472893-472912 | None:intergenic | 40.0% | |
| CTAATCTTCTACGAAGTCTC+CGG | - | chr5.3:472689-472708 | MS.gene024967:CDS | 40.0% | |
| CTACCTAGGAAAGAGAAAGA+GGG | + | chr5.3:473618-473637 | None:intergenic | 40.0% | |
| CTGGAGTTATCTTCTTGTCA+TGG | - | chr5.3:473961-473980 | MS.gene024967:CDS | 40.0% | |
| CTGTTCCCAAAATCAGACTA+AGG | - | chr5.3:473149-473168 | MS.gene024967:intron | 40.0% | |
| CTTCTTGGAATGAGCAAGAT+GGG | - | chr5.3:473529-473548 | MS.gene024967:CDS | 40.0% | |
| GAAAAAGAAGAAGCCGAGTA+AGG | + | chr5.3:472768-472787 | None:intergenic | 40.0% | |
| GAAAGATACCATACAAGGAG+AGG | + | chr5.3:473680-473699 | None:intergenic | 40.0% | |
| GACAATTCTTCTTCCACCAT+AGG | + | chr5.3:474389-474408 | None:intergenic | 40.0% | |
| GATGAGCTTTCAGCAAATAC+TGG | - | chr5.3:473983-474002 | MS.gene024967:CDS | 40.0% | |
| GCTAGCATGCGGTTAAAAAT+AGG | + | chr5.3:472995-473014 | None:intergenic | 40.0% | |
| GTTGAGGATTCTGTTAGAAC+CGG | - | chr5.3:472725-472744 | MS.gene024967:CDS | 40.0% | |
| TATTTGATTCCGTTGCTAGC+AGG | - | chr5.3:473343-473362 | MS.gene024967:intron | 40.0% | |
| TCCACTACAAATCCCCTTTA+AGG | + | chr5.3:473774-473793 | None:intergenic | 40.0% | |
| TCCTTAAAGGGGATTTGTAG+TGG | - | chr5.3:473770-473789 | MS.gene024967:CDS | 40.0% | |
| TCTACCTAGGAAAGAGAAAG+AGG | + | chr5.3:473619-473638 | None:intergenic | 40.0% | |
| TTCCAGCTGTATTCTCATCA+AGG | - | chr5.3:473557-473576 | MS.gene024967:CDS | 40.0% | |
| ! | CATCGCCTTAGTCTGATTTT+GGG | + | chr5.3:473157-473176 | None:intergenic | 40.0% |
| ! | CTTTGGATATCCTCTGCTTT+TGG | - | chr5.3:472866-472885 | MS.gene024967:CDS | 40.0% |
| ! | GCTTTCGGAAACGTTTTACT+TGG | + | chr5.3:473289-473308 | None:intergenic | 40.0% |
| ! | TCTTGGCTTGAACCAAGATA+GGG | + | chr5.3:474241-474260 | None:intergenic | 40.0% |
| ! | TTCTTGGCTTGAACCAAGAT+AGG | + | chr5.3:474242-474261 | None:intergenic | 40.0% |
| !! | CAAAAGCATCCCCCAAAAAA+GGG | + | chr5.3:473311-473330 | None:intergenic | 40.0% |
| !! | GGATGTTGATTGGTGGTTTT+TGG | - | chr5.3:473425-473444 | MS.gene024967:intron | 40.0% |
| !! | GGGGTTTTCAAGAAGGTTTT+TGG | - | chr5.3:472897-472916 | MS.gene024967:CDS | 40.0% |
| !!! | GTGGTTTTTGGCTTAAACTG+TGG | - | chr5.3:473437-473456 | MS.gene024967:intron | 40.0% |
| !!! | GTTTCCGAAAGCCCTTTTTT+GGG | - | chr5.3:473297-473316 | MS.gene024967:intron | 40.0% |
| !!! | TTTCCGAAAGCCCTTTTTTG+GGG | - | chr5.3:473298-473317 | MS.gene024967:intron | 40.0% |
| AAGCCGAGTAAGGATAGAAG+AGG | + | chr5.3:472758-472777 | None:intergenic | 45.0% | |
| ACAACGGTGGCTATGTTCTT+TGG | - | chr5.3:472849-472868 | MS.gene024967:CDS | 45.0% | |
| AGTGGAGCAGTAGTAATCGT+TGG | - | chr5.3:474203-474222 | MS.gene024967:CDS | 45.0% | |
| ATCCCCCAAAAAAGGGCTTT+CGG | + | chr5.3:473304-473323 | None:intergenic | 45.0% | |
| CAACTGTCATCACCTTCCAA+TGG | - | chr5.3:474290-474309 | MS.gene024967:CDS | 45.0% | |
| CCAAAATCAGACTAAGGCGA+TGG | - | chr5.3:473155-473174 | MS.gene024967:intron | 45.0% | |
| GACCTTGATGAGAATACAGC+TGG | + | chr5.3:473562-473581 | None:intergenic | 45.0% | |
| GATAAGGCTAGTACTCTTGC+AGG | - | chr5.3:473250-473269 | MS.gene024967:intron | 45.0% | |
| GGTCCTCTTCTATCCTTACT+CGG | - | chr5.3:472752-472771 | MS.gene024967:CDS | 45.0% | |
| TAACCATCAGCCCATTCAGT+TGG | + | chr5.3:473391-473410 | None:intergenic | 45.0% | |
| TAAGGCTAGTACTCTTGCAG+GGG | - | chr5.3:473252-473271 | MS.gene024967:intron | 45.0% | |
| TATGAGCTCACCATTGCCTA+TGG | - | chr5.3:474370-474389 | MS.gene024967:CDS | 45.0% | |
| TCCCTAAGAGAGCAGGAATA+CGG | + | chr5.3:473018-473037 | None:intergenic | 45.0% | |
| TCTTCTTCCACCATAGGCAA+TGG | + | chr5.3:474383-474402 | None:intergenic | 45.0% | |
| TGTCATCACCTTCCAATGGT+TGG | - | chr5.3:474294-474313 | MS.gene024967:CDS | 45.0% | |
| TGTGATACCCTCTCCTTGTA+TGG | - | chr5.3:473669-473688 | MS.gene024967:CDS | 45.0% | |
| ! | ACTGGTTGGCCATGAAAACA+AGG | - | chr5.3:474334-474353 | MS.gene024967:CDS | 45.0% |
| ! | CCATCGCCTTAGTCTGATTT+TGG | + | chr5.3:473158-473177 | None:intergenic | 45.0% |
| ! | GTTTGGAACGGAACTCTGAA+AGG | + | chr5.3:474098-474117 | None:intergenic | 45.0% |
| ! | TCCGTTCCAAACATTTGGTG+CGG | - | chr5.3:474106-474125 | MS.gene024967:CDS | 45.0% |
| !! | ACTAAGGCGATGGTTTGTTG+TGG | - | chr5.3:473165-473184 | MS.gene024967:intron | 45.0% |
| !! | CCAAAAGCATCCCCCAAAAA+AGG | + | chr5.3:473312-473331 | None:intergenic | 45.0% |
| !! | CTCTGCTTTTGGTCCCTTTT+GGG | - | chr5.3:472877-472896 | MS.gene024967:CDS | 45.0% |
| !! | TCTGCTTTTGGTCCCTTTTG+GGG | - | chr5.3:472878-472897 | MS.gene024967:CDS | 45.0% |
| !! | TTTTTGGGGGATGCTTTTGG+TGG | - | chr5.3:473312-473331 | MS.gene024967:intron | 45.0% |
| !!! | CCCTTTTGGGGTTTTCAAGA+AGG | - | chr5.3:472890-472909 | MS.gene024967:CDS | 45.0% |
| !!! | CCTTTTTTGGGGGATGCTTT+TGG | - | chr5.3:473309-473328 | MS.gene024967:intron | 45.0% |
| !!! | CGTTTCCGAAAGCCCTTTTT+TGG | - | chr5.3:473296-473315 | MS.gene024967:intron | 45.0% |
| !!! | GCTCTGTGTCCTTGTTTTCA+TGG | + | chr5.3:474346-474365 | None:intergenic | 45.0% |
| !!! | TTCCGAAAGCCCTTTTTTGG+GGG | - | chr5.3:473299-473318 | MS.gene024967:intron | 45.0% |
| AACGTGATCCCTAAGAGAGC+AGG | + | chr5.3:473025-473044 | None:intergenic | 50.0% | |
| ACCGTTGTGAGGGAAAGTAG+TGG | + | chr5.3:472837-472856 | None:intergenic | 50.0% | |
| ACTACTTTCCCTCACAACGG+TGG | - | chr5.3:472836-472855 | MS.gene024967:CDS | 50.0% | |
| AGAACATAGCCACCGTTGTG+AGG | + | chr5.3:472848-472867 | None:intergenic | 50.0% | |
| AGCAGGAGGCAAACAAAGCA+TGG | + | chr5.3:474132-474151 | None:intergenic | 50.0% | |
| ATCAGCCCATTCAGTTGGAG+GGG | + | chr5.3:473386-473405 | None:intergenic | 50.0% | |
| ATCTTCTACGAAGTCTCCGG+CGG | - | chr5.3:472692-472711 | MS.gene024967:CDS | 50.0% | |
| ATTCCGTTGCTAGCAGGAAC+AGG | - | chr5.3:473349-473368 | MS.gene024967:intron | 50.0% | |
| CAGGGACACTCCAAATGAGA+GGG | + | chr5.3:472790-472809 | None:intergenic | 50.0% | |
| CATCAGCCCATTCAGTTGGA+GGG | + | chr5.3:473387-473406 | None:intergenic | 50.0% | |
| CCAAAAGGGACCAAAAGCAG+AGG | + | chr5.3:472879-472898 | None:intergenic | 50.0% | |
| CCCGTATTCCTGCTCTCTTA+GGG | - | chr5.3:473014-473033 | MS.gene024967:CDS | 50.0% | |
| CCCTAAGAGAGCAGGAATAC+GGG | + | chr5.3:473017-473036 | None:intergenic | 50.0% | |
| GAAAGTAGTGGCGAGTTCAG+CGG | + | chr5.3:472825-472844 | None:intergenic | 50.0% | |
| GAACATAGCCACCGTTGTGA+GGG | + | chr5.3:472847-472866 | None:intergenic | 50.0% | |
| GAGGATTCTGTTAGAACCGG+CGG | - | chr5.3:472728-472747 | MS.gene024967:CDS | 50.0% | |
| GAGTTCCCCTCCAACTGAAT+GGG | - | chr5.3:473378-473397 | MS.gene024967:intron | 50.0% | |
| GCCACTACTTTCCCTCACAA+CGG | - | chr5.3:472833-472852 | MS.gene024967:CDS | 50.0% | |
| GCCGCACCAAATGTTTGGAA+CGG | + | chr5.3:474110-474129 | None:intergenic | 50.0% | |
| GCTGAAGTCGGGATGTTGAT+TGG | - | chr5.3:473415-473434 | MS.gene024967:intron | 50.0% | |
| TCAGGGACACTCCAAATGAG+AGG | + | chr5.3:472791-472810 | None:intergenic | 50.0% | |
| TCCAAGGTTAGACATGGCAG+CGG | + | chr5.3:473473-473492 | None:intergenic | 50.0% | |
| TGAGTTCCCCTCCAACTGAA+TGG | - | chr5.3:473377-473396 | MS.gene024967:intron | 50.0% | |
| ! | GAAGTCGGGATGTTGATTGG+TGG | - | chr5.3:473418-473437 | MS.gene024967:intron | 50.0% |
| !! | CCTCTGCTTTTGGTCCCTTT+TGG | - | chr5.3:472876-472895 | MS.gene024967:CDS | 50.0% |
| AAGGTTAGACATGGCAGCGG+CGG | + | chr5.3:473470-473489 | None:intergenic | 55.0% | |
| CAGCGGTGATGAGAGCTTCA+GGG | + | chr5.3:472808-472827 | None:intergenic | 55.0% | |
| CCATCAGCCCATTCAGTTGG+AGG | + | chr5.3:473388-473407 | None:intergenic | 55.0% | |
| CTCAACTCCAAATGGACCGC+CGG | + | chr5.3:472711-472730 | None:intergenic | 55.0% | |
| GAGCTCACCATTGCCTATGG+TGG | - | chr5.3:474373-474392 | MS.gene024967:CDS | 55.0% | |
| GATTCTGTTAGAACCGGCGG+TGG | - | chr5.3:472731-472750 | MS.gene024967:CDS | 55.0% | |
| GCACCTGTTCCTGCTAGCAA+CGG | + | chr5.3:473355-473374 | None:intergenic | 55.0% | |
| GCATGGCCGCACCAAATGTT+TGG | + | chr5.3:474115-474134 | None:intergenic | 55.0% | |
| GCCCGTATTCCTGCTCTCTT+AGG | - | chr5.3:473013-473032 | MS.gene024967:CDS | 55.0% | |
| TCAGCGGTGATGAGAGCTTC+AGG | + | chr5.3:472809-472828 | None:intergenic | 55.0% | |
| !! | CAGGAATACGGGCTAGCATG+CGG | + | chr5.3:473006-473025 | None:intergenic | 55.0% |
| !! | CCTCCAACTGAATGGGCTGA+TGG | - | chr5.3:473385-473404 | MS.gene024967:intron | 55.0% |
| GAAGTCTCCGGCGGTCCATT+TGG | - | chr5.3:472701-472720 | MS.gene024967:CDS | 60.0% | |
| GCCGCTGCCATGTCTAACCT+TGG | - | chr5.3:473469-473488 | MS.gene024967:intron | 60.0% | |
| GGATAGAAGAGGACCACCGC+CGG | + | chr5.3:472747-472766 | None:intergenic | 60.0% | |
| GGCTAGTACTCTTGCAGGGG+AGG | - | chr5.3:473255-473274 | MS.gene024967:intron | 60.0% | |
| ! | CGGCGGTCCATTTGGAGTTG+AGG | - | chr5.3:472709-472728 | MS.gene024967:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 472617 | 474439 | 472617 | ID=MS.gene024967 |
| chr5.3 | mRNA | 472617 | 474439 | 472617 | ID=MS.gene024967.t1;Parent=MS.gene024967 |
| chr5.3 | exon | 473478 | 474439 | 473478 | ID=MS.gene024967.t1.exon1;Parent=MS.gene024967.t1 |
| chr5.3 | CDS | 473478 | 474439 | 473478 | ID=cds.MS.gene024967.t1;Parent=MS.gene024967.t1 |
| chr5.3 | exon | 472617 | 473139 | 472617 | ID=MS.gene024967.t1.exon2;Parent=MS.gene024967.t1 |
| chr5.3 | CDS | 472617 | 473139 | 472617 | ID=cds.MS.gene024967.t1;Parent=MS.gene024967.t1 |
| Gene Sequence |
| Protein sequence |
