Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72828.t1 | XP_003612596.2 | 98.2 | 457 | 8 | 0 | 1 | 457 | 35 | 491 | 2.60E-262 | 914.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72828.t1 | Q9C6S5 | 75.5 | 444 | 108 | 1 | 2 | 445 | 39 | 481 | 1.1e-200 | 700.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72828.t1 | A0A072UDZ4 | 98.2 | 457 | 8 | 0 | 1 | 457 | 19 | 475 | 1.9e-262 | 914.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22262 | MS.gene72828 | PPI |
| MS.gene92363 | MS.gene72828 | PPI |
| MS.gene72828 | MS.gene046947 | PPI |
| MS.gene72828 | MS.gene019112 | PPI |
| MS.gene40531 | MS.gene72828 | PPI |
| MS.gene72828 | MS.gene070082 | PPI |
| MS.gene72828 | MS.gene039946 | PPI |
| MS.gene72828 | MS.gene00289 | PPI |
| MS.gene72828 | MS.gene024967 | PPI |
| MS.gene52398 | MS.gene72828 | PPI |
| MS.gene72828 | MS.gene84987 | PPI |
| MS.gene028082 | MS.gene72828 | PPI |
| MS.gene72828 | MS.gene004548 | PPI |
| MS.gene68906 | MS.gene72828 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72828.t1 | MTR_5g026780 | 98.249 | 457 | 8 | 0 | 1 | 457 | 35 | 491 | 0.0 | 911 |
| MS.gene72828.t1 | MTR_5g026780 | 98.249 | 457 | 8 | 0 | 1 | 457 | 19 | 475 | 0.0 | 910 |
| MS.gene72828.t1 | MTR_0031s0060 | 77.384 | 451 | 77 | 2 | 6 | 456 | 134 | 559 | 0.0 | 709 |
| MS.gene72828.t1 | MTR_1g112950 | 73.529 | 442 | 116 | 1 | 4 | 445 | 18 | 458 | 0.0 | 669 |
| MS.gene72828.t1 | MTR_5g005160 | 55.955 | 445 | 193 | 3 | 6 | 449 | 4 | 446 | 3.14e-171 | 490 |
| MS.gene72828.t1 | MTR_8g085630 | 48.292 | 439 | 225 | 2 | 2 | 438 | 30 | 468 | 9.86e-151 | 437 |
| MS.gene72828.t1 | MTR_5g064750 | 47.392 | 441 | 230 | 2 | 7 | 445 | 20 | 460 | 4.50e-137 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72828.t1 | AT1G31830 | 75.281 | 445 | 109 | 1 | 2 | 446 | 39 | 482 | 0.0 | 701 |
| MS.gene72828.t1 | AT1G31830 | 75.281 | 445 | 109 | 1 | 2 | 446 | 23 | 466 | 0.0 | 700 |
| MS.gene72828.t1 | AT5G05630 | 70.312 | 448 | 132 | 1 | 2 | 448 | 43 | 490 | 0.0 | 672 |
| MS.gene72828.t1 | AT1G31820 | 67.991 | 453 | 142 | 2 | 7 | 457 | 31 | 482 | 0.0 | 616 |
| MS.gene72828.t1 | AT3G19553 | 57.018 | 456 | 183 | 6 | 2 | 454 | 18 | 463 | 4.03e-177 | 504 |
| MS.gene72828.t1 | AT3G13620 | 47.797 | 454 | 232 | 5 | 3 | 453 | 21 | 472 | 9.85e-140 | 409 |
Find 112 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTTCAGGTTTCATTTC+TGG | 0.066003 | 5.1:-17443307 | None:intergenic |
| GCAGCCTTGTCTCAAATTTA+TGG | 0.146769 | 5.1:+17444053 | MS.gene72828:CDS |
| GTCTCAACAAACCATCTTTC+AGG | 0.214862 | 5.1:-17443319 | None:intergenic |
| AATTCCAATCAACGTCATTT+AGG | 0.226372 | 5.1:-17443345 | None:intergenic |
| GTTTGGGTTTCATCTGCTTT+AGG | 0.250028 | 5.1:+17443019 | MS.gene72828:CDS |
| TCTTACTTATTTGAACTATA+GGG | 0.250588 | 5.1:+17443201 | MS.gene72828:CDS |
| GGACTTGTTGCTGTTTGTTT+AGG | 0.252050 | 5.1:+17443238 | MS.gene72828:CDS |
| CTCATCTTCTATGAGGTATC+AGG | 0.259870 | 5.1:+17442845 | MS.gene72828:CDS |
| GACTTGTTGCTGTTTGTTTA+GGG | 0.269303 | 5.1:+17443239 | MS.gene72828:CDS |
| TCCTCATGTGATTTGCTCTT+GGG | 0.281304 | 5.1:-17442796 | None:intergenic |
| GAGAATTTCTTGTACTGTAT+TGG | 0.285105 | 5.1:+17443829 | MS.gene72828:CDS |
| CGTCACGGAACACCTCTTAT+AGG | 0.288096 | 5.1:+17443739 | MS.gene72828:CDS |
| GTACTGTATTGGAATGATTC+TGG | 0.296739 | 5.1:+17443840 | MS.gene72828:CDS |
| AAAATAGTGGTTATGTTGTT+TGG | 0.305948 | 5.1:+17443002 | MS.gene72828:CDS |
| TATATTTGAATACGCTGTTT+TGG | 0.313685 | 5.1:+17443368 | MS.gene72828:CDS |
| TTATCTTAAGTCAGCGGTTC+CGG | 0.313847 | 5.1:+17443126 | MS.gene72828:CDS |
| CTGGTGTGATTCTACTATCT+TGG | 0.316221 | 5.1:+17443779 | MS.gene72828:CDS |
| TTCCTCATGTGATTTGCTCT+TGG | 0.325329 | 5.1:-17442797 | None:intergenic |
| TTCACCAGCAAGAGTACTTA+TGG | 0.329309 | 5.1:-17443410 | None:intergenic |
| TCTGAAATTGCTATGATCAT+TGG | 0.341902 | 5.1:+17443571 | MS.gene72828:CDS |
| TACTTCTTTCCTCTTCTGAT+TGG | 0.345365 | 5.1:+17443499 | MS.gene72828:CDS |
| TTCTTACTTATTTGAACTAT+AGG | 0.348712 | 5.1:+17443200 | MS.gene72828:CDS |
| AGCGACTCTTACCAGCTTCT+AGG | 0.353132 | 5.1:+17443670 | MS.gene72828:CDS |
| GGTCCTTTGTTAGCTTTACT+TGG | 0.355819 | 5.1:+17442905 | MS.gene72828:CDS |
| TCCTCTCCATTGACAAAATC+AGG | 0.367559 | 5.1:-17444117 | None:intergenic |
| AGCTTTGATTACTGCTGAAA+TGG | 0.368117 | 5.1:+17442964 | MS.gene72828:CDS |
| TTCAGCAGGGTTGGATGAAA+TGG | 0.368473 | 5.1:+17443056 | MS.gene72828:CDS |
| GTCACGGAACACCTCTTATA+GGG | 0.371487 | 5.1:+17443740 | MS.gene72828:CDS |
| CTTGTATGGCCGAGGTGCGT+TGG | 0.376993 | 5.1:-17443899 | None:intergenic |
| TTGTATGGCCGAGGTGCGTT+GGG | 0.377235 | 5.1:-17443898 | None:intergenic |
| CAAACCTAAATGACGTTGAT+TGG | 0.381343 | 5.1:+17443341 | MS.gene72828:CDS |
| GAGGTATCAGGAGGACCTTT+TGG | 0.385759 | 5.1:+17442857 | MS.gene72828:CDS |
| GTCCACAGCTCGCGCTGAAC+AGG | 0.387861 | 5.1:-17443535 | None:intergenic |
| TCAGCAGTAATCAAAGCTTC+AGG | 0.389410 | 5.1:-17442959 | None:intergenic |
| TATAGGGGTTTAACCATTGT+TGG | 0.391261 | 5.1:+17443217 | MS.gene72828:CDS |
| AAATAGTGGTTATGTTGTTT+GGG | 0.402210 | 5.1:+17443003 | MS.gene72828:CDS |
| AAGGTACCAGGCGGAACGAC+TGG | 0.402981 | 5.1:+17443919 | MS.gene72828:CDS |
| TGGAGAGGACACTCAATCTT+TGG | 0.404986 | 5.1:+17444131 | MS.gene72828:CDS |
| GTAAGAGTCGCTACTCATTT+CGG | 0.405142 | 5.1:-17443659 | None:intergenic |
| TCTTATAAGCGTCGTTGCTA+TGG | 0.419274 | 5.1:+17444014 | MS.gene72828:CDS |
| GACTCCATAAGTACTCTTGC+TGG | 0.422201 | 5.1:+17443406 | MS.gene72828:CDS |
| CAAAGCATAAAACAAACCTT+TGG | 0.423701 | 5.1:-17443458 | None:intergenic |
| CGCTTATAAGAAATACTTTG+AGG | 0.440103 | 5.1:-17444002 | None:intergenic |
| GTTCCGCCTGGTACCTTGTA+TGG | 0.443241 | 5.1:-17443913 | None:intergenic |
| AAAGCATAAAACAAACCTTT+GGG | 0.444037 | 5.1:-17443457 | None:intergenic |
| ATGTGATTTGCTCTTGGGGA+AGG | 0.449749 | 5.1:-17442791 | None:intergenic |
| TTTCCTCTTCTGATTGGTAC+CGG | 0.464126 | 5.1:+17443505 | MS.gene72828:CDS |
| TTCCTGTTCAGCGCGAGCTG+TGG | 0.473482 | 5.1:+17443533 | MS.gene72828:CDS |
| CAGAAATGAAACCTGAAAGA+TGG | 0.473873 | 5.1:+17443308 | MS.gene72828:CDS |
| GAGGAGTGTGGTTGAGATGG+TGG | 0.475640 | 5.1:+17443593 | MS.gene72828:CDS |
| GCGGTTCCGGCGGTAGGTGG+TGG | 0.477031 | 5.1:+17443139 | MS.gene72828:CDS |
| TGCTTTGATCCTGGTTGTTG+TGG | 0.480119 | 5.1:+17443474 | MS.gene72828:CDS |
| CCTCATGTGATTTGCTCTTG+GGG | 0.493232 | 5.1:-17442795 | None:intergenic |
| ACCTAGAGTATTTGCAACAT+GGG | 0.501565 | 5.1:+17443165 | MS.gene72828:CDS |
| CTTACTTATTTGAACTATAG+GGG | 0.504401 | 5.1:+17443202 | MS.gene72828:CDS |
| CAACGCACCTCGGCCATACA+AGG | 0.507655 | 5.1:+17443900 | MS.gene72828:CDS |
| TGCAGCTGCAATGTCGAACA+TGG | 0.508404 | 5.1:+17443624 | MS.gene72828:CDS |
| ACCACACATATCAAAATTGT+AGG | 0.508853 | 5.1:-17443964 | None:intergenic |
| AGATAATCAAGAAATAGAAC+AGG | 0.509628 | 5.1:-17443109 | None:intergenic |
| GCTTCTAGGAATGGCTGAGA+GGG | 0.512206 | 5.1:+17443684 | MS.gene72828:CDS |
| GGTTGGATGAAATGGCTTAG+TGG | 0.514133 | 5.1:+17443064 | MS.gene72828:CDS |
| CCTGGTACCTTGTATGGCCG+AGG | 0.514730 | 5.1:-17443907 | None:intergenic |
| TGTTCCGTGACGAGACCTCT+TGG | 0.516304 | 5.1:-17443728 | None:intergenic |
| ACAGTATCCTCAACACCAAA+AGG | 0.518485 | 5.1:-17442872 | None:intergenic |
| CAGCGCGAGCTGTGGACTGA+CGG | 0.522144 | 5.1:+17443541 | MS.gene72828:CDS |
| AAGTCAGCGGTTCCGGCGGT+AGG | 0.529529 | 5.1:+17443133 | MS.gene72828:CDS |
| AGGTACCAGGCGGAACGACT+GGG | 0.531525 | 5.1:+17443920 | MS.gene72828:CDS |
| GCTTTGATTACTGCTGAAAT+GGG | 0.532215 | 5.1:+17442965 | MS.gene72828:CDS |
| AAAACCCCATGAAAACAAAT+GGG | 0.535277 | 5.1:-17443276 | None:intergenic |
| TTGACAAAATCAGGTAGCTC+GGG | 0.536795 | 5.1:-17444108 | None:intergenic |
| AGCGTCGTTGCTATGGCGAT+TGG | 0.537243 | 5.1:+17444021 | MS.gene72828:CDS |
| TCAGCGGTTCCGGCGGTAGG+TGG | 0.541125 | 5.1:+17443136 | MS.gene72828:CDS |
| AGCGCGAGCTGTGGACTGAC+GGG | 0.541964 | 5.1:+17443542 | MS.gene72828:CDS |
| ATTGACAAAATCAGGTAGCT+CGG | 0.544293 | 5.1:-17444109 | None:intergenic |
| CCTCGGCCATACAAGGTACC+AGG | 0.545909 | 5.1:+17443907 | MS.gene72828:CDS |
| GCTTATAAGAAATACTTTGA+GGG | 0.545998 | 5.1:-17444001 | None:intergenic |
| CTCTTACCAGCTTCTAGGAA+TGG | 0.550271 | 5.1:+17443675 | MS.gene72828:CDS |
| GAGGATACTGTGAAAGCAGC+CGG | 0.552314 | 5.1:+17442884 | MS.gene72828:CDS |
| GAAATTGCTATGATCATTGG+AGG | 0.553545 | 5.1:+17443574 | MS.gene72828:CDS |
| TTGGAGGAGTGTGGTTGAGA+TGG | 0.554137 | 5.1:+17443590 | MS.gene72828:CDS |
| TCTCAGCCATTCCTAGAAGC+TGG | 0.555031 | 5.1:-17443681 | None:intergenic |
| ATTGCCCCAGTCGTTCCGCC+TGG | 0.557837 | 5.1:-17443925 | None:intergenic |
| TACCTAGAGTATTTGCAACA+TGG | 0.559602 | 5.1:+17443164 | MS.gene72828:CDS |
| ACACATATCAAAATTGTAGG+AGG | 0.563188 | 5.1:-17443961 | None:intergenic |
| CCCCATGTTGCAAATACTCT+AGG | 0.566170 | 5.1:-17443166 | None:intergenic |
| TTCTCCATAAATTTGAGACA+AGG | 0.576827 | 5.1:-17444057 | None:intergenic |
| ACCATGTTCCCTGAAAATAG+TGG | 0.576856 | 5.1:+17442989 | MS.gene72828:CDS |
| AAGTAAAGCTAACAAAGGAC+CGG | 0.582231 | 5.1:-17442903 | None:intergenic |
| TCTTAAGTCAGCGGTTCCGG+CGG | 0.606842 | 5.1:+17443129 | MS.gene72828:CDS |
| TCTTGATTATCTTAAGTCAG+CGG | 0.608921 | 5.1:+17443120 | MS.gene72828:CDS |
| TATAAGAAATACTTTGAGGG+AGG | 0.614116 | 5.1:-17443998 | None:intergenic |
| CCTAGAGTATTTGCAACATG+GGG | 0.617913 | 5.1:+17443166 | MS.gene72828:CDS |
| AGAAGTATGCCACAACAACC+AGG | 0.618863 | 5.1:-17443483 | None:intergenic |
| TCAAACACCCCAACGCACCT+CGG | 0.622823 | 5.1:+17443890 | MS.gene72828:CDS |
| CACATATCAAAATTGTAGGA+GGG | 0.624715 | 5.1:-17443960 | None:intergenic |
| GCGCTGAACAGGAACAGCAC+CGG | 0.629684 | 5.1:-17443524 | None:intergenic |
| AACAGCAACAAGTCCAACAA+TGG | 0.629856 | 5.1:-17443230 | None:intergenic |
| TCAGGAATGCTCCATATGAA+CGG | 0.630060 | 5.1:-17442941 | None:intergenic |
| TTCACCAAGAGGTCTCGTCA+CGG | 0.632873 | 5.1:+17443724 | MS.gene72828:CDS |
| AGCTTCTAGGAATGGCTGAG+AGG | 0.637348 | 5.1:+17443683 | MS.gene72828:CDS |
| ATCTTCTATGAGGTATCAGG+AGG | 0.637496 | 5.1:+17442848 | MS.gene72828:CDS |
| AATCCAAGTAAAGCTAACAA+AGG | 0.637507 | 5.1:-17442908 | None:intergenic |
| CCCCAAGAGCAAATCACATG+AGG | 0.644096 | 5.1:+17442795 | MS.gene72828:CDS |
| GGTACCAGGCGGAACGACTG+GGG | 0.648129 | 5.1:+17443921 | MS.gene72828:CDS |
| GCACCGGTACCAATCAGAAG+AGG | 0.649774 | 5.1:-17443508 | None:intergenic |
| CTTCTAGGAATGGCTGAGAG+GGG | 0.660938 | 5.1:+17443685 | MS.gene72828:CDS |
| CTATGATCATTGGAGGAGTG+TGG | 0.665613 | 5.1:+17443581 | MS.gene72828:CDS |
| GGTAAACCACCACCTACCGC+CGG | 0.669905 | 5.1:-17443145 | None:intergenic |
| GCAGCTGCAATGTCGAACAT+GGG | 0.671433 | 5.1:+17443625 | MS.gene72828:CDS |
| TGTATGGCCGAGGTGCGTTG+GGG | 0.683744 | 5.1:-17443897 | None:intergenic |
| AGATAGTAGAATCACACCAG+AGG | 0.717929 | 5.1:-17443776 | None:intergenic |
| CGGCCATACAAGGTACCAGG+CGG | 0.740851 | 5.1:+17443910 | MS.gene72828:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTACTTATTTGAACTATA+GGG | + | chr5.1:17443201-17443220 | MS.gene72828:CDS | 20.0% |
| !! | TTCTTACTTATTTGAACTAT+AGG | + | chr5.1:17443200-17443219 | MS.gene72828:CDS | 20.0% |
| ! | AAAATAGTGGTTATGTTGTT+TGG | + | chr5.1:17443002-17443021 | MS.gene72828:CDS | 25.0% |
| ! | AAAGCATAAAACAAACCTTT+GGG | - | chr5.1:17443460-17443479 | None:intergenic | 25.0% |
| ! | AATTTATGGAGAAAAAGAGA+TGG | + | chr5.1:17444067-17444086 | MS.gene72828:CDS | 25.0% |
| ! | AGATAATCAAGAAATAGAAC+AGG | - | chr5.1:17443112-17443131 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAACTATAG+GGG | + | chr5.1:17443202-17443221 | MS.gene72828:CDS | 25.0% |
| ! | GCTTATAAGAAATACTTTGA+GGG | - | chr5.1:17444004-17444023 | None:intergenic | 25.0% |
| !! | AAATAGTGGTTATGTTGTTT+GGG | + | chr5.1:17443003-17443022 | MS.gene72828:CDS | 25.0% |
| !! | TATATTTGAATACGCTGTTT+TGG | + | chr5.1:17443368-17443387 | MS.gene72828:CDS | 25.0% |
| !!! | GTTTTGGAATCTCAATTATT+GGG | + | chr5.1:17443384-17443403 | MS.gene72828:CDS | 25.0% |
| !!! | TGTTTTGGAATCTCAATTAT+TGG | + | chr5.1:17443383-17443402 | MS.gene72828:CDS | 25.0% |
| AAAAACCCCATGAAAACAAA+TGG | - | chr5.1:17443280-17443299 | None:intergenic | 30.0% | |
| AAAACCCCATGAAAACAAAT+GGG | - | chr5.1:17443279-17443298 | None:intergenic | 30.0% | |
| AATCCAAGTAAAGCTAACAA+AGG | - | chr5.1:17442911-17442930 | None:intergenic | 30.0% | |
| AATTCCAATCAACGTCATTT+AGG | - | chr5.1:17443348-17443367 | None:intergenic | 30.0% | |
| ACACATATCAAAATTGTAGG+AGG | - | chr5.1:17443964-17443983 | None:intergenic | 30.0% | |
| ACCACACATATCAAAATTGT+AGG | - | chr5.1:17443967-17443986 | None:intergenic | 30.0% | |
| CAAAGCATAAAACAAACCTT+TGG | - | chr5.1:17443461-17443480 | None:intergenic | 30.0% | |
| CACATATCAAAATTGTAGGA+GGG | - | chr5.1:17443963-17443982 | None:intergenic | 30.0% | |
| CGCTTATAAGAAATACTTTG+AGG | - | chr5.1:17444005-17444024 | None:intergenic | 30.0% | |
| GAAAAAAGAATCCCTATAAG+AGG | - | chr5.1:17443754-17443773 | None:intergenic | 30.0% | |
| GAGAATTTCTTGTACTGTAT+TGG | + | chr5.1:17443829-17443848 | MS.gene72828:CDS | 30.0% | |
| TAGAAGATGAGAAAAACAAG+AGG | - | chr5.1:17442836-17442855 | None:intergenic | 30.0% | |
| TCTTGATTATCTTAAGTCAG+CGG | + | chr5.1:17443120-17443139 | MS.gene72828:CDS | 30.0% | |
| ! | ACAACATAACCACTATTTTC+AGG | - | chr5.1:17443001-17443020 | None:intergenic | 30.0% |
| ! | CAACATAACCACTATTTTCA+GGG | - | chr5.1:17443000-17443019 | None:intergenic | 30.0% |
| ! | TATAAGAAATACTTTGAGGG+AGG | - | chr5.1:17444001-17444020 | None:intergenic | 30.0% |
| ! | TCTGAAATTGCTATGATCAT+TGG | + | chr5.1:17443571-17443590 | MS.gene72828:CDS | 30.0% |
| ! | TGTTTTTCTCATCTTCTATG+AGG | + | chr5.1:17442838-17442857 | MS.gene72828:CDS | 30.0% |
| ! | TTCTCCATAAATTTGAGACA+AGG | - | chr5.1:17444060-17444079 | None:intergenic | 30.0% |
| !! | TCCTACAATTTTGATATGTG+TGG | + | chr5.1:17443963-17443982 | MS.gene72828:CDS | 30.0% |
| !!! | GTTAGCTTTACTTGGATTTT+TGG | + | chr5.1:17442913-17442932 | MS.gene72828:CDS | 30.0% |
| !!! | TTTGTTTTATGCTTTGATCC+TGG | + | chr5.1:17443465-17443484 | MS.gene72828:CDS | 30.0% |
| !!! | TTTTGGTTTTTCCGTTCATA+TGG | + | chr5.1:17442930-17442949 | MS.gene72828:CDS | 30.0% |
| AAGTAAAGCTAACAAAGGAC+CGG | - | chr5.1:17442906-17442925 | None:intergenic | 35.0% | |
| ATTGACAAAATCAGGTAGCT+CGG | - | chr5.1:17444112-17444131 | None:intergenic | 35.0% | |
| CAAACCTAAATGACGTTGAT+TGG | + | chr5.1:17443341-17443360 | MS.gene72828:CDS | 35.0% | |
| CAGAAATGAAACCTGAAAGA+TGG | + | chr5.1:17443308-17443327 | MS.gene72828:CDS | 35.0% | |
| CCAAAGAAAAATCTTCCCAA+AGG | + | chr5.1:17443442-17443461 | MS.gene72828:CDS | 35.0% | |
| GAAATTGCTATGATCATTGG+AGG | + | chr5.1:17443574-17443593 | MS.gene72828:CDS | 35.0% | |
| GCTTTGATTACTGCTGAAAT+GGG | + | chr5.1:17442965-17442984 | MS.gene72828:CDS | 35.0% | |
| GTACTGTATTGGAATGATTC+TGG | + | chr5.1:17443840-17443859 | MS.gene72828:CDS | 35.0% | |
| TACTTCTTTCCTCTTCTGAT+TGG | + | chr5.1:17443499-17443518 | MS.gene72828:CDS | 35.0% | |
| TATAGGGGTTTAACCATTGT+TGG | + | chr5.1:17443217-17443236 | MS.gene72828:CDS | 35.0% | |
| ! | ACCTAGAGTATTTGCAACAT+GGG | + | chr5.1:17443165-17443184 | MS.gene72828:CDS | 35.0% |
| ! | AGCTTTGATTACTGCTGAAA+TGG | + | chr5.1:17442964-17442983 | MS.gene72828:CDS | 35.0% |
| ! | TACCTAGAGTATTTGCAACA+TGG | + | chr5.1:17443164-17443183 | MS.gene72828:CDS | 35.0% |
| !! | ATCTGCTTTAGGTCCTTTTT+GGG | + | chr5.1:17443030-17443049 | MS.gene72828:CDS | 35.0% |
| !! | CATCTTTCAGGTTTCATTTC+TGG | - | chr5.1:17443310-17443329 | None:intergenic | 35.0% |
| !! | CCTTTGGGAAGATTTTTCTT+TGG | - | chr5.1:17443445-17443464 | None:intergenic | 35.0% |
| !! | CTTCTCCCATTTGTTTTCAT+GGG | + | chr5.1:17443271-17443290 | MS.gene72828:CDS | 35.0% |
| !! | GACTTGTTGCTGTTTGTTTA+GGG | + | chr5.1:17443239-17443258 | MS.gene72828:CDS | 35.0% |
| !! | TTCTCCCATTTGTTTTCATG+GGG | + | chr5.1:17443272-17443291 | MS.gene72828:CDS | 35.0% |
| AACAGCAACAAGTCCAACAA+TGG | - | chr5.1:17443233-17443252 | None:intergenic | 40.0% | |
| ACAGTATCCTCAACACCAAA+AGG | - | chr5.1:17442875-17442894 | None:intergenic | 40.0% | |
| ACCATGTTCCCTGAAAATAG+TGG | + | chr5.1:17442989-17443008 | MS.gene72828:CDS | 40.0% | |
| AGATAGTAGAATCACACCAG+AGG | - | chr5.1:17443779-17443798 | None:intergenic | 40.0% | |
| CTGGTGTGATTCTACTATCT+TGG | + | chr5.1:17443779-17443798 | MS.gene72828:CDS | 40.0% | |
| GTAAGAGTCGCTACTCATTT+CGG | - | chr5.1:17443662-17443681 | None:intergenic | 40.0% | |
| GTCTCAACAAACCATCTTTC+AGG | - | chr5.1:17443322-17443341 | None:intergenic | 40.0% | |
| TCAGCAGTAATCAAAGCTTC+AGG | - | chr5.1:17442962-17442981 | None:intergenic | 40.0% | |
| TCAGGAATGCTCCATATGAA+CGG | - | chr5.1:17442944-17442963 | None:intergenic | 40.0% | |
| TCCTCTCCATTGACAAAATC+AGG | - | chr5.1:17444120-17444139 | None:intergenic | 40.0% | |
| TTATCTTAAGTCAGCGGTTC+CGG | + | chr5.1:17443126-17443145 | MS.gene72828:CDS | 40.0% | |
| TTGACAAAATCAGGTAGCTC+GGG | - | chr5.1:17444111-17444130 | None:intergenic | 40.0% | |
| TTTCCTCTTCTGATTGGTAC+CGG | + | chr5.1:17443505-17443524 | MS.gene72828:CDS | 40.0% | |
| ! | ACCTGATTTTGTCAATGGAG+AGG | + | chr5.1:17444116-17444135 | MS.gene72828:CDS | 40.0% |
| ! | ATCTTCTATGAGGTATCAGG+AGG | + | chr5.1:17442848-17442867 | MS.gene72828:CDS | 40.0% |
| ! | CCTAGAGTATTTGCAACATG+GGG | + | chr5.1:17443166-17443185 | MS.gene72828:CDS | 40.0% |
| ! | CTCATCTTCTATGAGGTATC+AGG | + | chr5.1:17442845-17442864 | MS.gene72828:CDS | 40.0% |
| ! | GAGCTACCTGATTTTGTCAA+TGG | + | chr5.1:17444111-17444130 | MS.gene72828:CDS | 40.0% |
| ! | GCAGCCTTGTCTCAAATTTA+TGG | + | chr5.1:17444053-17444072 | MS.gene72828:CDS | 40.0% |
| ! | GTTTGGGTTTCATCTGCTTT+AGG | + | chr5.1:17443019-17443038 | MS.gene72828:CDS | 40.0% |
| ! | TCTTATAAGCGTCGTTGCTA+TGG | + | chr5.1:17444014-17444033 | MS.gene72828:CDS | 40.0% |
| !! | ACCACTATTTTCAGGGAACA+TGG | - | chr5.1:17442993-17443012 | None:intergenic | 40.0% |
| !! | CATCTGCTTTAGGTCCTTTT+TGG | + | chr5.1:17443029-17443048 | MS.gene72828:CDS | 40.0% |
| !! | GCTTCTCCCATTTGTTTTCA+TGG | + | chr5.1:17443270-17443289 | MS.gene72828:CDS | 40.0% |
| !! | GGACTTGTTGCTGTTTGTTT+AGG | + | chr5.1:17443238-17443257 | MS.gene72828:CDS | 40.0% |
| !! | GGTCCTTTGTTAGCTTTACT+TGG | + | chr5.1:17442905-17442924 | MS.gene72828:CDS | 40.0% |
| !! | TCCTCATGTGATTTGCTCTT+GGG | - | chr5.1:17442799-17442818 | None:intergenic | 40.0% |
| !! | TCTGCTTTAGGTCCTTTTTG+GGG | + | chr5.1:17443031-17443050 | MS.gene72828:CDS | 40.0% |
| !! | TTCACCAGCAAGAGTACTTA+TGG | - | chr5.1:17443413-17443432 | None:intergenic | 40.0% |
| !! | TTCCTCATGTGATTTGCTCT+TGG | - | chr5.1:17442800-17442819 | None:intergenic | 40.0% |
| CCCCATGTTGCAAATACTCT+AGG | - | chr5.1:17443169-17443188 | None:intergenic | 45.0% | |
| CTATGATCATTGGAGGAGTG+TGG | + | chr5.1:17443581-17443600 | MS.gene72828:CDS | 45.0% | |
| GACCTCTTGGTGAAAAACTC+TGG | - | chr5.1:17443718-17443737 | None:intergenic | 45.0% | |
| GACTCCATAAGTACTCTTGC+TGG | + | chr5.1:17443406-17443425 | MS.gene72828:CDS | 45.0% | |
| GGTTGGATGAAATGGCTTAG+TGG | + | chr5.1:17443064-17443083 | MS.gene72828:CDS | 45.0% | |
| GTCACGGAACACCTCTTATA+GGG | + | chr5.1:17443740-17443759 | MS.gene72828:CDS | 45.0% | |
| TGCTTTGATCCTGGTTGTTG+TGG | + | chr5.1:17443474-17443493 | MS.gene72828:CDS | 45.0% | |
| TGGAGAGGACACTCAATCTT+TGG | + | chr5.1:17444131-17444150 | MS.gene72828:CDS | 45.0% | |
| TTCAGCAGGGTTGGATGAAA+TGG | + | chr5.1:17443056-17443075 | MS.gene72828:CDS | 45.0% | |
| ! | AGAAGTATGCCACAACAACC+AGG | - | chr5.1:17443486-17443505 | None:intergenic | 45.0% |
| ! | CTCTTACCAGCTTCTAGGAA+TGG | + | chr5.1:17443675-17443694 | MS.gene72828:CDS | 45.0% |
| ! | TGCCAGAGTTTTTCACCAAG+AGG | + | chr5.1:17443713-17443732 | MS.gene72828:CDS | 45.0% |
| !! | ATGTGATTTGCTCTTGGGGA+AGG | - | chr5.1:17442794-17442813 | None:intergenic | 45.0% |
| !! | CCTCATGTGATTTGCTCTTG+GGG | - | chr5.1:17442798-17442817 | None:intergenic | 45.0% |
| !! | CTGCTTTAGGTCCTTTTTGG+GGG | + | chr5.1:17443032-17443051 | MS.gene72828:CDS | 45.0% |
| !!! | GGGATTCTTTTTTCAGCCTC+TGG | + | chr5.1:17443760-17443779 | MS.gene72828:CDS | 45.0% |
| AGCGACTCTTACCAGCTTCT+AGG | + | chr5.1:17443670-17443689 | MS.gene72828:CDS | 50.0% | |
| CCCCAAGAGCAAATCACATG+AGG | + | chr5.1:17442795-17442814 | MS.gene72828:CDS | 50.0% | |
| CGTCACGGAACACCTCTTAT+AGG | + | chr5.1:17443739-17443758 | MS.gene72828:CDS | 50.0% | |
| GAGGATACTGTGAAAGCAGC+CGG | + | chr5.1:17442884-17442903 | MS.gene72828:CDS | 50.0% | |
| GCAGCTGCAATGTCGAACAT+GGG | + | chr5.1:17443625-17443644 | MS.gene72828:CDS | 50.0% | |
| TCTCAGCCATTCCTAGAAGC+TGG | - | chr5.1:17443684-17443703 | None:intergenic | 50.0% | |
| TGCAGCTGCAATGTCGAACA+TGG | + | chr5.1:17443624-17443643 | MS.gene72828:CDS | 50.0% | |
| TTCACCAAGAGGTCTCGTCA+CGG | + | chr5.1:17443724-17443743 | MS.gene72828:CDS | 50.0% | |
| ! | AGCTTCTAGGAATGGCTGAG+AGG | + | chr5.1:17443683-17443702 | MS.gene72828:CDS | 50.0% |
| ! | CTTCTAGGAATGGCTGAGAG+GGG | + | chr5.1:17443685-17443704 | MS.gene72828:CDS | 50.0% |
| ! | GCTTCTAGGAATGGCTGAGA+GGG | + | chr5.1:17443684-17443703 | MS.gene72828:CDS | 50.0% |
| ! | TTGGAGGAGTGTGGTTGAGA+TGG | + | chr5.1:17443590-17443609 | MS.gene72828:CDS | 50.0% |
| !! | CCTTTTTGGGGGTTTCAGCA+GGG | + | chr5.1:17443043-17443062 | MS.gene72828:CDS | 50.0% |
| !! | GAGGTATCAGGAGGACCTTT+TGG | + | chr5.1:17442857-17442876 | MS.gene72828:CDS | 50.0% |
| !! | TCCTTTTTGGGGGTTTCAGC+AGG | + | chr5.1:17443042-17443061 | MS.gene72828:CDS | 50.0% |
| !!! | AGGAGGACCTTTTGGTGTTG+AGG | + | chr5.1:17442865-17442884 | MS.gene72828:CDS | 50.0% |
| AGCGTCGTTGCTATGGCGAT+TGG | + | chr5.1:17444021-17444040 | MS.gene72828:CDS | 55.0% | |
| CCCTGCTGAAACCCCCAAAA+AGG | - | chr5.1:17443046-17443065 | None:intergenic | 55.0% | |
| GTTCCGCCTGGTACCTTGTA+TGG | - | chr5.1:17443916-17443935 | None:intergenic | 55.0% | |
| TCAAACACCCCAACGCACCT+CGG | + | chr5.1:17443890-17443909 | MS.gene72828:CDS | 55.0% | |
| TCTTAAGTCAGCGGTTCCGG+CGG | + | chr5.1:17443129-17443148 | MS.gene72828:CDS | 55.0% | |
| TGTTCCGTGACGAGACCTCT+TGG | - | chr5.1:17443731-17443750 | None:intergenic | 55.0% | |
| TTGTATGGCCGAGGTGCGTT+GGG | - | chr5.1:17443901-17443920 | None:intergenic | 55.0% | |
| TTTGGGGGTTTCAGCAGGGT+TGG | + | chr5.1:17443047-17443066 | MS.gene72828:CDS | 55.0% | |
| ! | GAGGAGTGTGGTTGAGATGG+TGG | + | chr5.1:17443593-17443612 | MS.gene72828:CDS | 55.0% |
| ! | GCACCGGTACCAATCAGAAG+AGG | - | chr5.1:17443511-17443530 | None:intergenic | 55.0% |
| AGGTACCAGGCGGAACGACT+GGG | + | chr5.1:17443920-17443939 | MS.gene72828:CDS | 60.0% | |
| CAACGCACCTCGGCCATACA+AGG | + | chr5.1:17443900-17443919 | MS.gene72828:CDS | 60.0% | |
| CCTGGTACCTTGTATGGCCG+AGG | - | chr5.1:17443910-17443929 | None:intergenic | 60.0% | |
| CTTGTATGGCCGAGGTGCGT+TGG | - | chr5.1:17443902-17443921 | None:intergenic | 60.0% | |
| GCGCTGAACAGGAACAGCAC+CGG | - | chr5.1:17443527-17443546 | None:intergenic | 60.0% | |
| GGTAAACCACCACCTACCGC+CGG | - | chr5.1:17443148-17443167 | None:intergenic | 60.0% | |
| TGTATGGCCGAGGTGCGTTG+GGG | - | chr5.1:17443900-17443919 | None:intergenic | 60.0% | |
| TTCCTGTTCAGCGCGAGCTG+TGG | + | chr5.1:17443533-17443552 | MS.gene72828:CDS | 60.0% | |
| ! | AAGGTACCAGGCGGAACGAC+TGG | + | chr5.1:17443919-17443938 | MS.gene72828:CDS | 60.0% |
| ! | CCTCGGCCATACAAGGTACC+AGG | + | chr5.1:17443907-17443926 | MS.gene72828:CDS | 60.0% |
| ! | CGGCCATACAAGGTACCAGG+CGG | + | chr5.1:17443910-17443929 | MS.gene72828:CDS | 60.0% |
| AAGTCAGCGGTTCCGGCGGT+AGG | + | chr5.1:17443133-17443152 | MS.gene72828:CDS | 65.0% | |
| ATTGCCCCAGTCGTTCCGCC+TGG | - | chr5.1:17443928-17443947 | None:intergenic | 65.0% | |
| GGTACCAGGCGGAACGACTG+GGG | + | chr5.1:17443921-17443940 | MS.gene72828:CDS | 65.0% | |
| GTCCACAGCTCGCGCTGAAC+AGG | - | chr5.1:17443538-17443557 | None:intergenic | 65.0% | |
| ! | AGCGCGAGCTGTGGACTGAC+GGG | + | chr5.1:17443542-17443561 | MS.gene72828:CDS | 65.0% |
| ! | CAGCGCGAGCTGTGGACTGA+CGG | + | chr5.1:17443541-17443560 | MS.gene72828:CDS | 65.0% |
| TCAGCGGTTCCGGCGGTAGG+TGG | + | chr5.1:17443136-17443155 | MS.gene72828:CDS | 70.0% | |
| GCGGTTCCGGCGGTAGGTGG+TGG | + | chr5.1:17443139-17443158 | MS.gene72828:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17442788 | 17444161 | 17442788 | ID=MS.gene72828 |
| chr5.1 | mRNA | 17442788 | 17444161 | 17442788 | ID=MS.gene72828.t1;Parent=MS.gene72828 |
| chr5.1 | exon | 17442788 | 17444161 | 17442788 | ID=MS.gene72828.t1.exon1;Parent=MS.gene72828.t1 |
| chr5.1 | CDS | 17442788 | 17444161 | 17442788 | ID=cds.MS.gene72828.t1;Parent=MS.gene72828.t1 |
| Gene Sequence |
| Protein sequence |
