Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84987.t1 | XP_003612596.2 | 98 | 491 | 10 | 0 | 1 | 491 | 1 | 491 | 3.90E-280 | 973.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84987.t1 | Q9C6S5 | 72.8 | 471 | 122 | 4 | 14 | 479 | 12 | 481 | 8.2e-202 | 704.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84987.t1 | G7K6T4 | 98.0 | 491 | 10 | 0 | 1 | 491 | 1 | 491 | 2.8e-280 | 973.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050654 | MS.gene84987 | 0.804644 | 1.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84987 | MS.gene070082 | PPI |
| MS.gene52398 | MS.gene84987 | PPI |
| MS.gene84987 | MS.gene024967 | PPI |
| MS.gene028082 | MS.gene84987 | PPI |
| MS.gene00289 | MS.gene84987 | PPI |
| MS.gene84987 | MS.gene039946 | PPI |
| MS.gene68906 | MS.gene84987 | PPI |
| MS.gene92363 | MS.gene84987 | PPI |
| MS.gene046947 | MS.gene84987 | PPI |
| MS.gene22262 | MS.gene84987 | PPI |
| MS.gene72828 | MS.gene84987 | PPI |
| MS.gene40531 | MS.gene84987 | PPI |
| MS.gene84987 | MS.gene019112 | PPI |
| MS.gene004548 | MS.gene84987 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84987.t1 | MTR_5g026780 | 97.963 | 491 | 10 | 0 | 1 | 491 | 1 | 491 | 0.0 | 978 |
| MS.gene84987.t1 | MTR_5g026780 | 98.105 | 475 | 9 | 0 | 17 | 491 | 1 | 475 | 0.0 | 945 |
| MS.gene84987.t1 | MTR_0031s0060 | 71.717 | 495 | 99 | 5 | 10 | 490 | 92 | 559 | 0.0 | 710 |
| MS.gene84987.t1 | MTR_1g112950 | 73.661 | 448 | 115 | 2 | 34 | 479 | 12 | 458 | 0.0 | 674 |
| MS.gene84987.t1 | MTR_5g005160 | 56.250 | 448 | 193 | 3 | 40 | 486 | 4 | 449 | 5.35e-172 | 493 |
| MS.gene84987.t1 | MTR_8g085630 | 48.299 | 441 | 226 | 2 | 34 | 472 | 28 | 468 | 5.90e-151 | 439 |
| MS.gene84987.t1 | MTR_5g064750 | 47.392 | 441 | 230 | 2 | 41 | 479 | 20 | 460 | 3.37e-137 | 404 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84987.t1 | AT1G31830 | 72.669 | 472 | 123 | 4 | 14 | 480 | 12 | 482 | 0.0 | 709 |
| MS.gene84987.t1 | AT1G31830 | 73.233 | 467 | 119 | 4 | 19 | 480 | 1 | 466 | 0.0 | 705 |
| MS.gene84987.t1 | AT5G05630 | 66.390 | 482 | 155 | 2 | 2 | 482 | 15 | 490 | 0.0 | 673 |
| MS.gene84987.t1 | AT1G31820 | 67.770 | 453 | 143 | 2 | 41 | 491 | 31 | 482 | 0.0 | 617 |
| MS.gene84987.t1 | AT3G19553 | 56.223 | 466 | 197 | 5 | 26 | 488 | 2 | 463 | 4.52e-179 | 511 |
| MS.gene84987.t1 | AT3G13620 | 47.158 | 475 | 244 | 7 | 17 | 487 | 1 | 472 | 2.02e-141 | 415 |
Find 116 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTTCAGGTTTAATTTC+TGG | 0.135767 | 5.2:-17750403 | None:intergenic |
| GCAGCCTTGTCTCAAATTTA+TGG | 0.146769 | 5.2:+17751149 | MS.gene84987:CDS |
| GTCTCAACAAACCATCTTTC+AGG | 0.214862 | 5.2:-17750415 | None:intergenic |
| AATTCCAATCAACGTCATTT+AGG | 0.226372 | 5.2:-17750441 | None:intergenic |
| TCTTACTTATTTGAACTATA+GGG | 0.250588 | 5.2:+17750297 | MS.gene84987:CDS |
| CTCATCTTCTATGAGGTATC+AGG | 0.259870 | 5.2:+17749941 | MS.gene84987:CDS |
| GTTTGGGTTTCGTCTGCTTT+AGG | 0.262773 | 5.2:+17750115 | MS.gene84987:CDS |
| TCCTCATGTGATTTGCTCTT+GGG | 0.281304 | 5.2:-17749892 | None:intergenic |
| GAGAATTTCTTGTACTGTAT+TGG | 0.285105 | 5.2:+17750925 | MS.gene84987:CDS |
| CGTCACGGAACACCTCTTAT+AGG | 0.288096 | 5.2:+17750835 | MS.gene84987:CDS |
| GTACTGTATTGGAATGATTC+TGG | 0.296739 | 5.2:+17750936 | MS.gene84987:CDS |
| AAAATAGTGGTTATGTTGTT+TGG | 0.305948 | 5.2:+17750098 | MS.gene84987:CDS |
| TATATTTGAATACGCTGTTT+TGG | 0.313685 | 5.2:+17750464 | MS.gene84987:CDS |
| CTGGTGTGATTCTACTATCT+TGG | 0.316221 | 5.2:+17750875 | MS.gene84987:CDS |
| TTCCTCATGTGATTTGCTCT+TGG | 0.325329 | 5.2:-17749893 | None:intergenic |
| TTCACCAGCAAGAGTACTTA+TGG | 0.329309 | 5.2:-17750506 | None:intergenic |
| GATTGGTACCGGTGCTGTTC+CGG | 0.333898 | 5.2:+17750612 | MS.gene84987:CDS |
| GGACTTGTTGCTGTTTGTTT+AGG | 0.336950 | 5.2:+17750334 | MS.gene84987:CDS |
| TCTGAAATTGCTATGATCAT+TGG | 0.341902 | 5.2:+17750667 | MS.gene84987:CDS |
| TACTTCTTTCCTCTTCTGAT+TGG | 0.345365 | 5.2:+17750595 | MS.gene84987:CDS |
| TTCTTACTTATTTGAACTAT+AGG | 0.348712 | 5.2:+17750296 | MS.gene84987:CDS |
| TTATCTTAAGTCAGCGGTTC+CGG | 0.348725 | 5.2:+17750222 | MS.gene84987:CDS |
| TCCTCTCCATTGACAAAATC+AGG | 0.367559 | 5.2:-17751213 | None:intergenic |
| AGCTTTGATTACTGCTGAAA+TGG | 0.368117 | 5.2:+17750060 | MS.gene84987:CDS |
| TTCAGCAGGGTTGGATGAAA+TGG | 0.368473 | 5.2:+17750152 | MS.gene84987:CDS |
| GTCACGGAACACCTCTTATA+GGG | 0.371487 | 5.2:+17750836 | MS.gene84987:CDS |
| CTTGTATGGCCGAGGTGCGT+TGG | 0.376993 | 5.2:-17750995 | None:intergenic |
| TTGTATGGCCGAGGTGCGTT+GGG | 0.377235 | 5.2:-17750994 | None:intergenic |
| GTGGTTGAGATGGTGGCTTC+AGG | 0.380033 | 5.2:+17750696 | MS.gene84987:CDS |
| GGTCCTTTGTTAGCTTTGCT+TGG | 0.380795 | 5.2:+17750001 | MS.gene84987:CDS |
| CAAACCTAAATGACGTTGAT+TGG | 0.381343 | 5.2:+17750437 | MS.gene84987:CDS |
| GAGGTATCAGGAGGACCTTT+TGG | 0.385759 | 5.2:+17749953 | MS.gene84987:CDS |
| TGGAGAGGACTCTCAATCTT+TGG | 0.386451 | 5.2:+17751227 | MS.gene84987:CDS |
| TCAGCAGTAATCAAAGCTTC+AGG | 0.389410 | 5.2:-17750055 | None:intergenic |
| TATAGGGGTTTAACCATTGT+TGG | 0.391261 | 5.2:+17750313 | MS.gene84987:CDS |
| GTCCACAACTCGCGCTGAAC+CGG | 0.400817 | 5.2:-17750631 | None:intergenic |
| AAATAGTGGTTATGTTGTTT+GGG | 0.402210 | 5.2:+17750099 | MS.gene84987:CDS |
| GACTCCATAAGTACTCTTGC+TGG | 0.422201 | 5.2:+17750502 | MS.gene84987:CDS |
| CAAAGCATAAAACAAACCTT+TGG | 0.423701 | 5.2:-17750554 | None:intergenic |
| GTTCCGCCTGGTACCTTGTA+TGG | 0.428982 | 5.2:-17751009 | None:intergenic |
| GTAAGAGTCACTACTCATTT+CGG | 0.430819 | 5.2:-17750755 | None:intergenic |
| CACGTACTCGCTCCCGGTCC+CGG | 0.431626 | 5.2:-17749849 | None:intergenic |
| GGTTCTAGTGCAATGGCAAT+GGG | 0.433376 | 5.2:+17749818 | MS.gene84987:CDS |
| AAAGCATAAAACAAACCTTT+GGG | 0.444037 | 5.2:-17750553 | None:intergenic |
| ATGTGATTTGCTCTTGGGGA+AGG | 0.449749 | 5.2:-17749887 | None:intergenic |
| GCGGTTCCGGCTGTAGGTGG+TGG | 0.458172 | 5.2:+17750235 | MS.gene84987:CDS |
| TCAGGAACACTCCATATAAA+CGG | 0.461275 | 5.2:-17750037 | None:intergenic |
| CACTTATAAGAAATACTTTG+AGG | 0.462634 | 5.2:-17751098 | None:intergenic |
| TTTCCTCTTCTGATTGGTAC+CGG | 0.464126 | 5.2:+17750601 | MS.gene84987:CDS |
| CAGAAATTAAACCTGAAAGA+TGG | 0.464224 | 5.2:+17750404 | MS.gene84987:CDS |
| GAGGAGTGTGGTTGAGATGG+TGG | 0.475640 | 5.2:+17750689 | MS.gene84987:CDS |
| TTAGCTGGGTGCAGAAATTG+AGG | 0.477572 | 5.2:+17749771 | MS.gene84987:intron |
| TGCTTTGATCCTGGTTGTTG+TGG | 0.480119 | 5.2:+17750570 | MS.gene84987:CDS |
| TCTTATAAGTGTCGTTGCTA+TGG | 0.482598 | 5.2:+17751110 | MS.gene84987:CDS |
| ACAGTATCCTCAACACCAAA+AGG | 0.485295 | 5.2:-17749968 | None:intergenic |
| ATTGCTCCGGTCGTTCCGCC+TGG | 0.488878 | 5.2:-17751021 | None:intergenic |
| CCTCATGTGATTTGCTCTTG+GGG | 0.493232 | 5.2:-17749891 | None:intergenic |
| AAGGTACCAGGCGGAACGAC+CGG | 0.497678 | 5.2:+17751015 | MS.gene84987:CDS |
| ACCTAGAGTATTTGCAACAT+GGG | 0.501565 | 5.2:+17750261 | MS.gene84987:CDS |
| AGGTTCTAGTGCAATGGCAA+TGG | 0.503613 | 5.2:+17749817 | MS.gene84987:CDS |
| CTTACTTATTTGAACTATAG+GGG | 0.504401 | 5.2:+17750298 | MS.gene84987:CDS |
| TTCCGGTTCAGCGCGAGTTG+TGG | 0.506009 | 5.2:+17750629 | MS.gene84987:CDS |
| CAACGCACCTCGGCCATACA+AGG | 0.507655 | 5.2:+17750996 | MS.gene84987:CDS |
| AGATAATCAAGAAATAGAAC+AGG | 0.509628 | 5.2:-17750205 | None:intergenic |
| GGTTGGATGAAATGGCTTAG+TGG | 0.514133 | 5.2:+17750160 | MS.gene84987:CDS |
| CCTGGTACCTTGTATGGCCG+AGG | 0.514730 | 5.2:-17751003 | None:intergenic |
| AAGTCAGCGGTTCCGGCTGT+AGG | 0.515752 | 5.2:+17750229 | MS.gene84987:CDS |
| TACGGTCACGTACTCGCTCC+CGG | 0.516080 | 5.2:-17749855 | None:intergenic |
| TGTTCCGTGACGAGACCTCT+TGG | 0.516304 | 5.2:-17750824 | None:intergenic |
| ACTTATAAGAAATACTTTGA+GGG | 0.524269 | 5.2:-17751097 | None:intergenic |
| GAGGATACTGTAAAAGCAGC+AGG | 0.529088 | 5.2:+17749980 | MS.gene84987:CDS |
| GCTTTGATTACTGCTGAAAT+GGG | 0.532215 | 5.2:+17750061 | MS.gene84987:CDS |
| AAAACCCCATGAAAACAAAT+GGG | 0.535277 | 5.2:-17750372 | None:intergenic |
| TTGACAAAATCAGGTAGCTC+GGG | 0.536795 | 5.2:-17751204 | None:intergenic |
| TGCAGCTGCAATGTCAAACA+TGG | 0.540036 | 5.2:+17750720 | MS.gene84987:CDS |
| TGGGGAAGGCATTTCACCTA+CGG | 0.540451 | 5.2:-17749873 | None:intergenic |
| ATTGACAAAATCAGGTAGCT+CGG | 0.544293 | 5.2:-17751205 | None:intergenic |
| CCTCGGCCATACAAGGTACC+AGG | 0.545909 | 5.2:+17751003 | MS.gene84987:CDS |
| ACCACACAGATCAAAATTGT+AGG | 0.550771 | 5.2:-17751060 | None:intergenic |
| GAAATTGCTATGATCATTGG+AGG | 0.553545 | 5.2:+17750670 | MS.gene84987:CDS |
| TTGGAGGAGTGTGGTTGAGA+TGG | 0.554137 | 5.2:+17750686 | MS.gene84987:CDS |
| AGTGTCGTTGCTATGGCGAT+TGG | 0.556912 | 5.2:+17751117 | MS.gene84987:CDS |
| AGCGCGAGTTGTGGACTGAC+GGG | 0.557681 | 5.2:+17750638 | MS.gene84987:CDS |
| TCTCAGCCATTCCTAAAAGC+TGG | 0.558137 | 5.2:-17750777 | None:intergenic |
| TACCTAGAGTATTTGCAACA+TGG | 0.559602 | 5.2:+17750260 | MS.gene84987:CDS |
| ACAATGTTCCCTGAAAATAG+TGG | 0.565750 | 5.2:+17750085 | MS.gene84987:CDS |
| CCCCATGTTGCAAATACTCT+AGG | 0.566170 | 5.2:-17750262 | None:intergenic |
| GATGCACATAATAATTGCTC+CGG | 0.566195 | 5.2:-17751034 | None:intergenic |
| CAGCGCGAGTTGTGGACTGA+CGG | 0.575381 | 5.2:+17750637 | MS.gene84987:CDS |
| TTCTCCATAAATTTGAGACA+AGG | 0.576827 | 5.2:-17751153 | None:intergenic |
| GCGCTGAACCGGAACAGCAC+CGG | 0.578815 | 5.2:-17750620 | None:intergenic |
| ACACAGATCAAAATTGTAGG+AGG | 0.578866 | 5.2:-17751057 | None:intergenic |
| TTCTAGTGCAATGGCAATGG+GGG | 0.581175 | 5.2:+17749820 | MS.gene84987:CDS |
| TCAGCGGTTCCGGCTGTAGG+TGG | 0.588001 | 5.2:+17750232 | MS.gene84987:CDS |
| ACAACAAGGTTCTAGTGCAA+TGG | 0.605934 | 5.2:+17749811 | MS.gene84987:CDS |
| TCTTGATTATCTTAAGTCAG+CGG | 0.608921 | 5.2:+17750216 | MS.gene84987:CDS |
| GGTAAACCACCACCTACAGC+CGG | 0.614552 | 5.2:-17750241 | None:intergenic |
| CCTAGAGTATTTGCAACATG+GGG | 0.617913 | 5.2:+17750262 | MS.gene84987:CDS |
| TATAAGAAATACTTTGAGGG+AGG | 0.618626 | 5.2:-17751094 | None:intergenic |
| AGAAGTATGCCACAACAACC+AGG | 0.618863 | 5.2:-17750579 | None:intergenic |
| TCAAACACCCCAACGCACCT+CGG | 0.622823 | 5.2:+17750986 | MS.gene84987:CDS |
| AACAGCAACAAGTCCAACAA+TGG | 0.629856 | 5.2:-17750326 | None:intergenic |
| TTCACCAAGAGGTCTCGTCA+CGG | 0.632873 | 5.2:+17750820 | MS.gene84987:CDS |
| ATCTTCTATGAGGTATCAGG+AGG | 0.637496 | 5.2:+17749944 | MS.gene84987:CDS |
| CACAGATCAAAATTGTAGGA+GGG | 0.640354 | 5.2:-17751056 | None:intergenic |
| CCCCAAGAGCAAATCACATG+AGG | 0.644096 | 5.2:+17749891 | MS.gene84987:CDS |
| AATCCAAGCAAAGCTAACAA+AGG | 0.649008 | 5.2:-17750004 | None:intergenic |
| GCACCGGTACCAATCAGAAG+AGG | 0.649774 | 5.2:-17750604 | None:intergenic |
| CTATGATCATTGGAGGAGTG+TGG | 0.665613 | 5.2:+17750677 | MS.gene84987:CDS |
| GCAGCTGCAATGTCAAACAT+GGG | 0.667782 | 5.2:+17750721 | MS.gene84987:CDS |
| GTTCTAGTGCAATGGCAATG+GGG | 0.681571 | 5.2:+17749819 | MS.gene84987:CDS |
| TGTATGGCCGAGGTGCGTTG+GGG | 0.683744 | 5.2:-17750993 | None:intergenic |
| GGGAGCGAGTACGTGACCGT+AGG | 0.708466 | 5.2:+17749857 | MS.gene84987:CDS |
| ACAGCATATAATAGACAACA+AGG | 0.710785 | 5.2:+17749797 | MS.gene84987:CDS |
| AGATAGTAGAATCACACCAG+AGG | 0.717929 | 5.2:-17750872 | None:intergenic |
| CGGCCATACAAGGTACCAGG+CGG | 0.740851 | 5.2:+17751006 | MS.gene84987:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTGAATTTAATAACAAAA+TGG | - | chr5.2:17749629-17749648 | None:intergenic | 15.0% |
| !!! | ATTTTTATTCTTTTCCAATT+TGG | + | chr5.2:17749307-17749326 | MS.gene84987:intron | 15.0% |
| !!! | CATTTTGTTATTAAATTCAA+TGG | + | chr5.2:17749627-17749646 | MS.gene84987:intron | 15.0% |
| !!! | TTTTTATTCTTTTCCAATTT+GGG | + | chr5.2:17749308-17749327 | MS.gene84987:intron | 15.0% |
| !! | ACTTATAAGAAATACTTTGA+GGG | - | chr5.2:17751100-17751119 | None:intergenic | 20.0% |
| !! | ATCAAAATAGGTATGTATAT+AGG | - | chr5.2:17749704-17749723 | None:intergenic | 20.0% |
| !! | TATGGTTTCTGTTAATTAAT+GGG | + | chr5.2:17749431-17749450 | MS.gene84987:intron | 20.0% |
| !! | TCTTACTTATTTGAACTATA+GGG | + | chr5.2:17750297-17750316 | MS.gene84987:CDS | 20.0% |
| !! | TTCTTACTTATTTGAACTAT+AGG | + | chr5.2:17750296-17750315 | MS.gene84987:CDS | 20.0% |
| !!! | CTCAAATTCAATTCTTTTTT+TGG | + | chr5.2:17749657-17749676 | MS.gene84987:intron | 20.0% |
| ! | AAAATAGTGGTTATGTTGTT+TGG | + | chr5.2:17750098-17750117 | MS.gene84987:CDS | 25.0% |
| ! | AAAGCATAAAACAAACCTTT+GGG | - | chr5.2:17750556-17750575 | None:intergenic | 25.0% |
| ! | AATTTATGGAGAAAAAGAGA+TGG | + | chr5.2:17751163-17751182 | MS.gene84987:CDS | 25.0% |
| ! | AGATAATCAAGAAATAGAAC+AGG | - | chr5.2:17750208-17750227 | None:intergenic | 25.0% |
| ! | CACTTATAAGAAATACTTTG+AGG | - | chr5.2:17751101-17751120 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAACTATAG+GGG | + | chr5.2:17750298-17750317 | MS.gene84987:CDS | 25.0% |
| ! | GCATAACATCAAATCAAAAT+AGG | - | chr5.2:17749716-17749735 | None:intergenic | 25.0% |
| ! | GTATGGTTTCTGTTAATTAA+TGG | + | chr5.2:17749430-17749449 | MS.gene84987:intron | 25.0% |
| !! | AAATAGTGGTTATGTTGTTT+GGG | + | chr5.2:17750099-17750118 | MS.gene84987:CDS | 25.0% |
| !! | ATTAAGTTGTTTATCCAACA+AGG | - | chr5.2:17749473-17749492 | None:intergenic | 25.0% |
| !! | TATATTTGAATACGCTGTTT+TGG | + | chr5.2:17750464-17750483 | MS.gene84987:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAACAA+GGG | - | chr5.2:17749472-17749491 | None:intergenic | 25.0% |
| !!! | AAGAAGTAAACTTTTTTAGC+TGG | + | chr5.2:17749756-17749775 | MS.gene84987:intron | 25.0% |
| !!! | AGAAGTAAACTTTTTTAGCT+GGG | + | chr5.2:17749757-17749776 | MS.gene84987:intron | 25.0% |
| !!! | GTTTTGGAATCTCAATTATT+GGG | + | chr5.2:17750480-17750499 | MS.gene84987:CDS | 25.0% |
| !!! | GTTTTTTACACCTTCATTTA+TGG | + | chr5.2:17749408-17749427 | MS.gene84987:intron | 25.0% |
| !!! | TGTTTTGGAATCTCAATTAT+TGG | + | chr5.2:17750479-17750498 | MS.gene84987:CDS | 25.0% |
| !!! | TTTTGGTTTTTCCGTTTATA+TGG | + | chr5.2:17750026-17750045 | MS.gene84987:CDS | 25.0% |
| AAAAACCCCATGAAAACAAA+TGG | - | chr5.2:17750376-17750395 | None:intergenic | 30.0% | |
| AAAACCCCATGAAAACAAAT+GGG | - | chr5.2:17750375-17750394 | None:intergenic | 30.0% | |
| AAGGTGTAAAAAACAGATCT+TGG | - | chr5.2:17749402-17749421 | None:intergenic | 30.0% | |
| AATTCCAATCAACGTCATTT+AGG | - | chr5.2:17750444-17750463 | None:intergenic | 30.0% | |
| ACAGCATATAATAGACAACA+AGG | + | chr5.2:17749797-17749816 | MS.gene84987:CDS | 30.0% | |
| AGAAACCATACCATAAATGA+AGG | - | chr5.2:17749421-17749440 | None:intergenic | 30.0% | |
| AGCAATATTGTAACCCAAAT+TGG | - | chr5.2:17749324-17749343 | None:intergenic | 30.0% | |
| CAAAGCATAAAACAAACCTT+TGG | - | chr5.2:17750557-17750576 | None:intergenic | 30.0% | |
| CAGAAATTAAACCTGAAAGA+TGG | + | chr5.2:17750404-17750423 | MS.gene84987:CDS | 30.0% | |
| GAAAAAAGAATCCCTATAAG+AGG | - | chr5.2:17750850-17750869 | None:intergenic | 30.0% | |
| GAGAATTTCTTGTACTGTAT+TGG | + | chr5.2:17750925-17750944 | MS.gene84987:CDS | 30.0% | |
| TAGAAGATGAGAAAAACAAG+TGG | - | chr5.2:17749932-17749951 | None:intergenic | 30.0% | |
| TCTTGATTATCTTAAGTCAG+CGG | + | chr5.2:17750216-17750235 | MS.gene84987:CDS | 30.0% | |
| TTACACCTTCATTTATGGTA+TGG | + | chr5.2:17749413-17749432 | MS.gene84987:intron | 30.0% | |
| ! | AATTAATGGGAGTTTTTCCT+TGG | + | chr5.2:17749444-17749463 | MS.gene84987:intron | 30.0% |
| ! | ACAACATAACCACTATTTTC+AGG | - | chr5.2:17750097-17750116 | None:intergenic | 30.0% |
| ! | CAACATAACCACTATTTTCA+GGG | - | chr5.2:17750096-17750115 | None:intergenic | 30.0% |
| ! | TATAAGAAATACTTTGAGGG+AGG | - | chr5.2:17751097-17751116 | None:intergenic | 30.0% |
| ! | TCTGAAATTGCTATGATCAT+TGG | + | chr5.2:17750667-17750686 | MS.gene84987:CDS | 30.0% |
| ! | TGTTTTTCTCATCTTCTATG+AGG | + | chr5.2:17749934-17749953 | MS.gene84987:CDS | 30.0% |
| ! | TTCTCCATAAATTTGAGACA+AGG | - | chr5.2:17751156-17751175 | None:intergenic | 30.0% |
| !! | CATCTTTCAGGTTTAATTTC+TGG | - | chr5.2:17750406-17750425 | None:intergenic | 30.0% |
| !!! | TTTGTTTTATGCTTTGATCC+TGG | + | chr5.2:17750561-17750580 | MS.gene84987:CDS | 30.0% |
| AAGTTGAACAAAATCCAAGC+TGG | + | chr5.2:17749603-17749622 | MS.gene84987:intron | 35.0% | |
| AATCCAAGCAAAGCTAACAA+AGG | - | chr5.2:17750007-17750026 | None:intergenic | 35.0% | |
| ACAATGTTCCCTGAAAATAG+TGG | + | chr5.2:17750085-17750104 | MS.gene84987:CDS | 35.0% | |
| ACACAGATCAAAATTGTAGG+AGG | - | chr5.2:17751060-17751079 | None:intergenic | 35.0% | |
| ACCACACAGATCAAAATTGT+AGG | - | chr5.2:17751063-17751082 | None:intergenic | 35.0% | |
| ATTGACAAAATCAGGTAGCT+CGG | - | chr5.2:17751208-17751227 | None:intergenic | 35.0% | |
| CAAACCTAAATGACGTTGAT+TGG | + | chr5.2:17750437-17750456 | MS.gene84987:CDS | 35.0% | |
| CACAGATCAAAATTGTAGGA+GGG | - | chr5.2:17751059-17751078 | None:intergenic | 35.0% | |
| CCAAAGAAAAATCTTCCCAA+AGG | + | chr5.2:17750538-17750557 | MS.gene84987:CDS | 35.0% | |
| GAAATTGCTATGATCATTGG+AGG | + | chr5.2:17750670-17750689 | MS.gene84987:CDS | 35.0% | |
| GATGCACATAATAATTGCTC+CGG | - | chr5.2:17751037-17751056 | None:intergenic | 35.0% | |
| GCTTTGATTACTGCTGAAAT+GGG | + | chr5.2:17750061-17750080 | MS.gene84987:CDS | 35.0% | |
| GTAAGAGTCACTACTCATTT+CGG | - | chr5.2:17750758-17750777 | None:intergenic | 35.0% | |
| GTACTGTATTGGAATGATTC+TGG | + | chr5.2:17750936-17750955 | MS.gene84987:CDS | 35.0% | |
| TAATAACAAAATGGCCAGCT+TGG | - | chr5.2:17749620-17749639 | None:intergenic | 35.0% | |
| TACTTCTTTCCTCTTCTGAT+TGG | + | chr5.2:17750595-17750614 | MS.gene84987:CDS | 35.0% | |
| TATAGGGGTTTAACCATTGT+TGG | + | chr5.2:17750313-17750332 | MS.gene84987:CDS | 35.0% | |
| TCAGGAACACTCCATATAAA+CGG | - | chr5.2:17750040-17750059 | None:intergenic | 35.0% | |
| ! | ACCTAGAGTATTTGCAACAT+GGG | + | chr5.2:17750261-17750280 | MS.gene84987:CDS | 35.0% |
| ! | AGCTTTGATTACTGCTGAAA+TGG | + | chr5.2:17750060-17750079 | MS.gene84987:CDS | 35.0% |
| ! | TACCTAGAGTATTTGCAACA+TGG | + | chr5.2:17750260-17750279 | MS.gene84987:CDS | 35.0% |
| ! | TCTTATAAGTGTCGTTGCTA+TGG | + | chr5.2:17751110-17751129 | MS.gene84987:CDS | 35.0% |
| !! | CCTTTGGGAAGATTTTTCTT+TGG | - | chr5.2:17750541-17750560 | None:intergenic | 35.0% |
| !! | CTTCTCCCATTTGTTTTCAT+GGG | + | chr5.2:17750367-17750386 | MS.gene84987:CDS | 35.0% |
| !! | TCCTACAATTTTGATCTGTG+TGG | + | chr5.2:17751059-17751078 | MS.gene84987:CDS | 35.0% |
| !! | TTCTCCCATTTGTTTTCATG+GGG | + | chr5.2:17750368-17750387 | MS.gene84987:CDS | 35.0% |
| !!! | GTTAGCTTTGCTTGGATTTT+TGG | + | chr5.2:17750009-17750028 | MS.gene84987:CDS | 35.0% |
| AACAGCAACAAGTCCAACAA+TGG | - | chr5.2:17750329-17750348 | None:intergenic | 40.0% | |
| ACAGTATCCTCAACACCAAA+AGG | - | chr5.2:17749971-17749990 | None:intergenic | 40.0% | |
| AGATAGTAGAATCACACCAG+AGG | - | chr5.2:17750875-17750894 | None:intergenic | 40.0% | |
| CTGGTGTGATTCTACTATCT+TGG | + | chr5.2:17750875-17750894 | MS.gene84987:CDS | 40.0% | |
| GTCTCAACAAACCATCTTTC+AGG | - | chr5.2:17750418-17750437 | None:intergenic | 40.0% | |
| TCAGCAGTAATCAAAGCTTC+AGG | - | chr5.2:17750058-17750077 | None:intergenic | 40.0% | |
| TCCTCTCCATTGACAAAATC+AGG | - | chr5.2:17751216-17751235 | None:intergenic | 40.0% | |
| TTATCTTAAGTCAGCGGTTC+CGG | + | chr5.2:17750222-17750241 | MS.gene84987:CDS | 40.0% | |
| TTGACAAAATCAGGTAGCTC+GGG | - | chr5.2:17751207-17751226 | None:intergenic | 40.0% | |
| TTTCCTCTTCTGATTGGTAC+CGG | + | chr5.2:17750601-17750620 | MS.gene84987:CDS | 40.0% | |
| ! | ACAACAAGGTTCTAGTGCAA+TGG | + | chr5.2:17749811-17749830 | MS.gene84987:CDS | 40.0% |
| ! | ACCTGATTTTGTCAATGGAG+AGG | + | chr5.2:17751212-17751231 | MS.gene84987:CDS | 40.0% |
| ! | AGTGACTCTTACCAGCTTTT+AGG | + | chr5.2:17750766-17750785 | MS.gene84987:CDS | 40.0% |
| ! | ATCTTCTATGAGGTATCAGG+AGG | + | chr5.2:17749944-17749963 | MS.gene84987:CDS | 40.0% |
| ! | CCTAGAGTATTTGCAACATG+GGG | + | chr5.2:17750262-17750281 | MS.gene84987:CDS | 40.0% |
| ! | CTCATCTTCTATGAGGTATC+AGG | + | chr5.2:17749941-17749960 | MS.gene84987:CDS | 40.0% |
| ! | GAGCTACCTGATTTTGTCAA+TGG | + | chr5.2:17751207-17751226 | MS.gene84987:CDS | 40.0% |
| ! | GCAGCCTTGTCTCAAATTTA+TGG | + | chr5.2:17751149-17751168 | MS.gene84987:CDS | 40.0% |
| ! | TTTTTCCTTGGTACCCTTGT+TGG | + | chr5.2:17749456-17749475 | MS.gene84987:intron | 40.0% |
| !! | CTCTTACCAGCTTTTAGGAA+TGG | + | chr5.2:17750771-17750790 | MS.gene84987:CDS | 40.0% |
| !! | GCTTCTCCCATTTGTTTTCA+TGG | + | chr5.2:17750366-17750385 | MS.gene84987:CDS | 40.0% |
| !! | GGACTTGTTGCTGTTTGTTT+AGG | + | chr5.2:17750334-17750353 | MS.gene84987:CDS | 40.0% |
| !! | GTCTGCTTTAGGTCCTTTTT+GGG | + | chr5.2:17750126-17750145 | MS.gene84987:CDS | 40.0% |
| !! | TCCTCATGTGATTTGCTCTT+GGG | - | chr5.2:17749895-17749914 | None:intergenic | 40.0% |
| !! | TCTGCTTTAGGTCCTTTTTG+GGG | + | chr5.2:17750127-17750146 | MS.gene84987:CDS | 40.0% |
| !! | TTCACCAGCAAGAGTACTTA+TGG | - | chr5.2:17750509-17750528 | None:intergenic | 40.0% |
| !! | TTCCTCATGTGATTTGCTCT+TGG | - | chr5.2:17749896-17749915 | None:intergenic | 40.0% |
| !! | TTTATCCAACAAGGGTACCA+AGG | - | chr5.2:17749464-17749483 | None:intergenic | 40.0% |
| CCCCATGTTGCAAATACTCT+AGG | - | chr5.2:17750265-17750284 | None:intergenic | 45.0% | |
| CTATGATCATTGGAGGAGTG+TGG | + | chr5.2:17750677-17750696 | MS.gene84987:CDS | 45.0% | |
| GACCTCTTGGTGAAAAACTC+TGG | - | chr5.2:17750814-17750833 | None:intergenic | 45.0% | |
| GACTCCATAAGTACTCTTGC+TGG | + | chr5.2:17750502-17750521 | MS.gene84987:CDS | 45.0% | |
| GAGGATACTGTAAAAGCAGC+AGG | + | chr5.2:17749980-17749999 | MS.gene84987:CDS | 45.0% | |
| GCAGCTGCAATGTCAAACAT+GGG | + | chr5.2:17750721-17750740 | MS.gene84987:CDS | 45.0% | |
| GGTTGGATGAAATGGCTTAG+TGG | + | chr5.2:17750160-17750179 | MS.gene84987:CDS | 45.0% | |
| GTCACGGAACACCTCTTATA+GGG | + | chr5.2:17750836-17750855 | MS.gene84987:CDS | 45.0% | |
| GTTCTAGTGCAATGGCAATG+GGG | + | chr5.2:17749819-17749838 | MS.gene84987:CDS | 45.0% | |
| TCTCAGCCATTCCTAAAAGC+TGG | - | chr5.2:17750780-17750799 | None:intergenic | 45.0% | |
| TGCAGCTGCAATGTCAAACA+TGG | + | chr5.2:17750720-17750739 | MS.gene84987:CDS | 45.0% | |
| TGCTTTGATCCTGGTTGTTG+TGG | + | chr5.2:17750570-17750589 | MS.gene84987:CDS | 45.0% | |
| TGGAGAGGACTCTCAATCTT+TGG | + | chr5.2:17751227-17751246 | MS.gene84987:CDS | 45.0% | |
| TTAGCTGGGTGCAGAAATTG+AGG | + | chr5.2:17749771-17749790 | MS.gene84987:intron | 45.0% | |
| TTCAGCAGGGTTGGATGAAA+TGG | + | chr5.2:17750152-17750171 | MS.gene84987:CDS | 45.0% | |
| TTCTAGTGCAATGGCAATGG+GGG | + | chr5.2:17749820-17749839 | MS.gene84987:CDS | 45.0% | |
| ! | AGAAGTATGCCACAACAACC+AGG | - | chr5.2:17750582-17750601 | None:intergenic | 45.0% |
| ! | AGGTTCTAGTGCAATGGCAA+TGG | + | chr5.2:17749817-17749836 | MS.gene84987:CDS | 45.0% |
| ! | GGTTCTAGTGCAATGGCAAT+GGG | + | chr5.2:17749818-17749837 | MS.gene84987:CDS | 45.0% |
| ! | GTTTGGGTTTCGTCTGCTTT+AGG | + | chr5.2:17750115-17750134 | MS.gene84987:CDS | 45.0% |
| ! | TGCCAGAGTTTTTCACCAAG+AGG | + | chr5.2:17750809-17750828 | MS.gene84987:CDS | 45.0% |
| !! | AGCTTTTAGGAATGGCTGAG+AGG | + | chr5.2:17750779-17750798 | MS.gene84987:CDS | 45.0% |
| !! | ATGTGATTTGCTCTTGGGGA+AGG | - | chr5.2:17749890-17749909 | None:intergenic | 45.0% |
| !! | CCTCATGTGATTTGCTCTTG+GGG | - | chr5.2:17749894-17749913 | None:intergenic | 45.0% |
| !! | CGTCTGCTTTAGGTCCTTTT+TGG | + | chr5.2:17750125-17750144 | MS.gene84987:CDS | 45.0% |
| !! | CTGCTTTAGGTCCTTTTTGG+GGG | + | chr5.2:17750128-17750147 | MS.gene84987:CDS | 45.0% |
| !! | CTTTTAGGAATGGCTGAGAG+GGG | + | chr5.2:17750781-17750800 | MS.gene84987:CDS | 45.0% |
| !! | GCTTTTAGGAATGGCTGAGA+GGG | + | chr5.2:17750780-17750799 | MS.gene84987:CDS | 45.0% |
| !! | GGTCCTTTGTTAGCTTTGCT+TGG | + | chr5.2:17750001-17750020 | MS.gene84987:CDS | 45.0% |
| !!! | GGGATTCTTTTTTCAGCCTC+TGG | + | chr5.2:17750856-17750875 | MS.gene84987:CDS | 45.0% |
| CCCCAAGAGCAAATCACATG+AGG | + | chr5.2:17749891-17749910 | MS.gene84987:CDS | 50.0% | |
| CGTCACGGAACACCTCTTAT+AGG | + | chr5.2:17750835-17750854 | MS.gene84987:CDS | 50.0% | |
| TTCACCAAGAGGTCTCGTCA+CGG | + | chr5.2:17750820-17750839 | MS.gene84987:CDS | 50.0% | |
| ! | AGTGTCGTTGCTATGGCGAT+TGG | + | chr5.2:17751117-17751136 | MS.gene84987:CDS | 50.0% |
| ! | TTGGAGGAGTGTGGTTGAGA+TGG | + | chr5.2:17750686-17750705 | MS.gene84987:CDS | 50.0% |
| !! | CCTTTTTGGGGGTTTCAGCA+GGG | + | chr5.2:17750139-17750158 | MS.gene84987:CDS | 50.0% |
| !! | GAGGTATCAGGAGGACCTTT+TGG | + | chr5.2:17749953-17749972 | MS.gene84987:CDS | 50.0% |
| !! | TCCTTTTTGGGGGTTTCAGC+AGG | + | chr5.2:17750138-17750157 | MS.gene84987:CDS | 50.0% |
| !! | TGGGGAAGGCATTTCACCTA+CGG | - | chr5.2:17749876-17749895 | None:intergenic | 50.0% |
| !!! | AGGAGGACCTTTTGGTGTTG+AGG | + | chr5.2:17749961-17749980 | MS.gene84987:CDS | 50.0% |
| ATGGCAATGGGGGAGTTCAC+CGG | + | chr5.2:17749830-17749849 | MS.gene84987:CDS | 55.0% | |
| CCCTGCTGAAACCCCCAAAA+AGG | - | chr5.2:17750142-17750161 | None:intergenic | 55.0% | |
| GGTAAACCACCACCTACAGC+CGG | - | chr5.2:17750244-17750263 | None:intergenic | 55.0% | |
| GTTCCGCCTGGTACCTTGTA+TGG | - | chr5.2:17751012-17751031 | None:intergenic | 55.0% | |
| TCAAACACCCCAACGCACCT+CGG | + | chr5.2:17750986-17751005 | MS.gene84987:CDS | 55.0% | |
| TGTTCCGTGACGAGACCTCT+TGG | - | chr5.2:17750827-17750846 | None:intergenic | 55.0% | |
| TTGTATGGCCGAGGTGCGTT+GGG | - | chr5.2:17750997-17751016 | None:intergenic | 55.0% | |
| TTTGGGGGTTTCAGCAGGGT+TGG | + | chr5.2:17750143-17750162 | MS.gene84987:CDS | 55.0% | |
| ! | GAGGAGTGTGGTTGAGATGG+TGG | + | chr5.2:17750689-17750708 | MS.gene84987:CDS | 55.0% |
| ! | GCACCGGTACCAATCAGAAG+AGG | - | chr5.2:17750607-17750626 | None:intergenic | 55.0% |
| ! | GTGGTTGAGATGGTGGCTTC+AGG | + | chr5.2:17750696-17750715 | MS.gene84987:CDS | 55.0% |
| !! | GATTGGTACCGGTGCTGTTC+CGG | + | chr5.2:17750612-17750631 | MS.gene84987:CDS | 55.0% |
| AAGTCAGCGGTTCCGGCTGT+AGG | + | chr5.2:17750229-17750248 | MS.gene84987:CDS | 60.0% | |
| CAACGCACCTCGGCCATACA+AGG | + | chr5.2:17750996-17751015 | MS.gene84987:CDS | 60.0% | |
| CCTGGTACCTTGTATGGCCG+AGG | - | chr5.2:17751006-17751025 | None:intergenic | 60.0% | |
| CTTGTATGGCCGAGGTGCGT+TGG | - | chr5.2:17750998-17751017 | None:intergenic | 60.0% | |
| GTCCACAACTCGCGCTGAAC+CGG | - | chr5.2:17750634-17750653 | None:intergenic | 60.0% | |
| TACGGTCACGTACTCGCTCC+CGG | - | chr5.2:17749858-17749877 | None:intergenic | 60.0% | |
| TGGCAATGGGGGAGTTCACC+GGG | + | chr5.2:17749831-17749850 | MS.gene84987:CDS | 60.0% | |
| TGTATGGCCGAGGTGCGTTG+GGG | - | chr5.2:17750996-17751015 | None:intergenic | 60.0% | |
| TTCCGGTTCAGCGCGAGTTG+TGG | + | chr5.2:17750629-17750648 | MS.gene84987:CDS | 60.0% | |
| ! | AAGGTACCAGGCGGAACGAC+CGG | + | chr5.2:17751015-17751034 | MS.gene84987:CDS | 60.0% |
| ! | AGCGCGAGTTGTGGACTGAC+GGG | + | chr5.2:17750638-17750657 | MS.gene84987:CDS | 60.0% |
| ! | CAGCGCGAGTTGTGGACTGA+CGG | + | chr5.2:17750637-17750656 | MS.gene84987:CDS | 60.0% |
| ! | CCTCGGCCATACAAGGTACC+AGG | + | chr5.2:17751003-17751022 | MS.gene84987:CDS | 60.0% |
| ! | CGGCCATACAAGGTACCAGG+CGG | + | chr5.2:17751006-17751025 | MS.gene84987:CDS | 60.0% |
| ATGGGGGAGTTCACCGGGAC+CGG | + | chr5.2:17749836-17749855 | MS.gene84987:CDS | 65.0% | |
| ATTGCTCCGGTCGTTCCGCC+TGG | - | chr5.2:17751024-17751043 | None:intergenic | 65.0% | |
| GCGCTGAACCGGAACAGCAC+CGG | - | chr5.2:17750623-17750642 | None:intergenic | 65.0% | |
| GGGAGCGAGTACGTGACCGT+AGG | + | chr5.2:17749857-17749876 | MS.gene84987:CDS | 65.0% | |
| TCAGCGGTTCCGGCTGTAGG+TGG | + | chr5.2:17750232-17750251 | MS.gene84987:CDS | 65.0% | |
| CACGTACTCGCTCCCGGTCC+CGG | - | chr5.2:17749852-17749871 | None:intergenic | 70.0% | |
| GCGGTTCCGGCTGTAGGTGG+TGG | + | chr5.2:17750235-17750254 | MS.gene84987:CDS | 70.0% | |
| TGGGGGAGTTCACCGGGACC+GGG | + | chr5.2:17749837-17749856 | MS.gene84987:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 17749279 | 17751257 | 17749279 | ID=MS.gene84987 |
| chr5.2 | mRNA | 17749279 | 17751257 | 17749279 | ID=MS.gene84987.t1;Parent=MS.gene84987 |
| chr5.2 | exon | 17749279 | 17749281 | 17749279 | ID=MS.gene84987.t1.exon1;Parent=MS.gene84987.t1 |
| chr5.2 | CDS | 17749279 | 17749281 | 17749279 | ID=cds.MS.gene84987.t1;Parent=MS.gene84987.t1 |
| chr5.2 | exon | 17749785 | 17751257 | 17749785 | ID=MS.gene84987.t1.exon2;Parent=MS.gene84987.t1 |
| chr5.2 | CDS | 17749785 | 17751257 | 17749785 | ID=cds.MS.gene84987.t1;Parent=MS.gene84987.t1 |
| Gene Sequence |
| Protein sequence |
