Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070082.t1 | XP_003612596.2 | 98 | 490 | 10 | 0 | 1 | 490 | 2 | 491 | 6.70E-280 | 972.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070082.t1 | Q9C6S5 | 73.0 | 471 | 121 | 4 | 13 | 478 | 12 | 481 | 2.2e-202 | 706.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070082.t1 | G7K6T4 | 98.0 | 490 | 10 | 0 | 1 | 490 | 2 | 491 | 4.8e-280 | 972.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84987 | MS.gene070082 | PPI |
| MS.gene046947 | MS.gene070082 | PPI |
| MS.gene024967 | MS.gene070082 | PPI |
| MS.gene070082 | MS.gene039946 | PPI |
| MS.gene22262 | MS.gene070082 | PPI |
| MS.gene019112 | MS.gene070082 | PPI |
| MS.gene92363 | MS.gene070082 | PPI |
| MS.gene72828 | MS.gene070082 | PPI |
| MS.gene40531 | MS.gene070082 | PPI |
| MS.gene004548 | MS.gene070082 | PPI |
| MS.gene52398 | MS.gene070082 | PPI |
| MS.gene070082 | MS.gene019112 | PPI |
| MS.gene028082 | MS.gene070082 | PPI |
| MS.gene00289 | MS.gene070082 | PPI |
| MS.gene68906 | MS.gene070082 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070082.t1 | MTR_5g026780 | 97.959 | 490 | 10 | 0 | 1 | 490 | 2 | 491 | 0.0 | 975 |
| MS.gene070082.t1 | MTR_5g026780 | 98.105 | 475 | 9 | 0 | 16 | 490 | 1 | 475 | 0.0 | 945 |
| MS.gene070082.t1 | MTR_0031s0060 | 72.121 | 495 | 97 | 5 | 9 | 489 | 92 | 559 | 0.0 | 713 |
| MS.gene070082.t1 | MTR_1g112950 | 73.438 | 448 | 116 | 2 | 33 | 478 | 12 | 458 | 0.0 | 672 |
| MS.gene070082.t1 | MTR_5g005160 | 57.044 | 433 | 184 | 2 | 39 | 470 | 4 | 435 | 2.13e-171 | 492 |
| MS.gene070082.t1 | MTR_8g085630 | 48.299 | 441 | 226 | 2 | 33 | 471 | 28 | 468 | 5.33e-151 | 439 |
| MS.gene070082.t1 | MTR_5g064750 | 47.392 | 441 | 230 | 2 | 40 | 478 | 20 | 460 | 5.37e-137 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070082.t1 | AT1G31830 | 72.881 | 472 | 122 | 4 | 13 | 479 | 12 | 482 | 0.0 | 711 |
| MS.gene070082.t1 | AT1G31830 | 73.448 | 467 | 118 | 4 | 18 | 479 | 1 | 466 | 0.0 | 706 |
| MS.gene070082.t1 | AT5G05630 | 66.598 | 482 | 154 | 2 | 1 | 481 | 15 | 490 | 0.0 | 676 |
| MS.gene070082.t1 | AT1G31820 | 67.550 | 453 | 144 | 2 | 40 | 490 | 31 | 482 | 0.0 | 615 |
| MS.gene070082.t1 | AT3G19553 | 55.794 | 466 | 199 | 5 | 25 | 487 | 2 | 463 | 2.61e-178 | 509 |
| MS.gene070082.t1 | AT3G13620 | 46.947 | 475 | 245 | 7 | 16 | 486 | 1 | 472 | 7.01e-141 | 414 |
Find 122 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTTCAGGTTTAATTTC+TGG | 0.135767 | 5.4:-17713003 | None:intergenic |
| GCAGCCTTGTCTCAAATTTA+TGG | 0.146769 | 5.4:+17713749 | MS.gene070082:CDS |
| GTCTCAACAAACCATCTTTC+AGG | 0.214862 | 5.4:-17713015 | None:intergenic |
| AATTCCAATCAACGTCATTT+AGG | 0.226372 | 5.4:-17713041 | None:intergenic |
| TCTTACTTATTTGAACTATA+GGG | 0.250588 | 5.4:+17712897 | MS.gene070082:CDS |
| GTTTGGGTTTCGTCTGCTTT+AGG | 0.262773 | 5.4:+17712715 | MS.gene070082:CDS |
| TCCTCATGTGATTTGCTCTT+GGG | 0.281304 | 5.4:-17712492 | None:intergenic |
| CTCATCTTCTATGAGGTATC+AGG | 0.284795 | 5.4:+17712541 | MS.gene070082:CDS |
| GAGAATTTCTTGTACTGTAT+TGG | 0.285105 | 5.4:+17713525 | MS.gene070082:CDS |
| CGTCACGGAACACCTCTTAT+AGG | 0.288096 | 5.4:+17713435 | MS.gene070082:CDS |
| GTACTGTATTGGAATGATTC+TGG | 0.296739 | 5.4:+17713536 | MS.gene070082:CDS |
| AAAATAGTGGTTATGTTGTT+TGG | 0.305948 | 5.4:+17712698 | MS.gene070082:CDS |
| TATATTTGAATACGCTGTTT+TGG | 0.313685 | 5.4:+17713064 | MS.gene070082:CDS |
| TTATCTTAAGTCAGCGGTTC+CGG | 0.313847 | 5.4:+17712822 | MS.gene070082:CDS |
| TTCCTCATGTGATTTGCTCT+TGG | 0.325329 | 5.4:-17712493 | None:intergenic |
| TTCACCAGCAAGAGTACTTA+TGG | 0.329309 | 5.4:-17713106 | None:intergenic |
| GATTGGTACCGGTGCTGTTC+CGG | 0.333898 | 5.4:+17713212 | MS.gene070082:CDS |
| GGACTTGTTGCTGTTTGTTT+AGG | 0.336950 | 5.4:+17712934 | MS.gene070082:CDS |
| TCTGATATTGCTATGATCAT+TGG | 0.344697 | 5.4:+17713267 | MS.gene070082:CDS |
| TACTTCTTTCCTCTTCTGAT+TGG | 0.345365 | 5.4:+17713195 | MS.gene070082:CDS |
| TTCTTACTTATTTGAACTAT+AGG | 0.348712 | 5.4:+17712896 | MS.gene070082:CDS |
| GAGGTATCAGGTGGACCTTT+TGG | 0.349579 | 5.4:+17712553 | MS.gene070082:CDS |
| AGCGACTCTTACCAGCTTCT+AGG | 0.353132 | 5.4:+17713366 | MS.gene070082:CDS |
| GGTCCTTTGTTAGCTTTACT+TGG | 0.355819 | 5.4:+17712601 | MS.gene070082:CDS |
| TCCTCTCCATTGACAAAATC+AGG | 0.367559 | 5.4:-17713813 | None:intergenic |
| AGCTTTGATTACTGCTGAAA+TGG | 0.368117 | 5.4:+17712660 | MS.gene070082:CDS |
| TTGTATGGCCGAGGTGCGTT+GGG | 0.372597 | 5.4:-17713594 | None:intergenic |
| GTCACGGAACACCTCTTATA+GGG | 0.376675 | 5.4:+17713436 | MS.gene070082:CDS |
| GTGGTTGAGATGGTGGCTTC+AGG | 0.380033 | 5.4:+17713296 | MS.gene070082:CDS |
| CAAACCTAAATGACGTTGAT+TGG | 0.381343 | 5.4:+17713037 | MS.gene070082:CDS |
| TTTGTATGGCCGAGGTGCGT+TGG | 0.381769 | 5.4:-17713595 | None:intergenic |
| TTCAGCAGGGTTGGATGAAA+TGG | 0.384895 | 5.4:+17712752 | MS.gene070082:CDS |
| GTTCCGCCTGGTACTTTGTA+TGG | 0.386216 | 5.4:-17713609 | None:intergenic |
| TCAGCAGTAATCAAAGCTTC+AGG | 0.389410 | 5.4:-17712655 | None:intergenic |
| TATAGGGGTTTAACCATTGT+TGG | 0.391261 | 5.4:+17712913 | MS.gene070082:CDS |
| GTCCACAACTCGCGCTGAAC+CGG | 0.400817 | 5.4:-17713231 | None:intergenic |
| AAATAGTGGTTATGTTGTTT+GGG | 0.402210 | 5.4:+17712699 | MS.gene070082:CDS |
| TGGAGAGGACACTCAATCTT+TGG | 0.404986 | 5.4:+17713827 | MS.gene070082:CDS |
| GTAAGAGTCGCTACTCATTT+CGG | 0.405142 | 5.4:-17713355 | None:intergenic |
| TCTTATAAGCGTCGTTGCTA+TGG | 0.419274 | 5.4:+17713710 | MS.gene070082:CDS |
| GACTCCATAAGTACTCTTGC+TGG | 0.422201 | 5.4:+17713102 | MS.gene070082:CDS |
| CAAAGCATAAAACAAACCTT+TGG | 0.423701 | 5.4:-17713154 | None:intergenic |
| CACGTACTCGCTCCCGGTCC+CGG | 0.431626 | 5.4:-17712449 | None:intergenic |
| GGTTCTAGTGCAATGGCAAT+GGG | 0.433376 | 5.4:+17712418 | MS.gene070082:CDS |
| CGCTTATAAGAAATACTTTG+AGG | 0.440103 | 5.4:-17713698 | None:intergenic |
| AAAGCATAAAACAAACCTTT+GGG | 0.444037 | 5.4:-17713153 | None:intergenic |
| ATGTGATTTGCTCTTGGGGA+AGG | 0.449749 | 5.4:-17712487 | None:intergenic |
| TCAGGAACACTCCATATAAA+CGG | 0.461275 | 5.4:-17712637 | None:intergenic |
| TTTCCTCTTCTGATTGGTAC+CGG | 0.464126 | 5.4:+17713201 | MS.gene070082:CDS |
| CAGAAATTAAACCTGAAAGA+TGG | 0.464224 | 5.4:+17713004 | MS.gene070082:CDS |
| CTGGTGTAATTCTACTATCA+TGG | 0.466964 | 5.4:+17713475 | MS.gene070082:CDS |
| GAGGAGTGTGGTTGAGATGG+TGG | 0.475640 | 5.4:+17713289 | MS.gene070082:CDS |
| GCGGTTCCGGCGGTAGGTGG+TGG | 0.477031 | 5.4:+17712835 | MS.gene070082:CDS |
| TTAGCTGGGTGCAGAAATTG+AGG | 0.477572 | 5.4:+17712371 | None:intergenic |
| TGCTTTGATCCTGGTTGTTG+TGG | 0.480119 | 5.4:+17713170 | MS.gene070082:CDS |
| ATTGCTCCGGTCGTTCCGCC+TGG | 0.488878 | 5.4:-17713621 | None:intergenic |
| CCTCATGTGATTTGCTCTTG+GGG | 0.493232 | 5.4:-17712491 | None:intergenic |
| AAAGTACCAGGCGGAACGAC+CGG | 0.497678 | 5.4:+17713615 | MS.gene070082:CDS |
| ACCTAGAGTATTTGCAACAT+GGG | 0.501565 | 5.4:+17712861 | MS.gene070082:CDS |
| AGGTTCTAGTGCAATGGCAA+TGG | 0.503613 | 5.4:+17712417 | MS.gene070082:CDS |
| CTTACTTATTTGAACTATAG+GGG | 0.504401 | 5.4:+17712898 | MS.gene070082:CDS |
| TTCCGGTTCAGCGCGAGTTG+TGG | 0.506009 | 5.4:+17713229 | MS.gene070082:CDS |
| AGATAATCAAGAAATAGAAC+AGG | 0.509628 | 5.4:-17712805 | None:intergenic |
| GCTTCTAGGAATGGCTGAGA+GGG | 0.512206 | 5.4:+17713380 | MS.gene070082:CDS |
| TACGGTCACGTACTCGCTCC+CGG | 0.516080 | 5.4:-17712455 | None:intergenic |
| TGTTCCGTGACGAGACCTCT+TGG | 0.516304 | 5.4:-17713424 | None:intergenic |
| TTGACAAAATCAGGTAGCTC+AGG | 0.518398 | 5.4:-17713804 | None:intergenic |
| ACAGTATCCTCAACACCAAA+AGG | 0.518485 | 5.4:-17712568 | None:intergenic |
| AAGTCAGCGGTTCCGGCGGT+AGG | 0.529529 | 5.4:+17712829 | MS.gene070082:CDS |
| CCTGGTACTTTGTATGGCCG+AGG | 0.531900 | 5.4:-17713603 | None:intergenic |
| GCTTTGATTACTGCTGAAAT+GGG | 0.532215 | 5.4:+17712661 | MS.gene070082:CDS |
| AAAACCCCATGAAAACAAAT+GGG | 0.535277 | 5.4:-17712972 | None:intergenic |
| AGCGTCGTTGCTATGGCGAT+TGG | 0.537243 | 5.4:+17713717 | MS.gene070082:CDS |
| TGGGGAAGGCATTTCACCTA+CGG | 0.540451 | 5.4:-17712473 | None:intergenic |
| TCAGCGGTTCCGGCGGTAGG+TGG | 0.541125 | 5.4:+17712832 | MS.gene070082:CDS |
| TGCAGCCGCAATGTCAAACA+TGG | 0.542519 | 5.4:+17713320 | MS.gene070082:CDS |
| CATTCCCATGTTTGACATTG+CGG | 0.545821 | 5.4:-17713325 | None:intergenic |
| GCTTATAAGAAATACTTTGA+GGG | 0.545998 | 5.4:-17713697 | None:intergenic |
| CCTCGGCCATACAAAGTACC+AGG | 0.547074 | 5.4:+17713603 | MS.gene070082:CDS |
| CTCTTACCAGCTTCTAGGAA+TGG | 0.550271 | 5.4:+17713371 | MS.gene070082:CDS |
| ACCACACAGATCAAAATTGT+AGG | 0.550771 | 5.4:-17713660 | None:intergenic |
| GAGGATACTGTGAAAGCAGC+CGG | 0.552314 | 5.4:+17712580 | MS.gene070082:CDS |
| TTGGAGGAGTGTGGTTGAGA+TGG | 0.554137 | 5.4:+17713286 | MS.gene070082:CDS |
| TCTCAGCCATTCCTAGAAGC+TGG | 0.555031 | 5.4:-17713377 | None:intergenic |
| GATATTGCTATGATCATTGG+AGG | 0.556871 | 5.4:+17713270 | MS.gene070082:CDS |
| AGCGCGAGTTGTGGACTGAC+GGG | 0.557681 | 5.4:+17713238 | MS.gene070082:CDS |
| TACCTAGAGTATTTGCAACA+TGG | 0.559602 | 5.4:+17712860 | MS.gene070082:CDS |
| CCCCATGTTGCAAATACTCT+AGG | 0.566170 | 5.4:-17712862 | None:intergenic |
| GATGCACATAATAATTGCTC+CGG | 0.566195 | 5.4:-17713634 | None:intergenic |
| CAGCGCGAGTTGTGGACTGA+CGG | 0.575381 | 5.4:+17713237 | MS.gene070082:CDS |
| TTCTCCATAAATTTGAGACA+AGG | 0.576827 | 5.4:-17713753 | None:intergenic |
| ACCATGTTCCCTGAAAATAG+TGG | 0.576856 | 5.4:+17712685 | MS.gene070082:CDS |
| GCGCTGAACCGGAACAGCAC+CGG | 0.578815 | 5.4:-17713220 | None:intergenic |
| ACACAGATCAAAATTGTAGG+AGG | 0.578866 | 5.4:-17713657 | None:intergenic |
| TTCTAGTGCAATGGCAATGG+GGG | 0.581175 | 5.4:+17712420 | MS.gene070082:CDS |
| AAGTAAAGCTAACAAAGGAC+CGG | 0.582231 | 5.4:-17712599 | None:intergenic |
| ATCTTCTATGAGGTATCAGG+TGG | 0.595096 | 5.4:+17712544 | MS.gene070082:CDS |
| ACAACAAGGTTCTAGTGCAA+TGG | 0.605934 | 5.4:+17712411 | MS.gene070082:CDS |
| TCTTAAGTCAGCGGTTCCGG+CGG | 0.606842 | 5.4:+17712825 | MS.gene070082:CDS |
| TCTTGATTATCTTAAGTCAG+CGG | 0.608921 | 5.4:+17712816 | MS.gene070082:CDS |
| TATAAGAAATACTTTGAGGG+AGG | 0.614116 | 5.4:-17713694 | None:intergenic |
| CCTAGAGTATTTGCAACATG+GGG | 0.617913 | 5.4:+17712862 | MS.gene070082:CDS |
| AGAAGTATGCCACAACAACC+AGG | 0.618863 | 5.4:-17713179 | None:intergenic |
| TCAAACACCCCAACGCACCT+CGG | 0.622823 | 5.4:+17713586 | MS.gene070082:CDS |
| AACAGCAACAAGTCCAACAA+TGG | 0.629856 | 5.4:-17712926 | None:intergenic |
| TTCACCAAGAGGTCTCGTCA+CGG | 0.632873 | 5.4:+17713420 | MS.gene070082:CDS |
| AGCTTCTAGGAATGGCTGAG+AGG | 0.637348 | 5.4:+17713379 | MS.gene070082:CDS |
| AATCCAAGTAAAGCTAACAA+AGG | 0.637507 | 5.4:-17712604 | None:intergenic |
| CACAGATCAAAATTGTAGGA+GGG | 0.640354 | 5.4:-17713656 | None:intergenic |
| CCCCAAGAGCAAATCACATG+AGG | 0.644096 | 5.4:+17712491 | MS.gene070082:CDS |
| GCACCGGTACCAATCAGAAG+AGG | 0.649774 | 5.4:-17713204 | None:intergenic |
| CTTCTAGGAATGGCTGAGAG+GGG | 0.660938 | 5.4:+17713381 | MS.gene070082:CDS |
| CTATGATCATTGGAGGAGTG+TGG | 0.665613 | 5.4:+17713277 | MS.gene070082:CDS |
| GGTAAACCACCACCTACCGC+CGG | 0.669905 | 5.4:-17712841 | None:intergenic |
| GTTCTAGTGCAATGGCAATG+GGG | 0.681571 | 5.4:+17712419 | MS.gene070082:CDS |
| GCAGCCGCAATGTCAAACAT+GGG | 0.682961 | 5.4:+17713321 | MS.gene070082:CDS |
| TGTATGGCCGAGGTGCGTTG+GGG | 0.684032 | 5.4:-17713593 | None:intergenic |
| GGTTGGATGAAATGGCTCAG+TGG | 0.700595 | 5.4:+17712760 | MS.gene070082:CDS |
| GGGAGCGAGTACGTGACCGT+AGG | 0.708466 | 5.4:+17712457 | MS.gene070082:CDS |
| ACAGCATATAATAGACAACA+AGG | 0.710785 | 5.4:+17712397 | MS.gene070082:CDS |
| TGATAGTAGAATTACACCAG+AGG | 0.722676 | 5.4:-17713472 | None:intergenic |
| CGGCCATACAAAGTACCAGG+CGG | 0.753253 | 5.4:+17713606 | MS.gene070082:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTACTTATTTGAACTATA+GGG | + | chr5.4:17712897-17712916 | MS.gene070082:CDS | 20.0% |
| !! | TTCTTACTTATTTGAACTAT+AGG | + | chr5.4:17712896-17712915 | MS.gene070082:CDS | 20.0% |
| ! | AAAATAGTGGTTATGTTGTT+TGG | + | chr5.4:17712698-17712717 | MS.gene070082:CDS | 25.0% |
| ! | AAAGCATAAAACAAACCTTT+GGG | - | chr5.4:17713156-17713175 | None:intergenic | 25.0% |
| ! | AATTTATGGAGAAAAAGAGA+TGG | + | chr5.4:17713763-17713782 | MS.gene070082:CDS | 25.0% |
| ! | AGATAATCAAGAAATAGAAC+AGG | - | chr5.4:17712808-17712827 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAACTATAG+GGG | + | chr5.4:17712898-17712917 | MS.gene070082:CDS | 25.0% |
| ! | GCTTATAAGAAATACTTTGA+GGG | - | chr5.4:17713700-17713719 | None:intergenic | 25.0% |
| !! | AAATAGTGGTTATGTTGTTT+GGG | + | chr5.4:17712699-17712718 | MS.gene070082:CDS | 25.0% |
| !! | TATATTTGAATACGCTGTTT+TGG | + | chr5.4:17713064-17713083 | MS.gene070082:CDS | 25.0% |
| !!! | GTTTTGGAATCTCAATTATT+GGG | + | chr5.4:17713080-17713099 | MS.gene070082:CDS | 25.0% |
| !!! | TGTTTTGGAATCTCAATTAT+TGG | + | chr5.4:17713079-17713098 | MS.gene070082:CDS | 25.0% |
| !!! | TTTTGGTTTTTCCGTTTATA+TGG | + | chr5.4:17712626-17712645 | MS.gene070082:CDS | 25.0% |
| AAAAACCCCATGAAAACAAA+TGG | - | chr5.4:17712976-17712995 | None:intergenic | 30.0% | |
| AAAACCCCATGAAAACAAAT+GGG | - | chr5.4:17712975-17712994 | None:intergenic | 30.0% | |
| AATCCAAGTAAAGCTAACAA+AGG | - | chr5.4:17712607-17712626 | None:intergenic | 30.0% | |
| AATTCCAATCAACGTCATTT+AGG | - | chr5.4:17713044-17713063 | None:intergenic | 30.0% | |
| ACAGCATATAATAGACAACA+AGG | + | chr5.4:17712397-17712416 | MS.gene070082:CDS | 30.0% | |
| CAAAGCATAAAACAAACCTT+TGG | - | chr5.4:17713157-17713176 | None:intergenic | 30.0% | |
| CAGAAATTAAACCTGAAAGA+TGG | + | chr5.4:17713004-17713023 | MS.gene070082:CDS | 30.0% | |
| CGCTTATAAGAAATACTTTG+AGG | - | chr5.4:17713701-17713720 | None:intergenic | 30.0% | |
| GAGAATTTCTTGTACTGTAT+TGG | + | chr5.4:17713525-17713544 | MS.gene070082:CDS | 30.0% | |
| TAGAAGATGAGAAAAACAAG+TGG | - | chr5.4:17712532-17712551 | None:intergenic | 30.0% | |
| TCTGATATTGCTATGATCAT+TGG | + | chr5.4:17713267-17713286 | MS.gene070082:CDS | 30.0% | |
| TCTTGATTATCTTAAGTCAG+CGG | + | chr5.4:17712816-17712835 | MS.gene070082:CDS | 30.0% | |
| ! | ACAACATAACCACTATTTTC+AGG | - | chr5.4:17712697-17712716 | None:intergenic | 30.0% |
| ! | CAACATAACCACTATTTTCA+GGG | - | chr5.4:17712696-17712715 | None:intergenic | 30.0% |
| ! | TATAAGAAATACTTTGAGGG+AGG | - | chr5.4:17713697-17713716 | None:intergenic | 30.0% |
| ! | TGTTTTTCTCATCTTCTATG+AGG | + | chr5.4:17712534-17712553 | MS.gene070082:CDS | 30.0% |
| ! | TTCTCCATAAATTTGAGACA+AGG | - | chr5.4:17713756-17713775 | None:intergenic | 30.0% |
| !! | CATCTTTCAGGTTTAATTTC+TGG | - | chr5.4:17713006-17713025 | None:intergenic | 30.0% |
| !! | GAAAAAAGTATCCCTATAAG+AGG | - | chr5.4:17713450-17713469 | None:intergenic | 30.0% |
| !!! | GTTAGCTTTACTTGGATTTT+TGG | + | chr5.4:17712609-17712628 | MS.gene070082:CDS | 30.0% |
| !!! | TTTGTTTTATGCTTTGATCC+TGG | + | chr5.4:17713161-17713180 | MS.gene070082:CDS | 30.0% |
| AAGTAAAGCTAACAAAGGAC+CGG | - | chr5.4:17712602-17712621 | None:intergenic | 35.0% | |
| ACACAGATCAAAATTGTAGG+AGG | - | chr5.4:17713660-17713679 | None:intergenic | 35.0% | |
| ACCACACAGATCAAAATTGT+AGG | - | chr5.4:17713663-17713682 | None:intergenic | 35.0% | |
| CAAACCTAAATGACGTTGAT+TGG | + | chr5.4:17713037-17713056 | MS.gene070082:CDS | 35.0% | |
| CACAGATCAAAATTGTAGGA+GGG | - | chr5.4:17713659-17713678 | None:intergenic | 35.0% | |
| CCAAAGAAAAATCTTCCCAA+AGG | + | chr5.4:17713138-17713157 | MS.gene070082:CDS | 35.0% | |
| CTGGTGTAATTCTACTATCA+TGG | + | chr5.4:17713475-17713494 | MS.gene070082:CDS | 35.0% | |
| GATATTGCTATGATCATTGG+AGG | + | chr5.4:17713270-17713289 | MS.gene070082:CDS | 35.0% | |
| GATGCACATAATAATTGCTC+CGG | - | chr5.4:17713637-17713656 | None:intergenic | 35.0% | |
| GCTTTGATTACTGCTGAAAT+GGG | + | chr5.4:17712661-17712680 | MS.gene070082:CDS | 35.0% | |
| GTACTGTATTGGAATGATTC+TGG | + | chr5.4:17713536-17713555 | MS.gene070082:CDS | 35.0% | |
| TACTTCTTTCCTCTTCTGAT+TGG | + | chr5.4:17713195-17713214 | MS.gene070082:CDS | 35.0% | |
| TATAGGGGTTTAACCATTGT+TGG | + | chr5.4:17712913-17712932 | MS.gene070082:CDS | 35.0% | |
| TCAGGAACACTCCATATAAA+CGG | - | chr5.4:17712640-17712659 | None:intergenic | 35.0% | |
| TGATAGTAGAATTACACCAG+AGG | - | chr5.4:17713475-17713494 | None:intergenic | 35.0% | |
| ! | ACCTAGAGTATTTGCAACAT+GGG | + | chr5.4:17712861-17712880 | MS.gene070082:CDS | 35.0% |
| ! | AGCTTTGATTACTGCTGAAA+TGG | + | chr5.4:17712660-17712679 | MS.gene070082:CDS | 35.0% |
| ! | TACCTAGAGTATTTGCAACA+TGG | + | chr5.4:17712860-17712879 | MS.gene070082:CDS | 35.0% |
| !! | CCTTTGGGAAGATTTTTCTT+TGG | - | chr5.4:17713141-17713160 | None:intergenic | 35.0% |
| !! | CTTCTCCCATTTGTTTTCAT+GGG | + | chr5.4:17712967-17712986 | MS.gene070082:CDS | 35.0% |
| !! | TCCTACAATTTTGATCTGTG+TGG | + | chr5.4:17713659-17713678 | MS.gene070082:CDS | 35.0% |
| !! | TTCTCCCATTTGTTTTCATG+GGG | + | chr5.4:17712968-17712987 | MS.gene070082:CDS | 35.0% |
| AACAGCAACAAGTCCAACAA+TGG | - | chr5.4:17712929-17712948 | None:intergenic | 40.0% | |
| ACAGTATCCTCAACACCAAA+AGG | - | chr5.4:17712571-17712590 | None:intergenic | 40.0% | |
| ACCATGTTCCCTGAAAATAG+TGG | + | chr5.4:17712685-17712704 | MS.gene070082:CDS | 40.0% | |
| CATTCCCATGTTTGACATTG+CGG | - | chr5.4:17713328-17713347 | None:intergenic | 40.0% | |
| GTAAGAGTCGCTACTCATTT+CGG | - | chr5.4:17713358-17713377 | None:intergenic | 40.0% | |
| GTCTCAACAAACCATCTTTC+AGG | - | chr5.4:17713018-17713037 | None:intergenic | 40.0% | |
| TCAGCAGTAATCAAAGCTTC+AGG | - | chr5.4:17712658-17712677 | None:intergenic | 40.0% | |
| TCCTCTCCATTGACAAAATC+AGG | - | chr5.4:17713816-17713835 | None:intergenic | 40.0% | |
| TTATCTTAAGTCAGCGGTTC+CGG | + | chr5.4:17712822-17712841 | MS.gene070082:CDS | 40.0% | |
| TTGACAAAATCAGGTAGCTC+AGG | - | chr5.4:17713807-17713826 | None:intergenic | 40.0% | |
| TTTCCTCTTCTGATTGGTAC+CGG | + | chr5.4:17713201-17713220 | MS.gene070082:CDS | 40.0% | |
| ! | ACAACAAGGTTCTAGTGCAA+TGG | + | chr5.4:17712411-17712430 | MS.gene070082:CDS | 40.0% |
| ! | ACCTGATTTTGTCAATGGAG+AGG | + | chr5.4:17713812-17713831 | MS.gene070082:CDS | 40.0% |
| ! | ATCTTCTATGAGGTATCAGG+TGG | + | chr5.4:17712544-17712563 | MS.gene070082:CDS | 40.0% |
| ! | CCTAGAGTATTTGCAACATG+GGG | + | chr5.4:17712862-17712881 | MS.gene070082:CDS | 40.0% |
| ! | CTCATCTTCTATGAGGTATC+AGG | + | chr5.4:17712541-17712560 | MS.gene070082:CDS | 40.0% |
| ! | GAGCTACCTGATTTTGTCAA+TGG | + | chr5.4:17713807-17713826 | MS.gene070082:CDS | 40.0% |
| ! | GCAGCCTTGTCTCAAATTTA+TGG | + | chr5.4:17713749-17713768 | MS.gene070082:CDS | 40.0% |
| ! | TCTTATAAGCGTCGTTGCTA+TGG | + | chr5.4:17713710-17713729 | MS.gene070082:CDS | 40.0% |
| !! | ACCACTATTTTCAGGGAACA+TGG | - | chr5.4:17712689-17712708 | None:intergenic | 40.0% |
| !! | GCTTCTCCCATTTGTTTTCA+TGG | + | chr5.4:17712966-17712985 | MS.gene070082:CDS | 40.0% |
| !! | GGACTTGTTGCTGTTTGTTT+AGG | + | chr5.4:17712934-17712953 | MS.gene070082:CDS | 40.0% |
| !! | GGTCCTTTGTTAGCTTTACT+TGG | + | chr5.4:17712601-17712620 | MS.gene070082:CDS | 40.0% |
| !! | GTCTGCTTTAGGTCCTTTTT+GGG | + | chr5.4:17712726-17712745 | MS.gene070082:CDS | 40.0% |
| !! | TCCTCATGTGATTTGCTCTT+GGG | - | chr5.4:17712495-17712514 | None:intergenic | 40.0% |
| !! | TCTGCTTTAGGTCCTTTTTG+GGG | + | chr5.4:17712727-17712746 | MS.gene070082:CDS | 40.0% |
| !! | TTCACCAGCAAGAGTACTTA+TGG | - | chr5.4:17713109-17713128 | None:intergenic | 40.0% |
| !! | TTCCTCATGTGATTTGCTCT+TGG | - | chr5.4:17712496-17712515 | None:intergenic | 40.0% |
| CCCCATGTTGCAAATACTCT+AGG | - | chr5.4:17712865-17712884 | None:intergenic | 45.0% | |
| CTATGATCATTGGAGGAGTG+TGG | + | chr5.4:17713277-17713296 | MS.gene070082:CDS | 45.0% | |
| GACCTCTTGGTGAAAAACTC+TGG | - | chr5.4:17713414-17713433 | None:intergenic | 45.0% | |
| GACTCCATAAGTACTCTTGC+TGG | + | chr5.4:17713102-17713121 | MS.gene070082:CDS | 45.0% | |
| GTCACGGAACACCTCTTATA+GGG | + | chr5.4:17713436-17713455 | MS.gene070082:CDS | 45.0% | |
| GTTCTAGTGCAATGGCAATG+GGG | + | chr5.4:17712419-17712438 | MS.gene070082:CDS | 45.0% | |
| TGCTTTGATCCTGGTTGTTG+TGG | + | chr5.4:17713170-17713189 | MS.gene070082:CDS | 45.0% | |
| TGGAGAGGACACTCAATCTT+TGG | + | chr5.4:17713827-17713846 | MS.gene070082:CDS | 45.0% | |
| TTCAGCAGGGTTGGATGAAA+TGG | + | chr5.4:17712752-17712771 | MS.gene070082:CDS | 45.0% | |
| TTCTAGTGCAATGGCAATGG+GGG | + | chr5.4:17712420-17712439 | MS.gene070082:CDS | 45.0% | |
| ! | AGAAGTATGCCACAACAACC+AGG | - | chr5.4:17713182-17713201 | None:intergenic | 45.0% |
| ! | AGGTTCTAGTGCAATGGCAA+TGG | + | chr5.4:17712417-17712436 | MS.gene070082:CDS | 45.0% |
| ! | CTCTTACCAGCTTCTAGGAA+TGG | + | chr5.4:17713371-17713390 | MS.gene070082:CDS | 45.0% |
| ! | GGTTCTAGTGCAATGGCAAT+GGG | + | chr5.4:17712418-17712437 | MS.gene070082:CDS | 45.0% |
| ! | GTTTGGGTTTCGTCTGCTTT+AGG | + | chr5.4:17712715-17712734 | MS.gene070082:CDS | 45.0% |
| ! | TGCCAGAGTTTTTCACCAAG+AGG | + | chr5.4:17713409-17713428 | MS.gene070082:CDS | 45.0% |
| !! | ATGTGATTTGCTCTTGGGGA+AGG | - | chr5.4:17712490-17712509 | None:intergenic | 45.0% |
| !! | CCTCATGTGATTTGCTCTTG+GGG | - | chr5.4:17712494-17712513 | None:intergenic | 45.0% |
| !! | CGTCTGCTTTAGGTCCTTTT+TGG | + | chr5.4:17712725-17712744 | MS.gene070082:CDS | 45.0% |
| !! | CTGCTTTAGGTCCTTTTTGG+GGG | + | chr5.4:17712728-17712747 | MS.gene070082:CDS | 45.0% |
| !!! | GGGATACTTTTTTCAGCCTC+TGG | + | chr5.4:17713456-17713475 | MS.gene070082:CDS | 45.0% |
| AGCGACTCTTACCAGCTTCT+AGG | + | chr5.4:17713366-17713385 | MS.gene070082:CDS | 50.0% | |
| CCCCAAGAGCAAATCACATG+AGG | + | chr5.4:17712491-17712510 | MS.gene070082:CDS | 50.0% | |
| CGTCACGGAACACCTCTTAT+AGG | + | chr5.4:17713435-17713454 | MS.gene070082:CDS | 50.0% | |
| GAGGATACTGTGAAAGCAGC+CGG | + | chr5.4:17712580-17712599 | MS.gene070082:CDS | 50.0% | |
| GCAGCCGCAATGTCAAACAT+GGG | + | chr5.4:17713321-17713340 | MS.gene070082:CDS | 50.0% | |
| GGTTGGATGAAATGGCTCAG+TGG | + | chr5.4:17712760-17712779 | MS.gene070082:CDS | 50.0% | |
| GTTCCGCCTGGTACTTTGTA+TGG | - | chr5.4:17713612-17713631 | None:intergenic | 50.0% | |
| TCTCAGCCATTCCTAGAAGC+TGG | - | chr5.4:17713380-17713399 | None:intergenic | 50.0% | |
| TGCAGCCGCAATGTCAAACA+TGG | + | chr5.4:17713320-17713339 | MS.gene070082:CDS | 50.0% | |
| TTCACCAAGAGGTCTCGTCA+CGG | + | chr5.4:17713420-17713439 | MS.gene070082:CDS | 50.0% | |
| ! | AGCTTCTAGGAATGGCTGAG+AGG | + | chr5.4:17713379-17713398 | MS.gene070082:CDS | 50.0% |
| ! | CTTCTAGGAATGGCTGAGAG+GGG | + | chr5.4:17713381-17713400 | MS.gene070082:CDS | 50.0% |
| ! | GCTTCTAGGAATGGCTGAGA+GGG | + | chr5.4:17713380-17713399 | MS.gene070082:CDS | 50.0% |
| ! | TTGGAGGAGTGTGGTTGAGA+TGG | + | chr5.4:17713286-17713305 | MS.gene070082:CDS | 50.0% |
| !! | CCTTTTTGGGGGTTTCAGCA+GGG | + | chr5.4:17712739-17712758 | MS.gene070082:CDS | 50.0% |
| !! | GAGGTATCAGGTGGACCTTT+TGG | + | chr5.4:17712553-17712572 | MS.gene070082:CDS | 50.0% |
| !! | TCCTTTTTGGGGGTTTCAGC+AGG | + | chr5.4:17712738-17712757 | MS.gene070082:CDS | 50.0% |
| !! | TGGGGAAGGCATTTCACCTA+CGG | - | chr5.4:17712476-17712495 | None:intergenic | 50.0% |
| !!! | AGGTGGACCTTTTGGTGTTG+AGG | + | chr5.4:17712561-17712580 | MS.gene070082:CDS | 50.0% |
| AGCGTCGTTGCTATGGCGAT+TGG | + | chr5.4:17713717-17713736 | MS.gene070082:CDS | 55.0% | |
| ATGGCAATGGGGGAGTTCAC+CGG | + | chr5.4:17712430-17712449 | MS.gene070082:CDS | 55.0% | |
| CCCTGCTGAAACCCCCAAAA+AGG | - | chr5.4:17712742-17712761 | None:intergenic | 55.0% | |
| CCTGGTACTTTGTATGGCCG+AGG | - | chr5.4:17713606-17713625 | None:intergenic | 55.0% | |
| TCAAACACCCCAACGCACCT+CGG | + | chr5.4:17713586-17713605 | MS.gene070082:CDS | 55.0% | |
| TCTTAAGTCAGCGGTTCCGG+CGG | + | chr5.4:17712825-17712844 | MS.gene070082:CDS | 55.0% | |
| TGTTCCGTGACGAGACCTCT+TGG | - | chr5.4:17713427-17713446 | None:intergenic | 55.0% | |
| TTGTATGGCCGAGGTGCGTT+GGG | - | chr5.4:17713597-17713616 | None:intergenic | 55.0% | |
| TTTGGGGGTTTCAGCAGGGT+TGG | + | chr5.4:17712743-17712762 | MS.gene070082:CDS | 55.0% | |
| TTTGTATGGCCGAGGTGCGT+TGG | - | chr5.4:17713598-17713617 | None:intergenic | 55.0% | |
| ! | AAAGTACCAGGCGGAACGAC+CGG | + | chr5.4:17713615-17713634 | MS.gene070082:CDS | 55.0% |
| ! | CCTCGGCCATACAAAGTACC+AGG | + | chr5.4:17713603-17713622 | MS.gene070082:CDS | 55.0% |
| ! | CGGCCATACAAAGTACCAGG+CGG | + | chr5.4:17713606-17713625 | MS.gene070082:CDS | 55.0% |
| ! | GAGGAGTGTGGTTGAGATGG+TGG | + | chr5.4:17713289-17713308 | MS.gene070082:CDS | 55.0% |
| ! | GCACCGGTACCAATCAGAAG+AGG | - | chr5.4:17713207-17713226 | None:intergenic | 55.0% |
| ! | GTGGTTGAGATGGTGGCTTC+AGG | + | chr5.4:17713296-17713315 | MS.gene070082:CDS | 55.0% |
| !! | GATTGGTACCGGTGCTGTTC+CGG | + | chr5.4:17713212-17713231 | MS.gene070082:CDS | 55.0% |
| GGTAAACCACCACCTACCGC+CGG | - | chr5.4:17712844-17712863 | None:intergenic | 60.0% | |
| GTCCACAACTCGCGCTGAAC+CGG | - | chr5.4:17713234-17713253 | None:intergenic | 60.0% | |
| TACGGTCACGTACTCGCTCC+CGG | - | chr5.4:17712458-17712477 | None:intergenic | 60.0% | |
| TGGCAATGGGGGAGTTCACC+GGG | + | chr5.4:17712431-17712450 | MS.gene070082:CDS | 60.0% | |
| TGTATGGCCGAGGTGCGTTG+GGG | - | chr5.4:17713596-17713615 | None:intergenic | 60.0% | |
| TTCCGGTTCAGCGCGAGTTG+TGG | + | chr5.4:17713229-17713248 | MS.gene070082:CDS | 60.0% | |
| ! | AGCGCGAGTTGTGGACTGAC+GGG | + | chr5.4:17713238-17713257 | MS.gene070082:CDS | 60.0% |
| ! | CAGCGCGAGTTGTGGACTGA+CGG | + | chr5.4:17713237-17713256 | MS.gene070082:CDS | 60.0% |
| AAGTCAGCGGTTCCGGCGGT+AGG | + | chr5.4:17712829-17712848 | MS.gene070082:CDS | 65.0% | |
| ATGGGGGAGTTCACCGGGAC+CGG | + | chr5.4:17712436-17712455 | MS.gene070082:CDS | 65.0% | |
| ATTGCTCCGGTCGTTCCGCC+TGG | - | chr5.4:17713624-17713643 | None:intergenic | 65.0% | |
| GCGCTGAACCGGAACAGCAC+CGG | - | chr5.4:17713223-17713242 | None:intergenic | 65.0% | |
| GGGAGCGAGTACGTGACCGT+AGG | + | chr5.4:17712457-17712476 | MS.gene070082:CDS | 65.0% | |
| CACGTACTCGCTCCCGGTCC+CGG | - | chr5.4:17712452-17712471 | None:intergenic | 70.0% | |
| TCAGCGGTTCCGGCGGTAGG+TGG | + | chr5.4:17712832-17712851 | MS.gene070082:CDS | 70.0% | |
| TGGGGGAGTTCACCGGGACC+GGG | + | chr5.4:17712437-17712456 | MS.gene070082:CDS | 70.0% | |
| GCGGTTCCGGCGGTAGGTGG+TGG | + | chr5.4:17712835-17712854 | MS.gene070082:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17712385 | 17713857 | 17712385 | ID=MS.gene070082 |
| chr5.4 | mRNA | 17712385 | 17713857 | 17712385 | ID=MS.gene070082.t1;Parent=MS.gene070082 |
| chr5.4 | exon | 17712385 | 17713857 | 17712385 | ID=MS.gene070082.t1.exon1;Parent=MS.gene070082.t1 |
| chr5.4 | CDS | 17712385 | 17713857 | 17712385 | ID=cds.MS.gene070082.t1;Parent=MS.gene070082.t1 |
| Gene Sequence |
| Protein sequence |
