Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028082.t1 | XP_003612596.2 | 98 | 491 | 10 | 0 | 1 | 491 | 1 | 491 | 2.30E-280 | 974.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028082.t1 | Q9C6S5 | 73.0 | 471 | 121 | 4 | 14 | 479 | 12 | 481 | 2.2e-202 | 706.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028082.t1 | G7K6T4 | 98.0 | 491 | 10 | 0 | 1 | 491 | 1 | 491 | 1.7e-280 | 974.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22262 | MS.gene028082 | PPI |
| MS.gene028082 | MS.gene40531 | PPI |
| MS.gene028082 | MS.gene92363 | PPI |
| MS.gene028082 | MS.gene84987 | PPI |
| MS.gene028082 | MS.gene004548 | PPI |
| MS.gene028082 | MS.gene019112 | PPI |
| MS.gene028082 | MS.gene72828 | PPI |
| MS.gene028082 | MS.gene52398 | PPI |
| MS.gene028082 | MS.gene046947 | PPI |
| MS.gene028082 | MS.gene68906 | PPI |
| MS.gene028082 | MS.gene070082 | PPI |
| MS.gene028082 | MS.gene039946 | PPI |
| MS.gene028082 | MS.gene00289 | PPI |
| MS.gene028082 | MS.gene22262 | PPI |
| MS.gene028082 | MS.gene024967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028082.t1 | MTR_5g026780 | 97.963 | 491 | 10 | 0 | 1 | 491 | 1 | 491 | 0.0 | 978 |
| MS.gene028082.t1 | MTR_5g026780 | 98.105 | 475 | 9 | 0 | 17 | 491 | 1 | 475 | 0.0 | 945 |
| MS.gene028082.t1 | MTR_0031s0060 | 72.121 | 495 | 97 | 5 | 10 | 490 | 92 | 559 | 0.0 | 713 |
| MS.gene028082.t1 | MTR_1g112950 | 73.438 | 448 | 116 | 2 | 34 | 479 | 12 | 458 | 0.0 | 673 |
| MS.gene028082.t1 | MTR_5g005160 | 57.044 | 433 | 184 | 2 | 40 | 471 | 4 | 435 | 2.33e-171 | 491 |
| MS.gene028082.t1 | MTR_8g085630 | 48.299 | 441 | 226 | 2 | 34 | 472 | 28 | 468 | 5.35e-151 | 440 |
| MS.gene028082.t1 | MTR_5g064750 | 47.392 | 441 | 230 | 2 | 41 | 479 | 20 | 460 | 6.26e-137 | 403 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028082.t1 | AT1G31830 | 72.881 | 472 | 122 | 4 | 14 | 480 | 12 | 482 | 0.0 | 711 |
| MS.gene028082.t1 | AT1G31830 | 73.448 | 467 | 118 | 4 | 19 | 480 | 1 | 466 | 0.0 | 706 |
| MS.gene028082.t1 | AT5G05630 | 66.598 | 482 | 154 | 2 | 2 | 482 | 15 | 490 | 0.0 | 675 |
| MS.gene028082.t1 | AT1G31820 | 67.550 | 453 | 144 | 2 | 41 | 491 | 31 | 482 | 0.0 | 615 |
| MS.gene028082.t1 | AT3G19553 | 55.794 | 466 | 199 | 5 | 26 | 488 | 2 | 463 | 2.79e-178 | 509 |
| MS.gene028082.t1 | AT3G13620 | 46.947 | 475 | 245 | 7 | 17 | 487 | 1 | 472 | 7.26e-141 | 414 |
Find 122 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTTCAGGTTTAATTTC+TGG | 0.135767 | 5.4:-17699256 | None:intergenic |
| GCAGCCTTGTCTCAAATTTA+TGG | 0.146769 | 5.4:+17700002 | MS.gene028082:CDS |
| GTCTCAACAAACCATCTTTC+AGG | 0.214862 | 5.4:-17699268 | None:intergenic |
| AATTCCAATCAACGTCATTT+AGG | 0.226372 | 5.4:-17699294 | None:intergenic |
| TCTTACTTATTTGAACTATA+GGG | 0.250588 | 5.4:+17699150 | MS.gene028082:CDS |
| GTTTGGGTTTCGTCTGCTTT+AGG | 0.262773 | 5.4:+17698968 | MS.gene028082:CDS |
| TCCTCATGTGATTTGCTCTT+GGG | 0.281304 | 5.4:-17698745 | None:intergenic |
| CTCATCTTCTATGAGGTATC+AGG | 0.284795 | 5.4:+17698794 | MS.gene028082:CDS |
| GAGAATTTCTTGTACTGTAT+TGG | 0.285105 | 5.4:+17699778 | MS.gene028082:CDS |
| CGTCACGGAACACCTCTTAT+AGG | 0.288096 | 5.4:+17699688 | MS.gene028082:CDS |
| GTACTGTATTGGAATGATTC+TGG | 0.296739 | 5.4:+17699789 | MS.gene028082:CDS |
| AAAATAGTGGTTATGTTGTT+TGG | 0.305948 | 5.4:+17698951 | MS.gene028082:CDS |
| TATATTTGAATACGCTGTTT+TGG | 0.313685 | 5.4:+17699317 | MS.gene028082:CDS |
| TTATCTTAAGTCAGCGGTTC+CGG | 0.313847 | 5.4:+17699075 | MS.gene028082:CDS |
| TTCCTCATGTGATTTGCTCT+TGG | 0.325329 | 5.4:-17698746 | None:intergenic |
| TTCACCAGCAAGAGTACTTA+TGG | 0.329309 | 5.4:-17699359 | None:intergenic |
| GATTGGTACCGGTGCTGTTC+CGG | 0.333898 | 5.4:+17699465 | MS.gene028082:CDS |
| GGACTTGTTGCTGTTTGTTT+AGG | 0.336950 | 5.4:+17699187 | MS.gene028082:CDS |
| TCTGATATTGCTATGATCAT+TGG | 0.344697 | 5.4:+17699520 | MS.gene028082:CDS |
| TACTTCTTTCCTCTTCTGAT+TGG | 0.345365 | 5.4:+17699448 | MS.gene028082:CDS |
| TTCTTACTTATTTGAACTAT+AGG | 0.348712 | 5.4:+17699149 | MS.gene028082:CDS |
| GAGGTATCAGGTGGACCTTT+TGG | 0.349579 | 5.4:+17698806 | MS.gene028082:CDS |
| AGCGACTCTTACCAGCTTCT+AGG | 0.353132 | 5.4:+17699619 | MS.gene028082:CDS |
| GGTCCTTTGTTAGCTTTACT+TGG | 0.355819 | 5.4:+17698854 | MS.gene028082:CDS |
| TCCTCTCCATTGACAAAATC+AGG | 0.367559 | 5.4:-17700066 | None:intergenic |
| AGCTTTGATTACTGCTGAAA+TGG | 0.368117 | 5.4:+17698913 | MS.gene028082:CDS |
| TTGTATGGCCGAGGTGCGTT+GGG | 0.372597 | 5.4:-17699847 | None:intergenic |
| GTCACGGAACACCTCTTATA+GGG | 0.376675 | 5.4:+17699689 | MS.gene028082:CDS |
| GTGGTTGAGATGGTGGCTTC+AGG | 0.380033 | 5.4:+17699549 | MS.gene028082:CDS |
| CAAACCTAAATGACGTTGAT+TGG | 0.381343 | 5.4:+17699290 | MS.gene028082:CDS |
| TTTGTATGGCCGAGGTGCGT+TGG | 0.381769 | 5.4:-17699848 | None:intergenic |
| TTCAGCAGGGTTGGATGAAA+TGG | 0.384895 | 5.4:+17699005 | MS.gene028082:CDS |
| GTTCCGCCTGGTACTTTGTA+TGG | 0.386216 | 5.4:-17699862 | None:intergenic |
| TCAGCAGTAATCAAAGCTTC+AGG | 0.389410 | 5.4:-17698908 | None:intergenic |
| TATAGGGGTTTAACCATTGT+TGG | 0.391261 | 5.4:+17699166 | MS.gene028082:CDS |
| GTCCACAACTCGCGCTGAAC+CGG | 0.400817 | 5.4:-17699484 | None:intergenic |
| AAATAGTGGTTATGTTGTTT+GGG | 0.402210 | 5.4:+17698952 | MS.gene028082:CDS |
| TGGAGAGGACACTCAATCTT+TGG | 0.404986 | 5.4:+17700080 | MS.gene028082:CDS |
| GTAAGAGTCGCTACTCATTT+CGG | 0.405142 | 5.4:-17699608 | None:intergenic |
| TCTTATAAGCGTCGTTGCTA+TGG | 0.419274 | 5.4:+17699963 | MS.gene028082:CDS |
| GACTCCATAAGTACTCTTGC+TGG | 0.422201 | 5.4:+17699355 | MS.gene028082:CDS |
| CAAAGCATAAAACAAACCTT+TGG | 0.423701 | 5.4:-17699407 | None:intergenic |
| CACGTACTCGCTCCCGGTCC+CGG | 0.431626 | 5.4:-17698702 | None:intergenic |
| GGTTCTAGTGCAATGGCAAT+GGG | 0.433376 | 5.4:+17698671 | MS.gene028082:CDS |
| CGCTTATAAGAAATACTTTG+AGG | 0.440103 | 5.4:-17699951 | None:intergenic |
| AAAGCATAAAACAAACCTTT+GGG | 0.444037 | 5.4:-17699406 | None:intergenic |
| ATGTGATTTGCTCTTGGGGA+AGG | 0.449749 | 5.4:-17698740 | None:intergenic |
| TCAGGAACACTCCATATAAA+CGG | 0.461275 | 5.4:-17698890 | None:intergenic |
| TTTCCTCTTCTGATTGGTAC+CGG | 0.464126 | 5.4:+17699454 | MS.gene028082:CDS |
| CAGAAATTAAACCTGAAAGA+TGG | 0.464224 | 5.4:+17699257 | MS.gene028082:CDS |
| CTGGTGTAATTCTACTATCA+TGG | 0.466964 | 5.4:+17699728 | MS.gene028082:CDS |
| GAGGAGTGTGGTTGAGATGG+TGG | 0.475640 | 5.4:+17699542 | MS.gene028082:CDS |
| GCGGTTCCGGCGGTAGGTGG+TGG | 0.477031 | 5.4:+17699088 | MS.gene028082:CDS |
| TTAGCTGGGTGCAGAAATTG+AGG | 0.477572 | 5.4:+17698624 | MS.gene028082:intron |
| TGCTTTGATCCTGGTTGTTG+TGG | 0.480119 | 5.4:+17699423 | MS.gene028082:CDS |
| ATTGCTCCGGTCGTTCCGCC+TGG | 0.488878 | 5.4:-17699874 | None:intergenic |
| CCTCATGTGATTTGCTCTTG+GGG | 0.493232 | 5.4:-17698744 | None:intergenic |
| AAAGTACCAGGCGGAACGAC+CGG | 0.497678 | 5.4:+17699868 | MS.gene028082:CDS |
| ACCTAGAGTATTTGCAACAT+GGG | 0.501565 | 5.4:+17699114 | MS.gene028082:CDS |
| AGGTTCTAGTGCAATGGCAA+TGG | 0.503613 | 5.4:+17698670 | MS.gene028082:CDS |
| CTTACTTATTTGAACTATAG+GGG | 0.504401 | 5.4:+17699151 | MS.gene028082:CDS |
| TTCCGGTTCAGCGCGAGTTG+TGG | 0.506009 | 5.4:+17699482 | MS.gene028082:CDS |
| AGATAATCAAGAAATAGAAC+AGG | 0.509628 | 5.4:-17699058 | None:intergenic |
| GCTTCTAGGAATGGCTGAGA+GGG | 0.512206 | 5.4:+17699633 | MS.gene028082:CDS |
| TACGGTCACGTACTCGCTCC+CGG | 0.516080 | 5.4:-17698708 | None:intergenic |
| TGTTCCGTGACGAGACCTCT+TGG | 0.516304 | 5.4:-17699677 | None:intergenic |
| TTGACAAAATCAGGTAGCTC+AGG | 0.518398 | 5.4:-17700057 | None:intergenic |
| ACAGTATCCTCAACACCAAA+AGG | 0.518485 | 5.4:-17698821 | None:intergenic |
| AAGTCAGCGGTTCCGGCGGT+AGG | 0.529529 | 5.4:+17699082 | MS.gene028082:CDS |
| CCTGGTACTTTGTATGGCCG+AGG | 0.531900 | 5.4:-17699856 | None:intergenic |
| GCTTTGATTACTGCTGAAAT+GGG | 0.532215 | 5.4:+17698914 | MS.gene028082:CDS |
| AAAACCCCATGAAAACAAAT+GGG | 0.535277 | 5.4:-17699225 | None:intergenic |
| AGCGTCGTTGCTATGGCGAT+TGG | 0.537243 | 5.4:+17699970 | MS.gene028082:CDS |
| TGGGGAAGGCATTTCACCTA+CGG | 0.540451 | 5.4:-17698726 | None:intergenic |
| TCAGCGGTTCCGGCGGTAGG+TGG | 0.541125 | 5.4:+17699085 | MS.gene028082:CDS |
| TGCAGCCGCAATGTCAAACA+TGG | 0.542519 | 5.4:+17699573 | MS.gene028082:CDS |
| CATTCCCATGTTTGACATTG+CGG | 0.545821 | 5.4:-17699578 | None:intergenic |
| GCTTATAAGAAATACTTTGA+GGG | 0.545998 | 5.4:-17699950 | None:intergenic |
| CCTCGGCCATACAAAGTACC+AGG | 0.547074 | 5.4:+17699856 | MS.gene028082:CDS |
| CTCTTACCAGCTTCTAGGAA+TGG | 0.550271 | 5.4:+17699624 | MS.gene028082:CDS |
| ACCACACAGATCAAAATTGT+AGG | 0.550771 | 5.4:-17699913 | None:intergenic |
| GAGGATACTGTGAAAGCAGC+CGG | 0.552314 | 5.4:+17698833 | MS.gene028082:CDS |
| TTGGAGGAGTGTGGTTGAGA+TGG | 0.554137 | 5.4:+17699539 | MS.gene028082:CDS |
| TCTCAGCCATTCCTAGAAGC+TGG | 0.555031 | 5.4:-17699630 | None:intergenic |
| GATATTGCTATGATCATTGG+AGG | 0.556871 | 5.4:+17699523 | MS.gene028082:CDS |
| AGCGCGAGTTGTGGACTGAC+GGG | 0.557681 | 5.4:+17699491 | MS.gene028082:CDS |
| TACCTAGAGTATTTGCAACA+TGG | 0.559602 | 5.4:+17699113 | MS.gene028082:CDS |
| CCCCATGTTGCAAATACTCT+AGG | 0.566170 | 5.4:-17699115 | None:intergenic |
| GATGCACATAATAATTGCTC+CGG | 0.566195 | 5.4:-17699887 | None:intergenic |
| CAGCGCGAGTTGTGGACTGA+CGG | 0.575381 | 5.4:+17699490 | MS.gene028082:CDS |
| TTCTCCATAAATTTGAGACA+AGG | 0.576827 | 5.4:-17700006 | None:intergenic |
| ACCATGTTCCCTGAAAATAG+TGG | 0.576856 | 5.4:+17698938 | MS.gene028082:CDS |
| GCGCTGAACCGGAACAGCAC+CGG | 0.578815 | 5.4:-17699473 | None:intergenic |
| ACACAGATCAAAATTGTAGG+AGG | 0.578866 | 5.4:-17699910 | None:intergenic |
| TTCTAGTGCAATGGCAATGG+GGG | 0.581175 | 5.4:+17698673 | MS.gene028082:CDS |
| AAGTAAAGCTAACAAAGGAC+CGG | 0.582231 | 5.4:-17698852 | None:intergenic |
| ATCTTCTATGAGGTATCAGG+TGG | 0.595096 | 5.4:+17698797 | MS.gene028082:CDS |
| ACAACAAGGTTCTAGTGCAA+TGG | 0.605934 | 5.4:+17698664 | MS.gene028082:CDS |
| TCTTAAGTCAGCGGTTCCGG+CGG | 0.606842 | 5.4:+17699078 | MS.gene028082:CDS |
| TCTTGATTATCTTAAGTCAG+CGG | 0.608921 | 5.4:+17699069 | MS.gene028082:CDS |
| TATAAGAAATACTTTGAGGG+AGG | 0.614116 | 5.4:-17699947 | None:intergenic |
| CCTAGAGTATTTGCAACATG+GGG | 0.617913 | 5.4:+17699115 | MS.gene028082:CDS |
| AGAAGTATGCCACAACAACC+AGG | 0.618863 | 5.4:-17699432 | None:intergenic |
| TCAAACACCCCAACGCACCT+CGG | 0.622823 | 5.4:+17699839 | MS.gene028082:CDS |
| AACAGCAACAAGTCCAACAA+TGG | 0.629856 | 5.4:-17699179 | None:intergenic |
| TTCACCAAGAGGTCTCGTCA+CGG | 0.632873 | 5.4:+17699673 | MS.gene028082:CDS |
| AGCTTCTAGGAATGGCTGAG+AGG | 0.637348 | 5.4:+17699632 | MS.gene028082:CDS |
| AATCCAAGTAAAGCTAACAA+AGG | 0.637507 | 5.4:-17698857 | None:intergenic |
| CACAGATCAAAATTGTAGGA+GGG | 0.640354 | 5.4:-17699909 | None:intergenic |
| CCCCAAGAGCAAATCACATG+AGG | 0.644096 | 5.4:+17698744 | MS.gene028082:CDS |
| GCACCGGTACCAATCAGAAG+AGG | 0.649774 | 5.4:-17699457 | None:intergenic |
| CTTCTAGGAATGGCTGAGAG+GGG | 0.660938 | 5.4:+17699634 | MS.gene028082:CDS |
| CTATGATCATTGGAGGAGTG+TGG | 0.665613 | 5.4:+17699530 | MS.gene028082:CDS |
| GGTAAACCACCACCTACCGC+CGG | 0.669905 | 5.4:-17699094 | None:intergenic |
| GTTCTAGTGCAATGGCAATG+GGG | 0.681571 | 5.4:+17698672 | MS.gene028082:CDS |
| GCAGCCGCAATGTCAAACAT+GGG | 0.682961 | 5.4:+17699574 | MS.gene028082:CDS |
| TGTATGGCCGAGGTGCGTTG+GGG | 0.684032 | 5.4:-17699846 | None:intergenic |
| GGTTGGATGAAATGGCTCAG+TGG | 0.700595 | 5.4:+17699013 | MS.gene028082:CDS |
| GGGAGCGAGTACGTGACCGT+AGG | 0.708466 | 5.4:+17698710 | MS.gene028082:CDS |
| ACAGCATATAATAGACAACA+AGG | 0.710785 | 5.4:+17698650 | MS.gene028082:CDS |
| TGATAGTAGAATTACACCAG+AGG | 0.722676 | 5.4:-17699725 | None:intergenic |
| CGGCCATACAAAGTACCAGG+CGG | 0.753253 | 5.4:+17699859 | MS.gene028082:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTGAATTTAATAACAAAA+TGG | - | chr5.4:17698482-17698501 | None:intergenic | 15.0% |
| !!! | ATTTTTATTCTTTTCCAATT+TGG | + | chr5.4:17698181-17698200 | MS.gene028082:intron | 15.0% |
| !!! | CATTTTGTTATTAAATTCAA+TGG | + | chr5.4:17698480-17698499 | MS.gene028082:intron | 15.0% |
| !!! | TTTTTATTCTTTTCCAATTT+GGG | + | chr5.4:17698182-17698201 | MS.gene028082:intron | 15.0% |
| !! | ATCAAAATAGGTATGTATAT+AGG | - | chr5.4:17698557-17698576 | None:intergenic | 20.0% |
| !! | TCTTACTTATTTGAACTATA+GGG | + | chr5.4:17699150-17699169 | MS.gene028082:CDS | 20.0% |
| !! | TTCTTACTTATTTGAACTAT+AGG | + | chr5.4:17699149-17699168 | MS.gene028082:CDS | 20.0% |
| !!! | CTCAAATTCAATTCTTTTTT+TGG | + | chr5.4:17698510-17698529 | MS.gene028082:intron | 20.0% |
| !!! | GTTTTTTATACCTTCATTTA+CGG | + | chr5.4:17698282-17698301 | MS.gene028082:intron | 20.0% |
| ! | AAAATAGTGGTTATGTTGTT+TGG | + | chr5.4:17698951-17698970 | MS.gene028082:CDS | 25.0% |
| ! | AAAGCATAAAACAAACCTTT+GGG | - | chr5.4:17699409-17699428 | None:intergenic | 25.0% |
| ! | AAGGTATAAAAAACAGATCT+TGG | - | chr5.4:17698276-17698295 | None:intergenic | 25.0% |
| ! | AATTTATGGAGAAAAAGAGA+TGG | + | chr5.4:17700016-17700035 | MS.gene028082:CDS | 25.0% |
| ! | AGATAATCAAGAAATAGAAC+AGG | - | chr5.4:17699061-17699080 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAACTATAG+GGG | + | chr5.4:17699151-17699170 | MS.gene028082:CDS | 25.0% |
| ! | GCATAACATCAAATCAAAAT+AGG | - | chr5.4:17698569-17698588 | None:intergenic | 25.0% |
| ! | GCTTATAAGAAATACTTTGA+GGG | - | chr5.4:17699953-17699972 | None:intergenic | 25.0% |
| !! | AAATAGTGGTTATGTTGTTT+GGG | + | chr5.4:17698952-17698971 | MS.gene028082:CDS | 25.0% |
| !! | ATTAAGTTGTTTATCCAACA+AGG | - | chr5.4:17698349-17698368 | None:intergenic | 25.0% |
| !! | TATATTTGAATACGCTGTTT+TGG | + | chr5.4:17699317-17699336 | MS.gene028082:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAACAA+GGG | - | chr5.4:17698348-17698367 | None:intergenic | 25.0% |
| !!! | AAGAAGTAAACTTTTTTAGC+TGG | + | chr5.4:17698609-17698628 | MS.gene028082:intron | 25.0% |
| !!! | AGAAGTAAACTTTTTTAGCT+GGG | + | chr5.4:17698610-17698629 | MS.gene028082:intron | 25.0% |
| !!! | GTTTTGGAATCTCAATTATT+GGG | + | chr5.4:17699333-17699352 | MS.gene028082:CDS | 25.0% |
| !!! | TGTTTTGGAATCTCAATTAT+TGG | + | chr5.4:17699332-17699351 | MS.gene028082:CDS | 25.0% |
| !!! | TTTTGGTTTTTCCGTTTATA+TGG | + | chr5.4:17698879-17698898 | MS.gene028082:CDS | 25.0% |
| AAAAACCCCATGAAAACAAA+TGG | - | chr5.4:17699229-17699248 | None:intergenic | 30.0% | |
| AAAACCCCATGAAAACAAAT+GGG | - | chr5.4:17699228-17699247 | None:intergenic | 30.0% | |
| AATCCAAGTAAAGCTAACAA+AGG | - | chr5.4:17698860-17698879 | None:intergenic | 30.0% | |
| AATTCCAATCAACGTCATTT+AGG | - | chr5.4:17699297-17699316 | None:intergenic | 30.0% | |
| ACAGCATATAATAGACAACA+AGG | + | chr5.4:17698650-17698669 | MS.gene028082:CDS | 30.0% | |
| AGCAATATTGTAACCCAAAT+TGG | - | chr5.4:17698198-17698217 | None:intergenic | 30.0% | |
| CAAAGCATAAAACAAACCTT+TGG | - | chr5.4:17699410-17699429 | None:intergenic | 30.0% | |
| CAGAAATTAAACCTGAAAGA+TGG | + | chr5.4:17699257-17699276 | MS.gene028082:CDS | 30.0% | |
| CGCTTATAAGAAATACTTTG+AGG | - | chr5.4:17699954-17699973 | None:intergenic | 30.0% | |
| GAGAATTTCTTGTACTGTAT+TGG | + | chr5.4:17699778-17699797 | MS.gene028082:CDS | 30.0% | |
| TAGAAGATGAGAAAAACAAG+TGG | - | chr5.4:17698785-17698804 | None:intergenic | 30.0% | |
| TCTGATATTGCTATGATCAT+TGG | + | chr5.4:17699520-17699539 | MS.gene028082:CDS | 30.0% | |
| TCTTGATTATCTTAAGTCAG+CGG | + | chr5.4:17699069-17699088 | MS.gene028082:CDS | 30.0% | |
| TTATACCTTCATTTACGGTA+TGG | + | chr5.4:17698287-17698306 | MS.gene028082:intron | 30.0% | |
| ! | ACAACATAACCACTATTTTC+AGG | - | chr5.4:17698950-17698969 | None:intergenic | 30.0% |
| ! | CAACATAACCACTATTTTCA+GGG | - | chr5.4:17698949-17698968 | None:intergenic | 30.0% |
| ! | TATAAGAAATACTTTGAGGG+AGG | - | chr5.4:17699950-17699969 | None:intergenic | 30.0% |
| ! | TGTTTTTCTCATCTTCTATG+AGG | + | chr5.4:17698787-17698806 | MS.gene028082:CDS | 30.0% |
| ! | TTAATGAGAGAGTTTTTCCT+TGG | + | chr5.4:17698320-17698339 | MS.gene028082:intron | 30.0% |
| ! | TTCTCCATAAATTTGAGACA+AGG | - | chr5.4:17700009-17700028 | None:intergenic | 30.0% |
| !! | CATCTTTCAGGTTTAATTTC+TGG | - | chr5.4:17699259-17699278 | None:intergenic | 30.0% |
| !! | GAAAAAAGTATCCCTATAAG+AGG | - | chr5.4:17699703-17699722 | None:intergenic | 30.0% |
| !!! | GTTAGCTTTACTTGGATTTT+TGG | + | chr5.4:17698862-17698881 | MS.gene028082:CDS | 30.0% |
| !!! | TTTGTTTTATGCTTTGATCC+TGG | + | chr5.4:17699414-17699433 | MS.gene028082:CDS | 30.0% |
| AAGTAAAGCTAACAAAGGAC+CGG | - | chr5.4:17698855-17698874 | None:intergenic | 35.0% | |
| AAGTTGAACAAAATCCAAGC+TGG | + | chr5.4:17698456-17698475 | MS.gene028082:intron | 35.0% | |
| ACACAGATCAAAATTGTAGG+AGG | - | chr5.4:17699913-17699932 | None:intergenic | 35.0% | |
| ACCACACAGATCAAAATTGT+AGG | - | chr5.4:17699916-17699935 | None:intergenic | 35.0% | |
| AGAAACCATACCGTAAATGA+AGG | - | chr5.4:17698295-17698314 | None:intergenic | 35.0% | |
| CAAACCTAAATGACGTTGAT+TGG | + | chr5.4:17699290-17699309 | MS.gene028082:CDS | 35.0% | |
| CACAGATCAAAATTGTAGGA+GGG | - | chr5.4:17699912-17699931 | None:intergenic | 35.0% | |
| CCAAAGAAAAATCTTCCCAA+AGG | + | chr5.4:17699391-17699410 | MS.gene028082:CDS | 35.0% | |
| CTGGTGTAATTCTACTATCA+TGG | + | chr5.4:17699728-17699747 | MS.gene028082:CDS | 35.0% | |
| GATATTGCTATGATCATTGG+AGG | + | chr5.4:17699523-17699542 | MS.gene028082:CDS | 35.0% | |
| GATGCACATAATAATTGCTC+CGG | - | chr5.4:17699890-17699909 | None:intergenic | 35.0% | |
| GCTTTGATTACTGCTGAAAT+GGG | + | chr5.4:17698914-17698933 | MS.gene028082:CDS | 35.0% | |
| GTACTGTATTGGAATGATTC+TGG | + | chr5.4:17699789-17699808 | MS.gene028082:CDS | 35.0% | |
| TAATAACAAAATGGCCAGCT+TGG | - | chr5.4:17698473-17698492 | None:intergenic | 35.0% | |
| TACTTCTTTCCTCTTCTGAT+TGG | + | chr5.4:17699448-17699467 | MS.gene028082:CDS | 35.0% | |
| TATAGGGGTTTAACCATTGT+TGG | + | chr5.4:17699166-17699185 | MS.gene028082:CDS | 35.0% | |
| TCAGGAACACTCCATATAAA+CGG | - | chr5.4:17698893-17698912 | None:intergenic | 35.0% | |
| TGATAGTAGAATTACACCAG+AGG | - | chr5.4:17699728-17699747 | None:intergenic | 35.0% | |
| ! | ACCTAGAGTATTTGCAACAT+GGG | + | chr5.4:17699114-17699133 | MS.gene028082:CDS | 35.0% |
| ! | AGCTTTGATTACTGCTGAAA+TGG | + | chr5.4:17698913-17698932 | MS.gene028082:CDS | 35.0% |
| ! | TACCTAGAGTATTTGCAACA+TGG | + | chr5.4:17699113-17699132 | MS.gene028082:CDS | 35.0% |
| !! | CCTTTGGGAAGATTTTTCTT+TGG | - | chr5.4:17699394-17699413 | None:intergenic | 35.0% |
| !! | CTTCTCCCATTTGTTTTCAT+GGG | + | chr5.4:17699220-17699239 | MS.gene028082:CDS | 35.0% |
| !! | TCCTACAATTTTGATCTGTG+TGG | + | chr5.4:17699912-17699931 | MS.gene028082:CDS | 35.0% |
| !! | TTCTCCCATTTGTTTTCATG+GGG | + | chr5.4:17699221-17699240 | MS.gene028082:CDS | 35.0% |
| AACAGCAACAAGTCCAACAA+TGG | - | chr5.4:17699182-17699201 | None:intergenic | 40.0% | |
| ACAGTATCCTCAACACCAAA+AGG | - | chr5.4:17698824-17698843 | None:intergenic | 40.0% | |
| ACCATGTTCCCTGAAAATAG+TGG | + | chr5.4:17698938-17698957 | MS.gene028082:CDS | 40.0% | |
| CATTCCCATGTTTGACATTG+CGG | - | chr5.4:17699581-17699600 | None:intergenic | 40.0% | |
| GTAAGAGTCGCTACTCATTT+CGG | - | chr5.4:17699611-17699630 | None:intergenic | 40.0% | |
| GTCTCAACAAACCATCTTTC+AGG | - | chr5.4:17699271-17699290 | None:intergenic | 40.0% | |
| TCAGCAGTAATCAAAGCTTC+AGG | - | chr5.4:17698911-17698930 | None:intergenic | 40.0% | |
| TCCTCTCCATTGACAAAATC+AGG | - | chr5.4:17700069-17700088 | None:intergenic | 40.0% | |
| TTATCTTAAGTCAGCGGTTC+CGG | + | chr5.4:17699075-17699094 | MS.gene028082:CDS | 40.0% | |
| TTGACAAAATCAGGTAGCTC+AGG | - | chr5.4:17700060-17700079 | None:intergenic | 40.0% | |
| TTTCCTCTTCTGATTGGTAC+CGG | + | chr5.4:17699454-17699473 | MS.gene028082:CDS | 40.0% | |
| ! | ACAACAAGGTTCTAGTGCAA+TGG | + | chr5.4:17698664-17698683 | MS.gene028082:CDS | 40.0% |
| ! | ACCTGATTTTGTCAATGGAG+AGG | + | chr5.4:17700065-17700084 | MS.gene028082:CDS | 40.0% |
| ! | ATCTTCTATGAGGTATCAGG+TGG | + | chr5.4:17698797-17698816 | MS.gene028082:CDS | 40.0% |
| ! | CCTAGAGTATTTGCAACATG+GGG | + | chr5.4:17699115-17699134 | MS.gene028082:CDS | 40.0% |
| ! | CTCATCTTCTATGAGGTATC+AGG | + | chr5.4:17698794-17698813 | MS.gene028082:CDS | 40.0% |
| ! | GAGCTACCTGATTTTGTCAA+TGG | + | chr5.4:17700060-17700079 | MS.gene028082:CDS | 40.0% |
| ! | GCAGCCTTGTCTCAAATTTA+TGG | + | chr5.4:17700002-17700021 | MS.gene028082:CDS | 40.0% |
| ! | TCTTATAAGCGTCGTTGCTA+TGG | + | chr5.4:17699963-17699982 | MS.gene028082:CDS | 40.0% |
| ! | TTTTTCCTTGGTACCCTTGT+TGG | + | chr5.4:17698332-17698351 | MS.gene028082:intron | 40.0% |
| !! | ACCACTATTTTCAGGGAACA+TGG | - | chr5.4:17698942-17698961 | None:intergenic | 40.0% |
| !! | GCTTCTCCCATTTGTTTTCA+TGG | + | chr5.4:17699219-17699238 | MS.gene028082:CDS | 40.0% |
| !! | GGACTTGTTGCTGTTTGTTT+AGG | + | chr5.4:17699187-17699206 | MS.gene028082:CDS | 40.0% |
| !! | GGTCCTTTGTTAGCTTTACT+TGG | + | chr5.4:17698854-17698873 | MS.gene028082:CDS | 40.0% |
| !! | GTCTGCTTTAGGTCCTTTTT+GGG | + | chr5.4:17698979-17698998 | MS.gene028082:CDS | 40.0% |
| !! | TCCTCATGTGATTTGCTCTT+GGG | - | chr5.4:17698748-17698767 | None:intergenic | 40.0% |
| !! | TCTGCTTTAGGTCCTTTTTG+GGG | + | chr5.4:17698980-17698999 | MS.gene028082:CDS | 40.0% |
| !! | TTCACCAGCAAGAGTACTTA+TGG | - | chr5.4:17699362-17699381 | None:intergenic | 40.0% |
| !! | TTCCTCATGTGATTTGCTCT+TGG | - | chr5.4:17698749-17698768 | None:intergenic | 40.0% |
| !! | TTTATCCAACAAGGGTACCA+AGG | - | chr5.4:17698340-17698359 | None:intergenic | 40.0% |
| CCCCATGTTGCAAATACTCT+AGG | - | chr5.4:17699118-17699137 | None:intergenic | 45.0% | |
| CTATGATCATTGGAGGAGTG+TGG | + | chr5.4:17699530-17699549 | MS.gene028082:CDS | 45.0% | |
| GACCTCTTGGTGAAAAACTC+TGG | - | chr5.4:17699667-17699686 | None:intergenic | 45.0% | |
| GACTCCATAAGTACTCTTGC+TGG | + | chr5.4:17699355-17699374 | MS.gene028082:CDS | 45.0% | |
| GTCACGGAACACCTCTTATA+GGG | + | chr5.4:17699689-17699708 | MS.gene028082:CDS | 45.0% | |
| GTTCTAGTGCAATGGCAATG+GGG | + | chr5.4:17698672-17698691 | MS.gene028082:CDS | 45.0% | |
| TGCTTTGATCCTGGTTGTTG+TGG | + | chr5.4:17699423-17699442 | MS.gene028082:CDS | 45.0% | |
| TGGAGAGGACACTCAATCTT+TGG | + | chr5.4:17700080-17700099 | MS.gene028082:CDS | 45.0% | |
| TTAGCTGGGTGCAGAAATTG+AGG | + | chr5.4:17698624-17698643 | MS.gene028082:intron | 45.0% | |
| TTCAGCAGGGTTGGATGAAA+TGG | + | chr5.4:17699005-17699024 | MS.gene028082:CDS | 45.0% | |
| TTCTAGTGCAATGGCAATGG+GGG | + | chr5.4:17698673-17698692 | MS.gene028082:CDS | 45.0% | |
| ! | AGAAGTATGCCACAACAACC+AGG | - | chr5.4:17699435-17699454 | None:intergenic | 45.0% |
| ! | AGGTTCTAGTGCAATGGCAA+TGG | + | chr5.4:17698670-17698689 | MS.gene028082:CDS | 45.0% |
| ! | CTCTTACCAGCTTCTAGGAA+TGG | + | chr5.4:17699624-17699643 | MS.gene028082:CDS | 45.0% |
| ! | GGTTCTAGTGCAATGGCAAT+GGG | + | chr5.4:17698671-17698690 | MS.gene028082:CDS | 45.0% |
| ! | GTTTGGGTTTCGTCTGCTTT+AGG | + | chr5.4:17698968-17698987 | MS.gene028082:CDS | 45.0% |
| ! | TGCCAGAGTTTTTCACCAAG+AGG | + | chr5.4:17699662-17699681 | MS.gene028082:CDS | 45.0% |
| !! | ATGTGATTTGCTCTTGGGGA+AGG | - | chr5.4:17698743-17698762 | None:intergenic | 45.0% |
| !! | CCTCATGTGATTTGCTCTTG+GGG | - | chr5.4:17698747-17698766 | None:intergenic | 45.0% |
| !! | CGTCTGCTTTAGGTCCTTTT+TGG | + | chr5.4:17698978-17698997 | MS.gene028082:CDS | 45.0% |
| !! | CTGCTTTAGGTCCTTTTTGG+GGG | + | chr5.4:17698981-17699000 | MS.gene028082:CDS | 45.0% |
| !!! | GGGATACTTTTTTCAGCCTC+TGG | + | chr5.4:17699709-17699728 | MS.gene028082:CDS | 45.0% |
| AGCGACTCTTACCAGCTTCT+AGG | + | chr5.4:17699619-17699638 | MS.gene028082:CDS | 50.0% | |
| CCCCAAGAGCAAATCACATG+AGG | + | chr5.4:17698744-17698763 | MS.gene028082:CDS | 50.0% | |
| CGTCACGGAACACCTCTTAT+AGG | + | chr5.4:17699688-17699707 | MS.gene028082:CDS | 50.0% | |
| GAGGATACTGTGAAAGCAGC+CGG | + | chr5.4:17698833-17698852 | MS.gene028082:CDS | 50.0% | |
| GCAGCCGCAATGTCAAACAT+GGG | + | chr5.4:17699574-17699593 | MS.gene028082:CDS | 50.0% | |
| GGTTGGATGAAATGGCTCAG+TGG | + | chr5.4:17699013-17699032 | MS.gene028082:CDS | 50.0% | |
| GTTCCGCCTGGTACTTTGTA+TGG | - | chr5.4:17699865-17699884 | None:intergenic | 50.0% | |
| TCTCAGCCATTCCTAGAAGC+TGG | - | chr5.4:17699633-17699652 | None:intergenic | 50.0% | |
| TGCAGCCGCAATGTCAAACA+TGG | + | chr5.4:17699573-17699592 | MS.gene028082:CDS | 50.0% | |
| TTCACCAAGAGGTCTCGTCA+CGG | + | chr5.4:17699673-17699692 | MS.gene028082:CDS | 50.0% | |
| ! | AGCTTCTAGGAATGGCTGAG+AGG | + | chr5.4:17699632-17699651 | MS.gene028082:CDS | 50.0% |
| ! | CTTCTAGGAATGGCTGAGAG+GGG | + | chr5.4:17699634-17699653 | MS.gene028082:CDS | 50.0% |
| ! | GCTTCTAGGAATGGCTGAGA+GGG | + | chr5.4:17699633-17699652 | MS.gene028082:CDS | 50.0% |
| ! | TTGGAGGAGTGTGGTTGAGA+TGG | + | chr5.4:17699539-17699558 | MS.gene028082:CDS | 50.0% |
| !! | CCTTTTTGGGGGTTTCAGCA+GGG | + | chr5.4:17698992-17699011 | MS.gene028082:CDS | 50.0% |
| !! | GAGGTATCAGGTGGACCTTT+TGG | + | chr5.4:17698806-17698825 | MS.gene028082:CDS | 50.0% |
| !! | TCCTTTTTGGGGGTTTCAGC+AGG | + | chr5.4:17698991-17699010 | MS.gene028082:CDS | 50.0% |
| !! | TGGGGAAGGCATTTCACCTA+CGG | - | chr5.4:17698729-17698748 | None:intergenic | 50.0% |
| !!! | AGGTGGACCTTTTGGTGTTG+AGG | + | chr5.4:17698814-17698833 | MS.gene028082:CDS | 50.0% |
| AGCGTCGTTGCTATGGCGAT+TGG | + | chr5.4:17699970-17699989 | MS.gene028082:CDS | 55.0% | |
| ATGGCAATGGGGGAGTTCAC+CGG | + | chr5.4:17698683-17698702 | MS.gene028082:CDS | 55.0% | |
| CCCTGCTGAAACCCCCAAAA+AGG | - | chr5.4:17698995-17699014 | None:intergenic | 55.0% | |
| CCTGGTACTTTGTATGGCCG+AGG | - | chr5.4:17699859-17699878 | None:intergenic | 55.0% | |
| TCAAACACCCCAACGCACCT+CGG | + | chr5.4:17699839-17699858 | MS.gene028082:CDS | 55.0% | |
| TCTTAAGTCAGCGGTTCCGG+CGG | + | chr5.4:17699078-17699097 | MS.gene028082:CDS | 55.0% | |
| TGTTCCGTGACGAGACCTCT+TGG | - | chr5.4:17699680-17699699 | None:intergenic | 55.0% | |
| TTGTATGGCCGAGGTGCGTT+GGG | - | chr5.4:17699850-17699869 | None:intergenic | 55.0% | |
| TTTGGGGGTTTCAGCAGGGT+TGG | + | chr5.4:17698996-17699015 | MS.gene028082:CDS | 55.0% | |
| TTTGTATGGCCGAGGTGCGT+TGG | - | chr5.4:17699851-17699870 | None:intergenic | 55.0% | |
| ! | AAAGTACCAGGCGGAACGAC+CGG | + | chr5.4:17699868-17699887 | MS.gene028082:CDS | 55.0% |
| ! | CCTCGGCCATACAAAGTACC+AGG | + | chr5.4:17699856-17699875 | MS.gene028082:CDS | 55.0% |
| ! | CGGCCATACAAAGTACCAGG+CGG | + | chr5.4:17699859-17699878 | MS.gene028082:CDS | 55.0% |
| ! | GAGGAGTGTGGTTGAGATGG+TGG | + | chr5.4:17699542-17699561 | MS.gene028082:CDS | 55.0% |
| ! | GCACCGGTACCAATCAGAAG+AGG | - | chr5.4:17699460-17699479 | None:intergenic | 55.0% |
| ! | GTGGTTGAGATGGTGGCTTC+AGG | + | chr5.4:17699549-17699568 | MS.gene028082:CDS | 55.0% |
| !! | GATTGGTACCGGTGCTGTTC+CGG | + | chr5.4:17699465-17699484 | MS.gene028082:CDS | 55.0% |
| GGTAAACCACCACCTACCGC+CGG | - | chr5.4:17699097-17699116 | None:intergenic | 60.0% | |
| GTCCACAACTCGCGCTGAAC+CGG | - | chr5.4:17699487-17699506 | None:intergenic | 60.0% | |
| TACGGTCACGTACTCGCTCC+CGG | - | chr5.4:17698711-17698730 | None:intergenic | 60.0% | |
| TGGCAATGGGGGAGTTCACC+GGG | + | chr5.4:17698684-17698703 | MS.gene028082:CDS | 60.0% | |
| TGTATGGCCGAGGTGCGTTG+GGG | - | chr5.4:17699849-17699868 | None:intergenic | 60.0% | |
| TTCCGGTTCAGCGCGAGTTG+TGG | + | chr5.4:17699482-17699501 | MS.gene028082:CDS | 60.0% | |
| ! | AGCGCGAGTTGTGGACTGAC+GGG | + | chr5.4:17699491-17699510 | MS.gene028082:CDS | 60.0% |
| ! | CAGCGCGAGTTGTGGACTGA+CGG | + | chr5.4:17699490-17699509 | MS.gene028082:CDS | 60.0% |
| AAGTCAGCGGTTCCGGCGGT+AGG | + | chr5.4:17699082-17699101 | MS.gene028082:CDS | 65.0% | |
| ATGGGGGAGTTCACCGGGAC+CGG | + | chr5.4:17698689-17698708 | MS.gene028082:CDS | 65.0% | |
| ATTGCTCCGGTCGTTCCGCC+TGG | - | chr5.4:17699877-17699896 | None:intergenic | 65.0% | |
| GCGCTGAACCGGAACAGCAC+CGG | - | chr5.4:17699476-17699495 | None:intergenic | 65.0% | |
| GGGAGCGAGTACGTGACCGT+AGG | + | chr5.4:17698710-17698729 | MS.gene028082:CDS | 65.0% | |
| CACGTACTCGCTCCCGGTCC+CGG | - | chr5.4:17698705-17698724 | None:intergenic | 70.0% | |
| TCAGCGGTTCCGGCGGTAGG+TGG | + | chr5.4:17699085-17699104 | MS.gene028082:CDS | 70.0% | |
| TGGGGGAGTTCACCGGGACC+GGG | + | chr5.4:17698690-17698709 | MS.gene028082:CDS | 70.0% | |
| GCGGTTCCGGCGGTAGGTGG+TGG | + | chr5.4:17699088-17699107 | MS.gene028082:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17698153 | 17700110 | 17698153 | ID=MS.gene028082 |
| chr5.4 | mRNA | 17698153 | 17700110 | 17698153 | ID=MS.gene028082.t1;Parent=MS.gene028082 |
| chr5.4 | exon | 17698153 | 17698155 | 17698153 | ID=MS.gene028082.t1.exon1;Parent=MS.gene028082.t1 |
| chr5.4 | CDS | 17698153 | 17698155 | 17698153 | ID=cds.MS.gene028082.t1;Parent=MS.gene028082.t1 |
| chr5.4 | exon | 17698638 | 17700110 | 17698638 | ID=MS.gene028082.t1.exon2;Parent=MS.gene028082.t1 |
| chr5.4 | CDS | 17698638 | 17700110 | 17698638 | ID=cds.MS.gene028082.t1;Parent=MS.gene028082.t1 |
| Gene Sequence |
| Protein sequence |
