Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22262.t1 | XP_024630487.1 | 98.7 | 463 | 6 | 0 | 1 | 463 | 1 | 463 | 5.00E-261 | 909.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22262.t1 | Q9C6S5 | 70.8 | 462 | 132 | 2 | 5 | 463 | 34 | 495 | 2.9e-196 | 686.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22262.t1 | A0A396IMD5 | 98.7 | 463 | 6 | 0 | 1 | 463 | 1 | 463 | 3.6e-261 | 909.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22262 | MS.gene028082 | PPI |
| MS.gene22262 | MS.gene72828 | PPI |
| MS.gene22262 | MS.gene046947 | PPI |
| MS.gene22262 | MS.gene68906 | PPI |
| MS.gene22262 | MS.gene070082 | PPI |
| MS.gene22262 | MS.gene039946 | PPI |
| MS.gene22262 | MS.gene00289 | PPI |
| MS.gene22262 | MS.gene024967 | PPI |
| MS.gene22262 | MS.gene52398 | PPI |
| MS.gene22262 | MS.gene40531 | PPI |
| MS.gene22262 | MS.gene92363 | PPI |
| MS.gene22262 | MS.gene84987 | PPI |
| MS.gene22262 | MS.gene004548 | PPI |
| MS.gene22262 | MS.gene019112 | PPI |
| MS.gene028082 | MS.gene22262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22262.t1 | MTR_0031s0060 | 93.172 | 454 | 7 | 1 | 9 | 462 | 130 | 559 | 0.0 | 832 |
| MS.gene22262.t1 | MTR_5g026780 | 79.526 | 464 | 92 | 2 | 1 | 463 | 30 | 491 | 0.0 | 756 |
| MS.gene22262.t1 | MTR_5g026780 | 79.526 | 464 | 92 | 2 | 1 | 463 | 14 | 475 | 0.0 | 755 |
| MS.gene22262.t1 | MTR_1g112950 | 71.397 | 451 | 129 | 0 | 2 | 452 | 9 | 459 | 0.0 | 666 |
| MS.gene22262.t1 | MTR_5g005160 | 54.897 | 439 | 196 | 2 | 18 | 455 | 9 | 446 | 2.99e-168 | 483 |
| MS.gene22262.t1 | MTR_8g085630 | 48.966 | 435 | 219 | 2 | 13 | 444 | 34 | 468 | 1.04e-149 | 435 |
| MS.gene22262.t1 | MTR_5g064750 | 47.846 | 441 | 227 | 2 | 14 | 451 | 20 | 460 | 8.39e-144 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22262.t1 | AT1G31830 | 70.779 | 462 | 132 | 2 | 5 | 463 | 34 | 495 | 0.0 | 688 |
| MS.gene22262.t1 | AT1G31830 | 70.779 | 462 | 132 | 2 | 5 | 463 | 18 | 479 | 0.0 | 687 |
| MS.gene22262.t1 | AT5G05630 | 70.460 | 457 | 130 | 2 | 1 | 452 | 32 | 488 | 0.0 | 665 |
| MS.gene22262.t1 | AT1G31820 | 63.755 | 458 | 164 | 1 | 8 | 463 | 25 | 482 | 0.0 | 603 |
| MS.gene22262.t1 | AT3G19553 | 57.944 | 428 | 178 | 2 | 18 | 443 | 21 | 448 | 5.20e-177 | 504 |
| MS.gene22262.t1 | AT3G13620 | 45.770 | 461 | 244 | 3 | 5 | 459 | 12 | 472 | 5.47e-143 | 418 |
Find 108 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATTTCTTGTACTCTTT+TGG | 0.164145 | 3.4:-38378801 | MS.gene22262:CDS |
| GGTCCTCTCTTAACCCTTCT+TGG | 0.208029 | 3.4:-38379722 | MS.gene22262:CDS |
| ATCAGCTTTAGGACCTTATT+GGG | 0.221976 | 3.4:-38379597 | MS.gene22262:CDS |
| TCAGGGATACTCCATATAAA+TGG | 0.230173 | 3.4:+38379686 | None:intergenic |
| GTTTGGGTTTCATCAGCTTT+AGG | 0.243950 | 3.4:-38379608 | MS.gene22262:CDS |
| TGCAGCTGCGGTGTCGAATA+TGG | 0.255598 | 3.4:-38379006 | MS.gene22262:CDS |
| CATCAGCTTTAGGACCTTAT+TGG | 0.283142 | 3.4:-38379598 | MS.gene22262:CDS |
| GCCGACTCATTTCAGCTTCT+AGG | 0.293315 | 3.4:-38378960 | MS.gene22262:CDS |
| AAAACAGTGGTTATGTTGTT+TGG | 0.310011 | 3.4:-38379625 | MS.gene22262:CDS |
| CGCTACGGTACGCCTATTAT+AGG | 0.318281 | 3.4:-38378891 | MS.gene22262:CDS |
| TCCAACAAGGTTGGATGAAA+TGG | 0.322758 | 3.4:-38379571 | MS.gene22262:CDS |
| TCCATTTCATCCAACCTTGT+TGG | 0.334475 | 3.4:+38379570 | None:intergenic |
| TGGATTTAAAAGATATTGAT+TGG | 0.335722 | 3.4:-38379289 | MS.gene22262:CDS |
| AAATGCATCAAGGCCTTATA+AGG | 0.337429 | 3.4:-38378730 | MS.gene22262:CDS |
| TCAGCAGTGATCAAGGCTTC+AGG | 0.339235 | 3.4:+38379668 | None:intergenic |
| TCCACTTCAACCCATCTTGA+TGG | 0.351473 | 3.4:+38379308 | None:intergenic |
| TCAGATATTGCTATGATCAT+TGG | 0.351597 | 3.4:-38379059 | MS.gene22262:CDS |
| AAGTGGCTGGCCTAGAGTTT+TGG | 0.352088 | 3.4:-38379471 | MS.gene22262:CDS |
| TTATAAGGCCTTGATGCATT+TGG | 0.365218 | 3.4:+38378732 | None:intergenic |
| TTGGTTTGTTGGTGTGGTAC+TGG | 0.372779 | 3.4:+38379838 | None:intergenic |
| AAAGCATAAAACAAACCTTT+AGG | 0.375897 | 3.4:+38379173 | None:intergenic |
| ACCTACCTGATCTGGACAAT+GGG | 0.376715 | 3.4:-38378518 | MS.gene22262:CDS |
| CATCTTGATGGTTCCAACTT+AGG | 0.382965 | 3.4:+38379320 | None:intergenic |
| ATTTATTTCAATTCCTAAGT+TGG | 0.384356 | 3.4:-38379333 | MS.gene22262:CDS |
| TATAGAGGTTTAACTATTGT+TGG | 0.385829 | 3.4:-38379410 | MS.gene22262:CDS |
| TTCCAGTGGACCGCGCGGCT+TGG | 0.391262 | 3.4:-38379097 | MS.gene22262:CDS |
| GCTACGGTACGCCTATTATA+GGG | 0.396902 | 3.4:-38378890 | MS.gene22262:CDS |
| GAAGTGTCTGGAGGACCATT+TGG | 0.412620 | 3.4:-38379770 | MS.gene22262:CDS |
| CGTACCGTAGCGCGACCTTT+TGG | 0.412813 | 3.4:+38378902 | None:intergenic |
| AAACAGTGGTTATGTTGTTT+GGG | 0.414591 | 3.4:-38379624 | MS.gene22262:CDS |
| CTCTCCCCATTGTCCAGATC+AGG | 0.418939 | 3.4:+38378513 | None:intergenic |
| ATCCCACCTACAATATTGAT+TGG | 0.423497 | 3.4:-38378672 | MS.gene22262:CDS |
| AGCCTTGATCACTGCTGAAA+TGG | 0.423748 | 3.4:-38379663 | MS.gene22262:CDS |
| AGATAATCAAGAAACAAAAC+TGG | 0.424322 | 3.4:+38379518 | None:intergenic |
| ATCATCTTCTATGAAGTGTC+TGG | 0.425953 | 3.4:-38379782 | MS.gene22262:CDS |
| CTCCAAGCCGCGCGGTCCAC+TGG | 0.426120 | 3.4:+38379095 | None:intergenic |
| CCTTGTTGGAAACCCCAATA+AGG | 0.431314 | 3.4:+38379584 | None:intergenic |
| ACAAAACCAATCAATATTGT+AGG | 0.447741 | 3.4:+38378666 | None:intergenic |
| TCCCATTTCAGCAGTGATCA+AGG | 0.449929 | 3.4:+38379661 | None:intergenic |
| GGCCAGCCACTTTCTAAAGC+TGG | 0.452471 | 3.4:+38379482 | None:intergenic |
| GATTCTATAAGTACTCTTGT+TGG | 0.458007 | 3.4:-38379224 | MS.gene22262:CDS |
| CAGGGATACTCCATATAAAT+GGG | 0.460294 | 3.4:+38379687 | None:intergenic |
| CTATGATCATTGGTGGAGCT+TGG | 0.461415 | 3.4:-38379049 | MS.gene22262:CDS |
| CTCTCCACAAATTTGAGACA+AGG | 0.466334 | 3.4:+38378573 | None:intergenic |
| CCGACTCATTTCAGCTTCTA+GGG | 0.471267 | 3.4:-38378959 | MS.gene22262:CDS |
| ATAAATCCCATAACAACAAA+AGG | 0.475766 | 3.4:+38379350 | None:intergenic |
| TAGTCCTGACCTACCTGATC+TGG | 0.476702 | 3.4:-38378526 | MS.gene22262:CDS |
| CTTGATTTGGTTTGTTGGTG+TGG | 0.478422 | 3.4:+38379832 | None:intergenic |
| GCCTTGATCACTGCTGAAAT+GGG | 0.479371 | 3.4:-38379662 | MS.gene22262:CDS |
| ACTATTCCAGCTTTAGAAAG+TGG | 0.483127 | 3.4:-38379488 | MS.gene22262:CDS |
| GCAGCCTTGTCTCAAATTTG+TGG | 0.484308 | 3.4:-38378577 | MS.gene22262:CDS |
| TGCCTGAGTTCTTTACCAAA+AGG | 0.486374 | 3.4:-38378917 | MS.gene22262:CDS |
| ATCAAGGCCTTATAAGGTAC+CGG | 0.487574 | 3.4:-38378724 | MS.gene22262:CDS |
| TTGTCCAGATCAGGTAGGTC+AGG | 0.487753 | 3.4:+38378522 | None:intergenic |
| CCTAATGTTGCCAAAACTCT+AGG | 0.494283 | 3.4:+38379461 | None:intergenic |
| TTCCAGCTTTAGAAAGTGGC+TGG | 0.498721 | 3.4:-38379484 | MS.gene22262:CDS |
| GACCGCGCGGCTTGGAGTGA+CGG | 0.505316 | 3.4:-38379089 | MS.gene22262:CDS |
| CCTTATTGGGGTTTCCAACA+AGG | 0.506446 | 3.4:-38379584 | MS.gene22262:CDS |
| CCAAGGAAAACACTTCCTAA+AGG | 0.513941 | 3.4:-38379188 | MS.gene22262:CDS |
| AGTGTCATTGCTATGGTGAT+TGG | 0.514324 | 3.4:-38378609 | MS.gene22262:CDS |
| GATATTGCTATGATCATTGG+TGG | 0.514890 | 3.4:-38379056 | MS.gene22262:CDS |
| CTCATTTCAGCTTCTAGGGA+TGG | 0.515121 | 3.4:-38378955 | MS.gene22262:CDS |
| CAGCAGTGATCAAGGCTTCA+GGG | 0.515674 | 3.4:+38379669 | None:intergenic |
| GCGGTCCACTGGAACCGCGC+CGG | 0.517039 | 3.4:+38379106 | None:intergenic |
| ATTGGGGTTTCCAACAAGGT+TGG | 0.521088 | 3.4:-38379580 | MS.gene22262:CDS |
| GCAGCTGCGGTGTCGAATAT+GGG | 0.523410 | 3.4:-38379005 | MS.gene22262:CDS |
| TTGGTGGAGCTTGGTTGAGA+TGG | 0.527133 | 3.4:-38379040 | MS.gene22262:CDS |
| TGTTATAAGTGTCATTGCTA+TGG | 0.529506 | 3.4:-38378616 | MS.gene22262:CDS |
| TGGCACCGGCGCGGTTCCAG+TGG | 0.532048 | 3.4:-38379111 | MS.gene22262:CDS |
| AAACCAATCAATATTGTAGG+TGG | 0.533397 | 3.4:+38378669 | None:intergenic |
| GCTTCTAGGGATGGCTGAGA+GGG | 0.533973 | 3.4:-38378946 | MS.gene22262:CDS |
| ACCGCGCGGCTTGGAGTGAC+GGG | 0.534962 | 3.4:-38379088 | MS.gene22262:CDS |
| GTGGAGCTTGGTTGAGATGG+TGG | 0.535569 | 3.4:-38379037 | MS.gene22262:CDS |
| GGAAAACTATGAATCCAAGA+AGG | 0.537053 | 3.4:+38379708 | None:intergenic |
| ACTGCATCCTCTGAACCAAA+TGG | 0.544541 | 3.4:+38379755 | None:intergenic |
| TTGGTGAAGTTGAAAATCCA+AGG | 0.544668 | 3.4:-38379205 | MS.gene22262:CDS |
| TGGAGGACCATTTGGTTCAG+AGG | 0.551347 | 3.4:-38379762 | MS.gene22262:CDS |
| TAAGTTGGAACCATCAAGAT+GGG | 0.561659 | 3.4:-38379318 | MS.gene22262:CDS |
| GAGGATGCAGTAAAAGCAGC+TGG | 0.564248 | 3.4:-38379743 | MS.gene22262:CDS |
| ACCATCAAGATGGGTTGAAG+TGG | 0.565642 | 3.4:-38379309 | MS.gene22262:CDS |
| GGTTGGATGAAATGGATTAG+TGG | 0.567663 | 3.4:-38379563 | MS.gene22262:CDS |
| AATTTGTGGAGAGAAAGAAA+TGG | 0.574720 | 3.4:-38378563 | MS.gene22262:CDS |
| TGGGGAGAGCACACAAACAT+TGG | 0.574767 | 3.4:-38378499 | MS.gene22262:CDS |
| CTAAGTTGGAACCATCAAGA+TGG | 0.579540 | 3.4:-38379319 | MS.gene22262:CDS |
| TTTGTTGGTGTGGTACTGGT+AGG | 0.580564 | 3.4:+38379842 | None:intergenic |
| TTTACCAAAAGGTCGCGCTA+CGG | 0.586063 | 3.4:-38378906 | MS.gene22262:CDS |
| CCCTAGAAGCTGAAATGAGT+CGG | 0.588600 | 3.4:+38378959 | None:intergenic |
| GTGGCTTAATGCTGCAGCTG+CGG | 0.592462 | 3.4:-38379018 | MS.gene22262:CDS |
| GACCTACCTGATCTGGACAA+TGG | 0.594367 | 3.4:-38378519 | MS.gene22262:CDS |
| AGCTTCTAGGGATGGCTGAG+AGG | 0.595536 | 3.4:-38378947 | MS.gene22262:CDS |
| TAGAAGATGATGAAGATGAG+AGG | 0.601071 | 3.4:+38379794 | None:intergenic |
| TCAGCTTTAGGACCTTATTG+GGG | 0.602003 | 3.4:-38379596 | MS.gene22262:CDS |
| TCAAGGCCTTATAAGGTACC+GGG | 0.605703 | 3.4:-38378723 | MS.gene22262:CDS |
| AACCAATCAATATTGTAGGT+GGG | 0.606006 | 3.4:+38378670 | None:intergenic |
| GAAAACTATGAATCCAAGAA+GGG | 0.606263 | 3.4:+38379709 | None:intergenic |
| ATCTTCTATGAAGTGTCTGG+AGG | 0.631099 | 3.4:-38379779 | MS.gene22262:CDS |
| CGCGGTTCCAGTGGACCGCG+CGG | 0.639341 | 3.4:-38379102 | MS.gene22262:CDS |
| AATCCAAGAAGGGTTAAGAG+AGG | 0.667612 | 3.4:+38379719 | None:intergenic |
| CTTCTAGGGATGGCTGAGAG+GGG | 0.668163 | 3.4:-38378945 | MS.gene22262:CDS |
| AAGGCCTTATAAGGTACCGG+GGG | 0.671895 | 3.4:-38378721 | MS.gene22262:CDS |
| TGAAAGTAAAATCACACCGG+AGG | 0.691386 | 3.4:+38378854 | None:intergenic |
| CCATGAAAGTAAAATCACAC+CGG | 0.697705 | 3.4:+38378851 | None:intergenic |
| CCCCATTGTCCAGATCAGGT+AGG | 0.702852 | 3.4:+38378517 | None:intergenic |
| ACCCGTCACTCCAAGCCGCG+CGG | 0.707480 | 3.4:+38379087 | None:intergenic |
| CAAGGCCTTATAAGGTACCG+GGG | 0.713763 | 3.4:-38378722 | MS.gene22262:CDS |
| CCTACCTGATCTGGACAATG+GGG | 0.745924 | 3.4:-38378517 | MS.gene22262:CDS |
| ACAATGTTCCCTGAAAACAG+TGG | 0.765904 | 3.4:-38379638 | MS.gene22262:CDS |
| AGGCCTTATAAGGTACCGGG+GGG | 0.789499 | 3.4:-38378720 | MS.gene22262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTCAATTCCTAAGT+TGG | - | chr3.4:38379018-38379037 | MS.gene22262:CDS | 20.0% |
| !! | TGGATTTAAAAGATATTGAT+TGG | - | chr3.4:38379062-38379081 | MS.gene22262:CDS | 20.0% |
| !!! | AATATTGATTGGTTTTGTAT+TGG | - | chr3.4:38379690-38379709 | MS.gene22262:CDS | 20.0% |
| !!! | CTAACTATTTTGAATTATAG+AGG | - | chr3.4:38378926-38378945 | MS.gene22262:CDS | 20.0% |
| !!! | GAATTGAAATTTTCTTGATT+TGG | + | chr3.4:38378535-38378554 | None:intergenic | 20.0% |
| !!! | TATTATAGGGATACTTTTTT+CGG | - | chr3.4:38379474-38379493 | MS.gene22262:CDS | 20.0% |
| !!! | TGTATTTGAATACTCTTTTT+TGG | - | chr3.4:38379089-38379108 | MS.gene22262:CDS | 20.0% |
| !!! | TTTGTTTTATGCTTTGATTT+TGG | - | chr3.4:38379186-38379205 | MS.gene22262:CDS | 20.0% |
| !!! | TTTTTGGAATCTTAACTATT+GGG | - | chr3.4:38379105-38379124 | MS.gene22262:CDS | 20.0% |
| !!! | TTTTTTGGAATCTTAACTAT+TGG | - | chr3.4:38379104-38379123 | MS.gene22262:CDS | 20.0% |
| ! | AAAGCATAAAACAAACCTTT+AGG | + | chr3.4:38379181-38379200 | None:intergenic | 25.0% |
| ! | ACAAAACCAATCAATATTGT+AGG | + | chr3.4:38379688-38379707 | None:intergenic | 25.0% |
| ! | AGATAATCAAGAAACAAAAC+TGG | + | chr3.4:38378836-38378855 | None:intergenic | 25.0% |
| ! | ATAAATCCCATAACAACAAA+AGG | + | chr3.4:38379004-38379023 | None:intergenic | 25.0% |
| ! | TATAGAGGTTTAACTATTGT+TGG | - | chr3.4:38378941-38378960 | MS.gene22262:CDS | 25.0% |
| ! | TTAAAAAACCAAATGCATCA+AGG | - | chr3.4:38379611-38379630 | MS.gene22262:CDS | 25.0% |
| !! | GAAAATTTCTTGTACTCTTT+TGG | - | chr3.4:38379550-38379569 | MS.gene22262:CDS | 25.0% |
| !! | TCATAGTTTTCCCATTTATA+TGG | - | chr3.4:38378654-38378673 | MS.gene22262:CDS | 25.0% |
| !!! | ATTTTCTTGATTTGGTTTGT+TGG | + | chr3.4:38378527-38378546 | None:intergenic | 25.0% |
| !!! | GAAAAAAGTATCCCTATAAT+AGG | + | chr3.4:38379475-38379494 | None:intergenic | 25.0% |
| !!! | TTACTTCCTTTTGTTGTTAT+GGG | - | chr3.4:38378995-38379014 | MS.gene22262:CDS | 25.0% |
| AAAACAGTGGTTATGTTGTT+TGG | - | chr3.4:38378726-38378745 | MS.gene22262:CDS | 30.0% | |
| AAACCAATCAATATTGTAGG+TGG | + | chr3.4:38379685-38379704 | None:intergenic | 30.0% | |
| AACCAATCAATATTGTAGGT+GGG | + | chr3.4:38379684-38379703 | None:intergenic | 30.0% | |
| AATTTGTGGAGAGAAAGAAA+TGG | - | chr3.4:38379788-38379807 | MS.gene22262:CDS | 30.0% | |
| GAAAACTATGAATCCAAGAA+GGG | + | chr3.4:38378645-38378664 | None:intergenic | 30.0% | |
| GATTCTATAAGTACTCTTGT+TGG | - | chr3.4:38379127-38379146 | MS.gene22262:CDS | 30.0% | |
| TCAGATATTGCTATGATCAT+TGG | - | chr3.4:38379292-38379311 | MS.gene22262:CDS | 30.0% | |
| ! | AAACAGTGGTTATGTTGTTT+GGG | - | chr3.4:38378727-38378746 | MS.gene22262:CDS | 30.0% |
| ! | GTTTTGTAGCTGTTTGTTTA+GGG | - | chr3.4:38378963-38378982 | MS.gene22262:CDS | 30.0% |
| ! | TATCTGTTTCCTCTTTTTGT+TGG | - | chr3.4:38379220-38379239 | MS.gene22262:CDS | 30.0% |
| ! | TGTTATAAGTGTCATTGCTA+TGG | - | chr3.4:38379735-38379754 | MS.gene22262:CDS | 30.0% |
| !!! | CTTTGATTTTGGTTGTTAGT+GGG | - | chr3.4:38379197-38379216 | MS.gene22262:CDS | 30.0% |
| !!! | GCTTAGTTTTGATGAAATTG+TGG | - | chr3.4:38379522-38379541 | MS.gene22262:CDS | 30.0% |
| !!! | GTTACTTCCTTTTGTTGTTA+TGG | - | chr3.4:38378994-38379013 | MS.gene22262:CDS | 30.0% |
| ATCCCACCTACAATATTGAT+TGG | - | chr3.4:38379679-38379698 | MS.gene22262:CDS | 35.0% | |
| CAGGGATACTCCATATAAAT+GGG | + | chr3.4:38378667-38378686 | None:intergenic | 35.0% | |
| CCATGAAAGTAAAATCACAC+CGG | + | chr3.4:38379503-38379522 | None:intergenic | 35.0% | |
| GATATTGCTATGATCATTGG+TGG | - | chr3.4:38379295-38379314 | MS.gene22262:CDS | 35.0% | |
| GGAAAACTATGAATCCAAGA+AGG | + | chr3.4:38378646-38378665 | None:intergenic | 35.0% | |
| TAGAAGATGATGAAGATGAG+AGG | + | chr3.4:38378560-38378579 | None:intergenic | 35.0% | |
| TCAGGGATACTCCATATAAA+TGG | + | chr3.4:38378668-38378687 | None:intergenic | 35.0% | |
| TTATAAGGCCTTGATGCATT+TGG | + | chr3.4:38379622-38379641 | None:intergenic | 35.0% | |
| TTGGTGAAGTTGAAAATCCA+AGG | - | chr3.4:38379146-38379165 | MS.gene22262:CDS | 35.0% | |
| ! | AAATGCATCAAGGCCTTATA+AGG | - | chr3.4:38379621-38379640 | MS.gene22262:CDS | 35.0% |
| ! | ACAACATAACCACTGTTTTC+AGG | + | chr3.4:38378725-38378744 | None:intergenic | 35.0% |
| ! | ATCATCTTCTATGAAGTGTC+TGG | - | chr3.4:38378569-38378588 | MS.gene22262:CDS | 35.0% |
| ! | CAACATAACCACTGTTTTCA+GGG | + | chr3.4:38378724-38378743 | None:intergenic | 35.0% |
| ! | TAAGTTGGAACCATCAAGAT+GGG | - | chr3.4:38379033-38379052 | MS.gene22262:CDS | 35.0% |
| !! | ACTATTCCAGCTTTAGAAAG+TGG | - | chr3.4:38378863-38378882 | MS.gene22262:CDS | 35.0% |
| !! | ATCAGCTTTAGGACCTTATT+GGG | - | chr3.4:38378754-38378773 | MS.gene22262:CDS | 35.0% |
| !! | GGTTTTGTAGCTGTTTGTTT+AGG | - | chr3.4:38378962-38378981 | MS.gene22262:CDS | 35.0% |
| !!! | GCTTTGATTTTGGTTGTTAG+TGG | - | chr3.4:38379196-38379215 | MS.gene22262:CDS | 35.0% |
| AATCCAAGAAGGGTTAAGAG+AGG | + | chr3.4:38378635-38378654 | None:intergenic | 40.0% | |
| ACAATGTTCCCTGAAAACAG+TGG | - | chr3.4:38378713-38378732 | MS.gene22262:CDS | 40.0% | |
| CCAAGGAAAACACTTCCTAA+AGG | - | chr3.4:38379163-38379182 | MS.gene22262:CDS | 40.0% | |
| CCTAATGTTGCCAAAACTCT+AGG | + | chr3.4:38378893-38378912 | None:intergenic | 40.0% | |
| TCCAACAAGGTTGGATGAAA+TGG | - | chr3.4:38378780-38378799 | MS.gene22262:CDS | 40.0% | |
| TCCATTTCATCCAACCTTGT+TGG | + | chr3.4:38378784-38378803 | None:intergenic | 40.0% | |
| TGAAAGTAAAATCACACCGG+AGG | + | chr3.4:38379500-38379519 | None:intergenic | 40.0% | |
| TGCCTGAGTTCTTTACCAAA+AGG | - | chr3.4:38379434-38379453 | MS.gene22262:CDS | 40.0% | |
| ! | AGTGTCATTGCTATGGTGAT+TGG | - | chr3.4:38379742-38379761 | MS.gene22262:CDS | 40.0% |
| ! | ATCAAGGCCTTATAAGGTAC+CGG | - | chr3.4:38379627-38379646 | MS.gene22262:CDS | 40.0% |
| ! | ATCTTCTATGAAGTGTCTGG+AGG | - | chr3.4:38378572-38378591 | MS.gene22262:CDS | 40.0% |
| ! | CATCTTGATGGTTCCAACTT+AGG | + | chr3.4:38379034-38379053 | None:intergenic | 40.0% |
| ! | CCGGTGTGATTTTACTTTCA+TGG | - | chr3.4:38379500-38379519 | MS.gene22262:CDS | 40.0% |
| ! | CTAAGTTGGAACCATCAAGA+TGG | - | chr3.4:38379032-38379051 | MS.gene22262:CDS | 40.0% |
| ! | CTCTCCACAAATTTGAGACA+AGG | + | chr3.4:38379781-38379800 | None:intergenic | 40.0% |
| ! | GACCTTTTGGTAAAGAACTC+AGG | + | chr3.4:38379439-38379458 | None:intergenic | 40.0% |
| ! | GTTTGGGTTTCATCAGCTTT+AGG | - | chr3.4:38378743-38378762 | MS.gene22262:CDS | 40.0% |
| ! | TTTCCTCTTTTTGTTGGCAC+CGG | - | chr3.4:38379226-38379245 | MS.gene22262:CDS | 40.0% |
| !! | CATCAGCTTTAGGACCTTAT+TGG | - | chr3.4:38378753-38378772 | MS.gene22262:CDS | 40.0% |
| !! | CCTAGAGTTTTGGCAACATT+AGG | - | chr3.4:38378890-38378909 | MS.gene22262:CDS | 40.0% |
| !! | CTTGATTTGGTTTGTTGGTG+TGG | + | chr3.4:38378522-38378541 | None:intergenic | 40.0% |
| !! | GGTTGGATGAAATGGATTAG+TGG | - | chr3.4:38378788-38378807 | MS.gene22262:CDS | 40.0% |
| !! | TCAGCTTTAGGACCTTATTG+GGG | - | chr3.4:38378755-38378774 | MS.gene22262:CDS | 40.0% |
| !!! | CCTTTAGGAAGTGTTTTCCT+TGG | + | chr3.4:38379166-38379185 | None:intergenic | 40.0% |
| ACCTACCTGATCTGGACAAT+GGG | - | chr3.4:38379833-38379852 | MS.gene22262:CDS | 45.0% | |
| ACTGCATCCTCTGAACCAAA+TGG | + | chr3.4:38378599-38378618 | None:intergenic | 45.0% | |
| AGCCTTGATCACTGCTGAAA+TGG | - | chr3.4:38378688-38378707 | MS.gene22262:CDS | 45.0% | |
| ATTGGGGTTTCCAACAAGGT+TGG | - | chr3.4:38378771-38378790 | MS.gene22262:CDS | 45.0% | |
| CCCTAGAAGCTGAAATGAGT+CGG | + | chr3.4:38379395-38379414 | None:intergenic | 45.0% | |
| CCGACTCATTTCAGCTTCTA+GGG | - | chr3.4:38379392-38379411 | MS.gene22262:CDS | 45.0% | |
| CCTTATTGGGGTTTCCAACA+AGG | - | chr3.4:38378767-38378786 | MS.gene22262:CDS | 45.0% | |
| CCTTGTTGGAAACCCCAATA+AGG | + | chr3.4:38378770-38378789 | None:intergenic | 45.0% | |
| CTATGATCATTGGTGGAGCT+TGG | - | chr3.4:38379302-38379321 | MS.gene22262:CDS | 45.0% | |
| GCCTTGATCACTGCTGAAAT+GGG | - | chr3.4:38378689-38378708 | MS.gene22262:CDS | 45.0% | |
| GCTACGGTACGCCTATTATA+GGG | - | chr3.4:38379461-38379480 | MS.gene22262:CDS | 45.0% | |
| TCCACTTCAACCCATCTTGA+TGG | + | chr3.4:38379046-38379065 | None:intergenic | 45.0% | |
| TCCCATTTCAGCAGTGATCA+AGG | + | chr3.4:38378693-38378712 | None:intergenic | 45.0% | |
| TTTACCAAAAGGTCGCGCTA+CGG | - | chr3.4:38379445-38379464 | MS.gene22262:CDS | 45.0% | |
| ! | CTCATTTCAGCTTCTAGGGA+TGG | - | chr3.4:38379396-38379415 | MS.gene22262:CDS | 45.0% |
| ! | GCAGCCTTGTCTCAAATTTG+TGG | - | chr3.4:38379774-38379793 | MS.gene22262:CDS | 45.0% |
| ! | TCAAGGCCTTATAAGGTACC+GGG | - | chr3.4:38379628-38379647 | MS.gene22262:CDS | 45.0% |
| !! | ACCATCAAGATGGGTTGAAG+TGG | - | chr3.4:38379042-38379061 | MS.gene22262:CDS | 45.0% |
| !! | TTCCAGCTTTAGAAAGTGGC+TGG | - | chr3.4:38378867-38378886 | MS.gene22262:CDS | 45.0% |
| !! | TTGGTTTGTTGGTGTGGTAC+TGG | + | chr3.4:38378516-38378535 | None:intergenic | 45.0% |
| !! | TTTGTTGGTGTGGTACTGGT+AGG | + | chr3.4:38378512-38378531 | None:intergenic | 45.0% |
| ATTGCTCCAACTTTACCCCC+CGG | + | chr3.4:38379649-38379668 | None:intergenic | 50.0% | |
| CAGCAGTGATCAAGGCTTCA+GGG | + | chr3.4:38378685-38378704 | None:intergenic | 50.0% | |
| CCTACCTGATCTGGACAATG+GGG | - | chr3.4:38379834-38379853 | MS.gene22262:CDS | 50.0% | |
| CGCTACGGTACGCCTATTAT+AGG | - | chr3.4:38379460-38379479 | MS.gene22262:CDS | 50.0% | |
| GACCTACCTGATCTGGACAA+TGG | - | chr3.4:38379832-38379851 | MS.gene22262:CDS | 50.0% | |
| GAGGATGCAGTAAAAGCAGC+TGG | - | chr3.4:38378608-38378627 | MS.gene22262:CDS | 50.0% | |
| GGTCCTCTCTTAACCCTTCT+TGG | - | chr3.4:38378629-38378648 | MS.gene22262:CDS | 50.0% | |
| TAGTCCTGACCTACCTGATC+TGG | - | chr3.4:38379825-38379844 | MS.gene22262:CDS | 50.0% | |
| TCAGCAGTGATCAAGGCTTC+AGG | + | chr3.4:38378686-38378705 | None:intergenic | 50.0% | |
| TTACCCCCCGGTACCTTATA+AGG | + | chr3.4:38379637-38379656 | None:intergenic | 50.0% | |
| TTGGTGGAGCTTGGTTGAGA+TGG | - | chr3.4:38379311-38379330 | MS.gene22262:CDS | 50.0% | |
| TTGTCCAGATCAGGTAGGTC+AGG | + | chr3.4:38379832-38379851 | None:intergenic | 50.0% | |
| ! | GAAGTGTCTGGAGGACCATT+TGG | - | chr3.4:38378581-38378600 | MS.gene22262:CDS | 50.0% |
| ! | GCCGACTCATTTCAGCTTCT+AGG | - | chr3.4:38379391-38379410 | MS.gene22262:CDS | 50.0% |
| ! | TGGAGGACCATTTGGTTCAG+AGG | - | chr3.4:38378589-38378608 | MS.gene22262:CDS | 50.0% |
| ! | TGGGGAGAGCACACAAACAT+TGG | - | chr3.4:38379852-38379871 | MS.gene22262:CDS | 50.0% |
| !! | AAGGCCTTATAAGGTACCGG+GGG | - | chr3.4:38379630-38379649 | MS.gene22262:CDS | 50.0% |
| !! | CAAGGCCTTATAAGGTACCG+GGG | - | chr3.4:38379629-38379648 | MS.gene22262:CDS | 50.0% |
| !!! | AAGTGGCTGGCCTAGAGTTT+TGG | - | chr3.4:38378880-38378899 | MS.gene22262:CDS | 50.0% |
| !!! | GGGATACTTTTTTCGGCCTC+CGG | - | chr3.4:38379481-38379500 | MS.gene22262:CDS | 50.0% |
| CCCCATTGTCCAGATCAGGT+AGG | + | chr3.4:38379837-38379856 | None:intergenic | 55.0% | |
| CTCTCCCCATTGTCCAGATC+AGG | + | chr3.4:38379841-38379860 | None:intergenic | 55.0% | |
| GTGGAGCTTGGTTGAGATGG+TGG | - | chr3.4:38379314-38379333 | MS.gene22262:CDS | 55.0% | |
| GTGGCTTAATGCTGCAGCTG+CGG | - | chr3.4:38379333-38379352 | MS.gene22262:CDS | 55.0% | |
| ! | AGCTTCTAGGGATGGCTGAG+AGG | - | chr3.4:38379404-38379423 | MS.gene22262:CDS | 55.0% |
| ! | CTTCTAGGGATGGCTGAGAG+GGG | - | chr3.4:38379406-38379425 | MS.gene22262:CDS | 55.0% |
| ! | GCAGCTGCGGTGTCGAATAT+GGG | - | chr3.4:38379346-38379365 | MS.gene22262:CDS | 55.0% |
| ! | GCTTCTAGGGATGGCTGAGA+GGG | - | chr3.4:38379405-38379424 | MS.gene22262:CDS | 55.0% |
| ! | TGCAGCTGCGGTGTCGAATA+TGG | - | chr3.4:38379345-38379364 | MS.gene22262:CDS | 55.0% |
| !! | AAGGTACCGGGGGGTAAAGT+TGG | - | chr3.4:38379640-38379659 | MS.gene22262:CDS | 55.0% |
| !! | AGGCCTTATAAGGTACCGGG+GGG | - | chr3.4:38379631-38379650 | MS.gene22262:CDS | 55.0% |
| !! | GGCCAGCCACTTTCTAAAGC+TGG | + | chr3.4:38378872-38378891 | None:intergenic | 55.0% |
| !!! | TCTTTTTGTTGGCACCGGCG+CGG | - | chr3.4:38379231-38379250 | MS.gene22262:CDS | 55.0% |
| ! | CGTACCGTAGCGCGACCTTT+TGG | + | chr3.4:38379452-38379471 | None:intergenic | 60.0% |
| ! | GCGCCGGTGCCAACAAAAAG+AGG | + | chr3.4:38379232-38379251 | None:intergenic | 60.0% |
| ACCCGTCACTCCAAGCCGCG+CGG | + | chr3.4:38379267-38379286 | None:intergenic | 70.0% | |
| TTCCAGTGGACCGCGCGGCT+TGG | - | chr3.4:38379254-38379273 | MS.gene22262:CDS | 70.0% | |
| ! | ACCGCGCGGCTTGGAGTGAC+GGG | - | chr3.4:38379263-38379282 | MS.gene22262:CDS | 70.0% |
| ! | GACCGCGCGGCTTGGAGTGA+CGG | - | chr3.4:38379262-38379281 | MS.gene22262:CDS | 70.0% |
| CGCGGTTCCAGTGGACCGCG+CGG | - | chr3.4:38379249-38379268 | MS.gene22262:CDS | 75.0% | |
| CTCCAAGCCGCGCGGTCCAC+TGG | + | chr3.4:38379259-38379278 | None:intergenic | 75.0% | |
| GCGGTCCACTGGAACCGCGC+CGG | + | chr3.4:38379248-38379267 | None:intergenic | 75.0% | |
| !! | TGGCACCGGCGCGGTTCCAG+TGG | - | chr3.4:38379240-38379259 | MS.gene22262:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 38378491 | 38379882 | 38378491 | ID=MS.gene22262 |
| chr3.4 | mRNA | 38378491 | 38379882 | 38378491 | ID=MS.gene22262.t1;Parent=MS.gene22262 |
| chr3.4 | exon | 38378491 | 38379882 | 38378491 | ID=MS.gene22262.t1.exon1;Parent=MS.gene22262.t1 |
| chr3.4 | CDS | 38378491 | 38379882 | 38378491 | ID=cds.MS.gene22262.t1;Parent=MS.gene22262.t1 |
| Gene Sequence |
| Protein sequence |
