Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019112.t1 | XP_024630487.1 | 98.3 | 463 | 8 | 0 | 1 | 463 | 1 | 463 | 6.20E-259 | 902.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019112.t1 | Q9C6S5 | 70.3 | 462 | 134 | 2 | 5 | 463 | 34 | 495 | 3.5e-194 | 679.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019112.t1 | A0A396IMD5 | 98.3 | 463 | 8 | 0 | 1 | 463 | 1 | 463 | 4.4e-259 | 902.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40531 | MS.gene019112 | PPI |
| MS.gene004548 | MS.gene019112 | PPI |
| MS.gene72828 | MS.gene019112 | PPI |
| MS.gene019112 | MS.gene070082 | PPI |
| MS.gene52398 | MS.gene019112 | PPI |
| MS.gene028082 | MS.gene019112 | PPI |
| MS.gene00289 | MS.gene019112 | PPI |
| MS.gene019112 | MS.gene039946 | PPI |
| MS.gene046947 | MS.gene019112 | PPI |
| MS.gene024967 | MS.gene019112 | PPI |
| MS.gene070082 | MS.gene019112 | PPI |
| MS.gene68906 | MS.gene019112 | PPI |
| MS.gene22262 | MS.gene019112 | PPI |
| MS.gene84987 | MS.gene019112 | PPI |
| MS.gene92363 | MS.gene019112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019112.t1 | MTR_0031s0060 | 92.731 | 454 | 9 | 1 | 9 | 462 | 130 | 559 | 0.0 | 826 |
| MS.gene019112.t1 | MTR_5g026780 | 79.095 | 464 | 94 | 2 | 1 | 463 | 30 | 491 | 0.0 | 750 |
| MS.gene019112.t1 | MTR_5g026780 | 79.095 | 464 | 94 | 2 | 1 | 463 | 14 | 475 | 0.0 | 750 |
| MS.gene019112.t1 | MTR_1g112950 | 70.953 | 451 | 131 | 0 | 2 | 452 | 9 | 459 | 0.0 | 660 |
| MS.gene019112.t1 | MTR_5g005160 | 54.442 | 439 | 198 | 2 | 18 | 455 | 9 | 446 | 6.03e-166 | 477 |
| MS.gene019112.t1 | MTR_8g085630 | 48.736 | 435 | 220 | 2 | 13 | 444 | 34 | 468 | 1.06e-148 | 433 |
| MS.gene019112.t1 | MTR_5g064750 | 47.619 | 441 | 228 | 2 | 14 | 451 | 20 | 460 | 3.60e-143 | 418 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019112.t1 | AT1G31830 | 70.346 | 462 | 134 | 2 | 5 | 463 | 34 | 495 | 0.0 | 682 |
| MS.gene019112.t1 | AT1G31830 | 70.346 | 462 | 134 | 2 | 5 | 463 | 18 | 479 | 0.0 | 681 |
| MS.gene019112.t1 | AT5G05630 | 70.022 | 457 | 132 | 2 | 1 | 452 | 32 | 488 | 0.0 | 659 |
| MS.gene019112.t1 | AT1G31820 | 63.537 | 458 | 165 | 1 | 8 | 463 | 25 | 482 | 0.0 | 602 |
| MS.gene019112.t1 | AT3G19553 | 57.477 | 428 | 180 | 2 | 18 | 443 | 21 | 448 | 1.46e-174 | 498 |
| MS.gene019112.t1 | AT3G13620 | 45.553 | 461 | 245 | 3 | 5 | 459 | 12 | 472 | 8.94e-142 | 415 |
Find 108 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATTTCCTGTACTCTTT+TGG | 0.188714 | 3.1:-30806979 | MS.gene019112:CDS |
| GGTCCTCTCTTAACCCTTCT+TGG | 0.208029 | 3.1:-30807900 | MS.gene019112:CDS |
| ATCAGCTTTAGGACCTTATT+GGG | 0.221976 | 3.1:-30807775 | MS.gene019112:CDS |
| TCAGGGATACTCCATATAAA+TGG | 0.230173 | 3.1:+30807864 | None:intergenic |
| GTTTGGGTTTCATCAGCTTT+AGG | 0.243950 | 3.1:-30807786 | MS.gene019112:CDS |
| TGCAGCTGCGGTGTCGAATA+TGG | 0.255598 | 3.1:-30807184 | MS.gene019112:CDS |
| CATCAGCTTTAGGACCTTAT+TGG | 0.283142 | 3.1:-30807776 | MS.gene019112:CDS |
| GCCGACTCATTTCAGCTTCT+AGG | 0.293315 | 3.1:-30807138 | MS.gene019112:CDS |
| AAAACAGTGGTTATGTTGTT+TGG | 0.310011 | 3.1:-30807803 | MS.gene019112:CDS |
| TCCAACAAGGTTGGATGAAA+TGG | 0.322758 | 3.1:-30807749 | MS.gene019112:CDS |
| CGTTACGGTACGCCTATTAT+AGG | 0.327979 | 3.1:-30807069 | MS.gene019112:CDS |
| TCCATTTCATCCAACCTTGT+TGG | 0.334475 | 3.1:+30807748 | None:intergenic |
| TGGATTTAAAAGATATTGAT+TGG | 0.335722 | 3.1:-30807467 | MS.gene019112:CDS |
| AAATGCATCAAGGCCTTATA+AGG | 0.337429 | 3.1:-30806908 | MS.gene019112:CDS |
| TCAGCAGTGATCAAGGCTTC+AGG | 0.339235 | 3.1:+30807846 | None:intergenic |
| TCCACTTCAACCCATCTTGA+TGG | 0.351473 | 3.1:+30807486 | None:intergenic |
| TCAGATATTGCTATGATCAT+TGG | 0.351597 | 3.1:-30807237 | MS.gene019112:CDS |
| AAGTGGCTGGCCTAGAGTTT+TGG | 0.352088 | 3.1:-30807649 | MS.gene019112:CDS |
| TTATAAGGCCTTGATGCATT+TGG | 0.365218 | 3.1:+30806910 | None:intergenic |
| TTGGTTTGTTGGTGTGGTAC+TGG | 0.372779 | 3.1:+30808016 | None:intergenic |
| AAAGCATAAAACAAACCTTT+AGG | 0.375897 | 3.1:+30807351 | None:intergenic |
| ACCTACCTGATCTGGACAAT+GGG | 0.376715 | 3.1:-30806696 | MS.gene019112:CDS |
| CATCTTGATGGTTCCAACTT+AGG | 0.382965 | 3.1:+30807498 | None:intergenic |
| ATTTATTTCAATTCCTAAGT+TGG | 0.384356 | 3.1:-30807511 | MS.gene019112:CDS |
| TATAGAGGTTTAACTATTGT+TGG | 0.385829 | 3.1:-30807588 | MS.gene019112:CDS |
| TTCCAGTGGACCGCGCGGCT+TGG | 0.402635 | 3.1:-30807275 | MS.gene019112:CDS |
| GTTACGGTACGCCTATTATA+GGG | 0.403437 | 3.1:-30807068 | MS.gene019112:CDS |
| GAAGTGTCTGGAGGACCATT+TGG | 0.412620 | 3.1:-30807948 | MS.gene019112:CDS |
| AAACAGTGGTTATGTTGTTT+GGG | 0.414591 | 3.1:-30807802 | MS.gene019112:CDS |
| CTCTCCCCATTGTCCAGATC+AGG | 0.418939 | 3.1:+30806691 | None:intergenic |
| ATCCCACCTACAATATTGAT+TGG | 0.423497 | 3.1:-30806850 | MS.gene019112:CDS |
| AGCCTTGATCACTGCTGAAA+TGG | 0.423748 | 3.1:-30807841 | MS.gene019112:CDS |
| AGATAATCAAGAAACAAAAC+TGG | 0.424322 | 3.1:+30807696 | None:intergenic |
| ATCATCTTCTATGAAGTGTC+TGG | 0.425953 | 3.1:-30807960 | MS.gene019112:CDS |
| CTCCAAGCCGCGCGGTCCAC+TGG | 0.426120 | 3.1:+30807273 | None:intergenic |
| CCTTGTTGGAAACCCCAATA+AGG | 0.431314 | 3.1:+30807762 | None:intergenic |
| ACAAAACCAATCAATATTGT+AGG | 0.447741 | 3.1:+30806844 | None:intergenic |
| CGTACCGTAACGCGACCTTT+TGG | 0.448873 | 3.1:+30807080 | None:intergenic |
| TCCCATTTCAGCAGTGATCA+AGG | 0.449929 | 3.1:+30807839 | None:intergenic |
| GGCCAGCCACTTTCTAAAGC+TGG | 0.452471 | 3.1:+30807660 | None:intergenic |
| GATTCTATAAGTACTCTTGT+TGG | 0.458007 | 3.1:-30807402 | MS.gene019112:CDS |
| CAGGGATACTCCATATAAAT+GGG | 0.460294 | 3.1:+30807865 | None:intergenic |
| CTATGATCATTGGTGGAGCT+TGG | 0.461415 | 3.1:-30807227 | MS.gene019112:CDS |
| CTCTCCACAAATTTGAGACA+AGG | 0.466334 | 3.1:+30806751 | None:intergenic |
| CCGACTCATTTCAGCTTCTA+GGG | 0.471267 | 3.1:-30807137 | MS.gene019112:CDS |
| ATAAATCCCATAACAACAAA+AGG | 0.475766 | 3.1:+30807528 | None:intergenic |
| TAGTCCTGACCTACCTGATC+TGG | 0.476702 | 3.1:-30806704 | MS.gene019112:CDS |
| CTTGATTTGGTTTGTTGGTG+TGG | 0.478422 | 3.1:+30808010 | None:intergenic |
| GCCTTGATCACTGCTGAAAT+GGG | 0.479371 | 3.1:-30807840 | MS.gene019112:CDS |
| ACTATTCCAGCTTTAGAAAG+TGG | 0.483127 | 3.1:-30807666 | MS.gene019112:CDS |
| GCAGCCTTGTCTCAAATTTG+TGG | 0.484308 | 3.1:-30806755 | MS.gene019112:CDS |
| TGCCTGAGTTCTTTACCAAA+AGG | 0.486374 | 3.1:-30807095 | MS.gene019112:CDS |
| TTGTCCAGATCAGGTAGGTC+AGG | 0.487753 | 3.1:+30806700 | None:intergenic |
| CCTAATGTTGCCAAAACTCT+AGG | 0.494283 | 3.1:+30807639 | None:intergenic |
| TTCCAGCTTTAGAAAGTGGC+TGG | 0.498721 | 3.1:-30807662 | MS.gene019112:CDS |
| GACCGCGCGGCTTGGAGTGA+CGG | 0.505316 | 3.1:-30807267 | MS.gene019112:CDS |
| CCTTATTGGGGTTTCCAACA+AGG | 0.506446 | 3.1:-30807762 | MS.gene019112:CDS |
| TCAAGGCCTTATAAGGTACC+AGG | 0.511073 | 3.1:-30806901 | MS.gene019112:CDS |
| CCAAGGAAAACACTTCCTAA+AGG | 0.513941 | 3.1:-30807366 | MS.gene019112:CDS |
| AGTGTCATTGCTATGGTGAT+TGG | 0.514324 | 3.1:-30806787 | MS.gene019112:CDS |
| GATATTGCTATGATCATTGG+TGG | 0.514890 | 3.1:-30807234 | MS.gene019112:CDS |
| CTCATTTCAGCTTCTAGGGA+TGG | 0.515121 | 3.1:-30807133 | MS.gene019112:CDS |
| CAGCAGTGATCAAGGCTTCA+GGG | 0.515674 | 3.1:+30807847 | None:intergenic |
| ATTGGGGTTTCCAACAAGGT+TGG | 0.521088 | 3.1:-30807758 | MS.gene019112:CDS |
| GCAGCTGCGGTGTCGAATAT+GGG | 0.523410 | 3.1:-30807183 | MS.gene019112:CDS |
| TTGGTGGAGCTTGGTTGAGA+TGG | 0.527133 | 3.1:-30807218 | MS.gene019112:CDS |
| TGTTATAAGTGTCATTGCTA+TGG | 0.529506 | 3.1:-30806794 | MS.gene019112:CDS |
| AAACCAATCAATATTGTAGG+TGG | 0.533397 | 3.1:+30806847 | None:intergenic |
| GCTTCTAGGGATGGCTGAGA+GGG | 0.533973 | 3.1:-30807124 | MS.gene019112:CDS |
| ACCGCGCGGCTTGGAGTGAC+GGG | 0.534962 | 3.1:-30807266 | MS.gene019112:CDS |
| GTGGAGCTTGGTTGAGATGG+TGG | 0.535569 | 3.1:-30807215 | MS.gene019112:CDS |
| GGAAAACTATGAATCCAAGA+AGG | 0.537053 | 3.1:+30807886 | None:intergenic |
| TGGCACCGGCGTGGTTCCAG+TGG | 0.541736 | 3.1:-30807289 | MS.gene019112:CDS |
| ACTGCATCCTCTGAACCAAA+TGG | 0.544541 | 3.1:+30807933 | None:intergenic |
| TGGAGGACCATTTGGTTCAG+AGG | 0.551347 | 3.1:-30807940 | MS.gene019112:CDS |
| TTTACCAAAAGGTCGCGTTA+CGG | 0.554475 | 3.1:-30807084 | MS.gene019112:CDS |
| TAAGTTGGAACCATCAAGAT+GGG | 0.561659 | 3.1:-30807496 | MS.gene019112:CDS |
| GAATTATTCCAAAAGAGTAC+AGG | 0.563463 | 3.1:+30806971 | None:intergenic |
| GAGGATGCAGTAAAAGCAGC+TGG | 0.564248 | 3.1:-30807921 | MS.gene019112:CDS |
| ACCATCAAGATGGGTTGAAG+TGG | 0.565642 | 3.1:-30807487 | MS.gene019112:CDS |
| GGTTGGATGAAATGGATTAG+TGG | 0.567663 | 3.1:-30807741 | MS.gene019112:CDS |
| AATTTGTGGAGAGAAAGAAA+TGG | 0.574720 | 3.1:-30806741 | MS.gene019112:CDS |
| TGGGGAGAGCACACAAACAT+TGG | 0.574767 | 3.1:-30806677 | MS.gene019112:CDS |
| CTAAGTTGGAACCATCAAGA+TGG | 0.579540 | 3.1:-30807497 | MS.gene019112:CDS |
| TTTGTTGGTGTGGTACTGGT+AGG | 0.580564 | 3.1:+30808020 | None:intergenic |
| CCCTAGAAGCTGAAATGAGT+CGG | 0.588600 | 3.1:+30807137 | None:intergenic |
| GTGGCTTAATGCTGCAGCTG+CGG | 0.592462 | 3.1:-30807196 | MS.gene019112:CDS |
| GACCTACCTGATCTGGACAA+TGG | 0.594367 | 3.1:-30806697 | MS.gene019112:CDS |
| AGCTTCTAGGGATGGCTGAG+AGG | 0.595536 | 3.1:-30807125 | MS.gene019112:CDS |
| TTGGTGAAGTCGAAAATCCA+AGG | 0.599799 | 3.1:-30807383 | MS.gene019112:CDS |
| TAGAAGATGATGAAGATGAG+AGG | 0.601071 | 3.1:+30807972 | None:intergenic |
| TCAGCTTTAGGACCTTATTG+GGG | 0.602003 | 3.1:-30807774 | MS.gene019112:CDS |
| AACCAATCAATATTGTAGGT+GGG | 0.606006 | 3.1:+30806848 | None:intergenic |
| GAAAACTATGAATCCAAGAA+GGG | 0.606263 | 3.1:+30807887 | None:intergenic |
| ATCTTCTATGAAGTGTCTGG+AGG | 0.631099 | 3.1:-30807957 | MS.gene019112:CDS |
| CAAGGCCTTATAAGGTACCA+GGG | 0.652685 | 3.1:-30806900 | MS.gene019112:CDS |
| GCGGTCCACTGGAACCACGC+CGG | 0.663024 | 3.1:+30807284 | None:intergenic |
| AATCCAAGAAGGGTTAAGAG+AGG | 0.667612 | 3.1:+30807897 | None:intergenic |
| CTTCTAGGGATGGCTGAGAG+GGG | 0.668163 | 3.1:-30807123 | MS.gene019112:CDS |
| TGAAAGTAAAATCACACCGG+AGG | 0.680499 | 3.1:+30807032 | None:intergenic |
| AAGGCCTTATAAGGTACCAG+GGG | 0.690559 | 3.1:-30806899 | MS.gene019112:CDS |
| CCGTGAAAGTAAAATCACAC+CGG | 0.697705 | 3.1:+30807029 | None:intergenic |
| CCCCATTGTCCAGATCAGGT+AGG | 0.702852 | 3.1:+30806695 | None:intergenic |
| ACCCGTCACTCCAAGCCGCG+CGG | 0.707480 | 3.1:+30807265 | None:intergenic |
| CGTGGTTCCAGTGGACCGCG+CGG | 0.723256 | 3.1:-30807280 | MS.gene019112:CDS |
| CCTACCTGATCTGGACAATG+GGG | 0.745924 | 3.1:-30806695 | MS.gene019112:CDS |
| AGGCCTTATAAGGTACCAGG+GGG | 0.752209 | 3.1:-30806898 | MS.gene019112:CDS |
| ACAATGTTCCCTGAAAACAG+TGG | 0.765904 | 3.1:-30807816 | MS.gene019112:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTCAATTCCTAAGT+TGG | - | chr3.1:30807196-30807215 | MS.gene019112:CDS | 20.0% |
| !! | TGGATTTAAAAGATATTGAT+TGG | - | chr3.1:30807240-30807259 | MS.gene019112:CDS | 20.0% |
| !!! | AATATTGATTGGTTTTGTAT+TGG | - | chr3.1:30807868-30807887 | MS.gene019112:CDS | 20.0% |
| !!! | CTAACTATTTTGAATTATAG+AGG | - | chr3.1:30807104-30807123 | MS.gene019112:CDS | 20.0% |
| !!! | GAATTGAAATTTTCTTGATT+TGG | + | chr3.1:30806713-30806732 | None:intergenic | 20.0% |
| !!! | TATTATAGGGATACTTTTTT+CGG | - | chr3.1:30807652-30807671 | MS.gene019112:CDS | 20.0% |
| !!! | TGTATTTGAATACTCTTTTT+TGG | - | chr3.1:30807267-30807286 | MS.gene019112:CDS | 20.0% |
| !!! | TTTGTTTTATGCTTTGATTT+TGG | - | chr3.1:30807364-30807383 | MS.gene019112:CDS | 20.0% |
| !!! | TTTTTGGAATCTTAACTATT+GGG | - | chr3.1:30807283-30807302 | MS.gene019112:CDS | 20.0% |
| !!! | TTTTTTGGAATCTTAACTAT+TGG | - | chr3.1:30807282-30807301 | MS.gene019112:CDS | 20.0% |
| ! | AAAGCATAAAACAAACCTTT+AGG | + | chr3.1:30807359-30807378 | None:intergenic | 25.0% |
| ! | ACAAAACCAATCAATATTGT+AGG | + | chr3.1:30807866-30807885 | None:intergenic | 25.0% |
| ! | AGATAATCAAGAAACAAAAC+TGG | + | chr3.1:30807014-30807033 | None:intergenic | 25.0% |
| ! | ATAAATCCCATAACAACAAA+AGG | + | chr3.1:30807182-30807201 | None:intergenic | 25.0% |
| ! | TATAGAGGTTTAACTATTGT+TGG | - | chr3.1:30807119-30807138 | MS.gene019112:CDS | 25.0% |
| ! | TTAAAAAACCAAATGCATCA+AGG | - | chr3.1:30807789-30807808 | MS.gene019112:CDS | 25.0% |
| !! | TCATAGTTTTCCCATTTATA+TGG | - | chr3.1:30806832-30806851 | MS.gene019112:CDS | 25.0% |
| !!! | ATTTTCTTGATTTGGTTTGT+TGG | + | chr3.1:30806705-30806724 | None:intergenic | 25.0% |
| !!! | GAAAAAAGTATCCCTATAAT+AGG | + | chr3.1:30807653-30807672 | None:intergenic | 25.0% |
| !!! | TTACTTCCTTTTGTTGTTAT+GGG | - | chr3.1:30807173-30807192 | MS.gene019112:CDS | 25.0% |
| AAAACAGTGGTTATGTTGTT+TGG | - | chr3.1:30806904-30806923 | MS.gene019112:CDS | 30.0% | |
| AAACCAATCAATATTGTAGG+TGG | + | chr3.1:30807863-30807882 | None:intergenic | 30.0% | |
| AACCAATCAATATTGTAGGT+GGG | + | chr3.1:30807862-30807881 | None:intergenic | 30.0% | |
| AATTTGTGGAGAGAAAGAAA+TGG | - | chr3.1:30807966-30807985 | MS.gene019112:CDS | 30.0% | |
| GAAAACTATGAATCCAAGAA+GGG | + | chr3.1:30806823-30806842 | None:intergenic | 30.0% | |
| GATTCTATAAGTACTCTTGT+TGG | - | chr3.1:30807305-30807324 | MS.gene019112:CDS | 30.0% | |
| TCAGATATTGCTATGATCAT+TGG | - | chr3.1:30807470-30807489 | MS.gene019112:CDS | 30.0% | |
| ! | AAACAGTGGTTATGTTGTTT+GGG | - | chr3.1:30806905-30806924 | MS.gene019112:CDS | 30.0% |
| ! | GAAAATTTCCTGTACTCTTT+TGG | - | chr3.1:30807728-30807747 | MS.gene019112:CDS | 30.0% |
| ! | GAATTATTCCAAAAGAGTAC+AGG | + | chr3.1:30807739-30807758 | None:intergenic | 30.0% |
| ! | TATCTGTTTCCTCTTTTTGT+TGG | - | chr3.1:30807398-30807417 | MS.gene019112:CDS | 30.0% |
| ! | TGTTATAAGTGTCATTGCTA+TGG | - | chr3.1:30807913-30807932 | MS.gene019112:CDS | 30.0% |
| !!! | GCTTAGTTTTGATGAAATTG+TGG | - | chr3.1:30807700-30807719 | MS.gene019112:CDS | 30.0% |
| !!! | GTTACTTCCTTTTGTTGTTA+TGG | - | chr3.1:30807172-30807191 | MS.gene019112:CDS | 30.0% |
| !!! | GTTTTGTTGCTGTTTGTTTA+GGG | - | chr3.1:30807141-30807160 | MS.gene019112:CDS | 30.0% |
| ATCCCACCTACAATATTGAT+TGG | - | chr3.1:30807857-30807876 | MS.gene019112:CDS | 35.0% | |
| CAGGGATACTCCATATAAAT+GGG | + | chr3.1:30806845-30806864 | None:intergenic | 35.0% | |
| GATATTGCTATGATCATTGG+TGG | - | chr3.1:30807473-30807492 | MS.gene019112:CDS | 35.0% | |
| GGAAAACTATGAATCCAAGA+AGG | + | chr3.1:30806824-30806843 | None:intergenic | 35.0% | |
| TAGAAGATGATGAAGATGAG+AGG | + | chr3.1:30806738-30806757 | None:intergenic | 35.0% | |
| TCAGGGATACTCCATATAAA+TGG | + | chr3.1:30806846-30806865 | None:intergenic | 35.0% | |
| TTATAAGGCCTTGATGCATT+TGG | + | chr3.1:30807800-30807819 | None:intergenic | 35.0% | |
| ! | AAATGCATCAAGGCCTTATA+AGG | - | chr3.1:30807799-30807818 | MS.gene019112:CDS | 35.0% |
| ! | ACAACATAACCACTGTTTTC+AGG | + | chr3.1:30806903-30806922 | None:intergenic | 35.0% |
| ! | ATCATCTTCTATGAAGTGTC+TGG | - | chr3.1:30806747-30806766 | MS.gene019112:CDS | 35.0% |
| ! | CAACATAACCACTGTTTTCA+GGG | + | chr3.1:30806902-30806921 | None:intergenic | 35.0% |
| ! | TAAGTTGGAACCATCAAGAT+GGG | - | chr3.1:30807211-30807230 | MS.gene019112:CDS | 35.0% |
| !! | ACTATTCCAGCTTTAGAAAG+TGG | - | chr3.1:30807041-30807060 | MS.gene019112:CDS | 35.0% |
| !! | ATCAGCTTTAGGACCTTATT+GGG | - | chr3.1:30806932-30806951 | MS.gene019112:CDS | 35.0% |
| !!! | GCTTTGATTTTGGTTGTTAG+TGG | - | chr3.1:30807374-30807393 | MS.gene019112:CDS | 35.0% |
| !!! | GGTTTTGTTGCTGTTTGTTT+AGG | - | chr3.1:30807140-30807159 | MS.gene019112:CDS | 35.0% |
| AATCCAAGAAGGGTTAAGAG+AGG | + | chr3.1:30806813-30806832 | None:intergenic | 40.0% | |
| ACAATGTTCCCTGAAAACAG+TGG | - | chr3.1:30806891-30806910 | MS.gene019112:CDS | 40.0% | |
| CCAAGGAAAACACTTCCTAA+AGG | - | chr3.1:30807341-30807360 | MS.gene019112:CDS | 40.0% | |
| CCGTGAAAGTAAAATCACAC+CGG | + | chr3.1:30807681-30807700 | None:intergenic | 40.0% | |
| CCTAATGTTGCCAAAACTCT+AGG | + | chr3.1:30807071-30807090 | None:intergenic | 40.0% | |
| GTTACGGTACGCCTATTATA+GGG | - | chr3.1:30807639-30807658 | MS.gene019112:CDS | 40.0% | |
| TCCAACAAGGTTGGATGAAA+TGG | - | chr3.1:30806958-30806977 | MS.gene019112:CDS | 40.0% | |
| TCCATTTCATCCAACCTTGT+TGG | + | chr3.1:30806962-30806981 | None:intergenic | 40.0% | |
| TGAAAGTAAAATCACACCGG+AGG | + | chr3.1:30807678-30807697 | None:intergenic | 40.0% | |
| TGCCTGAGTTCTTTACCAAA+AGG | - | chr3.1:30807612-30807631 | MS.gene019112:CDS | 40.0% | |
| TTGGTGAAGTCGAAAATCCA+AGG | - | chr3.1:30807324-30807343 | MS.gene019112:CDS | 40.0% | |
| TTTACCAAAAGGTCGCGTTA+CGG | - | chr3.1:30807623-30807642 | MS.gene019112:CDS | 40.0% | |
| ! | AGTGTCATTGCTATGGTGAT+TGG | - | chr3.1:30807920-30807939 | MS.gene019112:CDS | 40.0% |
| ! | ATCTTCTATGAAGTGTCTGG+AGG | - | chr3.1:30806750-30806769 | MS.gene019112:CDS | 40.0% |
| ! | CATCTTGATGGTTCCAACTT+AGG | + | chr3.1:30807212-30807231 | None:intergenic | 40.0% |
| ! | CCGGTGTGATTTTACTTTCA+CGG | - | chr3.1:30807678-30807697 | MS.gene019112:CDS | 40.0% |
| ! | CTAAGTTGGAACCATCAAGA+TGG | - | chr3.1:30807210-30807229 | MS.gene019112:CDS | 40.0% |
| ! | CTCTCCACAAATTTGAGACA+AGG | + | chr3.1:30807959-30807978 | None:intergenic | 40.0% |
| ! | GACCTTTTGGTAAAGAACTC+AGG | + | chr3.1:30807617-30807636 | None:intergenic | 40.0% |
| ! | GTTTGGGTTTCATCAGCTTT+AGG | - | chr3.1:30806921-30806940 | MS.gene019112:CDS | 40.0% |
| ! | TTTCCTCTTTTTGTTGGCAC+CGG | - | chr3.1:30807404-30807423 | MS.gene019112:CDS | 40.0% |
| !! | CATCAGCTTTAGGACCTTAT+TGG | - | chr3.1:30806931-30806950 | MS.gene019112:CDS | 40.0% |
| !! | CCTAGAGTTTTGGCAACATT+AGG | - | chr3.1:30807068-30807087 | MS.gene019112:CDS | 40.0% |
| !! | CTTGATTTGGTTTGTTGGTG+TGG | + | chr3.1:30806700-30806719 | None:intergenic | 40.0% |
| !! | GGTTGGATGAAATGGATTAG+TGG | - | chr3.1:30806966-30806985 | MS.gene019112:CDS | 40.0% |
| !! | TCAGCTTTAGGACCTTATTG+GGG | - | chr3.1:30806933-30806952 | MS.gene019112:CDS | 40.0% |
| !!! | CCTTTAGGAAGTGTTTTCCT+TGG | + | chr3.1:30807344-30807363 | None:intergenic | 40.0% |
| ACCTACCTGATCTGGACAAT+GGG | - | chr3.1:30808011-30808030 | MS.gene019112:CDS | 45.0% | |
| ACTGCATCCTCTGAACCAAA+TGG | + | chr3.1:30806777-30806796 | None:intergenic | 45.0% | |
| AGCCTTGATCACTGCTGAAA+TGG | - | chr3.1:30806866-30806885 | MS.gene019112:CDS | 45.0% | |
| ATTGGGGTTTCCAACAAGGT+TGG | - | chr3.1:30806949-30806968 | MS.gene019112:CDS | 45.0% | |
| CCCTAGAAGCTGAAATGAGT+CGG | + | chr3.1:30807573-30807592 | None:intergenic | 45.0% | |
| CCGACTCATTTCAGCTTCTA+GGG | - | chr3.1:30807570-30807589 | MS.gene019112:CDS | 45.0% | |
| CCTTATTGGGGTTTCCAACA+AGG | - | chr3.1:30806945-30806964 | MS.gene019112:CDS | 45.0% | |
| CCTTGTTGGAAACCCCAATA+AGG | + | chr3.1:30806948-30806967 | None:intergenic | 45.0% | |
| CGTTACGGTACGCCTATTAT+AGG | - | chr3.1:30807638-30807657 | MS.gene019112:CDS | 45.0% | |
| CTATGATCATTGGTGGAGCT+TGG | - | chr3.1:30807480-30807499 | MS.gene019112:CDS | 45.0% | |
| GCCTTGATCACTGCTGAAAT+GGG | - | chr3.1:30806867-30806886 | MS.gene019112:CDS | 45.0% | |
| TCCACTTCAACCCATCTTGA+TGG | + | chr3.1:30807224-30807243 | None:intergenic | 45.0% | |
| TCCCATTTCAGCAGTGATCA+AGG | + | chr3.1:30806871-30806890 | None:intergenic | 45.0% | |
| TTACCCCCTGGTACCTTATA+AGG | + | chr3.1:30807815-30807834 | None:intergenic | 45.0% | |
| ! | AAGGCCTTATAAGGTACCAG+GGG | - | chr3.1:30807808-30807827 | MS.gene019112:CDS | 45.0% |
| ! | CAAGGCCTTATAAGGTACCA+GGG | - | chr3.1:30807807-30807826 | MS.gene019112:CDS | 45.0% |
| ! | CTCATTTCAGCTTCTAGGGA+TGG | - | chr3.1:30807574-30807593 | MS.gene019112:CDS | 45.0% |
| ! | GCAGCCTTGTCTCAAATTTG+TGG | - | chr3.1:30807952-30807971 | MS.gene019112:CDS | 45.0% |
| ! | TCAAGGCCTTATAAGGTACC+AGG | - | chr3.1:30807806-30807825 | MS.gene019112:CDS | 45.0% |
| !! | ACCATCAAGATGGGTTGAAG+TGG | - | chr3.1:30807220-30807239 | MS.gene019112:CDS | 45.0% |
| !! | TTCCAGCTTTAGAAAGTGGC+TGG | - | chr3.1:30807045-30807064 | MS.gene019112:CDS | 45.0% |
| !! | TTGGTTTGTTGGTGTGGTAC+TGG | + | chr3.1:30806694-30806713 | None:intergenic | 45.0% |
| !! | TTTGTTGGTGTGGTACTGGT+AGG | + | chr3.1:30806690-30806709 | None:intergenic | 45.0% |
| ATTGCTCCAACTTTACCCCC+TGG | + | chr3.1:30807827-30807846 | None:intergenic | 50.0% | |
| CAGCAGTGATCAAGGCTTCA+GGG | + | chr3.1:30806863-30806882 | None:intergenic | 50.0% | |
| CCTACCTGATCTGGACAATG+GGG | - | chr3.1:30808012-30808031 | MS.gene019112:CDS | 50.0% | |
| GACCTACCTGATCTGGACAA+TGG | - | chr3.1:30808010-30808029 | MS.gene019112:CDS | 50.0% | |
| GAGGATGCAGTAAAAGCAGC+TGG | - | chr3.1:30806786-30806805 | MS.gene019112:CDS | 50.0% | |
| GGTCCTCTCTTAACCCTTCT+TGG | - | chr3.1:30806807-30806826 | MS.gene019112:CDS | 50.0% | |
| TAGTCCTGACCTACCTGATC+TGG | - | chr3.1:30808003-30808022 | MS.gene019112:CDS | 50.0% | |
| TCAGCAGTGATCAAGGCTTC+AGG | + | chr3.1:30806864-30806883 | None:intergenic | 50.0% | |
| TTGGTGGAGCTTGGTTGAGA+TGG | - | chr3.1:30807489-30807508 | MS.gene019112:CDS | 50.0% | |
| TTGTCCAGATCAGGTAGGTC+AGG | + | chr3.1:30808010-30808029 | None:intergenic | 50.0% | |
| ! | AAGGTACCAGGGGGTAAAGT+TGG | - | chr3.1:30807818-30807837 | MS.gene019112:CDS | 50.0% |
| ! | AGGCCTTATAAGGTACCAGG+GGG | - | chr3.1:30807809-30807828 | MS.gene019112:CDS | 50.0% |
| ! | GAAGTGTCTGGAGGACCATT+TGG | - | chr3.1:30806759-30806778 | MS.gene019112:CDS | 50.0% |
| ! | GCCGACTCATTTCAGCTTCT+AGG | - | chr3.1:30807569-30807588 | MS.gene019112:CDS | 50.0% |
| ! | TGGAGGACCATTTGGTTCAG+AGG | - | chr3.1:30806767-30806786 | MS.gene019112:CDS | 50.0% |
| ! | TGGGGAGAGCACACAAACAT+TGG | - | chr3.1:30808030-30808049 | MS.gene019112:CDS | 50.0% |
| !!! | AAGTGGCTGGCCTAGAGTTT+TGG | - | chr3.1:30807058-30807077 | MS.gene019112:CDS | 50.0% |
| !!! | GGGATACTTTTTTCGGCCTC+CGG | - | chr3.1:30807659-30807678 | MS.gene019112:CDS | 50.0% |
| CCCCATTGTCCAGATCAGGT+AGG | + | chr3.1:30808015-30808034 | None:intergenic | 55.0% | |
| CTCTCCCCATTGTCCAGATC+AGG | + | chr3.1:30808019-30808038 | None:intergenic | 55.0% | |
| GTGGAGCTTGGTTGAGATGG+TGG | - | chr3.1:30807492-30807511 | MS.gene019112:CDS | 55.0% | |
| GTGGCTTAATGCTGCAGCTG+CGG | - | chr3.1:30807511-30807530 | MS.gene019112:CDS | 55.0% | |
| ! | ACGCCGGTGCCAACAAAAAG+AGG | + | chr3.1:30807410-30807429 | None:intergenic | 55.0% |
| ! | AGCTTCTAGGGATGGCTGAG+AGG | - | chr3.1:30807582-30807601 | MS.gene019112:CDS | 55.0% |
| ! | CGTACCGTAACGCGACCTTT+TGG | + | chr3.1:30807630-30807649 | None:intergenic | 55.0% |
| ! | CTTCTAGGGATGGCTGAGAG+GGG | - | chr3.1:30807584-30807603 | MS.gene019112:CDS | 55.0% |
| ! | GCAGCTGCGGTGTCGAATAT+GGG | - | chr3.1:30807524-30807543 | MS.gene019112:CDS | 55.0% |
| ! | GCTTCTAGGGATGGCTGAGA+GGG | - | chr3.1:30807583-30807602 | MS.gene019112:CDS | 55.0% |
| ! | TGCAGCTGCGGTGTCGAATA+TGG | - | chr3.1:30807523-30807542 | MS.gene019112:CDS | 55.0% |
| !! | GGCCAGCCACTTTCTAAAGC+TGG | + | chr3.1:30807050-30807069 | None:intergenic | 55.0% |
| !!! | TCTTTTTGTTGGCACCGGCG+TGG | - | chr3.1:30807409-30807428 | MS.gene019112:CDS | 55.0% |
| ACCCGTCACTCCAAGCCGCG+CGG | + | chr3.1:30807445-30807464 | None:intergenic | 70.0% | |
| CGTGGTTCCAGTGGACCGCG+CGG | - | chr3.1:30807427-30807446 | MS.gene019112:CDS | 70.0% | |
| GCGGTCCACTGGAACCACGC+CGG | + | chr3.1:30807426-30807445 | None:intergenic | 70.0% | |
| TTCCAGTGGACCGCGCGGCT+TGG | - | chr3.1:30807432-30807451 | MS.gene019112:CDS | 70.0% | |
| ! | ACCGCGCGGCTTGGAGTGAC+GGG | - | chr3.1:30807441-30807460 | MS.gene019112:CDS | 70.0% |
| ! | GACCGCGCGGCTTGGAGTGA+CGG | - | chr3.1:30807440-30807459 | MS.gene019112:CDS | 70.0% |
| !! | TGGCACCGGCGTGGTTCCAG+TGG | - | chr3.1:30807418-30807437 | MS.gene019112:CDS | 70.0% |
| CTCCAAGCCGCGCGGTCCAC+TGG | + | chr3.1:30807437-30807456 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 30806669 | 30808060 | 30806669 | ID=MS.gene019112 |
| chr3.1 | mRNA | 30806669 | 30808060 | 30806669 | ID=MS.gene019112.t1;Parent=MS.gene019112 |
| chr3.1 | exon | 30806669 | 30808060 | 30806669 | ID=MS.gene019112.t1.exon1;Parent=MS.gene019112.t1 |
| chr3.1 | CDS | 30806669 | 30808060 | 30806669 | ID=cds.MS.gene019112.t1;Parent=MS.gene019112.t1 |
| Gene Sequence |
| Protein sequence |
