Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026525.t1 | XP_013466581.1 | 96.6 | 351 | 11 | 1 | 1 | 351 | 1 | 350 | 3.20E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026525.t1 | Q8GUU2 | 62.8 | 339 | 121 | 2 | 13 | 347 | 17 | 354 | 2.6e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026525.t1 | A0A072VGQ3 | 96.6 | 351 | 11 | 1 | 1 | 351 | 1 | 350 | 2.3e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04341 | MS.gene026525 | PPI |
| MS.gene026525 | MS.gene41778 | PPI |
| MS.gene026525 | MS.gene067859 | PPI |
| MS.gene026525 | MS.gene04154 | PPI |
| MS.gene026525 | MS.gene042467 | PPI |
| MS.gene026525 | MS.gene070293 | PPI |
| MS.gene08162 | MS.gene026525 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026525.t1 | MTR_1g032440 | 97.151 | 351 | 9 | 1 | 1 | 351 | 1 | 350 | 0.0 | 709 |
| MS.gene026525.t1 | MTR_1g032440 | 96.980 | 298 | 8 | 1 | 1 | 298 | 1 | 297 | 0.0 | 592 |
| MS.gene026525.t1 | MTR_8g105330 | 69.971 | 343 | 87 | 5 | 11 | 351 | 8 | 336 | 3.80e-171 | 479 |
| MS.gene026525.t1 | MTR_4g102870 | 48.907 | 366 | 160 | 10 | 12 | 351 | 7 | 371 | 3.11e-113 | 334 |
| MS.gene026525.t1 | MTR_5g010720 | 51.320 | 341 | 143 | 6 | 34 | 351 | 47 | 387 | 1.12e-101 | 305 |
| MS.gene026525.t1 | MTR_7g076010 | 51.118 | 313 | 144 | 5 | 42 | 348 | 51 | 360 | 2.17e-90 | 275 |
| MS.gene026525.t1 | MTR_7g088500 | 46.021 | 289 | 128 | 4 | 65 | 351 | 35 | 297 | 5.01e-79 | 244 |
| MS.gene026525.t1 | MTR_1g011380 | 32.075 | 318 | 177 | 9 | 59 | 344 | 75 | 385 | 1.26e-40 | 147 |
| MS.gene026525.t1 | MTR_3g107995 | 30.897 | 301 | 174 | 9 | 70 | 344 | 69 | 361 | 1.05e-38 | 142 |
| MS.gene026525.t1 | MTR_7g088560 | 39.583 | 192 | 97 | 4 | 169 | 348 | 1 | 185 | 3.86e-35 | 127 |
| MS.gene026525.t1 | MTR_7g088570 | 39.000 | 200 | 103 | 5 | 164 | 351 | 102 | 294 | 2.56e-33 | 125 |
| MS.gene026525.t1 | MTR_5g096410 | 25.670 | 261 | 166 | 3 | 84 | 341 | 97 | 332 | 2.40e-23 | 99.4 |
| MS.gene026525.t1 | MTR_5g096410 | 26.437 | 261 | 167 | 3 | 84 | 341 | 97 | 335 | 3.05e-22 | 96.3 |
| MS.gene026525.t1 | MTR_5g096410 | 25.670 | 261 | 157 | 4 | 84 | 341 | 97 | 323 | 1.45e-21 | 94.4 |
| MS.gene026525.t1 | MTR_8g099515 | 32.000 | 125 | 77 | 3 | 225 | 341 | 255 | 379 | 9.53e-12 | 66.2 |
| MS.gene026525.t1 | MTR_8g099495 | 55.769 | 52 | 22 | 1 | 291 | 341 | 338 | 389 | 1.35e-11 | 65.5 |
| MS.gene026525.t1 | MTR_4g116460 | 52.830 | 53 | 23 | 2 | 297 | 347 | 480 | 532 | 2.76e-11 | 65.1 |
| MS.gene026525.t1 | MTR_4g116460 | 52.830 | 53 | 23 | 2 | 297 | 347 | 437 | 489 | 2.85e-11 | 65.1 |
| MS.gene026525.t1 | MTR_8g072020 | 54.545 | 55 | 23 | 2 | 296 | 348 | 440 | 494 | 8.49e-11 | 63.5 |
| MS.gene026525.t1 | MTR_8g072020 | 54.545 | 55 | 23 | 2 | 296 | 348 | 401 | 455 | 8.58e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026525.t1 | AT1G68070 | 68.035 | 341 | 95 | 5 | 12 | 350 | 14 | 342 | 2.12e-170 | 478 |
| MS.gene026525.t1 | AT2G01735 | 65.116 | 344 | 111 | 3 | 11 | 348 | 15 | 355 | 5.34e-160 | 452 |
| MS.gene026525.t1 | AT3G61180 | 51.156 | 346 | 142 | 6 | 28 | 351 | 39 | 379 | 1.43e-117 | 345 |
| MS.gene026525.t1 | AT4G11680 | 54.790 | 334 | 140 | 5 | 26 | 351 | 60 | 390 | 1.77e-109 | 325 |
| MS.gene026525.t1 | AT4G11680 | 50.413 | 363 | 140 | 6 | 26 | 351 | 60 | 419 | 4.63e-103 | 310 |
| MS.gene026525.t1 | AT2G01735 | 65.000 | 240 | 75 | 3 | 11 | 244 | 15 | 251 | 2.07e-102 | 302 |
| MS.gene026525.t1 | AT1G12760 | 51.558 | 353 | 137 | 7 | 27 | 348 | 52 | 401 | 5.41e-102 | 306 |
| MS.gene026525.t1 | AT1G12760 | 52.108 | 332 | 131 | 4 | 42 | 348 | 2 | 330 | 2.12e-101 | 302 |
| MS.gene026525.t1 | AT1G63170 | 51.603 | 343 | 138 | 5 | 32 | 348 | 33 | 373 | 5.23e-95 | 288 |
| MS.gene026525.t1 | AT4G32600 | 29.316 | 307 | 187 | 8 | 70 | 351 | 113 | 414 | 3.61e-41 | 150 |
| MS.gene026525.t1 | AT4G32600 | 29.316 | 307 | 187 | 8 | 70 | 351 | 113 | 414 | 3.61e-41 | 150 |
| MS.gene026525.t1 | AT1G80400 | 28.099 | 363 | 209 | 10 | 20 | 344 | 51 | 399 | 1.20e-40 | 147 |
| MS.gene026525.t1 | AT5G55970 | 27.138 | 269 | 161 | 6 | 81 | 344 | 103 | 341 | 1.83e-24 | 102 |
| MS.gene026525.t1 | AT5G55970 | 27.138 | 269 | 161 | 6 | 81 | 344 | 103 | 341 | 1.83e-24 | 102 |
| MS.gene026525.t1 | AT4G26580 | 27.037 | 270 | 156 | 7 | 81 | 344 | 99 | 333 | 2.16e-24 | 102 |
| MS.gene026525.t1 | AT4G26580 | 27.037 | 270 | 156 | 7 | 81 | 344 | 99 | 333 | 2.16e-24 | 102 |
| MS.gene026525.t1 | AT1G55530 | 28.846 | 104 | 72 | 1 | 241 | 344 | 133 | 234 | 6.45e-12 | 66.2 |
| MS.gene026525.t1 | AT1G55530 | 30.612 | 98 | 66 | 1 | 247 | 344 | 172 | 267 | 1.34e-11 | 65.5 |
| MS.gene026525.t1 | AT1G55530 | 30.612 | 98 | 66 | 1 | 247 | 344 | 172 | 267 | 1.34e-11 | 65.5 |
Find 99 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTCGAAATCTGTATTT+TGG | 0.183808 | 1.1:-17430922 | None:intergenic |
| ATTCTTCATGCATAATAAAA+TGG | 0.229080 | 1.1:+17431825 | MS.gene026525:CDS |
| TGCCATCTTCTGTGTTGTTT+TGG | 0.232051 | 1.1:+17430705 | MS.gene026525:CDS |
| GTATGCACTGGTGGTTTCTA+TGG | 0.288910 | 1.1:-17430989 | None:intergenic |
| CGATGTGAATCAATAAATAC+TGG | 0.291284 | 1.1:+17429765 | MS.gene026525:CDS |
| ACTTCCCTCGCTCAGCTTCT+CGG | 0.363663 | 1.1:+17427812 | MS.gene026525:CDS |
| GCTATTCTCTATGCTGTTGC+GGG | 0.374371 | 1.1:+17430775 | MS.gene026525:CDS |
| TTGAGTATCACCGCCGTAAT+CGG | 0.376851 | 1.1:+17428086 | MS.gene026525:CDS |
| ATACTGGGGTTTCATTCCTT+TGG | 0.381940 | 1.1:+17429781 | MS.gene026525:CDS |
| CTGGGGTTTCATTCCTTTGG+TGG | 0.384225 | 1.1:+17429784 | MS.gene026525:CDS |
| TCCGCGAATCCCTCCGATTA+CGG | 0.391692 | 1.1:-17428099 | None:intergenic |
| CGAAGAACGTCGTGCCGATT+GGG | 0.394795 | 1.1:+17427895 | MS.gene026525:CDS |
| GATGGTTGCAGGGAAGAGTA+TGG | 0.396930 | 1.1:-17431796 | None:intergenic |
| GGTTTCATTCCTTTGGTGGA+TGG | 0.399167 | 1.1:+17429788 | MS.gene026525:CDS |
| TTCATTCCTTTGGTGGATGG+TGG | 0.402298 | 1.1:+17429791 | MS.gene026525:CDS |
| CGAACATGCCGATCCGCGTT+TGG | 0.419996 | 1.1:+17428014 | MS.gene026525:CDS |
| TCTCTATGCTGTTGCGGGAC+AGG | 0.424869 | 1.1:+17430780 | MS.gene026525:CDS |
| CATGGCGTTCGTTGTGGTAT+CGG | 0.429763 | 1.1:+17427958 | MS.gene026525:CDS |
| CAAACGCGGATCGGCATGTT+CGG | 0.442712 | 1.1:-17428013 | None:intergenic |
| GGGATTCGCGGAGGAGGCAG+AGG | 0.449417 | 1.1:+17428110 | MS.gene026525:CDS |
| TCATTCCTTTGGTGGATGGT+GGG | 0.449593 | 1.1:+17429792 | MS.gene026525:CDS |
| GTTCACGCGCCGCCGTTTCG+CGG | 0.451877 | 1.1:-17427871 | None:intergenic |
| AGAATGGAAATGATGGTTGC+AGG | 0.452786 | 1.1:-17431807 | None:intergenic |
| GAGAAGGATAGTGGTGGAGC+TGG | 0.468638 | 1.1:+17430955 | MS.gene026525:CDS |
| AGCTCTACTCCATCTTCATA+TGG | 0.474255 | 1.1:-17431773 | None:intergenic |
| CAGCTTCTCGGACGCGCCAC+CGG | 0.476801 | 1.1:+17427824 | MS.gene026525:CDS |
| ATTTATTGATTCACATCGCT+TGG | 0.476837 | 1.1:-17429760 | None:intergenic |
| GCGCCGCCGTTTCGCGGACC+AGG | 0.477189 | 1.1:-17427865 | None:intergenic |
| TATTCTCAAGGGAAACGAAC+AGG | 0.479763 | 1.1:+17431886 | MS.gene026525:CDS |
| CATGAAGGCAACGGCGGTGG+CGG | 0.483078 | 1.1:+17427782 | MS.gene026525:CDS |
| ATCCGTCCTGGTCCGCGAAA+CGG | 0.483903 | 1.1:+17427859 | MS.gene026525:CDS |
| TGCTATTCTCTATGCTGTTG+CGG | 0.491315 | 1.1:+17430774 | MS.gene026525:CDS |
| AACAATGAGGAGAAGGATAG+TGG | 0.493619 | 1.1:+17430946 | MS.gene026525:CDS |
| TGCCAAAACAACACAGAAGA+TGG | 0.498684 | 1.1:-17430707 | None:intergenic |
| GACGGATGGTCCTCTTCGTC+CGG | 0.501308 | 1.1:-17427843 | None:intergenic |
| CATCATGAAGGCAACGGCGG+TGG | 0.503117 | 1.1:+17427779 | MS.gene026525:CDS |
| AAGATGCTCCACGCTTGTAC+TGG | 0.503612 | 1.1:+17429853 | MS.gene026525:CDS |
| TCGAAGAACGTCGTGCCGAT+TGG | 0.504046 | 1.1:+17427894 | MS.gene026525:CDS |
| GCTCGACATGTCGTGGAACA+TGG | 0.511175 | 1.1:+17427940 | MS.gene026525:CDS |
| ATCGGAGGGATTCGCGGAGG+AGG | 0.513459 | 1.1:+17428104 | MS.gene026525:CDS |
| GCCGTAATCGGAGGGATTCG+CGG | 0.515119 | 1.1:+17428098 | MS.gene026525:CDS |
| TTGTAAGTACAATATTCTCA+AGG | 0.522566 | 1.1:+17431874 | MS.gene026525:CDS |
| GGAAATCATACCGCATCCTC+AGG | 0.524464 | 1.1:-17431036 | None:intergenic |
| GAAGCTGAGCGAGGGAAGTA+CGG | 0.525268 | 1.1:-17427808 | None:intergenic |
| ATAGAGAATAGCAATGATGC+AGG | 0.528520 | 1.1:-17430764 | None:intergenic |
| ACGTGAACTCGTCTCAGTCC+AGG | 0.533200 | 1.1:+17428188 | MS.gene026525:CDS |
| CCGATCCGCGTTTGGATCGT+CGG | 0.534490 | 1.1:+17428022 | MS.gene026525:CDS |
| TTGTACATGTTGTCTTGGTG+TGG | 0.534657 | 1.1:+17428062 | MS.gene026525:CDS |
| TAGTGGTGGAGCTGGATCAA+TGG | 0.540698 | 1.1:+17430963 | MS.gene026525:CDS |
| GACATGTCGAGCGCTACGAC+TGG | 0.542175 | 1.1:-17427929 | None:intergenic |
| AGTATCACCGCCGTAATCGG+AGG | 0.542558 | 1.1:+17428089 | MS.gene026525:CDS |
| TGCCTCTGTCCATATGAAGA+TGG | 0.543393 | 1.1:+17431764 | MS.gene026525:CDS |
| ACGAAGAGGACCATCCGTCC+TGG | 0.543673 | 1.1:+17427847 | MS.gene026525:CDS |
| AGTTGCCATGTATGCACTGG+TGG | 0.544429 | 1.1:-17430998 | None:intergenic |
| AGAAACCACCAGTGCATACA+TGG | 0.546021 | 1.1:+17430993 | MS.gene026525:CDS |
| AATATCAAACAATGAGGAGA+AGG | 0.552713 | 1.1:+17430939 | MS.gene026525:CDS |
| AGAATATTGTACTTACAAAG+AGG | 0.557808 | 1.1:-17431869 | None:intergenic |
| CGCCGTTTCGCGGACCAGGA+CGG | 0.558450 | 1.1:-17427861 | None:intergenic |
| TGTAAGTACAATATTCTCAA+GGG | 0.561290 | 1.1:+17431875 | MS.gene026525:CDS |
| GAGCGGAGAAGCGGTGTTTG+TGG | 0.565856 | 1.1:-17427755 | None:intergenic |
| TTCAGTTGCCATGTATGCAC+TGG | 0.568260 | 1.1:-17431001 | None:intergenic |
| CGCTCACATCATGAAGGCAA+CGG | 0.578089 | 1.1:+17427773 | MS.gene026525:CDS |
| TGCATGAAGAATGGAAATGA+TGG | 0.580086 | 1.1:-17431814 | None:intergenic |
| CGCGTCCGAGAAGCTGAGCG+AGG | 0.580325 | 1.1:-17427817 | None:intergenic |
| CCGACGATCCAAACGCGGAT+CGG | 0.580794 | 1.1:-17428022 | None:intergenic |
| GGACGCGCCACCGGACGAAG+AGG | 0.583915 | 1.1:+17427833 | MS.gene026525:CDS |
| TATGCACTGGTGGTTTCTAT+GGG | 0.584259 | 1.1:-17430988 | None:intergenic |
| TCGTAGCGCTCGACATGTCG+TGG | 0.586584 | 1.1:+17427933 | MS.gene026525:CDS |
| TGGCTTCGAGTATCCCCAAT+CGG | 0.586699 | 1.1:-17427909 | None:intergenic |
| GTGGAACATGGCGTTCGTTG+TGG | 0.589906 | 1.1:+17427952 | MS.gene026525:CDS |
| CTTCTCCGCTCACATCATGA+AGG | 0.590176 | 1.1:+17427767 | MS.gene026525:CDS |
| GAAGAACGTCGTGCCGATTG+GGG | 0.594506 | 1.1:+17427896 | MS.gene026525:CDS |
| GGATGGTCCTCTTCGTCCGG+TGG | 0.596489 | 1.1:-17427840 | None:intergenic |
| GATGTGAATCAATAAATACT+GGG | 0.596572 | 1.1:+17429766 | MS.gene026525:CDS |
| GAATGGAAATGATGGTTGCA+GGG | 0.597135 | 1.1:-17431806 | None:intergenic |
| GTTTCGCGGACCAGGACGGA+TGG | 0.597219 | 1.1:-17427857 | None:intergenic |
| GTATCACCGCCGTAATCGGA+GGG | 0.597390 | 1.1:+17428090 | MS.gene026525:CDS |
| AGCGTGGAGCATCTTGCAGA+AGG | 0.597658 | 1.1:-17429845 | None:intergenic |
| CGTCCTGGTCCGCGAAACGG+CGG | 0.602812 | 1.1:+17427862 | MS.gene026525:CDS |
| GCGTCCGAGAAGCTGAGCGA+GGG | 0.602931 | 1.1:-17427816 | None:intergenic |
| TCATGATGTGAGCGGAGAAG+CGG | 0.615465 | 1.1:-17427764 | None:intergenic |
| CATGTTCGGATGCTCGTCAA+CGG | 0.617231 | 1.1:-17427999 | None:intergenic |
| GGATTCGCGGAGGAGGCAGA+GGG | 0.630882 | 1.1:+17428111 | MS.gene026525:CDS |
| AAAAGCCCACCATCCACCAA+AGG | 0.634811 | 1.1:-17429797 | None:intergenic |
| GATGCTGAATTCAGTTCCGA+CGG | 0.635749 | 1.1:+17428139 | MS.gene026525:CDS |
| GTCATCACTATCGTTACCGT+CGG | 0.642079 | 1.1:-17428155 | None:intergenic |
| CTCCATCTTCATATGGACAG+AGG | 0.658470 | 1.1:-17431766 | None:intergenic |
| AAAGCTTACCAGTACAAGCG+TGG | 0.660127 | 1.1:-17429861 | None:intergenic |
| AACGATAGTGATGACAGCGA+TGG | 0.663555 | 1.1:+17428163 | MS.gene026525:CDS |
| GCGAATCCCTCCGATTACGG+CGG | 0.668033 | 1.1:-17428096 | None:intergenic |
| CGTTGCCTTCATGATGTGAG+CGG | 0.668534 | 1.1:-17427772 | None:intergenic |
| ATTTCGAATATCAAACAATG+AGG | 0.669915 | 1.1:+17430933 | MS.gene026525:CDS |
| TAGAGAATAGCAATGATGCA+GGG | 0.670826 | 1.1:-17430763 | None:intergenic |
| AATGAGGAGAAGGATAGTGG+TGG | 0.671940 | 1.1:+17430949 | MS.gene026525:CDS |
| CGTAACCGACGATCCAAACG+CGG | 0.684216 | 1.1:-17428027 | None:intergenic |
| ATGTGAATCAATAAATACTG+GGG | 0.688287 | 1.1:+17429767 | MS.gene026525:CDS |
| TCACATCATGAAGGCAACGG+CGG | 0.699092 | 1.1:+17427776 | MS.gene026525:CDS |
| GTAATCGGAGGGATTCGCGG+AGG | 0.737387 | 1.1:+17428101 | MS.gene026525:CDS |
| GGTATCGGCAGTGATGCTTG+CGG | 0.745838 | 1.1:+17427973 | MS.gene026525:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATAACATATAACAT+AGG | + | chr1.1:17428558-17428577 | MS.gene026525:intron | 10.0% |
| !!! | ATATATATATTTGTTGATTT+TGG | + | chr1.1:17430027-17430046 | MS.gene026525:intron | 10.0% |
| !!! | TATAAGAAGTTAAATTTTAA+AGG | + | chr1.1:17431367-17431386 | MS.gene026525:intron | 10.0% |
| !! | AAATAAATAGAACAATTAGA+AGG | - | chr1.1:17430851-17430870 | None:intergenic | 15.0% |
| !! | AAATGCATAATTCAATTAAA+AGG | - | chr1.1:17430179-17430198 | None:intergenic | 15.0% |
| !! | ATTTATTTGAGAGATAAAAT+TGG | - | chr1.1:17430502-17430521 | None:intergenic | 15.0% |
| !!! | AAAATTTAACTTCTTATAAC+AGG | - | chr1.1:17431365-17431384 | None:intergenic | 15.0% |
| !!! | AAATTTAACTTCTTATAACA+GGG | - | chr1.1:17431364-17431383 | None:intergenic | 15.0% |
| !!! | AATTTTATCTCTCAAATAAA+TGG | + | chr1.1:17430501-17430520 | MS.gene026525:intron | 15.0% |
| !!! | ATAAAAATTTTCTTGATCAA+AGG | + | chr1.1:17430341-17430360 | MS.gene026525:intron | 15.0% |
| !!! | CATTATTTGAAACTTTTTTT+TGG | + | chr1.1:17431447-17431466 | MS.gene026525:intron | 15.0% |
| !! | AAAATCAAATAAAATTCACC+TGG | - | chr1.1:17428209-17428228 | None:intergenic | 20.0% |
| !! | AATGCAGAATTAATATCATA+AGG | - | chr1.1:17428325-17428344 | None:intergenic | 20.0% |
| !! | ACTTGAAATACAAGTATATA+AGG | - | chr1.1:17430214-17430233 | None:intergenic | 20.0% |
| !! | AGTGACTAAAATATAAAATC+AGG | - | chr1.1:17431149-17431168 | None:intergenic | 20.0% |
| !! | AGTTTCTTCTAAATATTTCT+TGG | + | chr1.1:17431608-17431627 | MS.gene026525:intron | 20.0% |
| !! | ATGCATGTTAAAAGAAAAAA+GGG | + | chr1.1:17431528-17431547 | MS.gene026525:intron | 20.0% |
| !! | ATTCTTCATGCATAATAAAA+TGG | + | chr1.1:17431825-17431844 | MS.gene026525:CDS | 20.0% |
| !! | GGTATGAATAAAAAATAGTT+TGG | + | chr1.1:17430801-17430820 | MS.gene026525:intron | 20.0% |
| !! | GTGACTAAAATATAAAATCA+GGG | - | chr1.1:17431148-17431167 | None:intergenic | 20.0% |
| !! | TAATATATATTACGTAGCTA+TGG | - | chr1.1:17429047-17429066 | None:intergenic | 20.0% |
| !! | TATGTAGTGTAAAAAATTCA+TGG | - | chr1.1:17429396-17429415 | None:intergenic | 20.0% |
| !! | TATTTATAGATGACCAAAAT+GGG | + | chr1.1:17430546-17430565 | MS.gene026525:intron | 20.0% |
| !! | TCAGTTCTTGATATAAAAAA+TGG | - | chr1.1:17429124-17429143 | None:intergenic | 20.0% |
| !! | TGTGTAATGTAAATATAAGT+TGG | + | chr1.1:17429069-17429088 | MS.gene026525:intron | 20.0% |
| !! | TTAGACTTTACAATGAATTT+GGG | + | chr1.1:17428517-17428536 | MS.gene026525:intron | 20.0% |
| !! | TTTAGACTTTACAATGAATT+TGG | + | chr1.1:17428516-17428535 | MS.gene026525:intron | 20.0% |
| !! | TTTCAAATAATGCAATCAAT+TGG | - | chr1.1:17431439-17431458 | None:intergenic | 20.0% |
| !!! | AATTTGAGTTAAACAAACAA+CGG | + | chr1.1:17431311-17431330 | MS.gene026525:intron | 20.0% |
| !!! | AATTTTTTTTTTGCATGCTA+GGG | + | chr1.1:17428262-17428281 | MS.gene026525:intron | 20.0% |
| !!! | AGATTTGTAGATACTTATTT+TGG | + | chr1.1:17429718-17429737 | MS.gene026525:intron | 20.0% |
| !!! | ATTTCATTTTGAGTGAATAT+AGG | + | chr1.1:17430867-17430886 | MS.gene026525:intron | 20.0% |
| !!! | ATTTTATTATGCATGAAGAA+TGG | - | chr1.1:17431826-17431845 | None:intergenic | 20.0% |
| !!! | CACAAATTTCTAAAATATCA+AGG | - | chr1.1:17431271-17431290 | None:intergenic | 20.0% |
| !!! | TCTAAAACAAACAATTCAAA+AGG | - | chr1.1:17430083-17430102 | None:intergenic | 20.0% |
| ! | AAAGAAAAGTGAACAAAAGT+GGG | + | chr1.1:17428691-17428710 | MS.gene026525:intron | 25.0% |
| ! | AATGGAAATCAATTGTTCAA+TGG | + | chr1.1:17431111-17431130 | MS.gene026525:intron | 25.0% |
| ! | ACCAGGTTTATTTAAATATC+AGG | - | chr1.1:17429312-17429331 | None:intergenic | 25.0% |
| ! | ACGAATTTGAAAAATCATCT+TGG | - | chr1.1:17430289-17430308 | None:intergenic | 25.0% |
| ! | ACTGAAATAAATTGTGTTTC+AGG | - | chr1.1:17431060-17431079 | None:intergenic | 25.0% |
| ! | AGAATATTGTACTTACAAAG+AGG | - | chr1.1:17431872-17431891 | None:intergenic | 25.0% |
| ! | ATGTGAATCAATAAATACTG+GGG | + | chr1.1:17429767-17429786 | MS.gene026525:CDS | 25.0% |
| ! | ATTTCGAATATCAAACAATG+AGG | + | chr1.1:17430933-17430952 | MS.gene026525:CDS | 25.0% |
| ! | CAATCAATCTCATTAAAACT+TGG | - | chr1.1:17428468-17428487 | None:intergenic | 25.0% |
| ! | GATGCATGTTAAAAGAAAAA+AGG | + | chr1.1:17431527-17431546 | MS.gene026525:intron | 25.0% |
| ! | GATGTGAATCAATAAATACT+GGG | + | chr1.1:17429766-17429785 | MS.gene026525:CDS | 25.0% |
| ! | GTATTTATAGATGACCAAAA+TGG | + | chr1.1:17430545-17430564 | MS.gene026525:intron | 25.0% |
| ! | GTCTATTAAGATTATGTTGA+TGG | + | chr1.1:17431576-17431595 | MS.gene026525:intron | 25.0% |
| ! | TAGACTTTACAATGAATTTG+GGG | + | chr1.1:17428518-17428537 | MS.gene026525:intron | 25.0% |
| ! | TATCCTCTCTTATAAACAAA+GGG | - | chr1.1:17430127-17430146 | None:intergenic | 25.0% |
| ! | TCCTGATATTTAAATAAACC+TGG | + | chr1.1:17429308-17429327 | MS.gene026525:intron | 25.0% |
| ! | TGATATTTAAATAAACCTGG+TGG | + | chr1.1:17429311-17429330 | MS.gene026525:intron | 25.0% |
| ! | TGTAAGTACAATATTCTCAA+GGG | + | chr1.1:17431875-17431894 | MS.gene026525:CDS | 25.0% |
| ! | TTATAACAGGGATACAAAAA+GGG | - | chr1.1:17431352-17431371 | None:intergenic | 25.0% |
| ! | TTCTAAATATTTCTTGGAAG+AGG | + | chr1.1:17431614-17431633 | MS.gene026525:intron | 25.0% |
| ! | TTGTAAGTACAATATTCTCA+AGG | + | chr1.1:17431874-17431893 | MS.gene026525:CDS | 25.0% |
| !! | AAACTCTGAAAATTGTAAGT+TGG | - | chr1.1:17431699-17431718 | None:intergenic | 25.0% |
| !! | GATATTCGAAATCTGTATTT+TGG | - | chr1.1:17430925-17430944 | None:intergenic | 25.0% |
| !! | TTCTTTTAGTACTAAAGGAT+GGG | + | chr1.1:17431485-17431504 | MS.gene026525:intron | 25.0% |
| !! | TTTTGTGCAATTATTCAATG+TGG | + | chr1.1:17429174-17429193 | MS.gene026525:intron | 25.0% |
| !!! | AAAATTGTAAGTTGGTTTCT+GGG | - | chr1.1:17431691-17431710 | None:intergenic | 25.0% |
| !!! | AATTGTTTGTTTTAGAGAGA+CGG | + | chr1.1:17430087-17430106 | MS.gene026525:intron | 25.0% |
| !!! | ACTTGTTTTTGAATCTTTAC+AGG | + | chr1.1:17430647-17430666 | MS.gene026525:intron | 25.0% |
| !!! | AGAATATTTGCTATTTGTAC+CGG | + | chr1.1:17429970-17429989 | MS.gene026525:intron | 25.0% |
| !!! | CAATTTTTTTTTTGCATGCT+AGG | + | chr1.1:17428261-17428280 | MS.gene026525:intron | 25.0% |
| !!! | CGTAAATTTCAAAAGTACTA+GGG | + | chr1.1:17430306-17430325 | MS.gene026525:intron | 25.0% |
| !!! | GTAGTTACTCAATTTTTTCT+AGG | + | chr1.1:17430568-17430587 | MS.gene026525:intron | 25.0% |
| !!! | TAAATTTTAAAGGCACAAAG+AGG | + | chr1.1:17431377-17431396 | MS.gene026525:intron | 25.0% |
| !!! | TATATTTGTTGATTTTGGAG+TGG | + | chr1.1:17430032-17430051 | MS.gene026525:intron | 25.0% |
| !!! | TCGTAAATTTCAAAAGTACT+AGG | + | chr1.1:17430305-17430324 | MS.gene026525:intron | 25.0% |
| !!! | TTTGTTTTTAAGGGCATTTT+TGG | + | chr1.1:17428929-17428948 | MS.gene026525:intron | 25.0% |
| AATATCAAACAATGAGGAGA+AGG | + | chr1.1:17430939-17430958 | MS.gene026525:CDS | 30.0% | |
| AATTGTTCAATGGAAATCAG+TGG | + | chr1.1:17431121-17431140 | MS.gene026525:intron | 30.0% | |
| ACAAAGAGGTTACAACTTTA+TGG | + | chr1.1:17431391-17431410 | MS.gene026525:intron | 30.0% | |
| CGATGTGAATCAATAAATAC+TGG | + | chr1.1:17429765-17429784 | MS.gene026525:CDS | 30.0% | |
| CTAGCAAATAAACTGATAGT+AGG | + | chr1.1:17431552-17431571 | MS.gene026525:intron | 30.0% | |
| CTTATAACAGGGATACAAAA+AGG | - | chr1.1:17431353-17431372 | None:intergenic | 30.0% | |
| GAAAGAAAAGTGAACAAAAG+TGG | + | chr1.1:17428690-17428709 | MS.gene026525:intron | 30.0% | |
| GTATCCTCTCTTATAAACAA+AGG | - | chr1.1:17430128-17430147 | None:intergenic | 30.0% | |
| GTATGTATAGATATGTGGTT+GGG | + | chr1.1:17429655-17429674 | MS.gene026525:intron | 30.0% | |
| GTTTCATTAGCATTTGTGTA+TGG | + | chr1.1:17429490-17429509 | MS.gene026525:intron | 30.0% | |
| TAGCTGTATGTATAGATATG+TGG | + | chr1.1:17429650-17429669 | MS.gene026525:intron | 30.0% | |
| TATAAATGGACGACCAAAAT+TGG | - | chr1.1:17430367-17430386 | None:intergenic | 30.0% | |
| TATTTAAATAAACCTGGTGG+AGG | + | chr1.1:17429314-17429333 | MS.gene026525:intron | 30.0% | |
| TGCTAATGAAACTACAAGAT+AGG | - | chr1.1:17429482-17429501 | None:intergenic | 30.0% | |
| TGTATGTATAGATATGTGGT+TGG | + | chr1.1:17429654-17429673 | MS.gene026525:intron | 30.0% | |
| TTAAAAACAAACGTTCCAGA+GGG | - | chr1.1:17428920-17428939 | None:intergenic | 30.0% | |
| TTAGCATTTGTGTATGGAAT+CGG | + | chr1.1:17429496-17429515 | MS.gene026525:intron | 30.0% | |
| TTCTATTCTATTGTGGTAAG+TGG | - | chr1.1:17430266-17430285 | None:intergenic | 30.0% | |
| TTTGTTGCTGTACTAATGAA+AGG | + | chr1.1:17430620-17430639 | MS.gene026525:intron | 30.0% | |
| ! | AATTGAGTAACTACCCATTT+TGG | - | chr1.1:17430562-17430581 | None:intergenic | 30.0% |
| ! | AATTGATCACTTCTGAGAAA+TGG | + | chr1.1:17431093-17431112 | MS.gene026525:intron | 30.0% |
| ! | ATACCCTTTGTTTATAAGAG+AGG | + | chr1.1:17430121-17430140 | MS.gene026525:intron | 30.0% |
| ! | ATTCTAAGGGTTTCAAATGA+AGG | - | chr1.1:17428894-17428913 | None:intergenic | 30.0% |
| ! | CTTCTTTTAGTACTAAAGGA+TGG | + | chr1.1:17431484-17431503 | MS.gene026525:intron | 30.0% |
| ! | GTAAATATAAGTTGGCATTG+AGG | + | chr1.1:17429077-17429096 | MS.gene026525:intron | 30.0% |
| ! | GTCACTTCTTTTAGTACTAA+AGG | + | chr1.1:17431480-17431499 | MS.gene026525:intron | 30.0% |
| !! | ATCTTGGTTCTATTCTATTG+TGG | - | chr1.1:17430273-17430292 | None:intergenic | 30.0% |
| !! | ATTTATTGATTCACATCGCT+TGG | - | chr1.1:17429763-17429782 | None:intergenic | 30.0% |
| !! | CATTTTGAGTGAATATAGGA+AGG | + | chr1.1:17430871-17430890 | MS.gene026525:intron | 30.0% |
| !! | GAAAATTGTAAGTTGGTTTC+TGG | - | chr1.1:17431692-17431711 | None:intergenic | 30.0% |
| !! | TAAACAAAGGGTATTGAAGA+AGG | - | chr1.1:17430115-17430134 | None:intergenic | 30.0% |
| !!! | AAGGGCATTTTTGGATTTTT+GGG | + | chr1.1:17428938-17428957 | MS.gene026525:intron | 30.0% |
| !!! | CTCGATCTTGTTCTTTTTTA+AGG | - | chr1.1:17430457-17430476 | None:intergenic | 30.0% |
| !!! | TAAGGGCATTTTTGGATTTT+TGG | + | chr1.1:17428937-17428956 | MS.gene026525:intron | 30.0% |
| !!! | TATTTGCTGTTTTGCATTTC+AGG | + | chr1.1:17431730-17431749 | MS.gene026525:intron | 30.0% |
| !!! | TATTTTTTCTAGAAGAGCTC+AGG | - | chr1.1:17431660-17431679 | None:intergenic | 30.0% |
| !!! | TCTGGAACGTTTGTTTTTAA+GGG | + | chr1.1:17428920-17428939 | MS.gene026525:intron | 30.0% |
| !!! | TCTTGTTCTTTTTTAAGGAC+TGG | - | chr1.1:17430452-17430471 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTAAGGACTGGTT+GGG | - | chr1.1:17430447-17430466 | None:intergenic | 30.0% |
| AAAAACGTGAGAAGAGAAAG+TGG | + | chr1.1:17428621-17428640 | MS.gene026525:intron | 35.0% | |
| AAAACGTGAGAAGAGAAAGT+GGG | + | chr1.1:17428622-17428641 | MS.gene026525:intron | 35.0% | |
| ACAAGATCGAGTCCATTAAT+TGG | + | chr1.1:17430466-17430485 | MS.gene026525:intron | 35.0% | |
| ACATCAGATAATGTGAGGAA+TGG | - | chr1.1:17429535-17429554 | None:intergenic | 35.0% | |
| AGGAACTTTGTTGAAGATGT+AGG | + | chr1.1:17431634-17431653 | MS.gene026525:intron | 35.0% | |
| AGTCCATTAATTGGTACCAA+AGG | + | chr1.1:17430475-17430494 | MS.gene026525:intron | 35.0% | |
| ATAGAGAATAGCAATGATGC+AGG | - | chr1.1:17430767-17430786 | None:intergenic | 35.0% | |
| ATATAGTGCAAGTGATGCAA+TGG | - | chr1.1:17429259-17429278 | None:intergenic | 35.0% | |
| ATTAACATGCATTAGCAGCA+AGG | - | chr1.1:17429624-17429643 | None:intergenic | 35.0% | |
| CATACAGATGCGGTTATAAA+TGG | - | chr1.1:17430408-17430427 | None:intergenic | 35.0% | |
| CATTTATAACCGCATCTGTA+TGG | + | chr1.1:17430406-17430425 | MS.gene026525:intron | 35.0% | |
| CCAAAAGATGCGGTTATAAA+TGG | - | chr1.1:17430381-17430400 | None:intergenic | 35.0% | |
| CCACTAGTTGTTAAATATGC+AGG | - | chr1.1:17430150-17430169 | None:intergenic | 35.0% | |
| CCTGCATATTTAACAACTAG+TGG | + | chr1.1:17430147-17430166 | MS.gene026525:intron | 35.0% | |
| CTTAAAAACAAACGTTCCAG+AGG | - | chr1.1:17428921-17428940 | None:intergenic | 35.0% | |
| GAGAGATAAAATTGGTCCTT+TGG | - | chr1.1:17430494-17430513 | None:intergenic | 35.0% | |
| GTGTAAAAAATTCATGGTGC+AGG | - | chr1.1:17429390-17429409 | None:intergenic | 35.0% | |
| TAAAAACAAACGTTCCAGAG+GGG | - | chr1.1:17428919-17428938 | None:intergenic | 35.0% | |
| TAGAGAATAGCAATGATGCA+GGG | - | chr1.1:17430766-17430785 | None:intergenic | 35.0% | |
| TGCATGAAGAATGGAAATGA+TGG | - | chr1.1:17431817-17431836 | None:intergenic | 35.0% | |
| TTGAGTTAAACAAACAACGG+CGG | + | chr1.1:17431314-17431333 | MS.gene026525:intron | 35.0% | |
| ! | AATACTTTTACCTGAGGATG+CGG | + | chr1.1:17431026-17431045 | MS.gene026525:CDS | 35.0% |
| ! | ATAGACACATGTGCATTTTC+AGG | - | chr1.1:17430007-17430026 | None:intergenic | 35.0% |
| ! | CCATTTATAACCGCATCTTT+TGG | + | chr1.1:17430378-17430397 | MS.gene026525:intron | 35.0% |
| ! | GTGTTTTGTACATGTTGTCT+TGG | + | chr1.1:17428057-17428076 | MS.gene026525:CDS | 35.0% |
| ! | GTTTTTGAATCTTTACAGGC+TGG | + | chr1.1:17430651-17430670 | MS.gene026525:intron | 35.0% |
| ! | TCACGTTTTTCTTTCACTCT+CGG | - | chr1.1:17428611-17428630 | None:intergenic | 35.0% |
| ! | TCTTGATCAAAGGCCAATTT+TGG | + | chr1.1:17430351-17430370 | MS.gene026525:intron | 35.0% |
| ! | TGAACGAATACTTTTACCTG+AGG | + | chr1.1:17431020-17431039 | MS.gene026525:CDS | 35.0% |
| ! | TGTTTTCATGCATGTGAATC+TGG | + | chr1.1:17431190-17431209 | MS.gene026525:intron | 35.0% |
| ! | TTTTAGTACTAAAGGATGGG+AGG | + | chr1.1:17431488-17431507 | MS.gene026525:intron | 35.0% |
| !! | AGCTTGTCTTGTTTCTTTGA+GGG | + | chr1.1:17429019-17429038 | MS.gene026525:intron | 35.0% |
| !!! | CTCTGGAACGTTTGTTTTTA+AGG | + | chr1.1:17428919-17428938 | MS.gene026525:intron | 35.0% |
| !!! | GTTCTTTTTTAAGGACTGGT+TGG | - | chr1.1:17430448-17430467 | None:intergenic | 35.0% |
| AAAAACAAACGTTCCAGAGG+GGG | - | chr1.1:17428918-17428937 | None:intergenic | 40.0% | |
| AAATGGACGACCAAAAGATG+CGG | - | chr1.1:17430391-17430410 | None:intergenic | 40.0% | |
| AACAATGAGGAGAAGGATAG+TGG | + | chr1.1:17430946-17430965 | MS.gene026525:CDS | 40.0% | |
| AATGAAGGATGTTCGCTGTT+TGG | - | chr1.1:17428879-17428898 | None:intergenic | 40.0% | |
| ACTGCAAAAATGAATCCTGC+TGG | + | chr1.1:17429198-17429217 | MS.gene026525:intron | 40.0% | |
| AGAAAGTGGGCAAAAGAGAT+AGG | + | chr1.1:17428635-17428654 | MS.gene026525:intron | 40.0% | |
| AGAATGGAAATGATGGTTGC+AGG | - | chr1.1:17431810-17431829 | None:intergenic | 40.0% | |
| AGCTCTACTCCATCTTCATA+TGG | - | chr1.1:17431776-17431795 | None:intergenic | 40.0% | |
| ATACTGGGGTTTCATTCCTT+TGG | + | chr1.1:17429781-17429800 | MS.gene026525:CDS | 40.0% | |
| ATTTCACAACTGCTAGGTCT+TGG | - | chr1.1:17429232-17429251 | None:intergenic | 40.0% | |
| CAGGGATACAAAAAGGGAAT+AGG | - | chr1.1:17431346-17431365 | None:intergenic | 40.0% | |
| CATGTGAATCTGGTCATCAA+AGG | + | chr1.1:17431200-17431219 | MS.gene026525:intron | 40.0% | |
| CGGGCTTTCTTACACAATAA+TGG | - | chr1.1:17428591-17428610 | None:intergenic | 40.0% | |
| GAATGGAAATGATGGTTGCA+GGG | - | chr1.1:17431809-17431828 | None:intergenic | 40.0% | |
| GATTGGAAGACAATTAGTGC+TGG | + | chr1.1:17428746-17428765 | MS.gene026525:intron | 40.0% | |
| GGCAAAATTTCACAACTGCT+AGG | - | chr1.1:17429238-17429257 | None:intergenic | 40.0% | |
| GGTCCTTTGGTACCAATTAA+TGG | - | chr1.1:17430481-17430500 | None:intergenic | 40.0% | |
| GTTCACTAATGTAGGAAGCT+GGG | + | chr1.1:17428804-17428823 | MS.gene026525:intron | 40.0% | |
| TATTCTCAAGGGAAACGAAC+AGG | + | chr1.1:17431886-17431905 | MS.gene026525:CDS | 40.0% | |
| TGAGTTAAACAAACAACGGC+GGG | + | chr1.1:17431315-17431334 | MS.gene026525:intron | 40.0% | |
| TGCCAAAACAACACAGAAGA+TGG | - | chr1.1:17430710-17430729 | None:intergenic | 40.0% | |
| TGCTATTCTCTATGCTGTTG+CGG | + | chr1.1:17430774-17430793 | MS.gene026525:CDS | 40.0% | |
| TTGTACATGTTGTCTTGGTG+TGG | + | chr1.1:17428062-17428081 | MS.gene026525:CDS | 40.0% | |
| ! | ACGTGCTTTGAGTGCTATTA+CGG | + | chr1.1:17428986-17429005 | MS.gene026525:intron | 40.0% |
| ! | CACGTTTTTCTTTCACTCTC+GGG | - | chr1.1:17428610-17428629 | None:intergenic | 40.0% |
| ! | TATGCACTGGTGGTTTCTAT+GGG | - | chr1.1:17430991-17431010 | None:intergenic | 40.0% |
| !! | CTTGTCTTGTTTCTTTGAGG+GGG | + | chr1.1:17429021-17429040 | MS.gene026525:intron | 40.0% |
| !! | GAGCTTGTCTTGTTTCTTTG+AGG | + | chr1.1:17429018-17429037 | MS.gene026525:intron | 40.0% |
| !! | GCTTGTCTTGTTTCTTTGAG+GGG | + | chr1.1:17429020-17429039 | MS.gene026525:intron | 40.0% |
| !!! | GTTGTTTTGGCATGCTTGAT+CGG | + | chr1.1:17430718-17430737 | MS.gene026525:CDS | 40.0% |
| !!! | TGCCATCTTCTGTGTTGTTT+TGG | + | chr1.1:17430705-17430724 | MS.gene026525:CDS | 40.0% |
| AAAACGTCCGATGATAGTCG+TGG | - | chr1.1:17429459-17429478 | None:intergenic | 45.0% | |
| AAAGCTTACCAGTACAAGCG+TGG | - | chr1.1:17429864-17429883 | None:intergenic | 45.0% | |
| AACAAAAGTGGGCAGAAGAG+TGG | + | chr1.1:17428702-17428721 | MS.gene026525:intron | 45.0% | |
| AACGATAGTGATGACAGCGA+TGG | + | chr1.1:17428163-17428182 | MS.gene026525:CDS | 45.0% | |
| AAGCTGGGCTGTGTGAATTA+TGG | + | chr1.1:17428819-17428838 | MS.gene026525:intron | 45.0% | |
| ACTCAAAGCACGTGACAAGA+GGG | - | chr1.1:17428979-17428998 | None:intergenic | 45.0% | |
| AGAAACCACCAGTGCATACA+TGG | + | chr1.1:17430993-17431012 | MS.gene026525:CDS | 45.0% | |
| CTATCATTGAGAAGCTCTGC+CGG | + | chr1.1:17429348-17429367 | MS.gene026525:intron | 45.0% | |
| CTCCATCTTCATATGGACAG+AGG | - | chr1.1:17431769-17431788 | None:intergenic | 45.0% | |
| GATGCTGAATTCAGTTCCGA+CGG | + | chr1.1:17428139-17428158 | MS.gene026525:CDS | 45.0% | |
| GCAGAGCTTCTCAATGATAG+GGG | - | chr1.1:17429348-17429367 | None:intergenic | 45.0% | |
| GCAGCAAGGTCATTTAGAAG+AGG | - | chr1.1:17429610-17429629 | None:intergenic | 45.0% | |
| GCGCTTGAGTCTACATAAGT+AGG | - | chr1.1:17429944-17429963 | None:intergenic | 45.0% | |
| GCTATTCTCTATGCTGTTGC+GGG | + | chr1.1:17430775-17430794 | MS.gene026525:CDS | 45.0% | |
| GGCAGAGCTTCTCAATGATA+GGG | - | chr1.1:17429349-17429368 | None:intergenic | 45.0% | |
| GGGCAAAAGAGATAGGTAGA+GGG | + | chr1.1:17428642-17428661 | MS.gene026525:intron | 45.0% | |
| GGTTCACTAATGTAGGAAGC+TGG | + | chr1.1:17428803-17428822 | MS.gene026525:intron | 45.0% | |
| GGTTTCATTCCTTTGGTGGA+TGG | + | chr1.1:17429788-17429807 | MS.gene026525:CDS | 45.0% | |
| GTCATCACTATCGTTACCGT+CGG | - | chr1.1:17428158-17428177 | None:intergenic | 45.0% | |
| GTTACACGCAGCTACATCAA+GGG | + | chr1.1:17429428-17429447 | MS.gene026525:intron | 45.0% | |
| TGCCTCTGTCCATATGAAGA+TGG | + | chr1.1:17431764-17431783 | MS.gene026525:CDS | 45.0% | |
| TGCGGACATCAGATAATGTG+AGG | - | chr1.1:17429540-17429559 | None:intergenic | 45.0% | |
| TGGGCAAAAGAGATAGGTAG+AGG | + | chr1.1:17428641-17428660 | MS.gene026525:intron | 45.0% | |
| TGTTACACGCAGCTACATCA+AGG | + | chr1.1:17429427-17429446 | MS.gene026525:intron | 45.0% | |
| TTACACGCAGCTACATCAAG+GGG | + | chr1.1:17429429-17429448 | MS.gene026525:intron | 45.0% | |
| TTATCTGATGTCCGCAGAAC+AGG | + | chr1.1:17429544-17429563 | MS.gene026525:intron | 45.0% | |
| TTCAGTTGCCATGTATGCAC+TGG | - | chr1.1:17431004-17431023 | None:intergenic | 45.0% | |
| TTCCAGAGGGGGAATTCTAA+GGG | - | chr1.1:17428907-17428926 | None:intergenic | 45.0% | |
| TTGAGTATCACCGCCGTAAT+CGG | + | chr1.1:17428086-17428105 | MS.gene026525:CDS | 45.0% | |
| TTGTCTTCCAATCGCCACTT+TGG | - | chr1.1:17428739-17428758 | None:intergenic | 45.0% | |
| ! | AATGAGGAGAAGGATAGTGG+TGG | + | chr1.1:17430949-17430968 | MS.gene026525:CDS | 45.0% |
| ! | CTGTGGCACACTTTGGAAAA+AGG | + | chr1.1:17429568-17429587 | MS.gene026525:intron | 45.0% |
| ! | GAGAGCATATGTGACACTGA+GGG | + | chr1.1:17430523-17430542 | MS.gene026525:intron | 45.0% |
| ! | GTATGCACTGGTGGTTTCTA+TGG | - | chr1.1:17430992-17431011 | None:intergenic | 45.0% |
| ! | TCATTCCTTTGGTGGATGGT+GGG | + | chr1.1:17429792-17429811 | MS.gene026525:CDS | 45.0% |
| ! | TGTCTTCCAATCGCCACTTT+GGG | - | chr1.1:17428738-17428757 | None:intergenic | 45.0% |
| ! | TTCATTCCTTTGGTGGATGG+TGG | + | chr1.1:17429791-17429810 | MS.gene026525:CDS | 45.0% |
| ! | TTGAGTGCTATTACGGCTAG+TGG | + | chr1.1:17428993-17429012 | MS.gene026525:intron | 45.0% |
| !! | CAGGCTGGCTGTTATCTTTT+TGG | + | chr1.1:17430666-17430685 | MS.gene026525:intron | 45.0% |
| AAAAGCCCACCATCCACCAA+AGG | - | chr1.1:17429800-17429819 | None:intergenic | 50.0% | |
| AAAAGTGGGCAGAAGAGTGG+AGG | + | chr1.1:17428705-17428724 | MS.gene026525:intron | 50.0% | |
| AACAGGACTGTGGCACACTT+TGG | + | chr1.1:17429561-17429580 | MS.gene026525:intron | 50.0% | |
| AACCCTTAGAATTCCCCCTC+TGG | + | chr1.1:17428902-17428921 | MS.gene026525:intron | 50.0% | |
| AACCGCATCTGTATGGTCCT+TGG | + | chr1.1:17430413-17430432 | MS.gene026525:intron | 50.0% | |
| AAGAAGCCCAAAGTGGCGAT+TGG | + | chr1.1:17428729-17428748 | MS.gene026525:intron | 50.0% | |
| AAGATGCTCCACGCTTGTAC+TGG | + | chr1.1:17429853-17429872 | MS.gene026525:CDS | 50.0% | |
| AGGTAGAGGGAGACTAGAGA+GGG | + | chr1.1:17428655-17428674 | MS.gene026525:intron | 50.0% | |
| AGTTGCCATGTATGCACTGG+TGG | - | chr1.1:17431001-17431020 | None:intergenic | 50.0% | |
| CACTCAAAGCACGTGACAAG+AGG | - | chr1.1:17428980-17428999 | None:intergenic | 50.0% | |
| CATGGCGTTCGTTGTGGTAT+CGG | + | chr1.1:17427958-17427977 | MS.gene026525:CDS | 50.0% | |
| CATGTTCGGATGCTCGTCAA+CGG | - | chr1.1:17428002-17428021 | None:intergenic | 50.0% | |
| CGCTCACATCATGAAGGCAA+CGG | + | chr1.1:17427773-17427792 | MS.gene026525:CDS | 50.0% | |
| CGGCAGAGCTTCTCAATGAT+AGG | - | chr1.1:17429350-17429369 | None:intergenic | 50.0% | |
| CGTTGCCTTCATGATGTGAG+CGG | - | chr1.1:17427775-17427794 | None:intergenic | 50.0% | |
| CTCCAAGGACCATACAGATG+CGG | - | chr1.1:17430418-17430437 | None:intergenic | 50.0% | |
| CTGCGTGTGACTACTGTGTA+TGG | + | chr1.1:17428845-17428864 | MS.gene026525:intron | 50.0% | |
| CTGGGGTTTCATTCCTTTGG+TGG | + | chr1.1:17429784-17429803 | MS.gene026525:CDS | 50.0% | |
| CTTCTCCGCTCACATCATGA+AGG | + | chr1.1:17427767-17427786 | MS.gene026525:CDS | 50.0% | |
| GAAAAGTCGCTCAGCAAGCT+TGG | + | chr1.1:17428771-17428790 | MS.gene026525:intron | 50.0% | |
| GATGGTTGCAGGGAAGAGTA+TGG | - | chr1.1:17431799-17431818 | None:intergenic | 50.0% | |
| GGAAATCATACCGCATCCTC+AGG | - | chr1.1:17431039-17431058 | None:intergenic | 50.0% | |
| GGGCTATCCACGACTATCAT+CGG | + | chr1.1:17429449-17429468 | MS.gene026525:intron | 50.0% | |
| GTGAGGAATGGCACTATCAG+TGG | - | chr1.1:17429523-17429542 | None:intergenic | 50.0% | |
| GTTCCAGAGGGGGAATTCTA+AGG | - | chr1.1:17428908-17428927 | None:intergenic | 50.0% | |
| TAGGTAGAGGGAGACTAGAG+AGG | + | chr1.1:17428654-17428673 | MS.gene026525:intron | 50.0% | |
| TCACATCATGAAGGCAACGG+CGG | + | chr1.1:17427776-17427795 | MS.gene026525:CDS | 50.0% | |
| TCATGATGTGAGCGGAGAAG+CGG | - | chr1.1:17427767-17427786 | None:intergenic | 50.0% | |
| TGGAGGAAAGAAGCCCAAAG+TGG | + | chr1.1:17428722-17428741 | MS.gene026525:intron | 50.0% | |
| TGGCTTCGAGTATCCCCAAT+CGG | - | chr1.1:17427912-17427931 | None:intergenic | 50.0% | |
| ! | AGTGCTATTACGGCTAGTGG+TGG | + | chr1.1:17428996-17429015 | MS.gene026525:intron | 50.0% |
| ! | GCTATTTGTACCGGTGCTGA+AGG | + | chr1.1:17429979-17429998 | MS.gene026525:intron | 50.0% |
| ! | GGAGAGCATATGTGACACTG+AGG | + | chr1.1:17430522-17430541 | MS.gene026525:intron | 50.0% |
| ! | GGAGGCTGGTTCACTAATGT+AGG | + | chr1.1:17428796-17428815 | MS.gene026525:intron | 50.0% |
| ! | GGCTTTTACTGGGTTGTCTC+TGG | + | chr1.1:17429813-17429832 | MS.gene026525:CDS | 50.0% |
| ! | TAGTGGTGGAGCTGGATCAA+TGG | + | chr1.1:17430963-17430982 | MS.gene026525:CDS | 50.0% |
| !! | GTCTTGGTATCGATTCCAGC+AGG | - | chr1.1:17429216-17429235 | None:intergenic | 50.0% |
| !! | TTTTCAGGCACCTTCAGCAC+CGG | - | chr1.1:17429992-17430011 | None:intergenic | 50.0% |
| !!! | GTGGATGGTGGGCTTTTACT+GGG | + | chr1.1:17429803-17429822 | MS.gene026525:CDS | 50.0% |
| ACGTGAACTCGTCTCAGTCC+AGG | + | chr1.1:17428188-17428207 | MS.gene026525:CDS | 55.0% | |
| ACTTCCCTCGCTCAGCTTCT+CGG | + | chr1.1:17427812-17427831 | MS.gene026525:CDS | 55.0% | |
| AGGCGTGCAGCTGTAATCAC+CGG | - | chr1.1:17429370-17429389 | None:intergenic | 55.0% | |
| AGTATCACCGCCGTAATCGG+AGG | + | chr1.1:17428089-17428108 | MS.gene026525:CDS | 55.0% | |
| AGTCGCTCAGCAAGCTTGGT+CGG | + | chr1.1:17428775-17428794 | MS.gene026525:intron | 55.0% | |
| ATGTCCGCAGAACAGGACTG+TGG | + | chr1.1:17429551-17429570 | MS.gene026525:intron | 55.0% | |
| CAAACGCGGATCGGCATGTT+CGG | - | chr1.1:17428016-17428035 | None:intergenic | 55.0% | |
| CGTAACCGACGATCCAAACG+CGG | - | chr1.1:17428030-17428049 | None:intergenic | 55.0% | |
| GAAGCTGAGCGAGGGAAGTA+CGG | - | chr1.1:17427811-17427830 | None:intergenic | 55.0% | |
| GCTCGACATGTCGTGGAACA+TGG | + | chr1.1:17427940-17427959 | MS.gene026525:CDS | 55.0% | |
| GTATCACCGCCGTAATCGGA+GGG | + | chr1.1:17428090-17428109 | MS.gene026525:CDS | 55.0% | |
| GTGGAACATGGCGTTCGTTG+TGG | + | chr1.1:17427952-17427971 | MS.gene026525:CDS | 55.0% | |
| TCCGCGAATCCCTCCGATTA+CGG | - | chr1.1:17428102-17428121 | None:intergenic | 55.0% | |
| TCTCTATGCTGTTGCGGGAC+AGG | + | chr1.1:17430780-17430799 | MS.gene026525:CDS | 55.0% | |
| TGTGCCACAGTCCTGTTCTG+CGG | - | chr1.1:17429558-17429577 | None:intergenic | 55.0% | |
| ! | AGCGTGGAGCATCTTGCAGA+AGG | - | chr1.1:17429848-17429867 | None:intergenic | 55.0% |
| ! | CTGGTTGGGTTGTCACTCCA+AGG | - | chr1.1:17430433-17430452 | None:intergenic | 55.0% |
| ! | GAGAAGGATAGTGGTGGAGC+TGG | + | chr1.1:17430955-17430974 | MS.gene026525:CDS | 55.0% |
| ! | TCGAAGAACGTCGTGCCGAT+TGG | + | chr1.1:17427894-17427913 | MS.gene026525:CDS | 55.0% |
| !! | CGAAGAACGTCGTGCCGATT+GGG | + | chr1.1:17427895-17427914 | MS.gene026525:CDS | 55.0% |
| !! | GAAGAACGTCGTGCCGATTG+GGG | + | chr1.1:17427896-17427915 | MS.gene026525:CDS | 55.0% |
| !! | GGTATCGGCAGTGATGCTTG+CGG | + | chr1.1:17427973-17427992 | MS.gene026525:CDS | 55.0% |
| !!! | GGTGGATGGTGGGCTTTTAC+TGG | + | chr1.1:17429802-17429821 | MS.gene026525:CDS | 55.0% |
| ACGAAGAGGACCATCCGTCC+TGG | + | chr1.1:17427847-17427866 | MS.gene026525:CDS | 60.0% | |
| ATCCGTCCTGGTCCGCGAAA+CGG | + | chr1.1:17427859-17427878 | MS.gene026525:CDS | 60.0% | |
| CATCATGAAGGCAACGGCGG+TGG | + | chr1.1:17427779-17427798 | MS.gene026525:CDS | 60.0% | |
| CCGACGATCCAAACGCGGAT+CGG | - | chr1.1:17428025-17428044 | None:intergenic | 60.0% | |
| CCGATCCGCGTTTGGATCGT+CGG | + | chr1.1:17428022-17428041 | MS.gene026525:CDS | 60.0% | |
| CGAACATGCCGATCCGCGTT+TGG | + | chr1.1:17428014-17428033 | MS.gene026525:CDS | 60.0% | |
| GACATGTCGAGCGCTACGAC+TGG | - | chr1.1:17427932-17427951 | None:intergenic | 60.0% | |
| GACGGATGGTCCTCTTCGTC+CGG | - | chr1.1:17427846-17427865 | None:intergenic | 60.0% | |
| GAGCGGAGAAGCGGTGTTTG+TGG | - | chr1.1:17427758-17427777 | None:intergenic | 60.0% | |
| GCCGTAATCGGAGGGATTCG+CGG | + | chr1.1:17428098-17428117 | MS.gene026525:CDS | 60.0% | |
| GCGAATCCCTCCGATTACGG+CGG | - | chr1.1:17428099-17428118 | None:intergenic | 60.0% | |
| GTAATCGGAGGGATTCGCGG+AGG | + | chr1.1:17428101-17428120 | MS.gene026525:CDS | 60.0% | |
| TCGTAGCGCTCGACATGTCG+TGG | + | chr1.1:17427933-17427952 | MS.gene026525:CDS | 60.0% | |
| ATCGGAGGGATTCGCGGAGG+AGG | + | chr1.1:17428104-17428123 | MS.gene026525:CDS | 65.0% | |
| CAGCAAGCTTGGTCGGAGGC+TGG | + | chr1.1:17428782-17428801 | MS.gene026525:intron | 65.0% | |
| CATGAAGGCAACGGCGGTGG+CGG | + | chr1.1:17427782-17427801 | MS.gene026525:CDS | 65.0% | |
| CGCTCAGCAAGCTTGGTCGG+AGG | + | chr1.1:17428778-17428797 | MS.gene026525:intron | 65.0% | |
| GCGTCCGAGAAGCTGAGCGA+GGG | - | chr1.1:17427819-17427838 | None:intergenic | 65.0% | |
| GGATGGTCCTCTTCGTCCGG+TGG | - | chr1.1:17427843-17427862 | None:intergenic | 65.0% | |
| GGATTCGCGGAGGAGGCAGA+GGG | + | chr1.1:17428111-17428130 | MS.gene026525:CDS | 65.0% | |
| GGGGCAGTCTTTCCTCCACC+AGG | - | chr1.1:17429329-17429348 | None:intergenic | 65.0% | |
| GTTTCGCGGACCAGGACGGA+TGG | - | chr1.1:17427860-17427879 | None:intergenic | 65.0% | |
| CAGCTTCTCGGACGCGCCAC+CGG | + | chr1.1:17427824-17427843 | MS.gene026525:CDS | 70.0% | |
| CGCCGTTTCGCGGACCAGGA+CGG | - | chr1.1:17427864-17427883 | None:intergenic | 70.0% | |
| CGCGTCCGAGAAGCTGAGCG+AGG | - | chr1.1:17427820-17427839 | None:intergenic | 70.0% | |
| CGTCCTGGTCCGCGAAACGG+CGG | + | chr1.1:17427862-17427881 | MS.gene026525:CDS | 70.0% | |
| GGGATTCGCGGAGGAGGCAG+AGG | + | chr1.1:17428110-17428129 | MS.gene026525:CDS | 70.0% | |
| GTTCACGCGCCGCCGTTTCG+CGG | - | chr1.1:17427874-17427893 | None:intergenic | 70.0% | |
| GGACGCGCCACCGGACGAAG+AGG | + | chr1.1:17427833-17427852 | MS.gene026525:CDS | 75.0% | |
| ! | GCGCCGCCGTTTCGCGGACC+AGG | - | chr1.1:17427868-17427887 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 17427728 | 17431913 | 17427728 | ID=MS.gene026525 |
| chr1.1 | mRNA | 17427728 | 17431913 | 17427728 | ID=MS.gene026525.t1;Parent=MS.gene026525 |
| chr1.1 | exon | 17427728 | 17428209 | 17427728 | ID=MS.gene026525.t1.exon1;Parent=MS.gene026525.t1 |
| chr1.1 | CDS | 17427728 | 17428209 | 17427728 | ID=cds.MS.gene026525.t1;Parent=MS.gene026525.t1 |
| chr1.1 | exon | 17429755 | 17429874 | 17429755 | ID=MS.gene026525.t1.exon2;Parent=MS.gene026525.t1 |
| chr1.1 | CDS | 17429755 | 17429874 | 17429755 | ID=cds.MS.gene026525.t1;Parent=MS.gene026525.t1 |
| chr1.1 | exon | 17430669 | 17430801 | 17430669 | ID=MS.gene026525.t1.exon3;Parent=MS.gene026525.t1 |
| chr1.1 | CDS | 17430669 | 17430801 | 17430669 | ID=cds.MS.gene026525.t1;Parent=MS.gene026525.t1 |
| chr1.1 | exon | 17430889 | 17431047 | 17430889 | ID=MS.gene026525.t1.exon4;Parent=MS.gene026525.t1 |
| chr1.1 | CDS | 17430889 | 17431047 | 17430889 | ID=cds.MS.gene026525.t1;Parent=MS.gene026525.t1 |
| chr1.1 | exon | 17431752 | 17431913 | 17431752 | ID=MS.gene026525.t1.exon5;Parent=MS.gene026525.t1 |
| chr1.1 | CDS | 17431752 | 17431913 | 17431752 | ID=cds.MS.gene026525.t1;Parent=MS.gene026525.t1 |
| Gene Sequence |
| Protein sequence |
