Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070293.t1 | RHN67442.1 | 98.1 | 319 | 6 | 0 | 1 | 319 | 15 | 333 | 5.50E-182 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070293.t1 | Q93Z92 | 31.6 | 266 | 136 | 8 | 81 | 314 | 128 | 379 | 1.1e-26 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070293.t1 | A0A396IPD2 | 98.1 | 319 | 6 | 0 | 1 | 319 | 15 | 333 | 4.0e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070293 | MS.gene83063 | PPI |
| MS.gene070293 | MS.gene042467 | PPI |
| MS.gene08162 | MS.gene070293 | PPI |
| MS.gene026525 | MS.gene070293 | PPI |
| MS.gene070293 | MS.gene25181 | PPI |
| MS.gene98977 | MS.gene070293 | PPI |
| MS.gene070293 | MS.gene41778 | PPI |
| MS.gene070293 | MS.gene067859 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070293.t1 | MTR_5g096410 | 78.146 | 302 | 65 | 1 | 19 | 319 | 39 | 340 | 4.64e-161 | 452 |
| MS.gene070293.t1 | MTR_5g096410 | 77.152 | 302 | 65 | 2 | 19 | 319 | 39 | 337 | 2.31e-156 | 441 |
| MS.gene070293.t1 | MTR_5g096410 | 75.166 | 302 | 62 | 2 | 19 | 319 | 39 | 328 | 4.72e-150 | 424 |
| MS.gene070293.t1 | MTR_1g011380 | 34.884 | 301 | 153 | 7 | 55 | 314 | 84 | 382 | 2.86e-54 | 182 |
| MS.gene070293.t1 | MTR_3g107995 | 35.430 | 302 | 153 | 7 | 56 | 317 | 62 | 361 | 5.33e-54 | 181 |
| MS.gene070293.t1 | MTR_8g105330 | 28.723 | 282 | 170 | 8 | 60 | 314 | 49 | 326 | 1.06e-35 | 132 |
| MS.gene070293.t1 | MTR_4g102870 | 28.873 | 284 | 158 | 6 | 74 | 319 | 85 | 362 | 8.17e-33 | 125 |
| MS.gene070293.t1 | MTR_7g088500 | 30.435 | 253 | 134 | 9 | 86 | 319 | 63 | 292 | 1.13e-31 | 120 |
| MS.gene070293.t1 | MTR_1g032440 | 28.519 | 270 | 165 | 6 | 74 | 319 | 80 | 345 | 2.01e-31 | 120 |
| MS.gene070293.t1 | MTR_5g010720 | 30.545 | 275 | 147 | 8 | 80 | 314 | 103 | 373 | 1.93e-29 | 116 |
| MS.gene070293.t1 | MTR_7g076010 | 26.996 | 263 | 147 | 7 | 86 | 314 | 102 | 353 | 1.65e-26 | 107 |
| MS.gene070293.t1 | MTR_7g088560 | 32.515 | 163 | 87 | 6 | 178 | 319 | 23 | 183 | 5.46e-18 | 80.9 |
| MS.gene070293.t1 | MTR_7g088570 | 35.659 | 129 | 66 | 4 | 205 | 318 | 162 | 288 | 1.12e-15 | 76.6 |
| MS.gene070293.t1 | MTR_1g032440 | 25.654 | 191 | 127 | 4 | 74 | 253 | 80 | 266 | 6.96e-13 | 68.6 |
| MS.gene070293.t1 | MTR_5g082940 | 40.217 | 92 | 42 | 3 | 228 | 318 | 70 | 149 | 3.79e-12 | 64.3 |
| MS.gene070293.t1 | MTR_3g071300 | 32.203 | 118 | 77 | 2 | 204 | 318 | 35 | 152 | 6.68e-12 | 63.5 |
| MS.gene070293.t1 | MTR_4g116460 | 42.424 | 66 | 30 | 2 | 250 | 314 | 468 | 526 | 9.22e-12 | 66.2 |
| MS.gene070293.t1 | MTR_4g116460 | 42.424 | 66 | 30 | 2 | 250 | 314 | 425 | 483 | 9.33e-12 | 65.9 |
| MS.gene070293.t1 | MTR_5g022920 | 35.556 | 90 | 45 | 3 | 229 | 317 | 157 | 234 | 2.96e-11 | 62.8 |
| MS.gene070293.t1 | MTR_3g110190 | 30.282 | 142 | 74 | 5 | 182 | 314 | 9 | 134 | 5.29e-11 | 63.2 |
| MS.gene070293.t1 | MTR_1g114240 | 31.915 | 94 | 51 | 1 | 220 | 313 | 248 | 328 | 9.50e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070293.t1 | AT5G55970 | 69.000 | 300 | 88 | 2 | 20 | 319 | 49 | 343 | 1.67e-149 | 424 |
| MS.gene070293.t1 | AT5G55970 | 69.000 | 300 | 88 | 2 | 20 | 319 | 49 | 343 | 1.67e-149 | 424 |
| MS.gene070293.t1 | AT4G26580 | 68.687 | 297 | 84 | 3 | 21 | 317 | 46 | 333 | 2.11e-144 | 410 |
| MS.gene070293.t1 | AT4G26580 | 68.687 | 297 | 84 | 3 | 21 | 317 | 46 | 333 | 2.11e-144 | 410 |
| MS.gene070293.t1 | AT5G55970 | 71.179 | 229 | 64 | 1 | 20 | 248 | 49 | 275 | 9.87e-116 | 337 |
| MS.gene070293.t1 | AT1G80400 | 31.429 | 350 | 187 | 9 | 6 | 314 | 59 | 396 | 1.01e-56 | 189 |
| MS.gene070293.t1 | AT4G32600 | 35.333 | 300 | 150 | 7 | 57 | 314 | 107 | 404 | 1.37e-55 | 187 |
| MS.gene070293.t1 | AT4G32600 | 35.333 | 300 | 150 | 7 | 57 | 314 | 107 | 404 | 1.37e-55 | 187 |
| MS.gene070293.t1 | AT3G61180 | 28.889 | 270 | 148 | 7 | 81 | 314 | 103 | 364 | 4.66e-34 | 128 |
| MS.gene070293.t1 | AT2G01735 | 28.625 | 269 | 165 | 7 | 74 | 319 | 89 | 353 | 6.13e-33 | 125 |
| MS.gene070293.t1 | AT1G68070 | 29.537 | 281 | 165 | 9 | 60 | 314 | 60 | 333 | 1.88e-32 | 123 |
| MS.gene070293.t1 | AT4G11680 | 32.824 | 262 | 140 | 8 | 80 | 314 | 127 | 379 | 2.12e-32 | 124 |
| MS.gene070293.t1 | AT1G12760 | 27.090 | 299 | 154 | 10 | 74 | 319 | 41 | 328 | 9.25e-27 | 108 |
| MS.gene070293.t1 | AT1G12760 | 27.551 | 294 | 149 | 10 | 74 | 314 | 112 | 394 | 1.02e-26 | 108 |
| MS.gene070293.t1 | AT4G11680 | 29.897 | 291 | 139 | 9 | 80 | 314 | 127 | 408 | 1.72e-26 | 108 |
| MS.gene070293.t1 | AT1G63170 | 30.249 | 281 | 136 | 10 | 84 | 314 | 96 | 366 | 4.79e-26 | 107 |
| MS.gene070293.t1 | AT3G19910 | 34.483 | 87 | 44 | 1 | 227 | 313 | 255 | 328 | 2.84e-12 | 67.0 |
| MS.gene070293.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 41 | 219 | 4.09e-12 | 66.2 |
| MS.gene070293.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 41 | 219 | 4.09e-12 | 66.2 |
| MS.gene070293.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 41 | 219 | 4.09e-12 | 66.2 |
| MS.gene070293.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 82 | 260 | 4.27e-12 | 66.6 |
| MS.gene070293.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 98 | 276 | 4.32e-12 | 66.6 |
| MS.gene070293.t1 | AT2G35910 | 58.140 | 43 | 17 | 1 | 273 | 314 | 147 | 189 | 2.41e-11 | 62.8 |
| MS.gene070293.t1 | AT5G66070 | 37.500 | 88 | 38 | 3 | 231 | 317 | 150 | 221 | 3.89e-11 | 62.4 |
| MS.gene070293.t1 | AT5G66070 | 37.500 | 88 | 38 | 3 | 231 | 317 | 150 | 221 | 3.89e-11 | 62.4 |
| MS.gene070293.t1 | AT5G66070 | 37.500 | 88 | 38 | 3 | 231 | 317 | 174 | 245 | 5.15e-11 | 62.4 |
| MS.gene070293.t1 | AT5G43420 | 34.118 | 85 | 55 | 1 | 231 | 314 | 96 | 180 | 6.89e-11 | 63.2 |
Find 59 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGTTGTTACTTTA+TGG | 0.063293 | 3.3:+48773816 | MS.gene070293:CDS |
| TTCTTCTTTGTCTTTGTATT+TGG | 0.132140 | 3.3:-48778019 | None:intergenic |
| GATCAGATCTTGGTCCATTT+TGG | 0.217801 | 3.3:-48773632 | None:intergenic |
| ATCCAAGTACTAGAATTAAA+AGG | 0.225472 | 3.3:-48773666 | None:intergenic |
| TGCTCTTGGCCTTTCTGATT+TGG | 0.226775 | 3.3:+48773872 | MS.gene070293:CDS |
| GGAAGATATCATCAAATTAA+TGG | 0.236379 | 3.3:+48773837 | MS.gene070293:CDS |
| TCTGCATCATTCTTCTTGTT+TGG | 0.260239 | 3.3:+48777148 | MS.gene070293:CDS |
| ATGCAGAGAACTTGGAGTTT+TGG | 0.284599 | 3.3:-48777132 | None:intergenic |
| TGGATAGTTGGTTATGATAT+TGG | 0.288164 | 3.3:+48773786 | MS.gene070293:CDS |
| CATCAAATTAATGGGACTAA+TGG | 0.304532 | 3.3:+48773846 | MS.gene070293:CDS |
| TGGTCCTTTGACTCACGTTT+TGG | 0.318994 | 3.3:+48777093 | MS.gene070293:CDS |
| AGAGTGTTTCATTACCAAAA+TGG | 0.321656 | 3.3:+48773618 | MS.gene070293:CDS |
| CCTATGAGGGTTTGGATAGT+TGG | 0.350667 | 3.3:+48773774 | MS.gene070293:CDS |
| CTGTTTGGCCTATGAGGGTT+TGG | 0.381036 | 3.3:+48773766 | MS.gene070293:CDS |
| TTGTACCATGCAGTGTATAC+AGG | 0.398135 | 3.3:+48776995 | MS.gene070293:intron |
| GAAGATATCATCAAATTAAT+GGG | 0.398923 | 3.3:+48773838 | MS.gene070293:CDS |
| CAAAGAATGAGAAACCTGTT+TGG | 0.407405 | 3.3:+48773751 | MS.gene070293:CDS |
| ATCATTGTTAACATCTACTT+TGG | 0.411799 | 3.3:-48777340 | None:intergenic |
| AACAAGCACAACATTTACTT+TGG | 0.415674 | 3.3:+48773722 | MS.gene070293:CDS |
| CAAACCCTCATAGGCCAAAC+AGG | 0.416165 | 3.3:-48773765 | None:intergenic |
| CCAACTATCCAAACCCTCAT+AGG | 0.421618 | 3.3:-48773774 | None:intergenic |
| TATGTTACTTACCGGCTCTT+CGG | 0.429112 | 3.3:-48777388 | None:intergenic |
| GAAGAATGATGCAGAGAACT+TGG | 0.430799 | 3.3:-48777140 | None:intergenic |
| TGATCTTGAGATAAGGTAGT+TGG | 0.435282 | 3.3:-48773531 | None:intergenic |
| AACATTGGTTCCTCTTCTAA+AGG | 0.446577 | 3.3:+48777261 | MS.gene070293:CDS |
| AAATCTCACAACTTCCATCT+TGG | 0.447583 | 3.3:+48777298 | MS.gene070293:CDS |
| TAAGGTAGTTGGTTGAGGTA+TGG | 0.448935 | 3.3:-48773520 | None:intergenic |
| AGAAACCTGTTTGGCCTATG+AGG | 0.451178 | 3.3:+48773760 | MS.gene070293:CDS |
| AAACAAACAATGAAGAAAAC+AGG | 0.451322 | 3.3:+48773901 | MS.gene070293:CDS |
| ATCTAAAATGTGTTGATCAA+TGG | 0.459364 | 3.3:+48778073 | MS.gene070293:CDS |
| AAGATTGATCGCCGAAGAGC+CGG | 0.485021 | 3.3:+48777377 | MS.gene070293:CDS |
| ACAAAGACAAAGAAGAAGTT+AGG | 0.485178 | 3.3:+48778025 | MS.gene070293:CDS |
| TCCAAGTACTAGAATTAAAA+GGG | 0.487171 | 3.3:-48773665 | None:intergenic |
| TGAGATAAGGTAGTTGGTTG+AGG | 0.490004 | 3.3:-48773525 | None:intergenic |
| AATGGACCAAGATCTGATCT+TGG | 0.496984 | 3.3:+48773636 | MS.gene070293:CDS |
| CTTTGCAATATGGTTTGTGA+TGG | 0.515501 | 3.3:+48777062 | MS.gene070293:CDS |
| CTTGGTTACAACATGAACAT+TGG | 0.516268 | 3.3:+48777246 | MS.gene070293:CDS |
| TTTGTTGTTCCAAATCAGAA+AGG | 0.520171 | 3.3:-48773881 | None:intergenic |
| GGGACTAATGGAGATGCTCT+TGG | 0.520597 | 3.3:+48773858 | MS.gene070293:CDS |
| TCCATCTTGGAGATTTAAAG+TGG | 0.525434 | 3.3:+48777311 | MS.gene070293:CDS |
| TCTTGATCTTGATATTCTCA+TGG | 0.531696 | 3.3:-48773577 | None:intergenic |
| CCACTCATTAGCACACTCCT+TGG | 0.535217 | 3.3:+48777228 | MS.gene070293:CDS |
| TTTGTAAACAAGGACTTCAA+AGG | 0.538107 | 3.3:+48778121 | MS.gene070293:CDS |
| GCCATTCTAGTAAAATATGA+AGG | 0.541273 | 3.3:-48773555 | None:intergenic |
| GGTTTGTGATGGGAAATGTT+TGG | 0.542130 | 3.3:+48777073 | MS.gene070293:CDS |
| GCCACTTTAAATCTCCAAGA+TGG | 0.543549 | 3.3:-48777312 | None:intergenic |
| GAAACCTGTTTGGCCTATGA+GGG | 0.546725 | 3.3:+48773761 | MS.gene070293:CDS |
| TTAGAACCAAGATCAGATCT+TGG | 0.550843 | 3.3:-48773642 | None:intergenic |
| TGTTCCAAAACGTGAGTCAA+AGG | 0.552816 | 3.3:-48777097 | None:intergenic |
| TGCTGCCCTCTTTGTAAACA+AGG | 0.563075 | 3.3:+48778111 | MS.gene070293:CDS |
| ACAGGAATGTTGCATATGCT+TGG | 0.563922 | 3.3:+48777996 | MS.gene070293:intron |
| GAAGTCCTTGTTTACAAAGA+GGG | 0.565092 | 3.3:-48778116 | None:intergenic |
| ATCAGATGCACCTTTAGAAG+AGG | 0.578523 | 3.3:-48777271 | None:intergenic |
| TGAAGTCCTTGTTTACAAAG+AGG | 0.583258 | 3.3:-48778117 | None:intergenic |
| TGAAGGTTGATCTTGAGATA+AGG | 0.589208 | 3.3:-48773538 | None:intergenic |
| TTTGCAATATGGTTTGTGAT+GGG | 0.603007 | 3.3:+48777063 | MS.gene070293:CDS |
| AGATGGAACATATGGGAACA+AGG | 0.606545 | 3.3:-48778054 | None:intergenic |
| CAATGTTCATGTTGTAACCA+AGG | 0.621288 | 3.3:-48777245 | None:intergenic |
| CCAAGGAGTGTGCTAATGAG+TGG | 0.648597 | 3.3:-48777228 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATGTCAATT+AGG | - | chr3.3:48774352-48774371 | None:intergenic | 10.0% |
| !! | TAATTTACGTAATTTATTAA+CGG | + | chr3.3:48775883-48775902 | MS.gene070293:intron | 10.0% |
| !!! | AAAAATATTTGGTTTTTTAA+CGG | + | chr3.3:48774684-48774703 | MS.gene070293:intron | 10.0% |
| !!! | AATAATTTTTTTTATTGTAG+GGG | + | chr3.3:48776254-48776273 | MS.gene070293:intron | 10.0% |
| !!! | AATATAATTTTTTTTATTGG+TGG | + | chr3.3:48774421-48774440 | MS.gene070293:intron | 10.0% |
| !!! | ATATAATTTTTTTTATTGGT+GGG | + | chr3.3:48774422-48774441 | MS.gene070293:intron | 10.0% |
| !!! | GGAAATATAATTTTTTTTAT+TGG | + | chr3.3:48774418-48774437 | MS.gene070293:intron | 10.0% |
| !! | AAAAAAAAATCAAAAATCCA+TGG | - | chr3.3:48775394-48775413 | None:intergenic | 15.0% |
| !! | AAAAAAAATCAAAAATCCAT+GGG | - | chr3.3:48775393-48775412 | None:intergenic | 15.0% |
| !! | AATACACTTTCAAAAATATT+TGG | + | chr3.3:48774673-48774692 | MS.gene070293:intron | 15.0% |
| !! | AATTTACGTAATTTATTAAC+GGG | + | chr3.3:48775884-48775903 | MS.gene070293:intron | 15.0% |
| !! | ATTGGAATAAAAATAAAAAG+TGG | - | chr3.3:48775074-48775093 | None:intergenic | 15.0% |
| !! | TTGGAATAAAAATAAAAAGT+GGG | - | chr3.3:48775073-48775092 | None:intergenic | 15.0% |
| !!! | AGTTTTTATGTAATTCAATT+AGG | - | chr3.3:48776073-48776092 | None:intergenic | 15.0% |
| !!! | ATATTTTTATGAAGTATTGT+TGG | - | chr3.3:48774643-48774662 | None:intergenic | 15.0% |
| !!! | GTTTATGATTTTAGAATTTA+GGG | - | chr3.3:48775681-48775700 | None:intergenic | 15.0% |
| !!! | GTTTTTATGTAATTCAATTA+GGG | - | chr3.3:48776072-48776091 | None:intergenic | 15.0% |
| !!! | TATAATTTTTTTTATTGGTG+GGG | + | chr3.3:48774423-48774442 | MS.gene070293:intron | 15.0% |
| !!! | TGTTTATGATTTTAGAATTT+AGG | - | chr3.3:48775682-48775701 | None:intergenic | 15.0% |
| !!! | TTAAAGTAGAAATTTTATCT+GGG | + | chr3.3:48776472-48776491 | MS.gene070293:intron | 15.0% |
| !!! | TTTAAAGTAGAAATTTTATC+TGG | + | chr3.3:48776471-48776490 | MS.gene070293:intron | 15.0% |
| !!! | TTTTTATGTAATTCAATTAG+GGG | - | chr3.3:48776071-48776090 | None:intergenic | 15.0% |
| !! | AAAAGTTGTACAATAAACTA+GGG | + | chr3.3:48775830-48775849 | MS.gene070293:intron | 20.0% |
| !! | ATAAAAAAACCACTTAATAG+CGG | - | chr3.3:48777902-48777921 | None:intergenic | 20.0% |
| !! | ATAAACAAATAATCATGCTA+AGG | + | chr3.3:48775695-48775714 | MS.gene070293:intron | 20.0% |
| !! | ATCTACACATACATATTATT+AGG | - | chr3.3:48777947-48777966 | None:intergenic | 20.0% |
| !! | CTATGATGACTTTATATTTA+AGG | - | chr3.3:48774500-48774519 | None:intergenic | 20.0% |
| !! | GAAGATATCATCAAATTAAT+GGG | + | chr3.3:48773838-48773857 | MS.gene070293:CDS | 20.0% |
| !! | GATACCATTAATTAATTGTT+AGG | + | chr3.3:48774075-48774094 | MS.gene070293:intron | 20.0% |
| !! | TGTAAGAATCATATCTATTA+TGG | - | chr3.3:48775566-48775585 | None:intergenic | 20.0% |
| !!! | AATGGATTATGAAATTTGAA+TGG | - | chr3.3:48775488-48775507 | None:intergenic | 20.0% |
| !!! | ATTTTAGAGGGTATTTTATT+TGG | - | chr3.3:48775651-48775670 | None:intergenic | 20.0% |
| !!! | CTTAATTTGTTGTTACTTTA+TGG | + | chr3.3:48773816-48773835 | MS.gene070293:CDS | 20.0% |
| !!! | TAAATAACTTTTACCTTATG+CGG | + | chr3.3:48777830-48777849 | MS.gene070293:intron | 20.0% |
| !!! | TAAGAATCTTGATTTTTGAT+TGG | - | chr3.3:48775518-48775537 | None:intergenic | 20.0% |
| !!! | TAAGATGTTTAAAATGTGAT+CGG | - | chr3.3:48777511-48777530 | None:intergenic | 20.0% |
| !!! | TATTTTTGAAAGTGTATTTG+TGG | - | chr3.3:48774671-48774690 | None:intergenic | 20.0% |
| ! | AAACAAACAATGAAGAAAAC+AGG | + | chr3.3:48773901-48773920 | MS.gene070293:CDS | 25.0% |
| ! | AAACTTACAACAATTTCACA+AGG | - | chr3.3:48775102-48775121 | None:intergenic | 25.0% |
| ! | AACTTACAACAATTTCACAA+GGG | - | chr3.3:48775101-48775120 | None:intergenic | 25.0% |
| ! | AACTTCTTATCATTTCCTTT+AGG | - | chr3.3:48776453-48776472 | None:intergenic | 25.0% |
| ! | ACTTCTTATCATTTCCTTTA+GGG | - | chr3.3:48776452-48776471 | None:intergenic | 25.0% |
| ! | ATCATTGTTAACATCTACTT+TGG | - | chr3.3:48777343-48777362 | None:intergenic | 25.0% |
| ! | ATCCAAGTACTAGAATTAAA+AGG | - | chr3.3:48773669-48773688 | None:intergenic | 25.0% |
| ! | ATTGAATTCATTGATGTCAA+TGG | + | chr3.3:48775226-48775245 | MS.gene070293:intron | 25.0% |
| ! | GAAAAGTTGTACAATAAACT+AGG | + | chr3.3:48775829-48775848 | MS.gene070293:intron | 25.0% |
| ! | GAAGAAAAAAAAAGAGATGA+AGG | + | chr3.3:48775725-48775744 | MS.gene070293:intron | 25.0% |
| ! | GGAAGATATCATCAAATTAA+TGG | + | chr3.3:48773837-48773856 | MS.gene070293:CDS | 25.0% |
| ! | GTGAAGTTAATTAAATAAGC+CGG | + | chr3.3:48777661-48777680 | MS.gene070293:intron | 25.0% |
| ! | TAAAAAAACCACTTAATAGC+GGG | - | chr3.3:48777901-48777920 | None:intergenic | 25.0% |
| ! | TCCAAGTACTAGAATTAAAA+GGG | - | chr3.3:48773668-48773687 | None:intergenic | 25.0% |
| ! | TCTATCTTGAAAGTTCTATT+TGG | - | chr3.3:48774101-48774120 | None:intergenic | 25.0% |
| ! | TGAATGGAATATGTTATGTA+TGG | - | chr3.3:48775472-48775491 | None:intergenic | 25.0% |
| ! | TTACTTACTCACTGTATATT+AGG | - | chr3.3:48775178-48775197 | None:intergenic | 25.0% |
| ! | TTCTTCTTTGTCTTTGTATT+TGG | - | chr3.3:48778022-48778041 | None:intergenic | 25.0% |
| ! | TTGAATTCATTGATGTCAAT+GGG | + | chr3.3:48775227-48775246 | MS.gene070293:intron | 25.0% |
| ! | TTGGCCTAACAATTAATTAA+TGG | - | chr3.3:48774082-48774101 | None:intergenic | 25.0% |
| !! | AAATTTGCTTCTATTTCCTA+AGG | + | chr3.3:48776675-48776694 | MS.gene070293:intron | 25.0% |
| !! | AACTTGAGTATTTTCCAATA+GGG | + | chr3.3:48776827-48776846 | MS.gene070293:intron | 25.0% |
| !! | ACATTTTAGATGGAACATAT+GGG | - | chr3.3:48778064-48778083 | None:intergenic | 25.0% |
| !! | ACCTTCATATTTTACTAGAA+TGG | + | chr3.3:48773554-48773573 | MS.gene070293:CDS | 25.0% |
| !! | ATAATAGCTATGTTACTTAC+CGG | - | chr3.3:48777399-48777418 | None:intergenic | 25.0% |
| !! | ATCATAGTTTCATGATTTTC+CGG | + | chr3.3:48774513-48774532 | MS.gene070293:intron | 25.0% |
| !! | ATCTAAAATGTGTTGATCAA+TGG | + | chr3.3:48778073-48778092 | MS.gene070293:CDS | 25.0% |
| !! | ATTGATCAACACATTTTAGA+TGG | - | chr3.3:48778074-48778093 | None:intergenic | 25.0% |
| !! | TTTTACTTCAAGAATTTGCA+TGG | - | chr3.3:48775593-48775612 | None:intergenic | 25.0% |
| !!! | AAATACCCTCTAAAATTAGA+AGG | + | chr3.3:48775655-48775674 | MS.gene070293:intron | 25.0% |
| !!! | AATACCCTTTTAAAAATACG+AGG | + | chr3.3:48776647-48776666 | MS.gene070293:intron | 25.0% |
| !!! | CTGTTAGGTTTTATTCTATT+AGG | + | chr3.3:48776717-48776736 | MS.gene070293:intron | 25.0% |
| !!! | CTTGATTTTTGATTGGATTA+TGG | - | chr3.3:48775511-48775530 | None:intergenic | 25.0% |
| !!! | CTTTAGAAGTTGAATTTTGT+AGG | - | chr3.3:48775447-48775466 | None:intergenic | 25.0% |
| !!! | TTGGAGATTTCTATGTTTTT+TGG | - | chr3.3:48775632-48775651 | None:intergenic | 25.0% |
| !!! | TTTTTATGAAGTATTGTTGG+TGG | - | chr3.3:48774640-48774659 | None:intergenic | 25.0% |
| !!! | TTTTTGATTGGATTATGGAA+TGG | - | chr3.3:48775506-48775525 | None:intergenic | 25.0% |
| AAACACCTTGTATGTGATTA+AGG | + | chr3.3:48777729-48777748 | MS.gene070293:intron | 30.0% | |
| AACAAGCACAACATTTACTT+TGG | + | chr3.3:48773722-48773741 | MS.gene070293:CDS | 30.0% | |
| AACACCTTGTATGTGATTAA+GGG | + | chr3.3:48777730-48777749 | MS.gene070293:intron | 30.0% | |
| ACAAAGACAAAGAAGAAGTT+AGG | + | chr3.3:48778025-48778044 | MS.gene070293:CDS | 30.0% | |
| ACATTTATCTTTACCGCATA+AGG | - | chr3.3:48777846-48777865 | None:intergenic | 30.0% | |
| AGAGAGAAATATGTGAGAAA+TGG | - | chr3.3:48776369-48776388 | None:intergenic | 30.0% | |
| AGCAACAAAAACAGTAGAAA+AGG | - | chr3.3:48777195-48777214 | None:intergenic | 30.0% | |
| ATGCGGTAAAGATAAATGTA+TGG | + | chr3.3:48777847-48777866 | MS.gene070293:intron | 30.0% | |
| ATTGTTGTAAGTTTGCAACA+TGG | + | chr3.3:48775108-48775127 | MS.gene070293:intron | 30.0% | |
| CAATACTCTAACATTGTGTT+TGG | + | chr3.3:48774718-48774737 | MS.gene070293:intron | 30.0% | |
| CATCAAATTAATGGGACTAA+TGG | + | chr3.3:48773846-48773865 | MS.gene070293:CDS | 30.0% | |
| CCTTAGAAGGTTAGAAAATA+GGG | + | chr3.3:48774313-48774332 | MS.gene070293:intron | 30.0% | |
| CCTTATAGTGAAAATCTCTT+GGG | - | chr3.3:48777776-48777795 | None:intergenic | 30.0% | |
| GCAACAAAAACAGTAGAAAA+GGG | - | chr3.3:48777194-48777213 | None:intergenic | 30.0% | |
| GCCATTCTAGTAAAATATGA+AGG | - | chr3.3:48773558-48773577 | None:intergenic | 30.0% | |
| TACTCACTGTATATTAGGAA+AGG | - | chr3.3:48775173-48775192 | None:intergenic | 30.0% | |
| TCCTTATAGTGAAAATCTCT+TGG | - | chr3.3:48777777-48777796 | None:intergenic | 30.0% | |
| TCTTGATCTTGATATTCTCA+TGG | - | chr3.3:48773580-48773599 | None:intergenic | 30.0% | |
| TGATGTCATATTAAAGCTAG+TGG | + | chr3.3:48774044-48774063 | MS.gene070293:intron | 30.0% | |
| TGGATAGTTGGTTATGATAT+TGG | + | chr3.3:48773786-48773805 | MS.gene070293:CDS | 30.0% | |
| TTATGTAATTCAATTAGGGG+TGG | - | chr3.3:48776068-48776087 | None:intergenic | 30.0% | |
| TTTAACTACCCGTTAGTATA+TGG | - | chr3.3:48775949-48775968 | None:intergenic | 30.0% | |
| TTTGTAAACAAGGACTTCAA+AGG | + | chr3.3:48778121-48778140 | MS.gene070293:CDS | 30.0% | |
| ! | ACGTAATTTATTAACGGGTA+CGG | + | chr3.3:48775889-48775908 | MS.gene070293:intron | 30.0% |
| ! | AGAGTGTTTCATTACCAAAA+TGG | + | chr3.3:48773618-48773637 | MS.gene070293:CDS | 30.0% |
| ! | AGTAGATTTGATGTGTTGTT+TGG | - | chr3.3:48776346-48776365 | None:intergenic | 30.0% |
| ! | ATACTTCCATGACATAGTTT+TGG | - | chr3.3:48775014-48775033 | None:intergenic | 30.0% |
| ! | ATGGTATGATGAATTTGCTT+GGG | - | chr3.3:48775547-48775566 | None:intergenic | 30.0% |
| ! | CACATTTTAGATGGAACATA+TGG | - | chr3.3:48778065-48778084 | None:intergenic | 30.0% |
| ! | CCTATTTTCTAACCTTCTAA+GGG | - | chr3.3:48774315-48774334 | None:intergenic | 30.0% |
| ! | GAACTTGAGTATTTTCCAAT+AGG | + | chr3.3:48776826-48776845 | MS.gene070293:intron | 30.0% |
| ! | TAGAGCTTTTCTTTGCAATA+TGG | + | chr3.3:48777052-48777071 | MS.gene070293:CDS | 30.0% |
| ! | TATGGTATGATGAATTTGCT+TGG | - | chr3.3:48775548-48775567 | None:intergenic | 30.0% |
| ! | TCATAGTTTCATGATTTTCC+GGG | + | chr3.3:48774514-48774533 | MS.gene070293:intron | 30.0% |
| ! | TGAATGATGAAGATTTTTCC+TGG | - | chr3.3:48777802-48777821 | None:intergenic | 30.0% |
| ! | TGTTTGTTAAAGTGTCCTTA+GGG | + | chr3.3:48776606-48776625 | MS.gene070293:intron | 30.0% |
| ! | TTGTTTGTTAAAGTGTCCTT+AGG | + | chr3.3:48776605-48776624 | MS.gene070293:intron | 30.0% |
| ! | TTTGAAAGTGTATTTGTGGA+AGG | - | chr3.3:48774667-48774686 | None:intergenic | 30.0% |
| ! | TTTGCAATATGGTTTGTGAT+GGG | + | chr3.3:48777063-48777082 | MS.gene070293:CDS | 30.0% |
| !! | ACCCTTTTAATTCTAGTACT+TGG | + | chr3.3:48773664-48773683 | MS.gene070293:CDS | 30.0% |
| !! | GATTTTGATATGAGCAGAAA+AGG | + | chr3.3:48776852-48776871 | MS.gene070293:intron | 30.0% |
| !! | TTTGTTGTTCCAAATCAGAA+AGG | - | chr3.3:48773884-48773903 | None:intergenic | 30.0% |
| !!! | CAATTTTGTGTTGTTTGTTG+TGG | + | chr3.3:48777971-48777990 | MS.gene070293:intron | 30.0% |
| !!! | GAAGTTTTGAAGAGAGAAAT+AGG | - | chr3.3:48776411-48776430 | None:intergenic | 30.0% |
| AAACCTAACAGTCTTCCATT+TGG | - | chr3.3:48776708-48776727 | None:intergenic | 35.0% | |
| AAACGTGACTAGAGTTTACA+AGG | - | chr3.3:48776789-48776808 | None:intergenic | 35.0% | |
| AAATCTCACAACTTCCATCT+TGG | + | chr3.3:48777298-48777317 | MS.gene070293:CDS | 35.0% | |
| AATCCGTGTCCATATACTAA+CGG | + | chr3.3:48775937-48775956 | MS.gene070293:intron | 35.0% | |
| ACACCTTGTATGTGATTAAG+GGG | + | chr3.3:48777731-48777750 | MS.gene070293:intron | 35.0% | |
| AGAAGAGAGATAAAAACACG+TGG | + | chr3.3:48774830-48774849 | MS.gene070293:intron | 35.0% | |
| AGTTGTTGAACGAATCAAAG+TGG | + | chr3.3:48776904-48776923 | MS.gene070293:intron | 35.0% | |
| ATCTCTATACGAGTAATCCA+CGG | + | chr3.3:48775336-48775355 | MS.gene070293:intron | 35.0% | |
| ATGACACCAAAACTATGTCA+TGG | + | chr3.3:48775005-48775024 | MS.gene070293:intron | 35.0% | |
| CAAAGAATGAGAAACCTGTT+TGG | + | chr3.3:48773751-48773770 | MS.gene070293:CDS | 35.0% | |
| CAATGTTCATGTTGTAACCA+AGG | - | chr3.3:48777248-48777267 | None:intergenic | 35.0% | |
| CATATCAAAATCGACCCTAT+TGG | - | chr3.3:48776844-48776863 | None:intergenic | 35.0% | |
| CCCTTAGAAGGTTAGAAAAT+AGG | + | chr3.3:48774312-48774331 | MS.gene070293:intron | 35.0% | |
| CTTGGTTACAACATGAACAT+TGG | + | chr3.3:48777246-48777265 | MS.gene070293:CDS | 35.0% | |
| GAAAACAGGTATTTCACTCT+TGG | + | chr3.3:48773915-48773934 | MS.gene070293:intron | 35.0% | |
| GAAGAGAGATAAAAACACGT+GGG | + | chr3.3:48774831-48774850 | MS.gene070293:intron | 35.0% | |
| GGAAAAGAGTAAAGGAAAGT+AGG | + | chr3.3:48774536-48774555 | MS.gene070293:intron | 35.0% | |
| GGGTACCATATTTATCCAAT+GGG | - | chr3.3:48775290-48775309 | None:intergenic | 35.0% | |
| GGTACCATATTTATCCAATG+GGG | - | chr3.3:48775289-48775308 | None:intergenic | 35.0% | |
| TCCATCTTGGAGATTTAAAG+TGG | + | chr3.3:48777311-48777330 | MS.gene070293:CDS | 35.0% | |
| TCTAACATTGTGTTTGGTTG+AGG | + | chr3.3:48774724-48774743 | MS.gene070293:intron | 35.0% | |
| TCTGCATCATTCTTCTTGTT+TGG | + | chr3.3:48777148-48777167 | MS.gene070293:CDS | 35.0% | |
| TGATCTTGAGATAAGGTAGT+TGG | - | chr3.3:48773534-48773553 | None:intergenic | 35.0% | |
| TTAGAACCAAGATCAGATCT+TGG | - | chr3.3:48773645-48773664 | None:intergenic | 35.0% | |
| TTAGATAAGGCACATGGAAA+AGG | + | chr3.3:48774287-48774306 | MS.gene070293:intron | 35.0% | |
| TTGCGATAGACTAATATCTC+CGG | - | chr3.3:48777683-48777702 | None:intergenic | 35.0% | |
| TTGCTTCTATTTCCTAAGGT+AGG | + | chr3.3:48776679-48776698 | MS.gene070293:intron | 35.0% | |
| TTTCCATGTGCCTTATCTAA+GGG | - | chr3.3:48774287-48774306 | None:intergenic | 35.0% | |
| ! | AAAGTGCTACTCCTAAAAAC+AGG | - | chr3.3:48774864-48774883 | None:intergenic | 35.0% |
| ! | ACTTTGGAGAGACTAAAAAC+AGG | - | chr3.3:48775040-48775059 | None:intergenic | 35.0% |
| ! | ATTTTCACTATAAGGAGTCC+AGG | + | chr3.3:48777781-48777800 | MS.gene070293:intron | 35.0% |
| ! | CATAGTTTCATGATTTTCCG+GGG | + | chr3.3:48774515-48774534 | MS.gene070293:intron | 35.0% |
| ! | CCCAAGAGATTTTCACTATA+AGG | + | chr3.3:48777773-48777792 | MS.gene070293:intron | 35.0% |
| ! | CCCTATTTTCTAACCTTCTA+AGG | - | chr3.3:48774316-48774335 | None:intergenic | 35.0% |
| ! | CTTTGCAATATGGTTTGTGA+TGG | + | chr3.3:48777062-48777081 | MS.gene070293:CDS | 35.0% |
| ! | CTTTGGAGAGACTAAAAACA+GGG | - | chr3.3:48775039-48775058 | None:intergenic | 35.0% |
| ! | GAAGTCCTTGTTTACAAAGA+GGG | - | chr3.3:48778119-48778138 | None:intergenic | 35.0% |
| ! | TAGGGCCTTCTAATTTTAGA+GGG | - | chr3.3:48775663-48775682 | None:intergenic | 35.0% |
| ! | TGAAGGTTGATCTTGAGATA+AGG | - | chr3.3:48773541-48773560 | None:intergenic | 35.0% |
| ! | TGAAGTCCTTGTTTACAAAG+AGG | - | chr3.3:48778120-48778139 | None:intergenic | 35.0% |
| ! | TTAGGGCCTTCTAATTTTAG+AGG | - | chr3.3:48775664-48775683 | None:intergenic | 35.0% |
| ! | TTTTCCATGTGCCTTATCTA+AGG | - | chr3.3:48774288-48774307 | None:intergenic | 35.0% |
| !! | AACATTGGTTCCTCTTCTAA+AGG | + | chr3.3:48777261-48777280 | MS.gene070293:CDS | 35.0% |
| !! | CAATTTCACAAGGGCATTAT+TGG | - | chr3.3:48775092-48775111 | None:intergenic | 35.0% |
| !! | CGCACCTCGTATTTTTAAAA+GGG | - | chr3.3:48776654-48776673 | None:intergenic | 35.0% |
| !! | GGTTTTTGTTTACACACACA+TGG | + | chr3.3:48775851-48775870 | MS.gene070293:intron | 35.0% |
| !! | TACAAAACCGACTTGTAAGA+TGG | + | chr3.3:48776753-48776772 | MS.gene070293:intron | 35.0% |
| !! | TCGCACCTCGTATTTTTAAA+AGG | - | chr3.3:48776655-48776674 | None:intergenic | 35.0% |
| !!! | TGACATAGTTTTGGTGTCAT+TGG | - | chr3.3:48775005-48775024 | None:intergenic | 35.0% |
| !!! | TGTTTTTAGGAGTAGCACTT+TGG | + | chr3.3:48774863-48774882 | MS.gene070293:intron | 35.0% |
| AATGGACCAAGATCTGATCT+TGG | + | chr3.3:48773636-48773655 | MS.gene070293:CDS | 40.0% | |
| ACAGGAATGTTGCATATGCT+TGG | + | chr3.3:48777996-48778015 | MS.gene070293:intron | 40.0% | |
| ACCATATTTATCCAATGGGG+CGG | - | chr3.3:48775286-48775305 | None:intergenic | 40.0% | |
| ACTCCAAATGGAAGACTGTT+AGG | + | chr3.3:48776702-48776721 | MS.gene070293:intron | 40.0% | |
| AGATGGAACATATGGGAACA+AGG | - | chr3.3:48778057-48778076 | None:intergenic | 40.0% | |
| AGTGAAAATCTCTTGGGACT+TGG | - | chr3.3:48777770-48777789 | None:intergenic | 40.0% | |
| AGTTCAGAACTTCTCCTGTT+TGG | + | chr3.3:48774791-48774810 | MS.gene070293:intron | 40.0% | |
| ATACCCGTTTATTATACCCG+CGG | + | chr3.3:48775968-48775987 | MS.gene070293:intron | 40.0% | |
| ATAGGAAAGAGAGAAAGAGC+AGG | + | chr3.3:48774751-48774770 | MS.gene070293:intron | 40.0% | |
| ATCCGTGTCCATATACTAAC+GGG | + | chr3.3:48775938-48775957 | MS.gene070293:intron | 40.0% | |
| CATCCCCTTAATCACATACA+AGG | - | chr3.3:48777737-48777756 | None:intergenic | 40.0% | |
| CGGGTACCATATTTATCCAA+TGG | - | chr3.3:48775291-48775310 | None:intergenic | 40.0% | |
| CTTTCTCTTTGCAACCAAAC+AGG | - | chr3.3:48774808-48774827 | None:intergenic | 40.0% | |
| GAAAGAGCAGGTAGAGAAAA+AGG | + | chr3.3:48774763-48774782 | MS.gene070293:intron | 40.0% | |
| GAAGAATGATGCAGAGAACT+TGG | - | chr3.3:48777143-48777162 | None:intergenic | 40.0% | |
| GTATCCGCGGGTATAATAAA+CGG | - | chr3.3:48775975-48775994 | None:intergenic | 40.0% | |
| GTGAAAATCTCTTGGGACTT+GGG | - | chr3.3:48777769-48777788 | None:intergenic | 40.0% | |
| GTGTTTGGTTGAGGTGAAAT+AGG | + | chr3.3:48774733-48774752 | MS.gene070293:intron | 40.0% | |
| TAAGGTAGTTGGTTGAGGTA+TGG | - | chr3.3:48773523-48773542 | None:intergenic | 40.0% | |
| TACCCGTTAGTATATGGACA+CGG | - | chr3.3:48775943-48775962 | None:intergenic | 40.0% | |
| TATCCGCGGGTATAATAAAC+GGG | - | chr3.3:48775974-48775993 | None:intergenic | 40.0% | |
| TCTCCATGTACCATATTGAC+CGG | - | chr3.3:48774607-48774626 | None:intergenic | 40.0% | |
| TCTCTATACGAGTAATCCAC+GGG | + | chr3.3:48775337-48775356 | MS.gene070293:intron | 40.0% | |
| TGACTAGAGTTTACAAGGAG+TGG | - | chr3.3:48776784-48776803 | None:intergenic | 40.0% | |
| TGAGATAAGGTAGTTGGTTG+AGG | - | chr3.3:48773528-48773547 | None:intergenic | 40.0% | |
| TGTAAGTTTGCAACATGGCA+CGG | + | chr3.3:48775113-48775132 | MS.gene070293:intron | 40.0% | |
| TGTTCCAAAACGTGAGTCAA+AGG | - | chr3.3:48777100-48777119 | None:intergenic | 40.0% | |
| TTGTACCATGCAGTGTATAC+AGG | + | chr3.3:48776995-48777014 | MS.gene070293:intron | 40.0% | |
| ! | ATCAGATGCACCTTTAGAAG+AGG | - | chr3.3:48777274-48777293 | None:intergenic | 40.0% |
| ! | ATGCAGAGAACTTGGAGTTT+TGG | - | chr3.3:48777135-48777154 | None:intergenic | 40.0% |
| ! | CTTTCCTTTACTCTTTTCCC+CGG | - | chr3.3:48774535-48774554 | None:intergenic | 40.0% |
| ! | GACCAAACATCTCATTGACT+TGG | + | chr3.3:48774580-48774599 | MS.gene070293:intron | 40.0% |
| ! | GATCAGATCTTGGTCCATTT+TGG | - | chr3.3:48773635-48773654 | None:intergenic | 40.0% |
| ! | GATTTGTTCCCGCTATTAAG+TGG | + | chr3.3:48777890-48777909 | MS.gene070293:intron | 40.0% |
| ! | GCCACTTTAAATCTCCAAGA+TGG | - | chr3.3:48777315-48777334 | None:intergenic | 40.0% |
| ! | GGTTTGTGATGGGAAATGTT+TGG | + | chr3.3:48777073-48777092 | MS.gene070293:CDS | 40.0% |
| ! | TTTTCCGGGGAAAAGAGTAA+AGG | + | chr3.3:48774528-48774547 | MS.gene070293:intron | 40.0% |
| !! | AAAACCGACTTGTAAGATGG+AGG | + | chr3.3:48776756-48776775 | MS.gene070293:intron | 40.0% |
| !! | CATTTCCTTTAGGGTGTGTT+TGG | - | chr3.3:48776443-48776462 | None:intergenic | 40.0% |
| !! | TATGTTACTTACCGGCTCTT+CGG | - | chr3.3:48777391-48777410 | None:intergenic | 40.0% |
| !! | TTGGTGTCATTGGTGTCATT+GGG | - | chr3.3:48774995-48775014 | None:intergenic | 40.0% |
| !! | TTTGGTGTCATTGGTGTCAT+TGG | - | chr3.3:48774996-48775015 | None:intergenic | 40.0% |
| AAGTGCTAACAAGTGCCCTA+AGG | - | chr3.3:48776624-48776643 | None:intergenic | 45.0% | |
| AGAAACCTGTTTGGCCTATG+AGG | + | chr3.3:48773760-48773779 | MS.gene070293:CDS | 45.0% | |
| ATAAAATCCGTCATGGGGAC+GGG | - | chr3.3:48776014-48776033 | None:intergenic | 45.0% | |
| CAACATGGCACGGACAATAA+CGG | + | chr3.3:48775123-48775142 | MS.gene070293:intron | 45.0% | |
| CACACATCCACACACATCAA+TGG | + | chr3.3:48774959-48774978 | MS.gene070293:intron | 45.0% | |
| CACGGGTATTTAGATACCCA+CGG | + | chr3.3:48775354-48775373 | MS.gene070293:intron | 45.0% | |
| CATATTTATCCAATGGGGCG+GGG | - | chr3.3:48775284-48775303 | None:intergenic | 45.0% | |
| CCAAACCAAACACACCCTAA+AGG | + | chr3.3:48776435-48776454 | MS.gene070293:intron | 45.0% | |
| CCAACTATCCAAACCCTCAT+AGG | - | chr3.3:48773777-48773796 | None:intergenic | 45.0% | |
| CCATATTTATCCAATGGGGC+GGG | - | chr3.3:48775285-48775304 | None:intergenic | 45.0% | |
| CCTATGAGGGTTTGGATAGT+TGG | + | chr3.3:48773774-48773793 | MS.gene070293:CDS | 45.0% | |
| CTACTCCTAAAAACAGGCGT+GGG | - | chr3.3:48774858-48774877 | None:intergenic | 45.0% | |
| CTCCATGTACCATATTGACC+GGG | - | chr3.3:48774606-48774625 | None:intergenic | 45.0% | |
| GAAACCTGTTTGGCCTATGA+GGG | + | chr3.3:48773761-48773780 | MS.gene070293:CDS | 45.0% | |
| GATAAAATCCGTCATGGGGA+CGG | - | chr3.3:48776015-48776034 | None:intergenic | 45.0% | |
| GATGCAAGCTATGACACCAA+TGG | - | chr3.3:48774905-48774924 | None:intergenic | 45.0% | |
| GCAAAAAAATTCGTACCCGC+GGG | - | chr3.3:48776046-48776065 | None:intergenic | 45.0% | |
| GCATATCATCTGATCGCTTG+AGG | + | chr3.3:48777445-48777464 | MS.gene070293:intron | 45.0% | |
| GGCAAAAAAATTCGTACCCG+CGG | - | chr3.3:48776047-48776066 | None:intergenic | 45.0% | |
| GGCCAAGTCAATGAGATGTT+TGG | - | chr3.3:48774585-48774604 | None:intergenic | 45.0% | |
| GTACTCCTGTATACACTGCA+TGG | - | chr3.3:48777003-48777022 | None:intergenic | 45.0% | |
| TAACCTAGCCGCAAAAGTAG+AGG | + | chr3.3:48775757-48775776 | MS.gene070293:intron | 45.0% | |
| TCCTAAGGTAGGACTCCAAA+TGG | + | chr3.3:48776690-48776709 | MS.gene070293:intron | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | - | chr3.3:48774958-48774977 | None:intergenic | 45.0% | |
| TGCTGCCCTCTTTGTAAACA+AGG | + | chr3.3:48778111-48778130 | MS.gene070293:CDS | 45.0% | |
| TTGATGTCAATGGGTATCCG+CGG | + | chr3.3:48775236-48775255 | MS.gene070293:intron | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | - | chr3.3:48774959-48774978 | None:intergenic | 45.0% | |
| ! | ACGGACAATAACGGAAGCAT+CGG | + | chr3.3:48775132-48775151 | MS.gene070293:intron | 45.0% |
| ! | AGTGGGTTTCTTCGCTACTT+TGG | - | chr3.3:48775056-48775075 | None:intergenic | 45.0% |
| ! | TCCATTTGGAGTCCTACCTT+AGG | - | chr3.3:48776694-48776713 | None:intergenic | 45.0% |
| ! | TGCTCTTGGCCTTTCTGATT+TGG | + | chr3.3:48773872-48773891 | MS.gene070293:CDS | 45.0% |
| ! | TGGTCCTTTGACTCACGTTT+TGG | + | chr3.3:48777093-48777112 | MS.gene070293:CDS | 45.0% |
| ! | TTTGATGATACACGTACCCG+CGG | - | chr3.3:48775919-48775938 | None:intergenic | 45.0% |
| !! | AACATCTCATTGACTTGGCC+CGG | + | chr3.3:48774585-48774604 | MS.gene070293:intron | 45.0% |
| !! | ATGGAAAAGGTGCCCTTAGA+AGG | + | chr3.3:48774300-48774319 | MS.gene070293:intron | 45.0% |
| !! | CCTTTAGGGTGTGTTTGGTT+TGG | - | chr3.3:48776438-48776457 | None:intergenic | 45.0% |
| !! | CTTCCTCTCCTCTACTTTTG+CGG | - | chr3.3:48775768-48775787 | None:intergenic | 45.0% |
| !! | GTGTTGTTTGTTGTGGTGAC+AGG | + | chr3.3:48777978-48777997 | MS.gene070293:intron | 45.0% |
| !! | TGGTGTCATTGGTGTCATTG+GGG | - | chr3.3:48774994-48775013 | None:intergenic | 45.0% |
| !! | ATTGAAATAATTTATAAAAT+CGG | - | chr3.3:48777706-48777725 | None:intergenic | 5.0% |
| !! | TATAAAAATAAATAAACATA+TGG | - | chr3.3:48773980-48773999 | None:intergenic | 5.0% |
| !! | TTAAAATAAATTTGAATAAA+AGG | + | chr3.3:48776194-48776213 | MS.gene070293:intron | 5.0% |
| !!! | AAATATATATTTTTTTTTGA+GGG | + | chr3.3:48774397-48774416 | MS.gene070293:intron | 5.0% |
| !!! | TAAATATATATTTTTTTTTG+AGG | + | chr3.3:48774396-48774415 | MS.gene070293:intron | 5.0% |
| !!! | TAATAATTTTTTTTATTGTA+GGG | + | chr3.3:48776253-48776272 | MS.gene070293:intron | 5.0% |
| !!! | TATTTTTATAAATTTATATG+TGG | + | chr3.3:48773990-48774009 | MS.gene070293:intron | 5.0% |
| !!! | TTAATAATTTTTTTTATTGT+AGG | + | chr3.3:48776252-48776271 | MS.gene070293:intron | 5.0% |
| AAGATTGATCGCCGAAGAGC+CGG | + | chr3.3:48777377-48777396 | MS.gene070293:CDS | 50.0% | |
| AGAGATACCCGCACGGATAT+GGG | - | chr3.3:48775322-48775341 | None:intergenic | 50.0% | |
| ATCGTGGCCATTGATGTGTG+TGG | - | chr3.3:48774969-48774988 | None:intergenic | 50.0% | |
| CAAAAATCCATGGGTACCCG+CGG | - | chr3.3:48775384-48775403 | None:intergenic | 50.0% | |
| CAAACCCTCATAGGCCAAAC+AGG | - | chr3.3:48773768-48773787 | None:intergenic | 50.0% | |
| CACCAATGGCACCAAAGCTA+TGG | - | chr3.3:48774891-48774910 | None:intergenic | 50.0% | |
| CCACTCATTAGCACACTCCT+TGG | + | chr3.3:48777228-48777247 | MS.gene070293:CDS | 50.0% | |
| CCCGCCCCATTGGATAAATA+TGG | + | chr3.3:48775282-48775301 | MS.gene070293:intron | 50.0% | |
| CCGCGGATAAAATCCGTCAT+GGG | - | chr3.3:48776020-48776039 | None:intergenic | 50.0% | |
| CGCGGATAAAATCCGTCATG+GGG | - | chr3.3:48776019-48776038 | None:intergenic | 50.0% | |
| CGTGGGTATCTAAATACCCG+TGG | - | chr3.3:48775356-48775375 | None:intergenic | 50.0% | |
| CTCGTATAGAGATACCCGCA+CGG | - | chr3.3:48775329-48775348 | None:intergenic | 50.0% | |
| CTGTTTGGCCTATGAGGGTT+TGG | + | chr3.3:48773766-48773785 | MS.gene070293:CDS | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | - | chr3.3:48774957-48774976 | None:intergenic | 50.0% | |
| GCTACTCCTAAAAACAGGCG+TGG | - | chr3.3:48774859-48774878 | None:intergenic | 50.0% | |
| GGCACCTCCATCTTACAAGT+CGG | - | chr3.3:48776763-48776782 | None:intergenic | 50.0% | |
| GGGACTAATGGAGATGCTCT+TGG | + | chr3.3:48773858-48773877 | MS.gene070293:CDS | 50.0% | |
| GTGCCCTTAGATAAGGCACA+TGG | + | chr3.3:48774281-48774300 | MS.gene070293:intron | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | - | chr3.3:48774932-48774951 | None:intergenic | 50.0% | |
| TAAAATCCGTCATGGGGACG+GGG | - | chr3.3:48776013-48776032 | None:intergenic | 50.0% | |
| TAGAGATACCCGCACGGATA+TGG | - | chr3.3:48775323-48775342 | None:intergenic | 50.0% | |
| TAGATACCCACGGATATCCG+CGG | + | chr3.3:48775364-48775383 | MS.gene070293:intron | 50.0% | |
| TAGCCGCAAAAGTAGAGGAG+AGG | + | chr3.3:48775762-48775781 | MS.gene070293:intron | 50.0% | |
| TATCATACTACCCGTACCCG+CGG | - | chr3.3:48775256-48775275 | None:intergenic | 50.0% | |
| TCCGCGGATAAAATCCGTCA+TGG | - | chr3.3:48776021-48776040 | None:intergenic | 50.0% | |
| TGATGTCAATGGGTATCCGC+GGG | + | chr3.3:48775237-48775256 | MS.gene070293:intron | 50.0% | |
| TGTGTGATGTGTGTGTGTGG+TGG | - | chr3.3:48774929-48774948 | None:intergenic | 50.0% | |
| ! | ATTTTATCCGCGGATACCCG+CGG | + | chr3.3:48776027-48776046 | MS.gene070293:intron | 50.0% |
| ! | CCAAGGAGTGTGCTAATGAG+TGG | - | chr3.3:48777231-48777250 | None:intergenic | 50.0% |
| ! | TTGATGATACACGTACCCGC+GGG | - | chr3.3:48775918-48775937 | None:intergenic | 50.0% |
| !! | GCACTTTGGTGCCATAGCTT+TGG | + | chr3.3:48774877-48774896 | MS.gene070293:intron | 50.0% |
| !! | TCTCCTCTACTTTTGCGGCT+AGG | - | chr3.3:48775763-48775782 | None:intergenic | 50.0% |
| !! | TGCCATAGCTTTGGTGCCAT+TGG | + | chr3.3:48774886-48774905 | MS.gene070293:intron | 50.0% |
| !! | TGCCTTATCTAAGGGCACCT+AGG | - | chr3.3:48774279-48774298 | None:intergenic | 50.0% |
| !! | TGGTGTCATTGGGGAAATCG+TGG | - | chr3.3:48774985-48775004 | None:intergenic | 50.0% |
| !! | TTGACTTGGCCCGGTCAATA+TGG | + | chr3.3:48774594-48774613 | MS.gene070293:intron | 50.0% |
| !!! | CCCATGACGGATTTTATCCG+CGG | + | chr3.3:48776017-48776036 | MS.gene070293:intron | 50.0% |
| AGATACCCACGGATATCCGC+GGG | + | chr3.3:48775365-48775384 | MS.gene070293:intron | 55.0% | |
| AGCCTCTCCTACAGCTGAAG+TGG | + | chr3.3:48774252-48774271 | MS.gene070293:intron | 55.0% | |
| AGCTGTAGGAGAGGCTTGTG+GGG | - | chr3.3:48774248-48774267 | None:intergenic | 55.0% | |
| CAGCTGTAGGAGAGGCTTGT+GGG | - | chr3.3:48774249-48774268 | None:intergenic | 55.0% | |
| GAGATACCCGCACGGATATG+GGG | - | chr3.3:48775321-48775340 | None:intergenic | 55.0% | |
| GCCTCTCCTACAGCTGAAGT+GGG | + | chr3.3:48774253-48774272 | MS.gene070293:intron | 55.0% | |
| GGCCCGGTCAATATGGTACA+TGG | + | chr3.3:48774601-48774620 | MS.gene070293:intron | 55.0% | |
| GGCCTAGGTGCCCTTAGATA+AGG | + | chr3.3:48774274-48774293 | MS.gene070293:intron | 55.0% | |
| GGTAGCTAAACGGGTATCCG+CGG | - | chr3.3:48775988-48776007 | None:intergenic | 55.0% | |
| GTAGCTAAACGGGTATCCGC+GGG | - | chr3.3:48775987-48776006 | None:intergenic | 55.0% | |
| TCAATGGGTATCCGCGGGTA+CGG | + | chr3.3:48775242-48775261 | MS.gene070293:intron | 55.0% | |
| TCAGCTGTAGGAGAGGCTTG+TGG | - | chr3.3:48774250-48774269 | None:intergenic | 55.0% | |
| TTTATCCAATGGGGCGGGGA+CGG | - | chr3.3:48775280-48775299 | None:intergenic | 55.0% | |
| ! | TTAACGGGTACGGATACCCG+CGG | + | chr3.3:48775899-48775918 | MS.gene070293:intron | 55.0% |
| ! | TTTTATCCGCGGATACCCGC+GGG | + | chr3.3:48776028-48776047 | MS.gene070293:intron | 55.0% |
| !! | TGGGACCCACGCCTGTTTTT+AGG | + | chr3.3:48774850-48774869 | MS.gene070293:intron | 55.0% |
| ACGGATATGGGGACGGGTAC+GGG | - | chr3.3:48775310-48775329 | None:intergenic | 60.0% | |
| CAATGGGTATCCGCGGGTAC+GGG | + | chr3.3:48775243-48775262 | MS.gene070293:intron | 60.0% | |
| CACGGATATGGGGACGGGTA+CGG | - | chr3.3:48775311-48775330 | None:intergenic | 60.0% | |
| CCTACAGCTGAAGTGGGCCT+AGG | + | chr3.3:48774259-48774278 | MS.gene070293:intron | 60.0% | |
| CCTAGGCCCACTTCAGCTGT+AGG | - | chr3.3:48774262-48774281 | None:intergenic | 60.0% | |
| GCCCACTTCAGCTGTAGGAG+AGG | - | chr3.3:48774257-48774276 | None:intergenic | 60.0% | |
| TACCCGCACGGATATGGGGA+CGG | - | chr3.3:48775317-48775336 | None:intergenic | 60.0% | |
| TACCCGTCCCCATATCCGTG+CGG | + | chr3.3:48775311-48775330 | MS.gene070293:intron | 60.0% | |
| ! | TAACGGGTACGGATACCCGC+GGG | + | chr3.3:48775900-48775919 | MS.gene070293:intron | 60.0% |
| AATCCGTCATGGGGACGGGG+CGG | - | chr3.3:48776010-48776029 | None:intergenic | 65.0% | |
| ACCCGCACGGATATGGGGAC+GGG | - | chr3.3:48775316-48775335 | None:intergenic | 65.0% | |
| ACCCGTCCCCATATCCGTGC+GGG | + | chr3.3:48775312-48775331 | MS.gene070293:intron | 65.0% | |
| CGGATATCCGCGGGTACCCA+TGG | + | chr3.3:48775374-48775393 | MS.gene070293:intron | 65.0% | |
| GACGGGGCGGGTAGCTAAAC+GGG | - | chr3.3:48775997-48776016 | None:intergenic | 65.0% | |
| GATATCCGTCCCCGCCCCAT+TGG | + | chr3.3:48775272-48775291 | MS.gene070293:intron | 65.0% | |
| GGACGGGGCGGGTAGCTAAA+CGG | - | chr3.3:48775998-48776017 | None:intergenic | 65.0% | |
| GGGTACCCGCGGATATCCGT+GGG | - | chr3.3:48775373-48775392 | None:intergenic | 65.0% | |
| TGGGTACCCGCGGATATCCG+TGG | - | chr3.3:48775374-48775393 | None:intergenic | 65.0% | |
| TTCGTACCCGCGGGTATCCG+CGG | - | chr3.3:48776037-48776056 | None:intergenic | 65.0% | |
| ATCCGTCATGGGGACGGGGC+GGG | - | chr3.3:48776009-48776028 | None:intergenic | 70.0% | |
| TACCCGCCCCGTCCCCATGA+CGG | + | chr3.3:48776004-48776023 | MS.gene070293:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48773501 | 48778146 | 48773501 | ID=MS.gene070293 |
| chr3.3 | mRNA | 48773501 | 48778146 | 48773501 | ID=MS.gene070293.t1;Parent=MS.gene070293 |
| chr3.3 | exon | 48773501 | 48773922 | 48773501 | ID=MS.gene070293.t1.exon1;Parent=MS.gene070293.t1 |
| chr3.3 | CDS | 48773501 | 48773922 | 48773501 | ID=cds.MS.gene070293.t1;Parent=MS.gene070293.t1 |
| chr3.3 | exon | 48777008 | 48777398 | 48777008 | ID=MS.gene070293.t1.exon2;Parent=MS.gene070293.t1 |
| chr3.3 | CDS | 48777008 | 48777398 | 48777008 | ID=cds.MS.gene070293.t1;Parent=MS.gene070293.t1 |
| chr3.3 | exon | 48778000 | 48778146 | 48778000 | ID=MS.gene070293.t1.exon3;Parent=MS.gene070293.t1 |
| chr3.3 | CDS | 48778000 | 48778146 | 48778000 | ID=cds.MS.gene070293.t1;Parent=MS.gene070293.t1 |
| Gene Sequence |
| Protein sequence |
