Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04154.t1 | RHN67442.1 | 98.5 | 265 | 4 | 0 | 1 | 265 | 22 | 286 | 1.40E-146 | 528.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04154.t1 | Q8GUU2 | 26.5 | 189 | 125 | 5 | 67 | 245 | 89 | 273 | 3.7e-10 | 67.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04154.t1 | A0A396IPD2 | 98.5 | 265 | 4 | 0 | 1 | 265 | 22 | 286 | 1.0e-146 | 528.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83063 | MS.gene04154 | PPI |
| MS.gene08162 | MS.gene04154 | PPI |
| MS.gene41778 | MS.gene04154 | PPI |
| MS.gene026525 | MS.gene04154 | PPI |
| MS.gene042467 | MS.gene04154 | PPI |
| MS.gene98977 | MS.gene04154 | PPI |
| MS.gene25181 | MS.gene04154 | PPI |
| MS.gene067859 | MS.gene04154 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04154.t1 | MTR_5g096410 | 75.294 | 255 | 62 | 1 | 12 | 265 | 39 | 293 | 2.89e-121 | 350 |
| MS.gene04154.t1 | MTR_5g096410 | 74.118 | 255 | 62 | 2 | 12 | 265 | 39 | 290 | 8.29e-117 | 338 |
| MS.gene04154.t1 | MTR_5g096410 | 71.765 | 255 | 59 | 2 | 12 | 265 | 39 | 281 | 3.62e-110 | 321 |
| MS.gene04154.t1 | MTR_3g107995 | 33.766 | 231 | 125 | 5 | 49 | 253 | 62 | 290 | 5.74e-32 | 121 |
| MS.gene04154.t1 | MTR_1g011380 | 33.636 | 220 | 115 | 5 | 48 | 238 | 84 | 301 | 2.02e-31 | 120 |
| MS.gene04154.t1 | MTR_8g105330 | 24.885 | 217 | 139 | 6 | 67 | 263 | 69 | 281 | 1.91e-16 | 78.2 |
| MS.gene04154.t1 | MTR_1g032440 | 26.178 | 191 | 126 | 4 | 67 | 246 | 80 | 266 | 1.24e-13 | 70.1 |
| MS.gene04154.t1 | MTR_1g032440 | 26.178 | 191 | 126 | 4 | 67 | 246 | 80 | 266 | 1.30e-13 | 70.1 |
| MS.gene04154.t1 | MTR_7g088500 | 25.000 | 180 | 108 | 6 | 79 | 254 | 63 | 219 | 4.82e-12 | 65.1 |
| MS.gene04154.t1 | MTR_4g102870 | 24.365 | 197 | 123 | 5 | 67 | 241 | 85 | 277 | 3.80e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04154.t1 | AT5G55970 | 70.742 | 229 | 65 | 1 | 13 | 241 | 49 | 275 | 1.42e-114 | 332 |
| MS.gene04154.t1 | AT5G55970 | 70.742 | 229 | 65 | 1 | 13 | 241 | 49 | 275 | 5.17e-113 | 329 |
| MS.gene04154.t1 | AT5G55970 | 70.742 | 229 | 65 | 1 | 13 | 241 | 49 | 275 | 5.17e-113 | 329 |
| MS.gene04154.t1 | AT4G26580 | 65.714 | 245 | 80 | 2 | 14 | 255 | 46 | 289 | 4.15e-109 | 319 |
| MS.gene04154.t1 | AT4G26580 | 65.714 | 245 | 80 | 2 | 14 | 255 | 46 | 289 | 4.15e-109 | 319 |
| MS.gene04154.t1 | AT1G80400 | 31.624 | 234 | 124 | 6 | 39 | 241 | 92 | 320 | 1.74e-33 | 126 |
| MS.gene04154.t1 | AT4G32600 | 32.773 | 238 | 128 | 6 | 50 | 257 | 107 | 342 | 3.59e-33 | 126 |
| MS.gene04154.t1 | AT4G32600 | 32.773 | 238 | 128 | 6 | 50 | 257 | 107 | 342 | 3.59e-33 | 126 |
| MS.gene04154.t1 | AT1G68070 | 29.592 | 196 | 116 | 8 | 70 | 257 | 83 | 264 | 8.53e-15 | 73.6 |
| MS.gene04154.t1 | AT3G61180 | 23.671 | 207 | 129 | 6 | 67 | 252 | 96 | 294 | 2.01e-14 | 72.8 |
| MS.gene04154.t1 | AT2G01735 | 26.455 | 189 | 125 | 5 | 67 | 245 | 89 | 273 | 2.81e-14 | 72.4 |
| MS.gene04154.t1 | AT4G11680 | 28.947 | 190 | 110 | 7 | 67 | 240 | 121 | 301 | 4.74e-12 | 65.9 |
| MS.gene04154.t1 | AT4G11680 | 28.947 | 190 | 110 | 7 | 67 | 240 | 121 | 301 | 7.77e-12 | 65.5 |
Find 46 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGTTGTTACTTTA+TGG | 0.063293 | 3.1:+45090537 | MS.gene04154:CDS |
| TGCTCTTGGCCTTTCTGATT+TGG | 0.217192 | 3.1:+45090593 | MS.gene04154:CDS |
| GATCAGATCTTGGTCCATTT+TGG | 0.217801 | 3.1:-45090353 | None:intergenic |
| GGAAGATATCATCAAATTAA+TGG | 0.236379 | 3.1:+45090558 | MS.gene04154:CDS |
| TCTGCATCATTCTTCTTGTT+TGG | 0.260239 | 3.1:+45092054 | MS.gene04154:CDS |
| TGGATAGTTGGTTATGATAT+TGG | 0.260558 | 3.1:+45090507 | MS.gene04154:CDS |
| ATGCAGAGAACTTGAAGTTT+TGG | 0.276264 | 3.1:-45092038 | None:intergenic |
| TGGTCCTTTGACTCACGTTT+TGG | 0.318994 | 3.1:+45091999 | MS.gene04154:CDS |
| AGAGTGTTTCATTACCAAAA+TGG | 0.321656 | 3.1:+45090339 | MS.gene04154:CDS |
| ATCCAAGTACTAGAATTAAA+AGG | 0.345464 | 3.1:-45090387 | None:intergenic |
| TTGTACCATGCAGTGTATAC+AGG | 0.398135 | 3.1:+45091901 | MS.gene04154:intron |
| GAAGATATCATCAAATTAAT+GGG | 0.398923 | 3.1:+45090559 | MS.gene04154:CDS |
| AACAAGTTCAATATTTACTT+TGG | 0.401772 | 3.1:+45090443 | MS.gene04154:CDS |
| ATCATTGTTAACATCTACTT+TGG | 0.411799 | 3.1:-45092246 | None:intergenic |
| CACACCCTCATAGGCCAAAC+AGG | 0.413740 | 3.1:-45090486 | None:intergenic |
| CCAACTATCCACACCCTCAT+AGG | 0.417730 | 3.1:-45090495 | None:intergenic |
| AAACAAACAATGAAGAAAAC+AGG | 0.426552 | 3.1:+45090622 | MS.gene04154:CDS |
| TATGTTACTTACCGGCTCTT+CGG | 0.429112 | 3.1:-45092294 | None:intergenic |
| TGATCTTGAGATAAGGTAGT+TGG | 0.435282 | 3.1:-45090252 | None:intergenic |
| CAAAGAGTGAGAAACCTGTT+TGG | 0.440373 | 3.1:+45090472 | MS.gene04154:CDS |
| AACATTGGTTCCTCTTCTAA+AGG | 0.446577 | 3.1:+45092167 | MS.gene04154:CDS |
| AAATCTCACAACTTCCATCT+TGG | 0.447583 | 3.1:+45092204 | MS.gene04154:CDS |
| CCTATGAGGGTGTGGATAGT+TGG | 0.473928 | 3.1:+45090495 | MS.gene04154:CDS |
| AAGATTGATCGCCGAAGAGC+CGG | 0.485021 | 3.1:+45092283 | MS.gene04154:CDS |
| GGGACTAATGCAGATGCTCT+TGG | 0.495341 | 3.1:+45090579 | MS.gene04154:CDS |
| AATGGACCAAGATCTGATCT+TGG | 0.496984 | 3.1:+45090357 | MS.gene04154:CDS |
| TGAGATAAGGTAGTTGGTTG+AGG | 0.509851 | 3.1:-45090246 | None:intergenic |
| CTTTGCAATATGGTTTGTGA+TGG | 0.515501 | 3.1:+45091968 | MS.gene04154:CDS |
| CTTGGTTACAACATGAACAT+TGG | 0.516268 | 3.1:+45092152 | MS.gene04154:CDS |
| AGAAACCTGTTTGGCCTATG+AGG | 0.520050 | 3.1:+45090481 | MS.gene04154:CDS |
| TCCATCTTGGAGATTTAAAG+TGG | 0.525434 | 3.1:+45092217 | MS.gene04154:CDS |
| TAAGGTAGTTGGTTGAGGCA+TGG | 0.530067 | 3.1:-45090241 | None:intergenic |
| TTAGAACCAAGATCAGATCT+TGG | 0.530137 | 3.1:-45090363 | None:intergenic |
| TCTTGATCTTGATATTCTCA+TGG | 0.531696 | 3.1:-45090298 | None:intergenic |
| CCACTCATTAGCACACTCCT+TGG | 0.535217 | 3.1:+45092134 | MS.gene04154:CDS |
| GGTTTGTGATGGGAAATGTT+TGG | 0.542130 | 3.1:+45091979 | MS.gene04154:CDS |
| GCCACTTTAAATCTCCAAGA+TGG | 0.543549 | 3.1:-45092218 | None:intergenic |
| TTTGCTGTTCCAAATCAGAA+AGG | 0.547175 | 3.1:-45090602 | None:intergenic |
| TGTTCCAAAACGTGAGTCAA+AGG | 0.552816 | 3.1:-45092003 | None:intergenic |
| TGAAGGTTGATCTTGAGATA+AGG | 0.573330 | 3.1:-45090259 | None:intergenic |
| CTGTTTGGCCTATGAGGGTG+TGG | 0.576993 | 3.1:+45090487 | MS.gene04154:CDS |
| ATCAGATGCACCTTTAGAAG+AGG | 0.578523 | 3.1:-45092177 | None:intergenic |
| TTTGCAATATGGTTTGTGAT+GGG | 0.603007 | 3.1:+45091969 | MS.gene04154:CDS |
| CAATGTTCATGTTGTAACCA+AGG | 0.621288 | 3.1:-45092151 | None:intergenic |
| GAAACCTGTTTGGCCTATGA+GGG | 0.622351 | 3.1:+45090482 | MS.gene04154:CDS |
| CCAAGGAGTGTGCTAATGAG+TGG | 0.648597 | 3.1:-45092134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAATTTATAAAAATA+TGG | - | chr3.1:45090738-45090757 | None:intergenic | 0.0% |
| !!! | TATTTTTATAAATTTATATA+TGG | + | chr3.1:45090738-45090757 | MS.gene04154:intron | 0.0% |
| !! | AAATATGAAAAAAGAAAAAT+AGG | + | chr3.1:45092873-45092892 | MS.gene04154:intron | 10.0% |
| !! | AATATGAAAAAAGAAAAATA+GGG | + | chr3.1:45092874-45092893 | MS.gene04154:intron | 10.0% |
| !! | TAGTCAATAAAAATATATAA+AGG | - | chr3.1:45092565-45092584 | None:intergenic | 10.0% |
| !! | TATAGAAAATTTACTTTATA+AGG | - | chr3.1:45093058-45093077 | None:intergenic | 10.0% |
| !! | TCATATAAGATTTAATTAAA+TGG | - | chr3.1:45093636-45093655 | None:intergenic | 10.0% |
| !! | TTTATATAAAATTACTTCTT+AGG | + | chr3.1:45090679-45090698 | MS.gene04154:intron | 10.0% |
| !!! | AAATATAATTTTTTTATTGG+TGG | + | chr3.1:45091163-45091182 | MS.gene04154:intron | 10.0% |
| !!! | AATATAATTTTTTTATTGGT+GGG | + | chr3.1:45091164-45091183 | MS.gene04154:intron | 10.0% |
| !!! | TTAAAGTATAAATTTTATCT+GGG | + | chr3.1:45091511-45091530 | MS.gene04154:intron | 10.0% |
| !!! | TTTAAAGTATAAATTTTATC+TGG | + | chr3.1:45091510-45091529 | MS.gene04154:intron | 10.0% |
| !! | AAAATGTTACAAACAAAATA+TGG | - | chr3.1:45093965-45093984 | None:intergenic | 15.0% |
| !! | AAATGTTACAAACAAAATAT+GGG | - | chr3.1:45093964-45093983 | None:intergenic | 15.0% |
| !! | ATAAAAAAATCACTTAATAG+TGG | - | chr3.1:45093358-45093377 | None:intergenic | 15.0% |
| !! | CTATGATAACTTTATATTTA+AGG | - | chr3.1:45091259-45091278 | None:intergenic | 15.0% |
| !! | TAAAAAAATCACTTAATAGT+GGG | - | chr3.1:45093357-45093376 | None:intergenic | 15.0% |
| !! | TAATACAAAAAAAAACTCTT+TGG | + | chr3.1:45094068-45094087 | MS.gene04154:intron | 15.0% |
| !! | TCAAAAAAAAAATGTCAATT+AGG | - | chr3.1:45091102-45091121 | None:intergenic | 15.0% |
| !!! | AGCATTTTAATGTAAAATTT+TGG | - | chr3.1:45093750-45093769 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTTTATTGGTG+GGG | + | chr3.1:45091165-45091184 | MS.gene04154:intron | 15.0% |
| !!! | ATATTTTTATGAAGTATTGT+TGG | - | chr3.1:45091408-45091427 | None:intergenic | 15.0% |
| !!! | GATACCATTAATTAATTTTT+AGG | + | chr3.1:45090823-45090842 | MS.gene04154:intron | 15.0% |
| !!! | GGGAAATATAATTTTTTTAT+TGG | + | chr3.1:45091160-45091179 | MS.gene04154:intron | 15.0% |
| !!! | TATCAGAAACAATTTTAAAT+AGG | - | chr3.1:45091842-45091861 | None:intergenic | 15.0% |
| !! | AACAAGTTCAATATTTACTT+TGG | + | chr3.1:45090443-45090462 | MS.gene04154:CDS | 20.0% |
| !! | AACATACAACAAAACAAAAT+TGG | + | chr3.1:45091320-45091339 | MS.gene04154:intron | 20.0% |
| !! | AAGATTTAATTAAATGGTGT+TGG | - | chr3.1:45093630-45093649 | None:intergenic | 20.0% |
| !! | AATTTGAATTATGTTCCTTA+AGG | - | chr3.1:45093878-45093897 | None:intergenic | 20.0% |
| !! | ACATACAACAAAACAAAATT+GGG | + | chr3.1:45091321-45091340 | MS.gene04154:intron | 20.0% |
| !! | AGATAACAAAAACAAAAGAT+AGG | + | chr3.1:45092739-45092758 | MS.gene04154:intron | 20.0% |
| !! | ATCTACACATACATATTATT+AGG | - | chr3.1:45093403-45093422 | None:intergenic | 20.0% |
| !! | GAAGATATCATCAAATTAAT+GGG | + | chr3.1:45090559-45090578 | MS.gene04154:CDS | 20.0% |
| !! | TAAGTTATATTCATTCTTTG+AGG | + | chr3.1:45092709-45092728 | MS.gene04154:intron | 20.0% |
| !! | TGGACTAATCTATAATTTAA+GGG | + | chr3.1:45090758-45090777 | MS.gene04154:intron | 20.0% |
| !! | TTGGCCTAAAAATTAATTAA+TGG | - | chr3.1:45090830-45090849 | None:intergenic | 20.0% |
| !!! | ACATTTTAAATGGAACATAT+GGG | - | chr3.1:45093520-45093539 | None:intergenic | 20.0% |
| !!! | ATGGACTAATCTATAATTTA+AGG | + | chr3.1:45090757-45090776 | MS.gene04154:intron | 20.0% |
| !!! | ATTGATCAACACATTTTAAA+TGG | - | chr3.1:45093530-45093549 | None:intergenic | 20.0% |
| !!! | ATTTAAAATGTGTTGATCAA+TGG | + | chr3.1:45093529-45093548 | MS.gene04154:intron | 20.0% |
| !!! | CTTAATTTGTTGTTACTTTA+TGG | + | chr3.1:45090537-45090556 | MS.gene04154:CDS | 20.0% |
| !!! | GAAAACAGGTATTTTATTAT+TGG | + | chr3.1:45090636-45090655 | MS.gene04154:intron | 20.0% |
| !!! | TAAATGACTTTTATCTTATG+CGG | + | chr3.1:45093287-45093306 | MS.gene04154:intron | 20.0% |
| !!! | TAATGTAAAATTTTGGTTAC+CGG | - | chr3.1:45093743-45093762 | None:intergenic | 20.0% |
| !!! | TTTTTCTAACTCATAGTTAT+GGG | - | chr3.1:45092772-45092791 | None:intergenic | 20.0% |
| ! | AAACAAACAATGAAGAAAAC+AGG | + | chr3.1:45090622-45090641 | MS.gene04154:CDS | 25.0% |
| ! | AAATGACAAAAGCAAAAGAT+AGG | + | chr3.1:45092665-45092684 | MS.gene04154:intron | 25.0% |
| ! | AATGATAATCAATGCTCTAA+AGG | + | chr3.1:45091474-45091493 | MS.gene04154:intron | 25.0% |
| ! | ATCATTGTTAACATCTACTT+TGG | - | chr3.1:45092249-45092268 | None:intergenic | 25.0% |
| ! | ATCCAAGTACTAGAATTAAA+AGG | - | chr3.1:45090390-45090409 | None:intergenic | 25.0% |
| ! | ATGCGGTAAAAATAAATGTA+TGG | + | chr3.1:45093304-45093323 | MS.gene04154:intron | 25.0% |
| ! | GGAAGATATCATCAAATTAA+TGG | + | chr3.1:45090558-45090577 | MS.gene04154:CDS | 25.0% |
| ! | GTCATTTAAAAGTGATTGAA+CGG | - | chr3.1:45093275-45093294 | None:intergenic | 25.0% |
| ! | GTGAAGTTAATTAAATAAGC+TGG | + | chr3.1:45093143-45093162 | MS.gene04154:intron | 25.0% |
| ! | TCTATCTTGAAAGTTCTATT+TGG | - | chr3.1:45090849-45090868 | None:intergenic | 25.0% |
| ! | TGCTTTATAATTGTATCAGA+AGG | - | chr3.1:45093901-45093920 | None:intergenic | 25.0% |
| ! | TGTAATTGAACATGATGTAT+TGG | - | chr3.1:45092814-45092833 | None:intergenic | 25.0% |
| ! | TTACAAACAAAATATGGGAA+AGG | - | chr3.1:45093959-45093978 | None:intergenic | 25.0% |
| ! | TTCTTCTTTGTCTTTGTATT+TGG | - | chr3.1:45093478-45093497 | None:intergenic | 25.0% |
| !! | AAAGTGTACATCAATTTTAC+TGG | - | chr3.1:45093783-45093802 | None:intergenic | 25.0% |
| !! | ATAATAGCTATGTTACTTAC+CGG | - | chr3.1:45092305-45092324 | None:intergenic | 25.0% |
| !! | ATAGTTTTCATGATTTTCAG+GGG | + | chr3.1:45091275-45091294 | MS.gene04154:intron | 25.0% |
| !! | ATTGATCAATTTTGTGTTGT+TGG | + | chr3.1:45093421-45093440 | MS.gene04154:intron | 25.0% |
| !! | CACATTTTAAATGGAACATA+TGG | - | chr3.1:45093521-45093540 | None:intergenic | 25.0% |
| !! | CATAGTTTTCATGATTTTCA+GGG | + | chr3.1:45091274-45091293 | MS.gene04154:intron | 25.0% |
| !! | GTTTTTCTAACTCATAGTTA+TGG | - | chr3.1:45092773-45092792 | None:intergenic | 25.0% |
| !! | TATCATCTAAAATGACTCTT+TGG | + | chr3.1:45094033-45094052 | MS.gene04154:intron | 25.0% |
| !! | TATCTTTGAAAGTGTATTTG+TGG | - | chr3.1:45091436-45091455 | None:intergenic | 25.0% |
| !! | TCATAGTTTTCATGATTTTC+AGG | + | chr3.1:45091273-45091292 | MS.gene04154:intron | 25.0% |
| !!! | ATATAAAGGAGTATGCTTTT+GGG | - | chr3.1:45092551-45092570 | None:intergenic | 25.0% |
| !!! | ATCCTTTTAATTCTAGTACT+TGG | + | chr3.1:45090385-45090404 | MS.gene04154:CDS | 25.0% |
| !!! | CTTATTTTCTAACCTTCTAA+GGG | - | chr3.1:45091065-45091084 | None:intergenic | 25.0% |
| !!! | TATATAAAGGAGTATGCTTT+TGG | - | chr3.1:45092552-45092571 | None:intergenic | 25.0% |
| !!! | TTTTTATGAAGTATTGTTGG+TGG | - | chr3.1:45091405-45091424 | None:intergenic | 25.0% |
| AAAAGTTTCTCCATATTGAC+CGG | - | chr3.1:45091379-45091398 | None:intergenic | 30.0% | |
| AAATGTGACCAGTCAAAATT+AGG | - | chr3.1:45092986-45093005 | None:intergenic | 30.0% | |
| AACACTAAGCATACACTTAA+TGG | - | chr3.1:45093839-45093858 | None:intergenic | 30.0% | |
| ACAAAGACAAAGAAGAAGTT+AGG | + | chr3.1:45093481-45093500 | MS.gene04154:intron | 30.0% | |
| ACATATCATCTAATCACTTG+AGG | + | chr3.1:45092347-45092366 | MS.gene04154:intron | 30.0% | |
| AGCAACAAAAACAGTAGAAA+AGG | - | chr3.1:45092101-45092120 | None:intergenic | 30.0% | |
| CAAGTGATTAGATGATATGT+AGG | - | chr3.1:45092347-45092366 | None:intergenic | 30.0% | |
| CCTTAGAAGGTTAGAAAATA+AGG | + | chr3.1:45091063-45091082 | MS.gene04154:intron | 30.0% | |
| GCAACAAAAACAGTAGAAAA+GGG | - | chr3.1:45092100-45092119 | None:intergenic | 30.0% | |
| GTTAGAAAATAAGGAGATGA+TGG | + | chr3.1:45091072-45091091 | MS.gene04154:intron | 30.0% | |
| TCTTGATCTTGATATTCTCA+TGG | - | chr3.1:45090301-45090320 | None:intergenic | 30.0% | |
| TGAAAAAAGAAAAATAGGGC+TGG | + | chr3.1:45092878-45092897 | MS.gene04154:intron | 30.0% | |
| TGATGTCATATTAAAGCTAG+TGG | + | chr3.1:45090792-45090811 | MS.gene04154:intron | 30.0% | |
| TGGATAGTTGGTTATGATAT+TGG | + | chr3.1:45090507-45090526 | MS.gene04154:CDS | 30.0% | |
| TTTGTAAACAAGGACTTCAA+AGG | + | chr3.1:45093577-45093596 | MS.gene04154:intron | 30.0% | |
| ! | AGAGTGTTTCATTACCAAAA+TGG | + | chr3.1:45090339-45090358 | MS.gene04154:CDS | 30.0% |
| ! | CAGGTATTTTATTATTGGCA+AGG | + | chr3.1:45090641-45090660 | MS.gene04154:intron | 30.0% |
| ! | TGTTTGTTAAAGTGTCCTTA+GGG | + | chr3.1:45091645-45091664 | MS.gene04154:intron | 30.0% |
| ! | TTGAGCTTTTCTTTGCAATA+TGG | + | chr3.1:45091958-45091977 | MS.gene04154:CDS | 30.0% |
| ! | TTGTTTGTTAAAGTGTCCTT+AGG | + | chr3.1:45091644-45091663 | MS.gene04154:intron | 30.0% |
| ! | TTTGAAAGTGTATTTGTGGA+AGG | - | chr3.1:45091432-45091451 | None:intergenic | 30.0% |
| ! | TTTGCAATATGGTTTGTGAT+GGG | + | chr3.1:45091969-45091988 | MS.gene04154:CDS | 30.0% |
| !! | ACCTTCATTTTTGACTAGAA+TGG | + | chr3.1:45090275-45090294 | MS.gene04154:CDS | 30.0% |
| !! | TACTCAAACCTAATTTTGAC+TGG | + | chr3.1:45092975-45092994 | MS.gene04154:intron | 30.0% |
| !! | TATAAAGGAGTATGCTTTTG+GGG | - | chr3.1:45092550-45092569 | None:intergenic | 30.0% |
| !!! | CCTTATTTTCTAACCTTCTA+AGG | - | chr3.1:45091066-45091085 | None:intergenic | 30.0% |
| AAACGCCTTGTATGTGATTA+AGG | + | chr3.1:45093187-45093206 | MS.gene04154:intron | 35.0% | |
| AAAGTTTCTCCATATTGACC+GGG | - | chr3.1:45091378-45091397 | None:intergenic | 35.0% | |
| AAATCTCACAACTTCCATCT+TGG | + | chr3.1:45092204-45092223 | MS.gene04154:CDS | 35.0% | |
| AAATGGAACATATGGGAACA+TGG | - | chr3.1:45093513-45093532 | None:intergenic | 35.0% | |
| AACGCCTTGTATGTGATTAA+GGG | + | chr3.1:45093188-45093207 | MS.gene04154:intron | 35.0% | |
| AGATTGACATTGCAACCTTA+AGG | + | chr3.1:45093860-45093879 | MS.gene04154:intron | 35.0% | |
| ATTGTTTAACATGTGCCCTA+AGG | - | chr3.1:45091688-45091707 | None:intergenic | 35.0% | |
| CAAAGTGGGGAAAAAACTTT+GGG | - | chr3.1:45093681-45093700 | None:intergenic | 35.0% | |
| CAATGTTCATGTTGTAACCA+AGG | - | chr3.1:45092154-45092173 | None:intergenic | 35.0% | |
| CATGTACAGAAAAAGTTCAC+CGG | + | chr3.1:45093721-45093740 | MS.gene04154:intron | 35.0% | |
| CTTGGTTACAACATGAACAT+TGG | + | chr3.1:45092152-45092171 | MS.gene04154:CDS | 35.0% | |
| GCCATTCTAGTCAAAAATGA+AGG | - | chr3.1:45090279-45090298 | None:intergenic | 35.0% | |
| GGAAAAGAGTAAAGGAAAGT+AGG | + | chr3.1:45091296-45091315 | MS.gene04154:intron | 35.0% | |
| TATCTTAACATGTGCCTTGA+GGG | + | chr3.1:45091800-45091819 | MS.gene04154:intron | 35.0% | |
| TATGGTTGAGATTTCACTAC+AGG | + | chr3.1:45093322-45093341 | MS.gene04154:intron | 35.0% | |
| TCCATCTTGGAGATTTAAAG+TGG | + | chr3.1:45092217-45092236 | MS.gene04154:CDS | 35.0% | |
| TCTGCATCATTCTTCTTGTT+TGG | + | chr3.1:45092054-45092073 | MS.gene04154:CDS | 35.0% | |
| TGATCTTGAGATAAGGTAGT+TGG | - | chr3.1:45090255-45090274 | None:intergenic | 35.0% | |
| TTAGAACCAAGATCAGATCT+TGG | - | chr3.1:45090366-45090385 | None:intergenic | 35.0% | |
| TTAGATAAGGCACATGGAAA+AGG | + | chr3.1:45091037-45091056 | MS.gene04154:intron | 35.0% | |
| TTGTTTAACATGTGCCCTAA+GGG | - | chr3.1:45091687-45091706 | None:intergenic | 35.0% | |
| TTTCCATGTGCCTTATCTAA+GGG | - | chr3.1:45091037-45091056 | None:intergenic | 35.0% | |
| ! | AACATGATGTATTGGTCTAG+TGG | - | chr3.1:45092806-45092825 | None:intergenic | 35.0% |
| ! | ATGCAGAGAACTTGAAGTTT+TGG | - | chr3.1:45092041-45092060 | None:intergenic | 35.0% |
| ! | CTTTGCAATATGGTTTGTGA+TGG | + | chr3.1:45091968-45091987 | MS.gene04154:CDS | 35.0% |
| ! | GAAGTCCTTGTTTACAAAGA+GGG | - | chr3.1:45093575-45093594 | None:intergenic | 35.0% |
| ! | TGAACGGTGAAGATTTTTAC+TGG | - | chr3.1:45093259-45093278 | None:intergenic | 35.0% |
| ! | TGAAGGTTGATCTTGAGATA+AGG | - | chr3.1:45090262-45090281 | None:intergenic | 35.0% |
| ! | TGAAGTCCTTGTTTACAAAG+AGG | - | chr3.1:45093576-45093595 | None:intergenic | 35.0% |
| ! | TTTTCCATGTGCCTTATCTA+AGG | - | chr3.1:45091038-45091057 | None:intergenic | 35.0% |
| !! | AACATTGGTTCCTCTTCTAA+AGG | + | chr3.1:45092167-45092186 | MS.gene04154:CDS | 35.0% |
| !! | CAATTTTGTGTTGTTGGTTG+TGG | + | chr3.1:45093427-45093446 | MS.gene04154:intron | 35.0% |
| !! | TTTGCTGTTCCAAATCAGAA+AGG | - | chr3.1:45090605-45090624 | None:intergenic | 35.0% |
| !! | TTTTCAGGGGAAAAGAGTAA+AGG | + | chr3.1:45091288-45091307 | MS.gene04154:intron | 35.0% |
| AAAGAAAAATAGGGCTGGAC+TGG | + | chr3.1:45092883-45092902 | MS.gene04154:intron | 40.0% | |
| AATGGACCAAGATCTGATCT+TGG | + | chr3.1:45090357-45090376 | MS.gene04154:CDS | 40.0% | |
| ACAGGAATGTTGCATATGCT+TGG | + | chr3.1:45093452-45093471 | MS.gene04154:intron | 40.0% | |
| ACGCCTTGTATGTGATTAAG+GGG | + | chr3.1:45093189-45093208 | MS.gene04154:intron | 40.0% | |
| ACTCACTCATGTAACCAAAG+TGG | - | chr3.1:45093696-45093715 | None:intergenic | 40.0% | |
| ATCTAATCACTTGAGGACCA+GGG | + | chr3.1:45092354-45092373 | MS.gene04154:intron | 40.0% | |
| ATTGATCGTTTGTCCTCAAC+AGG | - | chr3.1:45092947-45092966 | None:intergenic | 40.0% | |
| CAAAGAGTGAGAAACCTGTT+TGG | + | chr3.1:45090472-45090491 | MS.gene04154:CDS | 40.0% | |
| CATCCCCTTAATCACATACA+AGG | - | chr3.1:45093195-45093214 | None:intergenic | 40.0% | |
| CCAAAGTGGGGAAAAAACTT+TGG | - | chr3.1:45093682-45093701 | None:intergenic | 40.0% | |
| CCCTATAGTGAAAATCCCTT+GGG | - | chr3.1:45093234-45093253 | None:intergenic | 40.0% | |
| CGGATCTGGAAGGAAATTAT+CGG | + | chr3.1:45092378-45092397 | MS.gene04154:intron | 40.0% | |
| CTCACTCATGTAACCAAAGT+GGG | - | chr3.1:45093695-45093714 | None:intergenic | 40.0% | |
| CTTGTTAGCAATACCCCTTA+GGG | + | chr3.1:45091670-45091689 | MS.gene04154:intron | 40.0% | |
| GTATCTTAACATGTGCCTTG+AGG | + | chr3.1:45091799-45091818 | MS.gene04154:intron | 40.0% | |
| TATTGCTAACAAGTGCCCTA+AGG | - | chr3.1:45091663-45091682 | None:intergenic | 40.0% | |
| TCACTCATGTAACCAAAGTG+GGG | - | chr3.1:45093694-45093713 | None:intergenic | 40.0% | |
| TGAGATAAGGTAGTTGGTTG+AGG | - | chr3.1:45090249-45090268 | None:intergenic | 40.0% | |
| TGTTCCAAAACGTGAGTCAA+AGG | - | chr3.1:45092006-45092025 | None:intergenic | 40.0% | |
| TGTTTAACATGTGCCCTAAG+GGG | - | chr3.1:45091686-45091705 | None:intergenic | 40.0% | |
| TTGATCGTTTGTCCTCAACA+GGG | - | chr3.1:45092946-45092965 | None:intergenic | 40.0% | |
| TTGTACCATGCAGTGTATAC+AGG | + | chr3.1:45091901-45091920 | MS.gene04154:intron | 40.0% | |
| ! | ACTTGTTAGCAATACCCCTT+AGG | + | chr3.1:45091669-45091688 | MS.gene04154:intron | 40.0% |
| ! | ATCAGATGCACCTTTAGAAG+AGG | - | chr3.1:45092180-45092199 | None:intergenic | 40.0% |
| ! | CCAAGGGATTTTCACTATAG+GGG | + | chr3.1:45093232-45093251 | MS.gene04154:intron | 40.0% |
| ! | CCCAAGGGATTTTCACTATA+GGG | + | chr3.1:45093231-45093250 | MS.gene04154:intron | 40.0% |
| ! | GACCAAACATCTCATTGACT+TGG | + | chr3.1:45091352-45091371 | MS.gene04154:intron | 40.0% |
| ! | GATCAGATCTTGGTCCATTT+TGG | - | chr3.1:45090356-45090375 | None:intergenic | 40.0% |
| ! | GCCACTTTAAATCTCCAAGA+TGG | - | chr3.1:45092221-45092240 | None:intergenic | 40.0% |
| ! | GGTTTGTGATGGGAAATGTT+TGG | + | chr3.1:45091979-45091998 | MS.gene04154:CDS | 40.0% |
| ! | TCCCAAGGGATTTTCACTAT+AGG | + | chr3.1:45093230-45093249 | MS.gene04154:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr3.1:45091817-45091836 | None:intergenic | 40.0% |
| !! | TATGTTACTTACCGGCTCTT+CGG | - | chr3.1:45092297-45092316 | None:intergenic | 40.0% |
| !!! | CCAAAGTTTTTTCCCCACTT+TGG | + | chr3.1:45093679-45093698 | MS.gene04154:intron | 40.0% |
| AGAAACCTGTTTGGCCTATG+AGG | + | chr3.1:45090481-45090500 | MS.gene04154:CDS | 45.0% | |
| AGCCTCTCTTATAGCTGAAG+TGG | + | chr3.1:45091002-45091021 | MS.gene04154:intron | 45.0% | |
| AGTGAAAATCCCTTGGGACT+TGG | - | chr3.1:45093228-45093247 | None:intergenic | 45.0% | |
| ATATTCTCTCCCAAGTCCCA+AGG | + | chr3.1:45093215-45093234 | MS.gene04154:intron | 45.0% | |
| CATCTAATCACTTGAGGACC+AGG | + | chr3.1:45092353-45092372 | MS.gene04154:intron | 45.0% | |
| CCCCTATAGTGAAAATCCCT+TGG | - | chr3.1:45093235-45093254 | None:intergenic | 45.0% | |
| CTGGAAGGAAATTATCGGTG+TGG | + | chr3.1:45092383-45092402 | MS.gene04154:intron | 45.0% | |
| CTTCAGCTATAAGAGAGGCT+TGG | - | chr3.1:45091002-45091021 | None:intergenic | 45.0% | |
| GAAACCTGTTTGGCCTATGA+GGG | + | chr3.1:45090482-45090501 | MS.gene04154:CDS | 45.0% | |
| GCCTCTCTTATAGCTGAAGT+GGG | + | chr3.1:45091003-45091022 | MS.gene04154:intron | 45.0% | |
| GGCCAAGTCAATGAGATGTT+TGG | - | chr3.1:45091357-45091376 | None:intergenic | 45.0% | |
| GTGAAAATCCCTTGGGACTT+GGG | - | chr3.1:45093227-45093246 | None:intergenic | 45.0% | |
| TATTCTCTCCCAAGTCCCAA+GGG | + | chr3.1:45093216-45093235 | MS.gene04154:intron | 45.0% | |
| TCTAATCACTTGAGGACCAG+GGG | + | chr3.1:45092355-45092374 | MS.gene04154:intron | 45.0% | |
| TGATCGTTTGTCCTCAACAG+GGG | - | chr3.1:45092945-45092964 | None:intergenic | 45.0% | |
| TGCTGCCCTCTTTGTAAACA+AGG | + | chr3.1:45093567-45093586 | MS.gene04154:intron | 45.0% | |
| ! | TGCTCTTGGCCTTTCTGATT+TGG | + | chr3.1:45090593-45090612 | MS.gene04154:CDS | 45.0% |
| ! | TGGTCCTTTGACTCACGTTT+TGG | + | chr3.1:45091999-45092018 | MS.gene04154:CDS | 45.0% |
| !! | AACATCTCATTGACTTGGCC+CGG | + | chr3.1:45091357-45091376 | MS.gene04154:intron | 45.0% |
| !! | ATGGAAAAGGTGCCCTTAGA+AGG | + | chr3.1:45091050-45091069 | MS.gene04154:intron | 45.0% |
| !!! | AAATAAATATATTTTTTTTG+AGG | + | chr3.1:45091139-45091158 | MS.gene04154:intron | 5.0% |
| !!! | AATAAATATATTTTTTTTGA+GGG | + | chr3.1:45091140-45091159 | MS.gene04154:intron | 5.0% |
| AAGATTGATCGCCGAAGAGC+CGG | + | chr3.1:45092283-45092302 | MS.gene04154:CDS | 50.0% | |
| CAGCTATAAGAGAGGCTTGG+TGG | - | chr3.1:45090999-45091018 | None:intergenic | 50.0% | |
| CCAACTATCCACACCCTCAT+AGG | - | chr3.1:45090498-45090517 | None:intergenic | 50.0% | |
| CCACTCATTAGCACACTCCT+TGG | + | chr3.1:45092134-45092153 | MS.gene04154:CDS | 50.0% | |
| CTTATAGCTGAAGTGGGCCT+AGG | + | chr3.1:45091009-45091028 | MS.gene04154:intron | 50.0% | |
| GCCCACTTCAGCTATAAGAG+AGG | - | chr3.1:45091007-45091026 | None:intergenic | 50.0% | |
| GGGACTAATGCAGATGCTCT+TGG | + | chr3.1:45090579-45090598 | MS.gene04154:CDS | 50.0% | |
| GTGCCCTTAGATAAGGCACA+TGG | + | chr3.1:45091031-45091050 | MS.gene04154:intron | 50.0% | |
| GTGCTCCTGTATACACTGCA+TGG | - | chr3.1:45091909-45091928 | None:intergenic | 50.0% | |
| ! | CCAAGGAGTGTGCTAATGAG+TGG | - | chr3.1:45092137-45092156 | None:intergenic | 50.0% |
| ! | CCTATGAGGGTGTGGATAGT+TGG | + | chr3.1:45090495-45090514 | MS.gene04154:CDS | 50.0% |
| ! | GTGTTGTTGGTTGTGGTGAC+AGG | + | chr3.1:45093434-45093453 | MS.gene04154:intron | 50.0% |
| !! | AAAATAGGGCTGGACTGGTG+TGG | + | chr3.1:45092888-45092907 | MS.gene04154:intron | 50.0% |
| !! | TGCCTTATCTAAGGGCACCT+AGG | - | chr3.1:45091029-45091048 | None:intergenic | 50.0% |
| !! | TTGACTTGGCCCGGTCAATA+TGG | + | chr3.1:45091366-45091385 | MS.gene04154:intron | 50.0% |
| AATCACTTGAGGACCAGGGG+CGG | + | chr3.1:45092358-45092377 | MS.gene04154:intron | 55.0% | |
| CACACCCTCATAGGCCAAAC+AGG | - | chr3.1:45090489-45090508 | None:intergenic | 55.0% | |
| CTGTTTGGCCTATGAGGGTG+TGG | + | chr3.1:45090487-45090506 | MS.gene04154:CDS | 55.0% | |
| GGCCTAGGTGCCCTTAGATA+AGG | + | chr3.1:45091024-45091043 | MS.gene04154:intron | 55.0% | |
| TCGTTTGTCCTCAACAGGGG+CGG | - | chr3.1:45092942-45092961 | None:intergenic | 55.0% | |
| AACAGGGGCGGACCTGCTTT+AGG | - | chr3.1:45092930-45092949 | None:intergenic | 60.0% | |
| AGCCACAGCCAGCCTAAAGC+AGG | + | chr3.1:45092915-45092934 | MS.gene04154:intron | 60.0% | |
| TTTCCTTCCAGATCCGCCCC+TGG | - | chr3.1:45092374-45092393 | None:intergenic | 60.0% | |
| ! | GACCTGCTTTAGGCTGGCTG+TGG | - | chr3.1:45092920-45092939 | None:intergenic | 60.0% |
| AAGCAGGTCCGCCCCTGTTG+AGG | + | chr3.1:45092931-45092950 | MS.gene04154:intron | 65.0% | |
| TTGAGGACCAGGGGCGGATC+TGG | + | chr3.1:45092364-45092383 | MS.gene04154:intron | 65.0% | |
| GGACCAGGGGCGGATCTGGA+AGG | + | chr3.1:45092368-45092387 | MS.gene04154:intron | 70.0% | |
| ! | GGGGCGGACCTGCTTTAGGC+TGG | - | chr3.1:45092926-45092945 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 45090243 | 45094159 | 45090243 | ID=MS.gene04154 |
| chr3.1 | mRNA | 45090243 | 45094159 | 45090243 | ID=MS.gene04154.t1;Parent=MS.gene04154 |
| chr3.1 | exon | 45090243 | 45090643 | 45090243 | ID=MS.gene04154.t1.exon1;Parent=MS.gene04154.t1 |
| chr3.1 | CDS | 45090243 | 45090643 | 45090243 | ID=cds.MS.gene04154.t1;Parent=MS.gene04154.t1 |
| chr3.1 | exon | 45091914 | 45092304 | 45091914 | ID=MS.gene04154.t1.exon2;Parent=MS.gene04154.t1 |
| chr3.1 | CDS | 45091914 | 45092304 | 45091914 | ID=cds.MS.gene04154.t1;Parent=MS.gene04154.t1 |
| chr3.1 | exon | 45094136 | 45094159 | 45094136 | ID=MS.gene04154.t1.exon3;Parent=MS.gene04154.t1 |
| chr3.1 | CDS | 45094136 | 45094159 | 45094136 | ID=cds.MS.gene04154.t1;Parent=MS.gene04154.t1 |
| Gene Sequence |
| Protein sequence |
