Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04341.t1 | RHN67442.1 | 98.1 | 319 | 6 | 0 | 1 | 319 | 15 | 333 | 5.50E-182 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04341.t1 | Q93Z92 | 31.6 | 266 | 136 | 8 | 81 | 314 | 128 | 379 | 1.1e-26 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04341.t1 | A0A396IPD2 | 98.1 | 319 | 6 | 0 | 1 | 319 | 15 | 333 | 4.0e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04341 | MS.gene026525 | PPI |
| MS.gene04341 | MS.gene067859 | PPI |
| MS.gene08162 | MS.gene04341 | PPI |
| MS.gene04341 | MS.gene41778 | PPI |
| MS.gene04341 | MS.gene83063 | PPI |
| MS.gene04341 | MS.gene042467 | PPI |
| MS.gene98977 | MS.gene04341 | PPI |
| MS.gene04341 | MS.gene25181 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04341.t1 | MTR_5g096410 | 78.146 | 302 | 65 | 1 | 19 | 319 | 39 | 340 | 4.64e-161 | 452 |
| MS.gene04341.t1 | MTR_5g096410 | 77.152 | 302 | 65 | 2 | 19 | 319 | 39 | 337 | 2.31e-156 | 441 |
| MS.gene04341.t1 | MTR_5g096410 | 75.166 | 302 | 62 | 2 | 19 | 319 | 39 | 328 | 4.72e-150 | 424 |
| MS.gene04341.t1 | MTR_1g011380 | 34.884 | 301 | 153 | 7 | 55 | 314 | 84 | 382 | 2.86e-54 | 182 |
| MS.gene04341.t1 | MTR_3g107995 | 35.430 | 302 | 153 | 7 | 56 | 317 | 62 | 361 | 5.33e-54 | 181 |
| MS.gene04341.t1 | MTR_8g105330 | 28.723 | 282 | 170 | 8 | 60 | 314 | 49 | 326 | 1.06e-35 | 132 |
| MS.gene04341.t1 | MTR_4g102870 | 28.873 | 284 | 158 | 6 | 74 | 319 | 85 | 362 | 8.17e-33 | 125 |
| MS.gene04341.t1 | MTR_7g088500 | 30.435 | 253 | 134 | 9 | 86 | 319 | 63 | 292 | 1.13e-31 | 120 |
| MS.gene04341.t1 | MTR_1g032440 | 28.519 | 270 | 165 | 6 | 74 | 319 | 80 | 345 | 2.01e-31 | 120 |
| MS.gene04341.t1 | MTR_5g010720 | 30.545 | 275 | 147 | 8 | 80 | 314 | 103 | 373 | 1.93e-29 | 116 |
| MS.gene04341.t1 | MTR_7g076010 | 26.996 | 263 | 147 | 7 | 86 | 314 | 102 | 353 | 1.65e-26 | 107 |
| MS.gene04341.t1 | MTR_7g088560 | 32.515 | 163 | 87 | 6 | 178 | 319 | 23 | 183 | 5.46e-18 | 80.9 |
| MS.gene04341.t1 | MTR_7g088570 | 35.659 | 129 | 66 | 4 | 205 | 318 | 162 | 288 | 1.12e-15 | 76.6 |
| MS.gene04341.t1 | MTR_1g032440 | 25.654 | 191 | 127 | 4 | 74 | 253 | 80 | 266 | 6.96e-13 | 68.6 |
| MS.gene04341.t1 | MTR_5g082940 | 40.217 | 92 | 42 | 3 | 228 | 318 | 70 | 149 | 3.79e-12 | 64.3 |
| MS.gene04341.t1 | MTR_3g071300 | 32.203 | 118 | 77 | 2 | 204 | 318 | 35 | 152 | 6.68e-12 | 63.5 |
| MS.gene04341.t1 | MTR_4g116460 | 42.424 | 66 | 30 | 2 | 250 | 314 | 468 | 526 | 9.22e-12 | 66.2 |
| MS.gene04341.t1 | MTR_4g116460 | 42.424 | 66 | 30 | 2 | 250 | 314 | 425 | 483 | 9.33e-12 | 65.9 |
| MS.gene04341.t1 | MTR_5g022920 | 35.556 | 90 | 45 | 3 | 229 | 317 | 157 | 234 | 2.96e-11 | 62.8 |
| MS.gene04341.t1 | MTR_3g110190 | 30.282 | 142 | 74 | 5 | 182 | 314 | 9 | 134 | 5.29e-11 | 63.2 |
| MS.gene04341.t1 | MTR_1g114240 | 31.915 | 94 | 51 | 1 | 220 | 313 | 248 | 328 | 9.50e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04341.t1 | AT5G55970 | 69.000 | 300 | 88 | 2 | 20 | 319 | 49 | 343 | 1.67e-149 | 424 |
| MS.gene04341.t1 | AT5G55970 | 69.000 | 300 | 88 | 2 | 20 | 319 | 49 | 343 | 1.67e-149 | 424 |
| MS.gene04341.t1 | AT4G26580 | 68.687 | 297 | 84 | 3 | 21 | 317 | 46 | 333 | 2.11e-144 | 410 |
| MS.gene04341.t1 | AT4G26580 | 68.687 | 297 | 84 | 3 | 21 | 317 | 46 | 333 | 2.11e-144 | 410 |
| MS.gene04341.t1 | AT5G55970 | 71.179 | 229 | 64 | 1 | 20 | 248 | 49 | 275 | 9.87e-116 | 337 |
| MS.gene04341.t1 | AT1G80400 | 31.429 | 350 | 187 | 9 | 6 | 314 | 59 | 396 | 1.01e-56 | 189 |
| MS.gene04341.t1 | AT4G32600 | 35.333 | 300 | 150 | 7 | 57 | 314 | 107 | 404 | 1.37e-55 | 187 |
| MS.gene04341.t1 | AT4G32600 | 35.333 | 300 | 150 | 7 | 57 | 314 | 107 | 404 | 1.37e-55 | 187 |
| MS.gene04341.t1 | AT3G61180 | 28.889 | 270 | 148 | 7 | 81 | 314 | 103 | 364 | 4.66e-34 | 128 |
| MS.gene04341.t1 | AT2G01735 | 28.625 | 269 | 165 | 7 | 74 | 319 | 89 | 353 | 6.13e-33 | 125 |
| MS.gene04341.t1 | AT1G68070 | 29.537 | 281 | 165 | 9 | 60 | 314 | 60 | 333 | 1.88e-32 | 123 |
| MS.gene04341.t1 | AT4G11680 | 32.824 | 262 | 140 | 8 | 80 | 314 | 127 | 379 | 2.12e-32 | 124 |
| MS.gene04341.t1 | AT1G12760 | 27.090 | 299 | 154 | 10 | 74 | 319 | 41 | 328 | 9.25e-27 | 108 |
| MS.gene04341.t1 | AT1G12760 | 27.551 | 294 | 149 | 10 | 74 | 314 | 112 | 394 | 1.02e-26 | 108 |
| MS.gene04341.t1 | AT4G11680 | 29.897 | 291 | 139 | 9 | 80 | 314 | 127 | 408 | 1.72e-26 | 108 |
| MS.gene04341.t1 | AT1G63170 | 30.249 | 281 | 136 | 10 | 84 | 314 | 96 | 366 | 4.79e-26 | 107 |
| MS.gene04341.t1 | AT3G19910 | 34.483 | 87 | 44 | 1 | 227 | 313 | 255 | 328 | 2.84e-12 | 67.0 |
| MS.gene04341.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 41 | 219 | 4.09e-12 | 66.2 |
| MS.gene04341.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 41 | 219 | 4.09e-12 | 66.2 |
| MS.gene04341.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 41 | 219 | 4.09e-12 | 66.2 |
| MS.gene04341.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 82 | 260 | 4.27e-12 | 66.6 |
| MS.gene04341.t1 | AT3G47990 | 28.877 | 187 | 94 | 7 | 159 | 314 | 98 | 276 | 4.32e-12 | 66.6 |
| MS.gene04341.t1 | AT2G35910 | 58.140 | 43 | 17 | 1 | 273 | 314 | 147 | 189 | 2.41e-11 | 62.8 |
| MS.gene04341.t1 | AT5G66070 | 37.500 | 88 | 38 | 3 | 231 | 317 | 150 | 221 | 3.89e-11 | 62.4 |
| MS.gene04341.t1 | AT5G66070 | 37.500 | 88 | 38 | 3 | 231 | 317 | 150 | 221 | 3.89e-11 | 62.4 |
| MS.gene04341.t1 | AT5G66070 | 37.500 | 88 | 38 | 3 | 231 | 317 | 174 | 245 | 5.15e-11 | 62.4 |
| MS.gene04341.t1 | AT5G43420 | 34.118 | 85 | 55 | 1 | 231 | 314 | 96 | 180 | 6.89e-11 | 63.2 |
Find 58 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGTTGTTACTTTA+TGG | 0.063293 | 3.4:+56428344 | MS.gene04341:CDS |
| TTCTTCTTTGTCTTTGTATT+TGG | 0.132140 | 3.4:-56431031 | None:intergenic |
| GATCAGATCTTGGTCCATTT+TGG | 0.217801 | 3.4:-56428160 | None:intergenic |
| ATCCAAGTACTAGAATTAAA+AGG | 0.225472 | 3.4:-56428194 | None:intergenic |
| TGCTCTTGGCCTTTCTGATT+TGG | 0.226775 | 3.4:+56428400 | MS.gene04341:CDS |
| GGAAGATATCATCAAATTAA+TGG | 0.236379 | 3.4:+56428365 | MS.gene04341:CDS |
| TCTGCATCATTCTTCTTGTT+TGG | 0.260239 | 3.4:+56430194 | MS.gene04341:CDS |
| ATGCAGAGAACTTGAAGTTT+TGG | 0.276264 | 3.4:-56430178 | None:intergenic |
| TGGATAGTTGGTTATGATAT+TGG | 0.288164 | 3.4:+56428314 | MS.gene04341:CDS |
| CATCAAATTAATGGGACTAA+TGG | 0.304532 | 3.4:+56428374 | MS.gene04341:CDS |
| TGGTCCTTTGACTCACGTTT+TGG | 0.318994 | 3.4:+56430139 | MS.gene04341:CDS |
| AGAGTGTTTCATTACCAAAA+TGG | 0.321656 | 3.4:+56428146 | MS.gene04341:CDS |
| CCTATGAGGGTTTGGATAGT+TGG | 0.350667 | 3.4:+56428302 | MS.gene04341:CDS |
| CTGTTTGGCCTATGAGGGTT+TGG | 0.381036 | 3.4:+56428294 | MS.gene04341:CDS |
| ATTTAAAATGTGTTGATCAA+TGG | 0.389698 | 3.4:+56431085 | MS.gene04341:CDS |
| TTGTACCATGCAGTGTATAC+AGG | 0.398135 | 3.4:+56430041 | MS.gene04341:intron |
| GAAGATATCATCAAATTAAT+GGG | 0.398923 | 3.4:+56428366 | MS.gene04341:CDS |
| CAAAGAATGAGAAACCTGTT+TGG | 0.407405 | 3.4:+56428279 | MS.gene04341:CDS |
| ATCATTGTTAACATCTACTT+TGG | 0.411799 | 3.4:-56430386 | None:intergenic |
| AACAAGCACAACATTTACTT+TGG | 0.415674 | 3.4:+56428250 | MS.gene04341:CDS |
| CAAACCCTCATAGGCCAAAC+AGG | 0.416165 | 3.4:-56428293 | None:intergenic |
| CCAACTATCCAAACCCTCAT+AGG | 0.421618 | 3.4:-56428302 | None:intergenic |
| TATGTTACTTACCGGCTCTT+CGG | 0.429112 | 3.4:-56430434 | None:intergenic |
| TGATCTTGAGATAAGGTAGT+TGG | 0.435282 | 3.4:-56428059 | None:intergenic |
| AAATCTCACAACTTCCATCT+TGG | 0.447583 | 3.4:+56430344 | MS.gene04341:CDS |
| TAAGGTAGTTGGTTGAGGTA+TGG | 0.448935 | 3.4:-56428048 | None:intergenic |
| AGAAACCTGTTTGGCCTATG+AGG | 0.451178 | 3.4:+56428288 | MS.gene04341:CDS |
| AAACAAACAATGAAGAAAAC+AGG | 0.451322 | 3.4:+56428429 | MS.gene04341:CDS |
| AAGATTGATCGCCGAAGAGC+CGG | 0.485021 | 3.4:+56430423 | MS.gene04341:CDS |
| ACAAAGACAAAGAAGAAGTT+AGG | 0.485178 | 3.4:+56431037 | MS.gene04341:CDS |
| TCCAAGTACTAGAATTAAAA+GGG | 0.487171 | 3.4:-56428193 | None:intergenic |
| TGAGATAAGGTAGTTGGTTG+AGG | 0.490004 | 3.4:-56428053 | None:intergenic |
| AATGGACCAAGATCTGATCT+TGG | 0.496984 | 3.4:+56428164 | MS.gene04341:CDS |
| AACATTGGCTCCTCTTCTAA+AGG | 0.508992 | 3.4:+56430307 | MS.gene04341:CDS |
| CTTTGCAATATGGTTTGTGA+TGG | 0.515501 | 3.4:+56430108 | MS.gene04341:CDS |
| TTTGTTGTTCCAAATCAGAA+AGG | 0.520171 | 3.4:-56428409 | None:intergenic |
| GGGACTAATGGAGATGCTCT+TGG | 0.520597 | 3.4:+56428386 | MS.gene04341:CDS |
| TCCATCTTGGAGATTTAAAG+TGG | 0.525434 | 3.4:+56430357 | MS.gene04341:CDS |
| TCTTGATCTTGATATTCTCA+TGG | 0.531696 | 3.4:-56428105 | None:intergenic |
| CCACTCATTAGCACACTCCT+TGG | 0.535217 | 3.4:+56430274 | MS.gene04341:CDS |
| TTTGTAAACAAGGACTTCAA+AGG | 0.538107 | 3.4:+56431133 | MS.gene04341:CDS |
| GCCATTCTAGTAAAATATGA+AGG | 0.541273 | 3.4:-56428083 | None:intergenic |
| GGTTTGTGATGGGAAATGTT+TGG | 0.542130 | 3.4:+56430119 | MS.gene04341:CDS |
| GCCACTTTAAATCTCCAAGA+TGG | 0.543549 | 3.4:-56430358 | None:intergenic |
| GAAACCTGTTTGGCCTATGA+GGG | 0.546725 | 3.4:+56428289 | MS.gene04341:CDS |
| TTAGAACCAAGATCAGATCT+TGG | 0.550843 | 3.4:-56428170 | None:intergenic |
| TGTTCCAAAACGTGAGTCAA+AGG | 0.552816 | 3.4:-56430143 | None:intergenic |
| CTTGGTTACAACATGAACAT+TGG | 0.562475 | 3.4:+56430292 | MS.gene04341:CDS |
| TGCTGCCCTCTTTGTAAACA+AGG | 0.563075 | 3.4:+56431123 | MS.gene04341:CDS |
| ACAGGAATGTTGCATATGCT+TGG | 0.563922 | 3.4:+56431008 | MS.gene04341:intron |
| GAAGTCCTTGTTTACAAAGA+GGG | 0.565092 | 3.4:-56431128 | None:intergenic |
| AAATGGAACATATGGGAACA+TGG | 0.578921 | 3.4:-56431066 | None:intergenic |
| ATCAGATGCACCTTTAGAAG+AGG | 0.582135 | 3.4:-56430317 | None:intergenic |
| TGAAGTCCTTGTTTACAAAG+AGG | 0.583258 | 3.4:-56431129 | None:intergenic |
| TGAAGGTTGATCTTGAGATA+AGG | 0.589208 | 3.4:-56428066 | None:intergenic |
| TTTGCAATATGGTTTGTGAT+GGG | 0.603007 | 3.4:+56430109 | MS.gene04341:CDS |
| CAATGTTCATGTTGTAACCA+AGG | 0.631595 | 3.4:-56430291 | None:intergenic |
| CCAAGGAGTGTGCTAATGAG+TGG | 0.648597 | 3.4:-56430274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGAAAATTTACTTTATA+AGG | - | chr3.4:56430614-56430633 | None:intergenic | 10.0% |
| !!! | AAAGATATTTAGTTTTTTAA+CGG | + | chr3.4:56429589-56429608 | MS.gene04341:intron | 10.0% |
| !!! | AAATATAATTTTTTTATTGG+TGG | + | chr3.4:56429129-56429148 | MS.gene04341:intron | 10.0% |
| !!! | AATATAATTTTTTTATTGGT+GGG | + | chr3.4:56429130-56429149 | MS.gene04341:intron | 10.0% |
| !!! | TTAAAGTATAAATTTTATCT+GGG | + | chr3.4:56429651-56429670 | MS.gene04341:intron | 10.0% |
| !!! | TTTAAAGTATAAATTTTATC+TGG | + | chr3.4:56429650-56429669 | MS.gene04341:intron | 10.0% |
| !! | ATAAAAAAATCACTTAATAG+TGG | - | chr3.4:56430914-56430933 | None:intergenic | 15.0% |
| !! | CTATGATAACTTTATATTTA+AGG | - | chr3.4:56429225-56429244 | None:intergenic | 15.0% |
| !! | TAAAAAAATCACTTAATAGT+GGG | - | chr3.4:56430913-56430932 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAATGTCAATT+AGG | - | chr3.4:56429068-56429087 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTTTATTGGTG+GGG | + | chr3.4:56429131-56429150 | MS.gene04341:intron | 15.0% |
| !!! | ATATTTTTATGAAGTATTGT+TGG | - | chr3.4:56429548-56429567 | None:intergenic | 15.0% |
| !!! | GGGAAATATAATTTTTTTAT+TGG | + | chr3.4:56429126-56429145 | MS.gene04341:intron | 15.0% |
| !!! | TATCAGAAACAATTTTAAAT+AGG | - | chr3.4:56429982-56430001 | None:intergenic | 15.0% |
| !! | AACATACAACAAAACAAAAT+TGG | + | chr3.4:56429286-56429305 | MS.gene04341:intron | 20.0% |
| !! | ACATACAACAAAACAAAATT+GGG | + | chr3.4:56429287-56429306 | MS.gene04341:intron | 20.0% |
| !! | ATCTACACATACATATTATT+AGG | - | chr3.4:56430959-56430978 | None:intergenic | 20.0% |
| !! | GAAGATATCATCAAATTAAT+GGG | + | chr3.4:56428366-56428385 | MS.gene04341:CDS | 20.0% |
| !! | GATACCATTAATTAATTGTT+AGG | + | chr3.4:56428603-56428622 | MS.gene04341:intron | 20.0% |
| !!! | ACATTTTAAATGGAACATAT+GGG | - | chr3.4:56431076-56431095 | None:intergenic | 20.0% |
| !!! | ATTGATCAACACATTTTAAA+TGG | - | chr3.4:56431086-56431105 | None:intergenic | 20.0% |
| !!! | ATTTAAAATGTGTTGATCAA+TGG | + | chr3.4:56431085-56431104 | MS.gene04341:CDS | 20.0% |
| !!! | CTTAATTTGTTGTTACTTTA+TGG | + | chr3.4:56428344-56428363 | MS.gene04341:CDS | 20.0% |
| !!! | TAAATGACTTTTATCTTATG+CGG | + | chr3.4:56430843-56430862 | MS.gene04341:intron | 20.0% |
| ! | AAACAAACAATGAAGAAAAC+AGG | + | chr3.4:56428429-56428448 | MS.gene04341:CDS | 25.0% |
| ! | AATGATAATCAATGCTCTAA+AGG | + | chr3.4:56429614-56429633 | MS.gene04341:intron | 25.0% |
| ! | AGCAACAAAAATAGTAGAAA+AGG | - | chr3.4:56430241-56430260 | None:intergenic | 25.0% |
| ! | ATCATTGTTAACATCTACTT+TGG | - | chr3.4:56430389-56430408 | None:intergenic | 25.0% |
| ! | ATCCAAGTACTAGAATTAAA+AGG | - | chr3.4:56428197-56428216 | None:intergenic | 25.0% |
| ! | GCAACAAAAATAGTAGAAAA+GGG | - | chr3.4:56430240-56430259 | None:intergenic | 25.0% |
| ! | GGAAGATATCATCAAATTAA+TGG | + | chr3.4:56428365-56428384 | MS.gene04341:CDS | 25.0% |
| ! | GTATAAGTGACATTAAATCT+GGG | + | chr3.4:56428925-56428944 | MS.gene04341:intron | 25.0% |
| ! | GTCATTTAAAAGTGATTGAA+CGG | - | chr3.4:56430831-56430850 | None:intergenic | 25.0% |
| ! | GTGAAGTTAATTAAATAAGC+TGG | + | chr3.4:56430699-56430718 | MS.gene04341:intron | 25.0% |
| ! | TCCAAGTACTAGAATTAAAA+GGG | - | chr3.4:56428196-56428215 | None:intergenic | 25.0% |
| ! | TCTATCTTGAAAGTTCTATT+TGG | - | chr3.4:56428629-56428648 | None:intergenic | 25.0% |
| ! | TGTATAAGTGACATTAAATC+TGG | + | chr3.4:56428924-56428943 | MS.gene04341:intron | 25.0% |
| ! | TTCTTCTTTGTCTTTGTATT+TGG | - | chr3.4:56431034-56431053 | None:intergenic | 25.0% |
| ! | TTGGCCTAACAATTAATTAA+TGG | - | chr3.4:56428610-56428629 | None:intergenic | 25.0% |
| !! | ACCTTCATATTTTACTAGAA+TGG | + | chr3.4:56428082-56428101 | MS.gene04341:CDS | 25.0% |
| !! | ATAATAGCTATGTTACTTAC+CGG | - | chr3.4:56430445-56430464 | None:intergenic | 25.0% |
| !! | ATAGTTTTCATGATTTTCAG+GGG | + | chr3.4:56429241-56429260 | MS.gene04341:intron | 25.0% |
| !! | ATTGATCAATTTTGTGTTGT+TGG | + | chr3.4:56430977-56430996 | MS.gene04341:intron | 25.0% |
| !! | CACATTTTAAATGGAACATA+TGG | - | chr3.4:56431077-56431096 | None:intergenic | 25.0% |
| !! | CATAGTTTTCATGATTTTCA+GGG | + | chr3.4:56429240-56429259 | MS.gene04341:intron | 25.0% |
| !! | TATCTTTGAAAGTGTATTTG+TGG | - | chr3.4:56429576-56429595 | None:intergenic | 25.0% |
| !! | TCATAGTTTTCATGATTTTC+AGG | + | chr3.4:56429239-56429258 | MS.gene04341:intron | 25.0% |
| !!! | CTTATTTTCTAACCTTCTAA+GGG | - | chr3.4:56429031-56429050 | None:intergenic | 25.0% |
| !!! | TTTTTATGAAGTATTGTTGG+TGG | - | chr3.4:56429545-56429564 | None:intergenic | 25.0% |
| AAATGTGACCAGTCAAAATT+AGG | - | chr3.4:56430542-56430561 | None:intergenic | 30.0% | |
| AACAAGCACAACATTTACTT+TGG | + | chr3.4:56428250-56428269 | MS.gene04341:CDS | 30.0% | |
| ACAAAGACAAAGAAGAAGTT+AGG | + | chr3.4:56431037-56431056 | MS.gene04341:CDS | 30.0% | |
| ACATATCATCTAATCACTTG+AGG | + | chr3.4:56430487-56430506 | MS.gene04341:intron | 30.0% | |
| ATGCGGTAAAGATAAATGTA+TGG | + | chr3.4:56430860-56430879 | MS.gene04341:intron | 30.0% | |
| CAAGTGATTAGATGATATGT+AGG | - | chr3.4:56430487-56430506 | None:intergenic | 30.0% | |
| CATCAAATTAATGGGACTAA+TGG | + | chr3.4:56428374-56428393 | MS.gene04341:CDS | 30.0% | |
| CCTTAGAAGGTTAGAAAATA+AGG | + | chr3.4:56429029-56429048 | MS.gene04341:intron | 30.0% | |
| GCCATTCTAGTAAAATATGA+AGG | - | chr3.4:56428086-56428105 | None:intergenic | 30.0% | |
| GTTAGAAAATAAGGAGATGA+TGG | + | chr3.4:56429038-56429057 | MS.gene04341:intron | 30.0% | |
| TCTTGATCTTGATATTCTCA+TGG | - | chr3.4:56428108-56428127 | None:intergenic | 30.0% | |
| TGATGTCATATTAAAGCTAG+TGG | + | chr3.4:56428572-56428591 | MS.gene04341:intron | 30.0% | |
| TGGATAGTTGGTTATGATAT+TGG | + | chr3.4:56428314-56428333 | MS.gene04341:CDS | 30.0% | |
| TTTGTAAACAAGGACTTCAA+AGG | + | chr3.4:56431133-56431152 | MS.gene04341:CDS | 30.0% | |
| ! | AGAGTGTTTCATTACCAAAA+TGG | + | chr3.4:56428146-56428165 | MS.gene04341:CDS | 30.0% |
| ! | TGTTTGTTAAAGTGTCCTAA+GGG | + | chr3.4:56429785-56429804 | MS.gene04341:intron | 30.0% |
| ! | TTGAGCTTTTCTTTGCAATA+TGG | + | chr3.4:56430098-56430117 | MS.gene04341:CDS | 30.0% |
| ! | TTGTTTGTTAAAGTGTCCTA+AGG | + | chr3.4:56429784-56429803 | MS.gene04341:intron | 30.0% |
| ! | TTTGAAAGTGTATTTGTGGA+AGG | - | chr3.4:56429572-56429591 | None:intergenic | 30.0% |
| ! | TTTGCAATATGGTTTGTGAT+GGG | + | chr3.4:56430109-56430128 | MS.gene04341:CDS | 30.0% |
| !! | ACCCTTTTAATTCTAGTACT+TGG | + | chr3.4:56428192-56428211 | MS.gene04341:CDS | 30.0% |
| !! | TACTCAAACCTAATTTTGAC+TGG | + | chr3.4:56430531-56430550 | MS.gene04341:intron | 30.0% |
| !! | TTTGTTGTTCCAAATCAGAA+AGG | - | chr3.4:56428412-56428431 | None:intergenic | 30.0% |
| !!! | CCTTATTTTCTAACCTTCTA+AGG | - | chr3.4:56429032-56429051 | None:intergenic | 30.0% |
| AAACGCCTTGTATGTGATTA+AGG | + | chr3.4:56430743-56430762 | MS.gene04341:intron | 35.0% | |
| AAATCTCACAACTTCCATCT+TGG | + | chr3.4:56430344-56430363 | MS.gene04341:CDS | 35.0% | |
| AAATGGAACATATGGGAACA+TGG | - | chr3.4:56431069-56431088 | None:intergenic | 35.0% | |
| AACGCCTTGTATGTGATTAA+GGG | + | chr3.4:56430744-56430763 | MS.gene04341:intron | 35.0% | |
| AAGTATTTCCCCATATTGAC+CGG | - | chr3.4:56429345-56429364 | None:intergenic | 35.0% | |
| ATTAAATATGGGCCACACAA+AGG | + | chr3.4:56428876-56428895 | MS.gene04341:intron | 35.0% | |
| ATTGCCATTGTCATTACATC+TGG | - | chr3.4:56429439-56429458 | None:intergenic | 35.0% | |
| ATTGTTTAACATGTGCCCTA+AGG | - | chr3.4:56429828-56429847 | None:intergenic | 35.0% | |
| CAAAGAATGAGAAACCTGTT+TGG | + | chr3.4:56428279-56428298 | MS.gene04341:CDS | 35.0% | |
| CAATGTTCATGTTGTAACCA+AGG | - | chr3.4:56430294-56430313 | None:intergenic | 35.0% | |
| CTTGGTTACAACATGAACAT+TGG | + | chr3.4:56430292-56430311 | MS.gene04341:CDS | 35.0% | |
| CTTGTGTGACATTAATGTCA+CGG | + | chr3.4:56429362-56429381 | MS.gene04341:intron | 35.0% | |
| GAAAACAGGTATTTCACTCT+TGG | + | chr3.4:56428443-56428462 | MS.gene04341:intron | 35.0% | |
| GAAAAGGTGGGATAATACTT+TGG | + | chr3.4:56428833-56428852 | MS.gene04341:intron | 35.0% | |
| GGAAAAGAGTAAAGGAAAGT+AGG | + | chr3.4:56429262-56429281 | MS.gene04341:intron | 35.0% | |
| GTCACCGTGACATTAAATAT+GGG | + | chr3.4:56428865-56428884 | MS.gene04341:intron | 35.0% | |
| GTCACTTATACAACACATCT+GGG | - | chr3.4:56428916-56428935 | None:intergenic | 35.0% | |
| GTGTCTCAGATTTAATGTCA+CGG | + | chr3.4:56428969-56428988 | MS.gene04341:intron | 35.0% | |
| TATCTTAACATGTGCCTTGA+GGG | + | chr3.4:56429940-56429959 | MS.gene04341:intron | 35.0% | |
| TCCATCTTGGAGATTTAAAG+TGG | + | chr3.4:56430357-56430376 | MS.gene04341:CDS | 35.0% | |
| TCTGCATCATTCTTCTTGTT+TGG | + | chr3.4:56430194-56430213 | MS.gene04341:CDS | 35.0% | |
| TGATCTTGAGATAAGGTAGT+TGG | - | chr3.4:56428062-56428081 | None:intergenic | 35.0% | |
| TGTCACCGTGACATTAAATA+TGG | + | chr3.4:56428864-56428883 | MS.gene04341:intron | 35.0% | |
| TTAAATATGGGCCACACAAA+GGG | + | chr3.4:56428877-56428896 | MS.gene04341:intron | 35.0% | |
| TTAGAACCAAGATCAGATCT+TGG | - | chr3.4:56428173-56428192 | None:intergenic | 35.0% | |
| TTAGATAAGGCACATGGAAA+AGG | + | chr3.4:56428817-56428836 | MS.gene04341:intron | 35.0% | |
| TTCTCCATGTACCATATTGA+CGG | - | chr3.4:56429513-56429532 | None:intergenic | 35.0% | |
| TTGCCATTGTCATTACATCT+GGG | - | chr3.4:56429438-56429457 | None:intergenic | 35.0% | |
| TTGTTTAACATGTGCCCTAA+GGG | - | chr3.4:56429827-56429846 | None:intergenic | 35.0% | |
| TTTCCATGTGCCTTATCTAA+GGG | - | chr3.4:56428817-56428836 | None:intergenic | 35.0% | |
| ! | ATGCAGAGAACTTGAAGTTT+TGG | - | chr3.4:56430181-56430200 | None:intergenic | 35.0% |
| ! | CTTTGCAATATGGTTTGTGA+TGG | + | chr3.4:56430108-56430127 | MS.gene04341:CDS | 35.0% |
| ! | CTTTGGTGACATTAATGTCA+CGG | - | chr3.4:56429484-56429503 | None:intergenic | 35.0% |
| ! | GAAGTCCTTGTTTACAAAGA+GGG | - | chr3.4:56431131-56431150 | None:intergenic | 35.0% |
| ! | TGAACGGTGAAGATTTTTAC+TGG | - | chr3.4:56430815-56430834 | None:intergenic | 35.0% |
| ! | TGAAGGTTGATCTTGAGATA+AGG | - | chr3.4:56428069-56428088 | None:intergenic | 35.0% |
| ! | TGAAGTCCTTGTTTACAAAG+AGG | - | chr3.4:56431132-56431151 | None:intergenic | 35.0% |
| ! | TGTCACTTATACAACACATC+TGG | - | chr3.4:56428917-56428936 | None:intergenic | 35.0% |
| ! | TTTTCCATGTGCCTTATCTA+AGG | - | chr3.4:56428818-56428837 | None:intergenic | 35.0% |
| !! | CAATTTTGTGTTGTTGGTTG+TGG | + | chr3.4:56430983-56431002 | MS.gene04341:intron | 35.0% |
| !! | TTTTCAGGGGAAAAGAGTAA+AGG | + | chr3.4:56429254-56429273 | MS.gene04341:intron | 35.0% |
| AATGGACCAAGATCTGATCT+TGG | + | chr3.4:56428164-56428183 | MS.gene04341:CDS | 40.0% | |
| ACAGGAATGTTGCATATGCT+TGG | + | chr3.4:56431008-56431027 | MS.gene04341:intron | 40.0% | |
| ACGCCTTGTATGTGATTAAG+GGG | + | chr3.4:56430745-56430764 | MS.gene04341:intron | 40.0% | |
| AGTATTTCCCCATATTGACC+GGG | - | chr3.4:56429344-56429363 | None:intergenic | 40.0% | |
| ATAAGGCACATGGAAAAGGT+GGG | + | chr3.4:56428821-56428840 | MS.gene04341:intron | 40.0% | |
| ATCTAATGTCACCCAATGTG+TGG | - | chr3.4:56429404-56429423 | None:intergenic | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | + | chr3.4:56428936-56428955 | MS.gene04341:intron | 40.0% | |
| ATTAAATGTGGGCCACACAT+TGG | + | chr3.4:56429389-56429408 | MS.gene04341:intron | 40.0% | |
| CATCCCCTTAATCACATACA+AGG | - | chr3.4:56430751-56430770 | None:intergenic | 40.0% | |
| CCCTATAGTGAAAATCCCTT+GGG | - | chr3.4:56430790-56430809 | None:intergenic | 40.0% | |
| CTTGTTAGCAATACCCCTTA+GGG | + | chr3.4:56429810-56429829 | MS.gene04341:intron | 40.0% | |
| GTAATGACAATGGCAATGTG+TGG | + | chr3.4:56429442-56429461 | MS.gene04341:intron | 40.0% | |
| GTATCTTAACATGTGCCTTG+AGG | + | chr3.4:56429939-56429958 | MS.gene04341:intron | 40.0% | |
| GTCACGGTGACATTAAATGT+GGG | + | chr3.4:56429378-56429397 | MS.gene04341:intron | 40.0% | |
| GTGACATTAGATGTGTTGTG+TGG | + | chr3.4:56429412-56429431 | MS.gene04341:intron | 40.0% | |
| GTGGCCCATATTTAATGTCA+CGG | - | chr3.4:56428872-56428891 | None:intergenic | 40.0% | |
| TAAGGTAGTTGGTTGAGGTA+TGG | - | chr3.4:56428051-56428070 | None:intergenic | 40.0% | |
| TATTGCTAACAAGTGCCCTT+AGG | - | chr3.4:56429803-56429822 | None:intergenic | 40.0% | |
| TCTCCATGTACCATATTGAC+GGG | - | chr3.4:56429512-56429531 | None:intergenic | 40.0% | |
| TGAGATAAGGTAGTTGGTTG+AGG | - | chr3.4:56428056-56428075 | None:intergenic | 40.0% | |
| TGTCACGGTGACATTAAATG+TGG | + | chr3.4:56429377-56429396 | MS.gene04341:intron | 40.0% | |
| TGTTCCAAAACGTGAGTCAA+AGG | - | chr3.4:56430146-56430165 | None:intergenic | 40.0% | |
| TGTTTAACATGTGCCCTAAG+GGG | - | chr3.4:56429826-56429845 | None:intergenic | 40.0% | |
| TTAAATGTGGGCCACACATT+GGG | + | chr3.4:56429390-56429409 | MS.gene04341:intron | 40.0% | |
| TTGTACCATGCAGTGTATAC+AGG | + | chr3.4:56430041-56430060 | MS.gene04341:intron | 40.0% | |
| ! | ACTTGTTAGCAATACCCCTT+AGG | + | chr3.4:56429809-56429828 | MS.gene04341:intron | 40.0% |
| ! | ATCAGATGCACCTTTAGAAG+AGG | - | chr3.4:56430320-56430339 | None:intergenic | 40.0% |
| ! | CCAAGGGATTTTCACTATAG+GGG | + | chr3.4:56430788-56430807 | MS.gene04341:intron | 40.0% |
| ! | CCCAAGGGATTTTCACTATA+GGG | + | chr3.4:56430787-56430806 | MS.gene04341:intron | 40.0% |
| ! | GACCAAACATCTCATTGACT+TGG | + | chr3.4:56429318-56429337 | MS.gene04341:intron | 40.0% |
| ! | GATCAGATCTTGGTCCATTT+TGG | - | chr3.4:56428163-56428182 | None:intergenic | 40.0% |
| ! | GCCACTTTAAATCTCCAAGA+TGG | - | chr3.4:56430361-56430380 | None:intergenic | 40.0% |
| ! | GGTTTGTGATGGGAAATGTT+TGG | + | chr3.4:56430119-56430138 | MS.gene04341:CDS | 40.0% |
| ! | TCCCAAGGGATTTTCACTAT+AGG | + | chr3.4:56430786-56430805 | MS.gene04341:intron | 40.0% |
| !! | AACATTGGCTCCTCTTCTAA+AGG | + | chr3.4:56430307-56430326 | MS.gene04341:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr3.4:56429957-56429976 | None:intergenic | 40.0% |
| !! | TATGTTACTTACCGGCTCTT+CGG | - | chr3.4:56430437-56430456 | None:intergenic | 40.0% |
| ACACAAAGGGTTGTGTTGTG+TGG | + | chr3.4:56428890-56428909 | MS.gene04341:intron | 45.0% | |
| ACACAACACAACCCTTTGTG+TGG | - | chr3.4:56428891-56428910 | None:intergenic | 45.0% | |
| ACACAACACACACCTTTGTG+TGG | - | chr3.4:56428951-56428970 | None:intergenic | 45.0% | |
| AGAAACCTGTTTGGCCTATG+AGG | + | chr3.4:56428288-56428307 | MS.gene04341:CDS | 45.0% | |
| AGCCTCTCTTATAGCTGAAG+TGG | + | chr3.4:56428782-56428801 | MS.gene04341:intron | 45.0% | |
| AGTGAAAATCCCTTGGGACT+TGG | - | chr3.4:56430784-56430803 | None:intergenic | 45.0% | |
| ATATTCTCTCCCAAGTCCCA+AGG | + | chr3.4:56430771-56430790 | MS.gene04341:intron | 45.0% | |
| CCAACTATCCAAACCCTCAT+AGG | - | chr3.4:56428305-56428324 | None:intergenic | 45.0% | |
| CCCCTATAGTGAAAATCCCT+TGG | - | chr3.4:56430791-56430810 | None:intergenic | 45.0% | |
| CCTATGAGGGTTTGGATAGT+TGG | + | chr3.4:56428302-56428321 | MS.gene04341:CDS | 45.0% | |
| CTTCAGCTATAAGAGAGGCT+TGG | - | chr3.4:56428782-56428801 | None:intergenic | 45.0% | |
| GAAACCTGTTTGGCCTATGA+GGG | + | chr3.4:56428289-56428308 | MS.gene04341:CDS | 45.0% | |
| GATAAGGCACATGGAAAAGG+TGG | + | chr3.4:56428820-56428839 | MS.gene04341:intron | 45.0% | |
| GCCTCTCTTATAGCTGAAGT+GGG | + | chr3.4:56428783-56428802 | MS.gene04341:intron | 45.0% | |
| GGCCAAGTCAATGAGATGTT+TGG | - | chr3.4:56429323-56429342 | None:intergenic | 45.0% | |
| GTGAAAATCCCTTGGGACTT+GGG | - | chr3.4:56430783-56430802 | None:intergenic | 45.0% | |
| TATTCTCTCCCAAGTCCCAA+GGG | + | chr3.4:56430772-56430791 | MS.gene04341:intron | 45.0% | |
| TGCTGCCCTCTTTGTAAACA+AGG | + | chr3.4:56431123-56431142 | MS.gene04341:CDS | 45.0% | |
| TGGCCCAGATGTAATGACAA+TGG | + | chr3.4:56429432-56429451 | MS.gene04341:intron | 45.0% | |
| ! | TGCTCTTGGCCTTTCTGATT+TGG | + | chr3.4:56428400-56428419 | MS.gene04341:CDS | 45.0% |
| ! | TGGTCCTTTGACTCACGTTT+TGG | + | chr3.4:56430139-56430158 | MS.gene04341:CDS | 45.0% |
| !! | AACATCTCATTGACTTGGCC+CGG | + | chr3.4:56429323-56429342 | MS.gene04341:intron | 45.0% |
| !!! | ACCTTCTAAGGGCACCTTTT+CGG | - | chr3.4:56429020-56429039 | None:intergenic | 45.0% |
| !! | TATAAAAATAAATAAACATA+TGG | - | chr3.4:56428508-56428527 | None:intergenic | 5.0% |
| !!! | AAATAAATATATTTTTTTTG+AGG | + | chr3.4:56429105-56429124 | MS.gene04341:intron | 5.0% |
| !!! | AATAAATATATTTTTTTTGA+GGG | + | chr3.4:56429106-56429125 | MS.gene04341:intron | 5.0% |
| !!! | TATTTTTATAAATTTATATG+TGG | + | chr3.4:56428518-56428537 | MS.gene04341:intron | 5.0% |
| AAGATTGATCGCCGAAGAGC+CGG | + | chr3.4:56430423-56430442 | MS.gene04341:CDS | 50.0% | |
| CAAACCCTCATAGGCCAAAC+AGG | - | chr3.4:56428296-56428315 | None:intergenic | 50.0% | |
| CAGCTATAAGAGAGGCTTGG+TGG | - | chr3.4:56428779-56428798 | None:intergenic | 50.0% | |
| CCACCCGTCAATATGGTACA+TGG | + | chr3.4:56429506-56429525 | MS.gene04341:intron | 50.0% | |
| CCACTCATTAGCACACTCCT+TGG | + | chr3.4:56430274-56430293 | MS.gene04341:CDS | 50.0% | |
| CCATGTACCATATTGACGGG+TGG | - | chr3.4:56429509-56429528 | None:intergenic | 50.0% | |
| CTGTTTGGCCTATGAGGGTT+TGG | + | chr3.4:56428294-56428313 | MS.gene04341:CDS | 50.0% | |
| CTTATAGCTGAAGTGGGCCT+AGG | + | chr3.4:56428789-56428808 | MS.gene04341:intron | 50.0% | |
| GCCCACTTCAGCTATAAGAG+AGG | - | chr3.4:56428787-56428806 | None:intergenic | 50.0% | |
| GGGACTAATGGAGATGCTCT+TGG | + | chr3.4:56428386-56428405 | MS.gene04341:CDS | 50.0% | |
| GTGCCCTTAGATAAGGCACA+TGG | + | chr3.4:56428811-56428830 | MS.gene04341:intron | 50.0% | |
| GTGCTCCTGTATACACTGCA+TGG | - | chr3.4:56430049-56430068 | None:intergenic | 50.0% | |
| ! | CAAAGTGCCACCCGTCAATA+TGG | + | chr3.4:56429499-56429518 | MS.gene04341:intron | 50.0% |
| ! | CATATTGACGGGTGGCACTT+TGG | - | chr3.4:56429501-56429520 | None:intergenic | 50.0% |
| ! | CCAAGGAGTGTGCTAATGAG+TGG | - | chr3.4:56430277-56430296 | None:intergenic | 50.0% |
| ! | GTGTTGTTGGTTGTGGTGAC+AGG | + | chr3.4:56430990-56431009 | MS.gene04341:intron | 50.0% |
| ! | TGACTTGGCCCGGTCAATAT+GGG | + | chr3.4:56429333-56429352 | MS.gene04341:intron | 50.0% |
| !! | TGCCTTATCTAAGGGCACCT+AGG | - | chr3.4:56428809-56428828 | None:intergenic | 50.0% |
| !! | TTGACTTGGCCCGGTCAATA+TGG | + | chr3.4:56429332-56429351 | MS.gene04341:intron | 50.0% |
| !!! | CCTTCTAAGGGCACCTTTTC+GGG | - | chr3.4:56429019-56429038 | None:intergenic | 50.0% |
| GACTTGGCCCGGTCAATATG+GGG | + | chr3.4:56429334-56429353 | MS.gene04341:intron | 55.0% | |
| GGCCTAGGTGCCCTTAGATA+AGG | + | chr3.4:56428804-56428823 | MS.gene04341:intron | 55.0% | |
| ! | CACCAAAGTGCCACCCGAAA+AGG | + | chr3.4:56429003-56429022 | MS.gene04341:intron | 55.0% |
| !! | CCCGAAAAGGTGCCCTTAGA+AGG | + | chr3.4:56429016-56429035 | MS.gene04341:intron | 55.0% |
| !!! | CACCTTTTCGGGTGGCACTT+TGG | - | chr3.4:56429008-56429027 | None:intergenic | 55.0% |
| !!! | TCTAAGGGCACCTTTTCGGG+TGG | - | chr3.4:56429016-56429035 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 56428029 | 56431158 | 56428029 | ID=MS.gene04341 |
| chr3.4 | mRNA | 56428029 | 56431158 | 56428029 | ID=MS.gene04341.t1;Parent=MS.gene04341 |
| chr3.4 | exon | 56428029 | 56428450 | 56428029 | ID=MS.gene04341.t1.exon1;Parent=MS.gene04341.t1 |
| chr3.4 | CDS | 56428029 | 56428450 | 56428029 | ID=cds.MS.gene04341.t1;Parent=MS.gene04341.t1 |
| chr3.4 | exon | 56430054 | 56430444 | 56430054 | ID=MS.gene04341.t1.exon2;Parent=MS.gene04341.t1 |
| chr3.4 | CDS | 56430054 | 56430444 | 56430054 | ID=cds.MS.gene04341.t1;Parent=MS.gene04341.t1 |
| chr3.4 | exon | 56431012 | 56431158 | 56431012 | ID=MS.gene04341.t1.exon3;Parent=MS.gene04341.t1 |
| chr3.4 | CDS | 56431012 | 56431158 | 56431012 | ID=cds.MS.gene04341.t1;Parent=MS.gene04341.t1 |
| Gene Sequence |
| Protein sequence |
