Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23506.t1 | XP_013449864.1 | 97.8 | 138 | 3 | 0 | 1 | 138 | 1 | 138 | 2.70E-69 | 271.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23506.t1 | P49964 | 68.9 | 132 | 37 | 2 | 7 | 138 | 9 | 136 | 2.1e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23506.t1 | A0A072U2F6 | 97.8 | 138 | 3 | 0 | 1 | 138 | 1 | 138 | 2.0e-69 | 271.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050320 | MS.gene23506 | 0.804653 | 1.95E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene23506 | 0.810939 | 8.98E-51 | -1.69E-46 |
| MS.gene051756 | MS.gene23506 | 0.814964 | 1.18E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene23506 | 0.817612 | 3.01E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene23506 | 0.807408 | 5.13E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene23506 | 0.80983 | 1.56E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene23506 | 0.835635 | 1.50E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23506 | MS.gene75343 | PPI |
| MS.gene23506 | MS.gene026743 | PPI |
| MS.gene23506 | MS.gene034094 | PPI |
| MS.gene23506 | MS.gene61154 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23506.t1 | MTR_7g096570 | 97.826 | 138 | 3 | 0 | 1 | 138 | 1 | 138 | 2.37e-99 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23506.t1 | AT1G48160 | 69.369 | 111 | 34 | 0 | 1 | 111 | 1 | 111 | 1.30e-56 | 173 |
| MS.gene23506.t1 | AT1G48160 | 69.369 | 111 | 34 | 0 | 1 | 111 | 1 | 111 | 1.30e-56 | 173 |
Find 36 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCAGCAACAGTCTTCT+TGG | 0.199519 | 7.3:+14690445 | None:intergenic |
| TGGTCCTTCCATGGTGTTTA+GGG | 0.204157 | 7.3:+14688384 | None:intergenic |
| AACCCTACTTGTGTCGAAAT+TGG | 0.211223 | 7.3:-14690392 | MS.gene23506:CDS |
| TGATGCAGTCTCCTGCTTCT+TGG | 0.227052 | 7.3:+14688364 | None:intergenic |
| TTGGTCCTTCCATGGTGTTT+AGG | 0.258012 | 7.3:+14688383 | None:intergenic |
| TTCTTGGAATTGATGTAAAC+AGG | 0.310953 | 7.3:+14690461 | None:intergenic |
| TCATGCAAAGAGGACGAGTT+AGG | 0.334941 | 7.3:-14690211 | MS.gene23506:CDS |
| ACCCTACTTGTGTCGAAATT+GGG | 0.338535 | 7.3:-14690391 | MS.gene23506:CDS |
| GCTGGACCTTCCAACAAATC+TGG | 0.347799 | 7.3:-14688326 | MS.gene23506:CDS |
| TCCACCTTTCCCAGATTTGT+TGG | 0.371350 | 7.3:+14688316 | None:intergenic |
| CCTGCTTCTTGGTCCTTCCA+TGG | 0.417818 | 7.3:+14688375 | None:intergenic |
| CCTTTCCCAGATTTGTTGGA+AGG | 0.448852 | 7.3:+14688320 | None:intergenic |
| TCAACAACAACTGCAACTGC+TGG | 0.454659 | 7.3:-14688344 | MS.gene23506:CDS |
| CATGCAAAGAGGACGAGTTA+GGG | 0.478286 | 7.3:-14690210 | MS.gene23506:CDS |
| AACCTCACCTCGATTGCAAA+AGG | 0.487649 | 7.3:+14690344 | None:intergenic |
| ACGATCCATCTCTTTATGCT+TGG | 0.492762 | 7.3:+14690491 | None:intergenic |
| GTTGCTGAAGGAAGAAGAAT+CGG | 0.496341 | 7.3:-14690434 | MS.gene23506:CDS |
| CTGGACCTTCCAACAAATCT+GGG | 0.500340 | 7.3:-14688325 | MS.gene23506:CDS |
| CCCCAATTTCGACACAAGTA+GGG | 0.516511 | 7.3:+14690390 | None:intergenic |
| CCATGGAAGGACCAAGAAGC+AGG | 0.522661 | 7.3:-14688375 | MS.gene23506:CDS |
| CCCTACTTGTGTCGAAATTG+GGG | 0.523869 | 7.3:-14690390 | MS.gene23506:CDS |
| AATGTTACGCGTTGCAGAGA+TGG | 0.526719 | 7.3:-14688408 | MS.gene23506:CDS |
| TCCCCAATTTCGACACAAGT+AGG | 0.535068 | 7.3:+14690389 | None:intergenic |
| TCCAAGAAGACTGTTGCTGA+AGG | 0.561279 | 7.3:-14690446 | MS.gene23506:CDS |
| CCTCGTGATTTCATGCAAAG+AGG | 0.566493 | 7.3:-14690221 | MS.gene23506:CDS |
| AACTTACTGGAAGCTATGGA+TGG | 0.567619 | 7.3:+14690152 | None:intergenic |
| TCCAACAAATCTGGGAAAGG+TGG | 0.573312 | 7.3:-14688317 | MS.gene23506:CDS |
| TTCACAAAGTGTAAGATGGA+AGG | 0.594062 | 7.3:-14690521 | None:intergenic |
| AATTACCAAGCATAAAGAGA+TGG | 0.602608 | 7.3:-14690496 | MS.gene23506:CDS |
| CCTTCCAACAAATCTGGGAA+AGG | 0.605602 | 7.3:-14688320 | MS.gene23506:CDS |
| TTGTTGATCACAGCTTGACA+AGG | 0.619387 | 7.3:-14690249 | MS.gene23506:intron |
| TGGTCCCTAAACACCATGGA+AGG | 0.619588 | 7.3:-14688388 | MS.gene23506:CDS |
| CCTCTTTGCATGAAATCACG+AGG | 0.620436 | 7.3:+14690221 | None:intergenic |
| TCTTGGAATTGATGTAAACA+GGG | 0.634146 | 7.3:+14690462 | None:intergenic |
| GAGATGGTCCCTAAACACCA+TGG | 0.690946 | 7.3:-14688392 | MS.gene23506:CDS |
| CTCTTTGCATGAAATCACGA+GGG | 0.694337 | 7.3:+14690222 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATTATTAGAGAAAAA+GGG | + | chr7.3:14689748-14689767 | None:intergenic | 10.0% |
| !! | TTTGAATATAGATTTAAAAA+GGG | + | chr7.3:14689454-14689473 | None:intergenic | 10.0% |
| !!! | TACTTTTATGTTAAATAAAA+TGG | + | chr7.3:14689181-14689200 | None:intergenic | 10.0% |
| !!! | TTTTGAATATAGATTTAAAA+AGG | + | chr7.3:14689455-14689474 | None:intergenic | 10.0% |
| !! | CAATTAATTATTAGAGAAAA+AGG | + | chr7.3:14689749-14689768 | None:intergenic | 15.0% |
| !! | ATAAAAAGAATAGCATAATG+TGG | + | chr7.3:14689898-14689917 | None:intergenic | 20.0% |
| !! | ATATTGAAGAAAAAACTTAC+TGG | + | chr7.3:14688671-14688690 | None:intergenic | 20.0% |
| !! | ATTAATTGTAAGATCTGAAA+TGG | - | chr7.3:14689761-14689780 | MS.gene23506:intron | 20.0% |
| !! | TTCTTTCTTAGAAATGAAAT+TGG | - | chr7.3:14689295-14689314 | MS.gene23506:intron | 20.0% |
| !!! | CTTATAATATTCCACTTTTA+TGG | - | chr7.3:14689050-14689069 | MS.gene23506:intron | 20.0% |
| !!! | TTACAAATTCAAGTTGATTA+AGG | - | chr7.3:14689515-14689534 | MS.gene23506:intron | 20.0% |
| !!! | TTATGATAGCTTATTTCTTA+TGG | - | chr7.3:14690201-14690220 | MS.gene23506:CDS | 20.0% |
| ! | AAAAGAATAGCATAATCTTG+TGG | + | chr7.3:14689849-14689868 | None:intergenic | 25.0% |
| ! | AAGATATCAAAGTAATGTTG+TGG | + | chr7.3:14688845-14688864 | None:intergenic | 25.0% |
| ! | AGACCATGATAATATAACAT+TGG | - | chr7.3:14689823-14689842 | MS.gene23506:intron | 25.0% |
| ! | TAATATAGTTCTTAGCTATC+TGG | - | chr7.3:14688729-14688748 | MS.gene23506:intron | 25.0% |
| ! | TATATTGTTATGATTTCCAG+CGG | + | chr7.3:14690140-14690159 | None:intergenic | 25.0% |
| !! | ACATTGATTATACTTTCTAC+CGG | - | chr7.3:14689022-14689041 | MS.gene23506:intron | 25.0% |
| !! | AGAACACATTTTATGGAAAT+GGG | + | chr7.3:14688820-14688839 | None:intergenic | 25.0% |
| !! | TAGAACACATTTTATGGAAA+TGG | + | chr7.3:14688821-14688840 | None:intergenic | 25.0% |
| !! | TTCATGAAAGCATAAGAATT+GGG | - | chr7.3:14690072-14690091 | MS.gene23506:intron | 25.0% |
| !!! | AACTACTTTAGAGTTTGATA+AGG | + | chr7.3:14689787-14689806 | None:intergenic | 25.0% |
| !!! | ATGCTACTTTAGTTAAAACA+AGG | + | chr7.3:14689549-14689568 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTATGTCTTTGC+AGG | - | chr7.3:14690367-14690386 | MS.gene23506:CDS | 25.0% |
| AAAAAACTTACTGGAAGCTA+TGG | + | chr7.3:14688662-14688681 | None:intergenic | 30.0% | |
| AAAGCACAAATTGAAGAAGT+AGG | - | chr7.3:14689575-14689594 | MS.gene23506:intron | 30.0% | |
| AATATCATAGATGATCTCTC+TGG | + | chr7.3:14690176-14690195 | None:intergenic | 30.0% | |
| AATGTTACATGCATAAGGTA+TGG | + | chr7.3:14689350-14689369 | None:intergenic | 30.0% | |
| AATTACCAAGCATAAAGAGA+TGG | - | chr7.3:14688311-14688330 | MS.gene23506:CDS | 30.0% | |
| ATATTGTTATGATTTCCAGC+GGG | + | chr7.3:14690139-14690158 | None:intergenic | 30.0% | |
| CAATTCTTATGCTTTCATGA+AGG | + | chr7.3:14690073-14690092 | None:intergenic | 30.0% | |
| CTAAATCCTATAATTTCTGC+AGG | + | chr7.3:14689945-14689964 | None:intergenic | 30.0% | |
| CTGCAGAAATTATAGGATTT+AGG | - | chr7.3:14689943-14689962 | MS.gene23506:intron | 30.0% | |
| GTTAATAACATCACAACAGA+GGG | - | chr7.3:14689620-14689639 | MS.gene23506:intron | 30.0% | |
| TCTTGGAATTGATGTAAACA+GGG | + | chr7.3:14688348-14688367 | None:intergenic | 30.0% | |
| TGCAAGCATCACATATTAAA+AGG | - | chr7.3:14690260-14690279 | MS.gene23506:intron | 30.0% | |
| TGCATAATGTTACATGCATA+AGG | + | chr7.3:14689355-14689374 | None:intergenic | 30.0% | |
| TGGAATATTATAAGTAGTGC+CGG | + | chr7.3:14689044-14689063 | None:intergenic | 30.0% | |
| TGGCCAATGTTATATTATCA+TGG | + | chr7.3:14689829-14689848 | None:intergenic | 30.0% | |
| TGTTAATAACATCACAACAG+AGG | - | chr7.3:14689619-14689638 | MS.gene23506:intron | 30.0% | |
| TTCTTGGAATTGATGTAAAC+AGG | + | chr7.3:14688349-14688368 | None:intergenic | 30.0% | |
| TTGTAATGACAAAGTGATAC+TGG | - | chr7.3:14688950-14688969 | MS.gene23506:intron | 30.0% | |
| TTTAAGCCTGCAGAAATTAT+AGG | - | chr7.3:14689936-14689955 | MS.gene23506:intron | 30.0% | |
| ! | CTTCATGAAAGCATAAGAAT+TGG | - | chr7.3:14690071-14690090 | MS.gene23506:intron | 30.0% |
| ! | GAACACATTTTATGGAAATG+GGG | + | chr7.3:14688819-14688838 | None:intergenic | 30.0% |
| ! | GTATAAGTTCTAATTGTGGA+TGG | - | chr7.3:14689106-14689125 | MS.gene23506:intron | 30.0% |
| ! | TCACGTATAAGTTCTAATTG+TGG | - | chr7.3:14689102-14689121 | MS.gene23506:intron | 30.0% |
| ! | TGTGGTTAGAACACATTTTA+TGG | + | chr7.3:14688827-14688846 | None:intergenic | 30.0% |
| !! | AGTTAATGATTTGCTCACAT+AGG | - | chr7.3:14689217-14689236 | MS.gene23506:intron | 30.0% |
| !!! | CTCCAATATTTTGACTGTTT+AGG | - | chr7.3:14689480-14689499 | MS.gene23506:intron | 30.0% |
| !!! | GTTAGACTTTTGTTTCTGTT+TGG | - | chr7.3:14689155-14689174 | MS.gene23506:intron | 30.0% |
| GATCAACATAGAAGATACGT+AGG | - | chr7.3:14689379-14689398 | MS.gene23506:intron | 35.0% | |
| GGCCTAAACAGTCAAAATAT+TGG | + | chr7.3:14689485-14689504 | None:intergenic | 35.0% | |
| TCTTCTCCATTTCTTGTCTT+GGG | + | chr7.3:14689323-14689342 | None:intergenic | 35.0% | |
| ! | ACGTAGGAACTACATGTTTT+TGG | - | chr7.3:14689395-14689414 | MS.gene23506:intron | 35.0% |
| ! | AGTTAGGGTTTTGCTCAAAA+AGG | - | chr7.3:14688612-14688631 | MS.gene23506:intron | 35.0% |
| ! | GTAAAACTAGTTTGCACTGA+CGG | - | chr7.3:14689715-14689734 | MS.gene23506:intron | 35.0% |
| ! | TAAACTTCCTTTTGCAATCG+AGG | - | chr7.3:14688456-14688475 | MS.gene23506:intron | 35.0% |
| ! | TTTTGCTCAAAAAGGAGGAT+GGG | - | chr7.3:14688620-14688639 | MS.gene23506:intron | 35.0% |
| !! | AAGTGATACTGGCTTTAAGT+TGG | - | chr7.3:14688961-14688980 | MS.gene23506:intron | 35.0% |
| !! | AGTGATACTGGCTTTAAGTT+GGG | - | chr7.3:14688962-14688981 | MS.gene23506:intron | 35.0% |
| !! | ATATTCCACTTTTATGGCTC+TGG | - | chr7.3:14689056-14689075 | MS.gene23506:intron | 35.0% |
| !! | TGAATTTGTAAAAGTGCCAC+TGG | + | chr7.3:14689506-14689525 | None:intergenic | 35.0% |
| !! | TTTCATGAAGGCGTTTGAAT+TGG | + | chr7.3:14690061-14690080 | None:intergenic | 35.0% |
| AACCCTACTTGTGTCGAAAT+TGG | - | chr7.3:14688415-14688434 | MS.gene23506:CDS | 40.0% | |
| AACTTACTGGAAGCTATGGA+TGG | + | chr7.3:14688658-14688677 | None:intergenic | 40.0% | |
| AAGAATTGGGATGAACCTGA+GGG | - | chr7.3:14690085-14690104 | MS.gene23506:intron | 40.0% | |
| ACCCTACTTGTGTCGAAATT+GGG | - | chr7.3:14688416-14688435 | MS.gene23506:CDS | 40.0% | |
| ACGATCCATCTCTTTATGCT+TGG | + | chr7.3:14688319-14688338 | None:intergenic | 40.0% | |
| ATAGATGATCTCTCTGGTGT+GGG | + | chr7.3:14690170-14690189 | None:intergenic | 40.0% | |
| CTCTTCTCCATTTCTTGTCT+TGG | + | chr7.3:14689324-14689343 | None:intergenic | 40.0% | |
| CTCTTTGCATGAAATCACGA+GGG | + | chr7.3:14688588-14688607 | None:intergenic | 40.0% | |
| GTTGCTGAAGGAAGAAGAAT+CGG | - | chr7.3:14688373-14688392 | MS.gene23506:CDS | 40.0% | |
| TAAGAATTGGGATGAACCTG+AGG | - | chr7.3:14690084-14690103 | MS.gene23506:intron | 40.0% | |
| TTGGATCCCAAGACAAGAAA+TGG | - | chr7.3:14689314-14689333 | MS.gene23506:intron | 40.0% | |
| TTGTTGATCACAGCTTGACA+AGG | - | chr7.3:14688558-14688577 | MS.gene23506:intron | 40.0% | |
| ! | AGTAGGGTTTTCGCATGATT+TGG | + | chr7.3:14688404-14688423 | None:intergenic | 40.0% |
| ! | CACATTTTATGGAAATGGGG+TGG | + | chr7.3:14688816-14688835 | None:intergenic | 40.0% |
| ! | GGATGGACTTAGAGTAGAAT+TGG | - | chr7.3:14689123-14689142 | MS.gene23506:intron | 40.0% |
| ! | GTTTTGCTCAAAAAGGAGGA+TGG | - | chr7.3:14688619-14688638 | MS.gene23506:intron | 40.0% |
| ! | TAGGGTTTTGCTCAAAAAGG+AGG | - | chr7.3:14688615-14688634 | MS.gene23506:intron | 40.0% |
| ! | TCATTCCTTTTCTAAGCCAG+AGG | - | chr7.3:14688790-14688809 | MS.gene23506:intron | 40.0% |
| !!! | ATTTTGACTGTTTAGGCCAG+TGG | - | chr7.3:14689487-14689506 | MS.gene23506:intron | 40.0% |
| AAACCCGTTGCATGGTGAAA+AGG | - | chr7.3:14690003-14690022 | MS.gene23506:intron | 45.0% | |
| AACCCGTTGCATGGTGAAAA+GGG | - | chr7.3:14690004-14690023 | MS.gene23506:intron | 45.0% | |
| AACCTCACCTCGATTGCAAA+AGG | + | chr7.3:14688466-14688485 | None:intergenic | 45.0% | |
| AATGTTACGCGTTGCAGAGA+TGG | - | chr7.3:14690399-14690418 | MS.gene23506:CDS | 45.0% | |
| AGAATTGGGATGAACCTGAG+GGG | - | chr7.3:14690086-14690105 | MS.gene23506:intron | 45.0% | |
| CATAGATGATCTCTCTGGTG+TGG | + | chr7.3:14690171-14690190 | None:intergenic | 45.0% | |
| CATGCAAAGAGGACGAGTTA+GGG | - | chr7.3:14688597-14688616 | MS.gene23506:intron | 45.0% | |
| CCCCAATTTCGACACAAGTA+GGG | + | chr7.3:14688420-14688439 | None:intergenic | 45.0% | |
| CCCTACTTGTGTCGAAATTG+GGG | - | chr7.3:14688417-14688436 | MS.gene23506:CDS | 45.0% | |
| CCTCGTGATTTCATGCAAAG+AGG | - | chr7.3:14688586-14688605 | MS.gene23506:intron | 45.0% | |
| CCTCTTTGCATGAAATCACG+AGG | + | chr7.3:14688589-14688608 | None:intergenic | 45.0% | |
| CCTTCCAACAAATCTGGGAA+AGG | - | chr7.3:14690487-14690506 | MS.gene23506:CDS | 45.0% | |
| CTGGACCTTCCAACAAATCT+GGG | - | chr7.3:14690482-14690501 | MS.gene23506:CDS | 45.0% | |
| GGCGAAGAATACGTTCTTAG+AGG | - | chr7.3:14690025-14690044 | MS.gene23506:intron | 45.0% | |
| TCAACAACAACTGCAACTGC+TGG | - | chr7.3:14690463-14690482 | MS.gene23506:CDS | 45.0% | |
| TCATGCAAAGAGGACGAGTT+AGG | - | chr7.3:14688596-14688615 | MS.gene23506:intron | 45.0% | |
| TCCAACAAATCTGGGAAAGG+TGG | - | chr7.3:14690490-14690509 | MS.gene23506:CDS | 45.0% | |
| TCCAAGAAGACTGTTGCTGA+AGG | - | chr7.3:14688361-14688380 | MS.gene23506:CDS | 45.0% | |
| TCCACCTTTCCCAGATTTGT+TGG | + | chr7.3:14690494-14690513 | None:intergenic | 45.0% | |
| TCCCCAATTTCGACACAAGT+AGG | + | chr7.3:14688421-14688440 | None:intergenic | 45.0% | |
| TCCTTCAGCAACAGTCTTCT+TGG | + | chr7.3:14688365-14688384 | None:intergenic | 45.0% | |
| TGAGTCCAGAGCCATAAAAG+TGG | + | chr7.3:14689064-14689083 | None:intergenic | 45.0% | |
| TGGTCCTTCCATGGTGTTTA+GGG | + | chr7.3:14690426-14690445 | None:intergenic | 45.0% | |
| TTGGTCCTTCCATGGTGTTT+AGG | + | chr7.3:14690427-14690446 | None:intergenic | 45.0% | |
| ! | ACTCAACACTGGATTGGAAC+TGG | - | chr7.3:14689079-14689098 | MS.gene23506:intron | 45.0% |
| ! | TTCCTTTTGCAATCGAGGTG+AGG | - | chr7.3:14688461-14688480 | MS.gene23506:intron | 45.0% |
| !! | CCTTTCCCAGATTTGTTGGA+AGG | + | chr7.3:14690490-14690509 | None:intergenic | 45.0% |
| ACCAACGTCAGCATCAGAGT+CGG | + | chr7.3:14688871-14688890 | None:intergenic | 50.0% | |
| ACTCTGATGCTGACGTTGGT+TGG | - | chr7.3:14688871-14688890 | MS.gene23506:intron | 50.0% | |
| CTCTGGACTCAACACTGGAT+TGG | - | chr7.3:14689073-14689092 | MS.gene23506:intron | 50.0% | |
| GAATTGGGATGAACCTGAGG+GGG | - | chr7.3:14690087-14690106 | MS.gene23506:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr7.3:14689972-14689991 | MS.gene23506:intron | 50.0% | |
| GAGATGGTCCCTAAACACCA+TGG | - | chr7.3:14690415-14690434 | MS.gene23506:CDS | 50.0% | |
| GCTGGACCTTCCAACAAATC+TGG | - | chr7.3:14690481-14690500 | MS.gene23506:CDS | 50.0% | |
| GGAAACTGAAACCCGTTGCA+TGG | - | chr7.3:14689995-14690014 | MS.gene23506:intron | 50.0% | |
| TGATGCAGTCTCCTGCTTCT+TGG | + | chr7.3:14690446-14690465 | None:intergenic | 50.0% | |
| TGGTCCCTAAACACCATGGA+AGG | - | chr7.3:14690419-14690438 | MS.gene23506:CDS | 50.0% | |
| ! | TCGCCCTTTTCACCATGCAA+CGG | + | chr7.3:14690010-14690029 | None:intergenic | 50.0% |
| !! | TATGGCTCTGGACTCAACAC+TGG | - | chr7.3:14689068-14689087 | MS.gene23506:intron | 50.0% |
| ATTTCCAGCGGGACGTCTTC+CGG | + | chr7.3:14690128-14690147 | None:intergenic | 55.0% | |
| CCATGGAAGGACCAAGAAGC+AGG | - | chr7.3:14690432-14690451 | MS.gene23506:CDS | 55.0% | |
| CCTGCTTCTTGGTCCTTCCA+TGG | + | chr7.3:14690435-14690454 | None:intergenic | 55.0% | |
| TATGGAAATGGGGTGGCCTC+TGG | + | chr7.3:14688809-14688828 | None:intergenic | 55.0% | |
| TCCGACTCTGATGCTGACGT+TGG | - | chr7.3:14688867-14688886 | MS.gene23506:intron | 55.0% | |
| ! | ACGTTGGTTGGCGTTTCGCT+TGG | - | chr7.3:14688883-14688902 | MS.gene23506:intron | 55.0% |
| ! | CGCCCTTTTCACCATGCAAC+GGG | + | chr7.3:14690009-14690028 | None:intergenic | 55.0% |
| ! | GGTGGCCTCTGGCTTAGAAA+AGG | + | chr7.3:14688798-14688817 | None:intergenic | 55.0% |
| GACGAAGTTGTCTCCCCCTC+AGG | + | chr7.3:14690103-14690122 | None:intergenic | 60.0% | |
| GGGGAGACAACTTCGTCCAC+CGG | - | chr7.3:14690106-14690125 | MS.gene23506:intron | 60.0% | |
| TCCACCGGAAGACGTCCCGC+TGG | - | chr7.3:14690121-14690140 | MS.gene23506:intron | 70.0% | |
| TCCAGCGGGACGTCTTCCGG+TGG | + | chr7.3:14690125-14690144 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 14688301 | 14690528 | 14688301 | ID=MS.gene23506 |
| chr7.3 | mRNA | 14688301 | 14690528 | 14688301 | ID=MS.gene23506.t1;Parent=MS.gene23506 |
| chr7.3 | exon | 14690352 | 14690528 | 14690352 | ID=MS.gene23506.t1.exon1;Parent=MS.gene23506.t1 |
| chr7.3 | CDS | 14690352 | 14690528 | 14690352 | ID=cds.MS.gene23506.t1;Parent=MS.gene23506.t1 |
| chr7.3 | exon | 14690159 | 14690258 | 14690159 | ID=MS.gene23506.t1.exon2;Parent=MS.gene23506.t1 |
| chr7.3 | CDS | 14690159 | 14690258 | 14690159 | ID=cds.MS.gene23506.t1;Parent=MS.gene23506.t1 |
| chr7.3 | exon | 14688301 | 14688440 | 14688301 | ID=MS.gene23506.t1.exon3;Parent=MS.gene23506.t1 |
| chr7.3 | CDS | 14688301 | 14688440 | 14688301 | ID=cds.MS.gene23506.t1;Parent=MS.gene23506.t1 |
| Gene Sequence |
| Protein sequence |
