Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02886.t1 | XP_003594333.1 | 96 | 404 | 16 | 0 | 1 | 404 | 1 | 404 | 3.30E-214 | 754.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02886.t1 | Q9FIK2 | 54.5 | 429 | 133 | 8 | 1 | 428 | 1 | 368 | 6.0e-108 | 392.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02886.t1 | G7IQ42 | 96.0 | 404 | 16 | 0 | 1 | 404 | 1 | 404 | 2.4e-214 | 754.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068879 | MS.gene02886 | PPI |
| MS.gene072798 | MS.gene02886 | PPI |
| MS.gene001426 | MS.gene02886 | PPI |
| MS.gene75012 | MS.gene02886 | PPI |
| MS.gene24607 | MS.gene02886 | PPI |
| MS.gene02886 | MS.gene015568 | PPI |
| MS.gene002214 | MS.gene02886 | PPI |
| MS.gene050374 | MS.gene02886 | PPI |
| MS.gene029826 | MS.gene02886 | PPI |
| MS.gene050551 | MS.gene02886 | PPI |
| MS.gene019291 | MS.gene02886 | PPI |
| MS.gene22899 | MS.gene02886 | PPI |
| MS.gene01187 | MS.gene02886 | PPI |
| MS.gene02886 | MS.gene026001 | PPI |
| MS.gene024548 | MS.gene02886 | PPI |
| MS.gene071905 | MS.gene02886 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02886.t1 | MTR_2g027390 | 96.759 | 432 | 10 | 2 | 1 | 428 | 1 | 432 | 0.0 | 842 |
| MS.gene02886.t1 | MTR_7g017500 | 39.474 | 114 | 66 | 3 | 93 | 205 | 149 | 260 | 1.61e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02886.t1 | AT5G47790 | 58.508 | 429 | 116 | 8 | 1 | 428 | 1 | 368 | 6.70e-162 | 461 |
| MS.gene02886.t1 | AT5G38840 | 39.640 | 111 | 64 | 3 | 96 | 205 | 93 | 201 | 3.82e-19 | 90.5 |
Find 125 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGTATATGTAATTGATT+TGG | 0.192768 | 2.4:-61647543 | MS.gene02886:CDS |
| TTGGAACCGTTCTCTGTTAA+TGG | 0.193902 | 2.4:-61648347 | MS.gene02886:CDS |
| GGTGCTAGATAGGATTAATT+TGG | 0.279458 | 2.4:-61648048 | MS.gene02886:CDS |
| AGAAGATGAGAGTTTCATTC+AGG | 0.291478 | 2.4:-61647181 | MS.gene02886:CDS |
| AGTGGAGGCGGCTCCGTTGT+TGG | 0.292771 | 2.4:-61648186 | MS.gene02886:CDS |
| GTGGAGGCGGCTCCGTTGTT+GGG | 0.315269 | 2.4:-61648185 | MS.gene02886:CDS |
| GTTTAAGAAAGCCGAGAGTT+TGG | 0.325196 | 2.4:-61648366 | MS.gene02886:CDS |
| ACTACCAAGCTCAGTGGATT+TGG | 0.351010 | 2.4:+61647259 | None:intergenic |
| GGGATTTACGATGACCTATA+TGG | 0.356648 | 2.4:-61646912 | MS.gene02886:CDS |
| GAGGACTGCCCTTTCCCCTT+TGG | 0.357778 | 2.4:+61647020 | None:intergenic |
| TTTCATTCAGGGATCAGGTT+GGG | 0.361537 | 2.4:-61647169 | MS.gene02886:CDS |
| AGTGTATATGTAATTGATTT+GGG | 0.362845 | 2.4:-61647542 | MS.gene02886:CDS |
| GAGGATGATGATGATTTGTT+TGG | 0.370753 | 2.4:-61646759 | MS.gene02886:CDS |
| CCCTCGTCCTTCACCACCCA+CGG | 0.373388 | 2.4:-61647384 | MS.gene02886:CDS |
| CTTCCTTCCTTAACACCAAC+TGG | 0.386824 | 2.4:+61647086 | None:intergenic |
| GAAGAACATCTGGTCTTGAT+AGG | 0.392084 | 2.4:-61648388 | MS.gene02886:CDS |
| ACCTGGTCCAGTTGGTGTTA+AGG | 0.396500 | 2.4:-61647093 | MS.gene02886:CDS |
| TTCATTCAGGGATCAGGTTG+GGG | 0.397217 | 2.4:-61647168 | MS.gene02886:CDS |
| CGCGGCTCAATCGCCCAATC+TGG | 0.397896 | 2.4:+61648110 | None:intergenic |
| TGTAATTTGAAGAGAATGTA+TGG | 0.407152 | 2.4:-61648410 | None:intergenic |
| GGAGAGTTAGTTGAGGTTGT+TGG | 0.408959 | 2.4:-61647146 | MS.gene02886:CDS |
| TAAGGTAGTTGGTCATTCTT+CGG | 0.414880 | 2.4:-61648288 | MS.gene02886:CDS |
| TCTTAGCAGCTCTTTCTGAT+TGG | 0.422101 | 2.4:+61647210 | None:intergenic |
| TCCGATGGGTCAGGAGGTGG+TGG | 0.423621 | 2.4:+61647350 | None:intergenic |
| TCTCCATTCTCCTTAGCTGC+TGG | 0.430224 | 2.4:+61646822 | None:intergenic |
| GTTGTTGGGGCAGAATCAAC+AGG | 0.433225 | 2.4:-61648171 | MS.gene02886:CDS |
| GAGAGTTTCATTCAGGGATC+AGG | 0.440722 | 2.4:-61647174 | MS.gene02886:CDS |
| AGGATGGTCAGGTGCTAGAT+AGG | 0.444081 | 2.4:-61648058 | MS.gene02886:CDS |
| GATGTGGCAGCCACCAGATT+GGG | 0.444291 | 2.4:-61648123 | MS.gene02886:CDS |
| AATACGCTGCTGAATCGTTA+TGG | 0.447922 | 2.4:-61647305 | MS.gene02886:CDS |
| CAAGCACAAAATCACAAGTC+TGG | 0.448208 | 2.4:+61647994 | None:intergenic |
| GCCTCTTCATCCGATGGGTC+AGG | 0.453710 | 2.4:+61647341 | None:intergenic |
| AGAATGTATGGAAGAACATC+TGG | 0.453804 | 2.4:-61648398 | MS.gene02886:CDS |
| CTGTAATTCCAAAGGGGAAA+GGG | 0.464451 | 2.4:-61647028 | MS.gene02886:CDS |
| CAAACTACTGTAATTCCAAA+GGG | 0.471274 | 2.4:-61647035 | MS.gene02886:CDS |
| AAACTCAACAGGTGAATCCT+TGG | 0.474394 | 2.4:+61647481 | None:intergenic |
| CGATGTGGCAGCCACCAGAT+TGG | 0.476461 | 2.4:-61648124 | MS.gene02886:CDS |
| TCCTTAACACCAACTGGACC+AGG | 0.478092 | 2.4:+61647092 | None:intergenic |
| GCGCCAGCAGCTAAGGAGAA+TGG | 0.478653 | 2.4:-61646825 | MS.gene02886:CDS |
| CCTCGTCCTTCACCACCCAC+GGG | 0.483891 | 2.4:-61647383 | MS.gene02886:CDS |
| TGTCCCACTTCAAACTCAAC+AGG | 0.484199 | 2.4:+61647470 | None:intergenic |
| CTGTCAAAGTTGGATCAGCC+TGG | 0.486875 | 2.4:-61646878 | MS.gene02886:CDS |
| TTGATCCCCGTGGGTGGTGA+AGG | 0.486979 | 2.4:+61647377 | None:intergenic |
| AGGATGATGATGATTTGTTT+GGG | 0.488049 | 2.4:-61646758 | MS.gene02886:CDS |
| TCCTCGTAATCAGCAATGCT+TGG | 0.489223 | 2.4:+61646777 | None:intergenic |
| GAATCATTATCTGTCAAAGT+TGG | 0.489351 | 2.4:-61646888 | MS.gene02886:CDS |
| TGTACAGAATTCTTCGACTG+TGG | 0.489814 | 2.4:+61648254 | None:intergenic |
| CAGATAATGATTCTCCATAT+AGG | 0.494590 | 2.4:+61646898 | None:intergenic |
| GGAAGTTATGAAGGATGGTC+AGG | 0.495075 | 2.4:-61648069 | MS.gene02886:CDS |
| TGGAGGCGGCTCCGTTGTTG+GGG | 0.498085 | 2.4:-61648184 | MS.gene02886:CDS |
| AATCAACAGGCAACTCAGAT+TGG | 0.499106 | 2.4:-61648158 | MS.gene02886:CDS |
| TTGGGCGATTGAGCCGCGAC+CGG | 0.501004 | 2.4:-61648105 | MS.gene02886:CDS |
| GGAAAGGGCAGTCCTCTGCT+AGG | 0.502686 | 2.4:-61647013 | MS.gene02886:CDS |
| TACTTGGAAGTTATGAAGGA+TGG | 0.503632 | 2.4:-61648074 | MS.gene02886:CDS |
| GAGGTAGATTCATCCCAAAA+AGG | 0.506021 | 2.4:-61646990 | MS.gene02886:CDS |
| TTCTCAGAAAGGTGTGGGAG+TGG | 0.506673 | 2.4:-61648204 | MS.gene02886:CDS |
| TGTTGCTCAGTCTTCTAGTA+AGG | 0.506725 | 2.4:-61648306 | MS.gene02886:CDS |
| GAAGATGAGAGTTTCATTCA+GGG | 0.508142 | 2.4:-61647180 | MS.gene02886:CDS |
| GAAAGGTGTGGGAGTGGAGG+CGG | 0.508188 | 2.4:-61648198 | MS.gene02886:CDS |
| GTTAAGGAAGGAAGTCTAGT+TGG | 0.508857 | 2.4:-61647077 | MS.gene02886:CDS |
| TGGGCGATTGAGCCGCGACC+GGG | 0.511260 | 2.4:-61648104 | MS.gene02886:CDS |
| TAGTTGGTCATTCTTCGGCT+TGG | 0.516977 | 2.4:-61648283 | MS.gene02886:CDS |
| TGAACGAGCGCCAGCAGCTA+AGG | 0.523991 | 2.4:-61646832 | MS.gene02886:CDS |
| CATCAACATGGTTCTCAGAA+AGG | 0.526028 | 2.4:-61648215 | MS.gene02886:CDS |
| TCATCCGATGGGTCAGGAGG+TGG | 0.527608 | 2.4:+61647347 | None:intergenic |
| CAGTCTTCTAGTAAGGTAGT+TGG | 0.528464 | 2.4:-61648299 | MS.gene02886:CDS |
| GCTAAGGAGAATGGAGAAAG+TGG | 0.536680 | 2.4:-61646816 | MS.gene02886:CDS |
| CTCTCGCCAACATGCTGCGG+TGG | 0.540409 | 2.4:-61647958 | MS.gene02886:CDS |
| GGCTCAATCGCCCAATCTGG+TGG | 0.540495 | 2.4:+61648113 | None:intergenic |
| CCCGTGGGTGGTGAAGGACG+AGG | 0.543398 | 2.4:+61647383 | None:intergenic |
| TCCTGACCCATCGGATGAAG+AGG | 0.544867 | 2.4:-61647342 | MS.gene02886:CDS |
| TCTTAATATGTATAATCTCG+TGG | 0.545734 | 2.4:+61647427 | None:intergenic |
| GAGCTTGGTAGTGCAACAAA+TGG | 0.548432 | 2.4:-61647248 | MS.gene02886:CDS |
| CCCACCACCTCCTGACCCAT+CGG | 0.549380 | 2.4:-61647351 | MS.gene02886:CDS |
| GTTTCATTCAGGGATCAGGT+TGG | 0.560524 | 2.4:-61647170 | MS.gene02886:CDS |
| GAAAGGGCAGTCCTCTGCTA+GGG | 0.561223 | 2.4:-61647012 | MS.gene02886:CDS |
| GCTCGTTCACCACTACTGAC+AGG | 0.562972 | 2.4:+61646846 | None:intergenic |
| CAACAGGCAACTCAGATTGG+TGG | 0.563642 | 2.4:-61648155 | MS.gene02886:CDS |
| CAAACGCTCATTTGCAACAA+AGG | 0.565573 | 2.4:+61647505 | None:intergenic |
| TTCACCTGTTGAGTTTGAAG+TGG | 0.567231 | 2.4:-61647474 | MS.gene02886:CDS |
| ACAACAGCCTCTTCATCCGA+TGG | 0.568113 | 2.4:+61647335 | None:intergenic |
| GGGAAATTGATCCCCGTGGG+TGG | 0.570676 | 2.4:+61647371 | None:intergenic |
| TCACCTGTTGAGTTTGAAGT+GGG | 0.574165 | 2.4:-61647473 | MS.gene02886:CDS |
| GAGGTTGTTGGAATTTCAGA+TGG | 0.576473 | 2.4:-61647134 | MS.gene02886:CDS |
| CAGGCAACTCAGATTGGTGG+AGG | 0.577255 | 2.4:-61648152 | MS.gene02886:CDS |
| CATGGTTCTCAGAAAGGTGT+GGG | 0.580915 | 2.4:-61648209 | MS.gene02886:CDS |
| TGTCTCTCGCCAACATGCTG+CGG | 0.581927 | 2.4:-61647961 | MS.gene02886:CDS |
| ACAAACTACTGTAATTCCAA+AGG | 0.585279 | 2.4:-61647036 | MS.gene02886:CDS |
| GAATTACCATTAACAGAGAA+CGG | 0.587204 | 2.4:+61648341 | None:intergenic |
| TCTAACCTTCCGTTCTTGTG+AGG | 0.588526 | 2.4:+61647933 | None:intergenic |
| ACTGTAATTCCAAAGGGGAA+AGG | 0.588891 | 2.4:-61647029 | MS.gene02886:CDS |
| AGAGAACGGTTCCAAACTCT+CGG | 0.589404 | 2.4:+61648355 | None:intergenic |
| TGTCAAAGTTGGATCAGCCT+GGG | 0.595464 | 2.4:-61646877 | MS.gene02886:CDS |
| AGGGCAGTCCTCTGCTAGGG+AGG | 0.602420 | 2.4:-61647009 | MS.gene02886:CDS |
| GAGGAACCACCGCAGCATGT+TGG | 0.602912 | 2.4:+61647952 | None:intergenic |
| TGGTGGGAAATTGATCCCCG+TGG | 0.605958 | 2.4:+61647367 | None:intergenic |
| TCAGAAAGGTGTGGGAGTGG+AGG | 0.607307 | 2.4:-61648201 | MS.gene02886:CDS |
| TGCAAATGAGCGTTTGACCA+AGG | 0.607826 | 2.4:-61647498 | MS.gene02886:CDS |
| GGTCCAGTTGGTGTTAAGGA+AGG | 0.608986 | 2.4:-61647089 | MS.gene02886:CDS |
| GAAACAGAACCTGGTCCAGT+TGG | 0.609238 | 2.4:-61647101 | MS.gene02886:CDS |
| ACATGGTTCTCAGAAAGGTG+TGG | 0.612081 | 2.4:-61648210 | MS.gene02886:CDS |
| GTGTCCAAATCCACTGAGCT+TGG | 0.614575 | 2.4:-61647263 | MS.gene02886:CDS |
| GCGGTGGTTCCTCACAAGAA+CGG | 0.615525 | 2.4:-61647942 | MS.gene02886:CDS |
| ACTGACAGGTGAGTATGCCC+AGG | 0.616123 | 2.4:+61646860 | None:intergenic |
| CAACAGCCTCTTCATCCGAT+GGG | 0.619090 | 2.4:+61647336 | None:intergenic |
| TCATTCAGGGATCAGGTTGG+GGG | 0.620615 | 2.4:-61647167 | MS.gene02886:CDS |
| TGTTGATTCTGCCCCAACAA+CGG | 0.623282 | 2.4:+61648173 | None:intergenic |
| GCATACTCACCTGTCAGTAG+TGG | 0.625393 | 2.4:-61646855 | MS.gene02886:CDS |
| TGAATCTACCTCCCTAGCAG+AGG | 0.627223 | 2.4:+61647001 | None:intergenic |
| CCGTGGGTGGTGAAGGACGA+GGG | 0.627786 | 2.4:+61647384 | None:intergenic |
| TCCAAGCATTGCTGATTACG+AGG | 0.635210 | 2.4:-61646778 | MS.gene02886:CDS |
| TTGGTGGAGGGCAGTCGATG+TGG | 0.637100 | 2.4:-61648139 | MS.gene02886:CDS |
| ACAGAATTCTTCGACTGTGG+AGG | 0.638226 | 2.4:+61648257 | None:intergenic |
| TCTTCATCCGATGGGTCAGG+AGG | 0.642327 | 2.4:+61647344 | None:intergenic |
| TGGTTCCTCACAAGAACGGA+AGG | 0.642477 | 2.4:-61647938 | MS.gene02886:intron |
| GGTGGGAAATTGATCCCCGT+GGG | 0.643525 | 2.4:+61647368 | None:intergenic |
| CCGATGGGTCAGGAGGTGGT+GGG | 0.653058 | 2.4:+61647351 | None:intergenic |
| TGTTGCACTACCAAGCTCAG+TGG | 0.656951 | 2.4:+61647253 | None:intergenic |
| TTGAAGTGGGACAATCATTG+CGG | 0.662047 | 2.4:-61647460 | MS.gene02886:CDS |
| ATTGATTTGGGATCTGCACA+TGG | 0.667462 | 2.4:-61647530 | MS.gene02886:CDS |
| CTCGTCCTTCACCACCCACG+GGG | 0.671541 | 2.4:-61647382 | MS.gene02886:CDS |
| AGGCAACTCAGATTGGTGGA+GGG | 0.676455 | 2.4:-61648151 | MS.gene02886:CDS |
| TCACAGAATCAACATCAACA+TGG | 0.707104 | 2.4:-61648227 | MS.gene02886:CDS |
| AAACTACTGTAATTCCAAAG+GGG | 0.709535 | 2.4:-61647034 | MS.gene02886:CDS |
| GTAGATGTAGAAACAGAACC+TGG | 0.729040 | 2.4:-61647110 | MS.gene02886:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTCTTATATTATTT+AGG | - | chr2.4:61647533-61647552 | MS.gene02886:CDS | 10.0% |
| !!! | ATTATTTAGAATATGCAATT+CGG | + | chr2.4:61647315-61647334 | None:intergenic | 15.0% |
| !! | AAATGAATTACAAATGACTT+AGG | - | chr2.4:61647471-61647490 | MS.gene02886:CDS | 20.0% |
| !!! | AGTGTATATGTAATTGATTT+GGG | - | chr2.4:61647608-61647627 | MS.gene02886:intron | 20.0% |
| !!! | ATAGACGAAGAAATATTTTT+GGG | - | chr2.4:61647125-61647144 | MS.gene02886:CDS | 20.0% |
| ! | ATTACAACTATAAGTTGCAA+GGG | + | chr2.4:61647569-61647588 | None:intergenic | 25.0% |
| ! | CAGTGTATATGTAATTGATT+TGG | - | chr2.4:61647607-61647626 | MS.gene02886:intron | 25.0% |
| ! | TATTACAACTATAAGTTGCA+AGG | + | chr2.4:61647570-61647589 | None:intergenic | 25.0% |
| ! | TCTTAATATGTATAATCTCG+TGG | + | chr2.4:61647726-61647745 | None:intergenic | 25.0% |
| ! | TTTCGTTTGATAAGGTAATA+TGG | + | chr2.4:61647410-61647429 | None:intergenic | 25.0% |
| !! | GATAGACGAAGAAATATTTT+TGG | - | chr2.4:61647124-61647143 | MS.gene02886:CDS | 25.0% |
| !! | TTTTTACTTGGAAGTTATGA+AGG | - | chr2.4:61647072-61647091 | MS.gene02886:CDS | 25.0% |
| AAACTACTGTAATTCCAAAG+GGG | - | chr2.4:61648116-61648135 | MS.gene02886:CDS | 30.0% | |
| ACAAACTACTGTAATTCCAA+AGG | - | chr2.4:61648114-61648133 | MS.gene02886:CDS | 30.0% | |
| CAAACTACTGTAATTCCAAA+GGG | - | chr2.4:61648115-61648134 | MS.gene02886:CDS | 30.0% | |
| CAGATAATGATTCTCCATAT+AGG | + | chr2.4:61648255-61648274 | None:intergenic | 30.0% | |
| GAATCATTATCTGTCAAAGT+TGG | - | chr2.4:61648262-61648281 | MS.gene02886:CDS | 30.0% | |
| GAATTACCATTAACAGAGAA+CGG | + | chr2.4:61646812-61646831 | None:intergenic | 30.0% | |
| TTGAATGCTTTCGTTTGATA+AGG | + | chr2.4:61647418-61647437 | None:intergenic | 30.0% | |
| ! | TTTATCAGTCACACCTTTTT+GGG | + | chr2.4:61648176-61648195 | None:intergenic | 30.0% |
| !! | AATATGGTGTCATTTGATAC+AGG | + | chr2.4:61647394-61647413 | None:intergenic | 30.0% |
| !! | AGGATGATGATGATTTGTTT+GGG | - | chr2.4:61648392-61648411 | MS.gene02886:CDS | 30.0% |
| ACTTCCAAGTAAAAAACACC+CGG | + | chr2.4:61647067-61647086 | None:intergenic | 35.0% | |
| AGAAGATGAGAGTTTCATTC+AGG | - | chr2.4:61647969-61647988 | MS.gene02886:CDS | 35.0% | |
| AGGTAATAGATGCAAGCTAT+TGG | + | chr2.4:61647374-61647393 | None:intergenic | 35.0% | |
| ATCCATTCCAGTAACATCAA+AGG | + | chr2.4:61647257-61647276 | None:intergenic | 35.0% | |
| GAAGATGAGAGTTTCATTCA+GGG | - | chr2.4:61647970-61647989 | MS.gene02886:CDS | 35.0% | |
| GGTGCTAGATAGGATTAATT+TGG | - | chr2.4:61647102-61647121 | MS.gene02886:CDS | 35.0% | |
| TAAGGTAGTTGGTCATTCTT+CGG | - | chr2.4:61646862-61646881 | MS.gene02886:CDS | 35.0% | |
| TACTTGGAAGTTATGAAGGA+TGG | - | chr2.4:61647076-61647095 | MS.gene02886:CDS | 35.0% | |
| TCACAGAATCAACATCAACA+TGG | - | chr2.4:61646923-61646942 | MS.gene02886:CDS | 35.0% | |
| TGCAACAAATGGCAAAAACA+AGG | - | chr2.4:61647913-61647932 | MS.gene02886:intron | 35.0% | |
| ! | GTTTATCAGTCACACCTTTT+TGG | + | chr2.4:61648177-61648196 | None:intergenic | 35.0% |
| !! | AAAAGCTAAAAGTGCTGAAG+TGG | + | chr2.4:61647499-61647518 | None:intergenic | 35.0% |
| !! | ATCGTAAATCCCAGTTTTAG+CGG | + | chr2.4:61648230-61648249 | None:intergenic | 35.0% |
| !! | GAGGATGATGATGATTTGTT+TGG | - | chr2.4:61648391-61648410 | MS.gene02886:CDS | 35.0% |
| !!! | GACGAAGAAATATTTTTGGG+AGG | - | chr2.4:61647128-61647147 | MS.gene02886:CDS | 35.0% |
| AAACTCAACAGGTGAATCCT+TGG | + | chr2.4:61647672-61647691 | None:intergenic | 40.0% | |
| AATACGCTGCTGAATCGTTA+TGG | - | chr2.4:61647845-61647864 | MS.gene02886:intron | 40.0% | |
| AATCAACAGGCAACTCAGAT+TGG | - | chr2.4:61646992-61647011 | MS.gene02886:CDS | 40.0% | |
| ACTGTAATTCCAAAGGGGAA+AGG | - | chr2.4:61648121-61648140 | MS.gene02886:CDS | 40.0% | |
| ATCAAAAACCCCGCTAAAAC+TGG | - | chr2.4:61648217-61648236 | MS.gene02886:CDS | 40.0% | |
| CAAACGCTCATTTGCAACAA+AGG | + | chr2.4:61647648-61647667 | None:intergenic | 40.0% | |
| CAAGCACAAAATCACAAGTC+TGG | + | chr2.4:61647159-61647178 | None:intergenic | 40.0% | |
| CAGTCTTCTAGTAAGGTAGT+TGG | - | chr2.4:61646851-61646870 | MS.gene02886:CDS | 40.0% | |
| CATCAACATGGTTCTCAGAA+AGG | - | chr2.4:61646935-61646954 | MS.gene02886:CDS | 40.0% | |
| CTCCTTTGATGTTACTGGAA+TGG | - | chr2.4:61647252-61647271 | MS.gene02886:CDS | 40.0% | |
| CTGTAATTCCAAAGGGGAAA+GGG | - | chr2.4:61648122-61648141 | MS.gene02886:CDS | 40.0% | |
| GAGGTAGATTCATCCCAAAA+AGG | - | chr2.4:61648160-61648179 | MS.gene02886:CDS | 40.0% | |
| GAGGTTGTTGGAATTTCAGA+TGG | - | chr2.4:61648016-61648035 | MS.gene02886:CDS | 40.0% | |
| GGGATTTACGATGACCTATA+TGG | - | chr2.4:61648238-61648257 | MS.gene02886:CDS | 40.0% | |
| GTAGATGTAGAAACAGAACC+TGG | - | chr2.4:61648040-61648059 | MS.gene02886:CDS | 40.0% | |
| GTTAAGGAAGGAAGTCTAGT+TGG | - | chr2.4:61648073-61648092 | MS.gene02886:CDS | 40.0% | |
| GTTTAAGAAAGCCGAGAGTT+TGG | - | chr2.4:61646784-61646803 | MS.gene02886:CDS | 40.0% | |
| TCAAAAACCCCGCTAAAACT+GGG | - | chr2.4:61648218-61648237 | MS.gene02886:CDS | 40.0% | |
| TCTCTCTCCTTTGATGTTAC+TGG | - | chr2.4:61647247-61647266 | MS.gene02886:CDS | 40.0% | |
| TCTTAGCAGCTCTTTCTGAT+TGG | + | chr2.4:61647943-61647962 | None:intergenic | 40.0% | |
| TGTACAGAATTCTTCGACTG+TGG | + | chr2.4:61646899-61646918 | None:intergenic | 40.0% | |
| TGTTGCTCAGTCTTCTAGTA+AGG | - | chr2.4:61646844-61646863 | MS.gene02886:CDS | 40.0% | |
| TTCACCTGTTGAGTTTGAAG+TGG | - | chr2.4:61647676-61647695 | MS.gene02886:intron | 40.0% | |
| TTGAAGTGGGACAATCATTG+CGG | - | chr2.4:61647690-61647709 | MS.gene02886:intron | 40.0% | |
| TTGGAACCGTTCTCTGTTAA+TGG | - | chr2.4:61646803-61646822 | MS.gene02886:CDS | 40.0% | |
| TTTCATTCAGGGATCAGGTT+GGG | - | chr2.4:61647981-61648000 | MS.gene02886:CDS | 40.0% | |
| ! | TCACCTGTTGAGTTTGAAGT+GGG | - | chr2.4:61647677-61647696 | MS.gene02886:intron | 40.0% |
| !! | ATTGATTTGGGATCTGCACA+TGG | - | chr2.4:61647620-61647639 | MS.gene02886:intron | 40.0% |
| !! | CGGGGTTTTTGATCTTGTTT+AGG | + | chr2.4:61648210-61648229 | None:intergenic | 40.0% |
| !! | GAAGAACATCTGGTCTTGAT+AGG | - | chr2.4:61646762-61646781 | MS.gene02886:CDS | 40.0% |
| !! | TCGTAAATCCCAGTTTTAGC+GGG | + | chr2.4:61648229-61648248 | None:intergenic | 40.0% |
| AAGTAAAAAACACCCGGTCG+CGG | + | chr2.4:61647061-61647080 | None:intergenic | 45.0% | |
| ACAGAATTCTTCGACTGTGG+AGG | + | chr2.4:61646896-61646915 | None:intergenic | 45.0% | |
| ACATGGTTCTCAGAAAGGTG+TGG | - | chr2.4:61646940-61646959 | MS.gene02886:CDS | 45.0% | |
| AGAGAACGGTTCCAAACTCT+CGG | + | chr2.4:61646798-61646817 | None:intergenic | 45.0% | |
| CTTCCTTCCTTAACACCAAC+TGG | + | chr2.4:61648067-61648086 | None:intergenic | 45.0% | |
| GAGAGTTTCATTCAGGGATC+AGG | - | chr2.4:61647976-61647995 | MS.gene02886:CDS | 45.0% | |
| GCTAAGGAGAATGGAGAAAG+TGG | - | chr2.4:61648334-61648353 | MS.gene02886:CDS | 45.0% | |
| GGAAGTTATGAAGGATGGTC+AGG | - | chr2.4:61647081-61647100 | MS.gene02886:CDS | 45.0% | |
| GGAGAGTTAGTTGAGGTTGT+TGG | - | chr2.4:61648004-61648023 | MS.gene02886:CDS | 45.0% | |
| GTTTCATTCAGGGATCAGGT+TGG | - | chr2.4:61647980-61647999 | MS.gene02886:CDS | 45.0% | |
| TAGTTGGTCATTCTTCGGCT+TGG | - | chr2.4:61646867-61646886 | MS.gene02886:CDS | 45.0% | |
| TCCTCGTAATCAGCAATGCT+TGG | + | chr2.4:61648376-61648395 | None:intergenic | 45.0% | |
| TCTAACCTTCCGTTCTTGTG+AGG | + | chr2.4:61647220-61647239 | None:intergenic | 45.0% | |
| TGCAAATGAGCGTTTGACCA+AGG | - | chr2.4:61647652-61647671 | MS.gene02886:intron | 45.0% | |
| TGTCAAAGTTGGATCAGCCT+GGG | - | chr2.4:61648273-61648292 | MS.gene02886:CDS | 45.0% | |
| TGTCCCACTTCAAACTCAAC+AGG | + | chr2.4:61647683-61647702 | None:intergenic | 45.0% | |
| ! | ACTACCAAGCTCAGTGGATT+TGG | + | chr2.4:61647894-61647913 | None:intergenic | 45.0% |
| ! | CATGGTTCTCAGAAAGGTGT+GGG | - | chr2.4:61646941-61646960 | MS.gene02886:CDS | 45.0% |
| ! | TCCAAGCATTGCTGATTACG+AGG | - | chr2.4:61648372-61648391 | MS.gene02886:CDS | 45.0% |
| ! | TTCATTCAGGGATCAGGTTG+GGG | - | chr2.4:61647982-61648001 | MS.gene02886:CDS | 45.0% |
| !! | CGTAAATCCCAGTTTTAGCG+GGG | + | chr2.4:61648228-61648247 | None:intergenic | 45.0% |
| !! | GAGCTTGGTAGTGCAACAAA+TGG | - | chr2.4:61647902-61647921 | MS.gene02886:intron | 45.0% |
| !! | TGTTGATTCTGCCCCAACAA+CGG | + | chr2.4:61646980-61646999 | None:intergenic | 45.0% |
| ACAACAGCCTCTTCATCCGA+TGG | + | chr2.4:61647818-61647837 | None:intergenic | 50.0% | |
| AGGATGGTCAGGTGCTAGAT+AGG | - | chr2.4:61647092-61647111 | MS.gene02886:CDS | 50.0% | |
| AGGCAACTCAGATTGGTGGA+GGG | - | chr2.4:61646999-61647018 | MS.gene02886:CDS | 50.0% | |
| CAACAGCCTCTTCATCCGAT+GGG | + | chr2.4:61647817-61647836 | None:intergenic | 50.0% | |
| CAACAGGCAACTCAGATTGG+TGG | - | chr2.4:61646995-61647014 | MS.gene02886:CDS | 50.0% | |
| CTGTCAAAGTTGGATCAGCC+TGG | - | chr2.4:61648272-61648291 | MS.gene02886:CDS | 50.0% | |
| GAAACAGAACCTGGTCCAGT+TGG | - | chr2.4:61648049-61648068 | MS.gene02886:CDS | 50.0% | |
| GCATACTCACCTGTCAGTAG+TGG | - | chr2.4:61648295-61648314 | MS.gene02886:CDS | 50.0% | |
| GTGTCCAAATCCACTGAGCT+TGG | - | chr2.4:61647887-61647906 | MS.gene02886:intron | 50.0% | |
| GTTGTTGGGGCAGAATCAAC+AGG | - | chr2.4:61646979-61646998 | MS.gene02886:CDS | 50.0% | |
| TCCTTAACACCAACTGGACC+AGG | + | chr2.4:61648061-61648080 | None:intergenic | 50.0% | |
| TCTCCATTCTCCTTAGCTGC+TGG | + | chr2.4:61648331-61648350 | None:intergenic | 50.0% | |
| TGAATCTACCTCCCTAGCAG+AGG | + | chr2.4:61648152-61648171 | None:intergenic | 50.0% | |
| TGGTTCCTCACAAGAACGGA+AGG | - | chr2.4:61647212-61647231 | MS.gene02886:CDS | 50.0% | |
| TGTTGCACTACCAAGCTCAG+TGG | + | chr2.4:61647900-61647919 | None:intergenic | 50.0% | |
| ! | TTCTCAGAAAGGTGTGGGAG+TGG | - | chr2.4:61646946-61646965 | MS.gene02886:CDS | 50.0% |
| !! | ACCTGGTCCAGTTGGTGTTA+AGG | - | chr2.4:61648057-61648076 | MS.gene02886:CDS | 50.0% |
| !! | GGTCCAGTTGGTGTTAAGGA+AGG | - | chr2.4:61648061-61648080 | MS.gene02886:CDS | 50.0% |
| !! | TCATTCAGGGATCAGGTTGG+GGG | - | chr2.4:61647983-61648002 | MS.gene02886:CDS | 50.0% |
| !!! | GCGACCGGGTGTTTTTTACT+TGG | - | chr2.4:61647060-61647079 | MS.gene02886:CDS | 50.0% |
| ACTGACAGGTGAGTATGCCC+AGG | + | chr2.4:61648293-61648312 | None:intergenic | 55.0% | |
| CAGGCAACTCAGATTGGTGG+AGG | - | chr2.4:61646998-61647017 | MS.gene02886:CDS | 55.0% | |
| GAAAGGGCAGTCCTCTGCTA+GGG | - | chr2.4:61648138-61648157 | MS.gene02886:CDS | 55.0% | |
| GATGTGGCAGCCACCAGATT+GGG | - | chr2.4:61647027-61647046 | MS.gene02886:CDS | 55.0% | |
| GCGGTGGTTCCTCACAAGAA+CGG | - | chr2.4:61647208-61647227 | MS.gene02886:CDS | 55.0% | |
| GCTCGTTCACCACTACTGAC+AGG | + | chr2.4:61648307-61648326 | None:intergenic | 55.0% | |
| GGTGGGAAATTGATCCCCGT+GGG | + | chr2.4:61647785-61647804 | None:intergenic | 55.0% | |
| GGTTGGGGGAGAGTTAGTTG+AGG | - | chr2.4:61647997-61648016 | MS.gene02886:CDS | 55.0% | |
| TCCTGACCCATCGGATGAAG+AGG | - | chr2.4:61647808-61647827 | MS.gene02886:intron | 55.0% | |
| TCTTCATCCGATGGGTCAGG+AGG | + | chr2.4:61647809-61647828 | None:intergenic | 55.0% | |
| TGGTGGGAAATTGATCCCCG+TGG | + | chr2.4:61647786-61647805 | None:intergenic | 55.0% | |
| TGTCTCTCGCCAACATGCTG+CGG | - | chr2.4:61647189-61647208 | MS.gene02886:CDS | 55.0% | |
| ! | TCAGAAAGGTGTGGGAGTGG+AGG | - | chr2.4:61646949-61646968 | MS.gene02886:CDS | 55.0% |
| CGATGTGGCAGCCACCAGAT+TGG | - | chr2.4:61647026-61647045 | MS.gene02886:CDS | 60.0% | |
| GAGGAACCACCGCAGCATGT+TGG | + | chr2.4:61647201-61647220 | None:intergenic | 60.0% | |
| GAGGACTGCCCTTTCCCCTT+TGG | + | chr2.4:61648133-61648152 | None:intergenic | 60.0% | |
| GCCTCTTCATCCGATGGGTC+AGG | + | chr2.4:61647812-61647831 | None:intergenic | 60.0% | |
| GCGCCAGCAGCTAAGGAGAA+TGG | - | chr2.4:61648325-61648344 | MS.gene02886:CDS | 60.0% | |
| GGAAAGGGCAGTCCTCTGCT+AGG | - | chr2.4:61648137-61648156 | MS.gene02886:CDS | 60.0% | |
| GGCTCAATCGCCCAATCTGG+TGG | + | chr2.4:61647040-61647059 | None:intergenic | 60.0% | |
| GGGAAATTGATCCCCGTGGG+TGG | + | chr2.4:61647782-61647801 | None:intergenic | 60.0% | |
| TCATCCGATGGGTCAGGAGG+TGG | + | chr2.4:61647806-61647825 | None:intergenic | 60.0% | |
| TGAACGAGCGCCAGCAGCTA+AGG | - | chr2.4:61648318-61648337 | MS.gene02886:CDS | 60.0% | |
| TTGATCCCCGTGGGTGGTGA+AGG | + | chr2.4:61647776-61647795 | None:intergenic | 60.0% | |
| TTGGTGGAGGGCAGTCGATG+TGG | - | chr2.4:61647011-61647030 | MS.gene02886:CDS | 60.0% | |
| ! | GAAAGGTGTGGGAGTGGAGG+CGG | - | chr2.4:61646952-61646971 | MS.gene02886:CDS | 60.0% |
| AGGGCAGTCCTCTGCTAGGG+AGG | - | chr2.4:61648141-61648160 | MS.gene02886:CDS | 65.0% | |
| AGTGGAGGCGGCTCCGTTGT+TGG | - | chr2.4:61646964-61646983 | MS.gene02886:CDS | 65.0% | |
| CCCACCACCTCCTGACCCAT+CGG | - | chr2.4:61647799-61647818 | MS.gene02886:intron | 65.0% | |
| CCCTCGTCCTTCACCACCCA+CGG | - | chr2.4:61647766-61647785 | MS.gene02886:intron | 65.0% | |
| CCGATGGGTCAGGAGGTGGT+GGG | + | chr2.4:61647802-61647821 | None:intergenic | 65.0% | |
| CCGTGGGTGGTGAAGGACGA+GGG | + | chr2.4:61647769-61647788 | None:intergenic | 65.0% | |
| CCTCGTCCTTCACCACCCAC+GGG | - | chr2.4:61647767-61647786 | MS.gene02886:intron | 65.0% | |
| CGCGGCTCAATCGCCCAATC+TGG | + | chr2.4:61647043-61647062 | None:intergenic | 65.0% | |
| CTCGTCCTTCACCACCCACG+GGG | - | chr2.4:61647768-61647787 | MS.gene02886:intron | 65.0% | |
| CTCTCGCCAACATGCTGCGG+TGG | - | chr2.4:61647192-61647211 | MS.gene02886:CDS | 65.0% | |
| GTGGAGGCGGCTCCGTTGTT+GGG | - | chr2.4:61646965-61646984 | MS.gene02886:CDS | 65.0% | |
| TCCGATGGGTCAGGAGGTGG+TGG | + | chr2.4:61647803-61647822 | None:intergenic | 65.0% | |
| TGGAGGCGGCTCCGTTGTTG+GGG | - | chr2.4:61646966-61646985 | MS.gene02886:CDS | 65.0% | |
| TTGGGCGATTGAGCCGCGAC+CGG | - | chr2.4:61647045-61647064 | MS.gene02886:CDS | 65.0% | |
| CCCGTGGGTGGTGAAGGACG+AGG | + | chr2.4:61647770-61647789 | None:intergenic | 70.0% | |
| TGGGCGATTGAGCCGCGACC+GGG | - | chr2.4:61647046-61647065 | MS.gene02886:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 61646755 | 61648417 | 61646755 | ID=MS.gene02886 |
| chr2.4 | mRNA | 61646755 | 61648417 | 61646755 | ID=MS.gene02886.t1;Parent=MS.gene02886 |
| chr2.4 | exon | 61647939 | 61648417 | 61647939 | ID=MS.gene02886.t1.exon1;Parent=MS.gene02886.t1 |
| chr2.4 | CDS | 61647939 | 61648417 | 61647939 | ID=cds.MS.gene02886.t1;Parent=MS.gene02886.t1 |
| chr2.4 | exon | 61646755 | 61647562 | 61646755 | ID=MS.gene02886.t1.exon2;Parent=MS.gene02886.t1 |
| chr2.4 | CDS | 61646755 | 61647562 | 61646755 | ID=cds.MS.gene02886.t1;Parent=MS.gene02886.t1 |
| Gene Sequence |
| Protein sequence |
