Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029857.t1 | XP_020220731.1 | 84.7 | 727 | 98 | 2 | 1 | 715 | 1 | 726 | 0.00E+00 | 1097 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029857.t1 | Q9M1H3 | 76.2 | 724 | 162 | 4 | 1 | 715 | 1 | 723 | 5.1e-285 | 981.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029857.t1 | A0A1S2XNE6 | 85.8 | 716 | 100 | 2 | 1 | 715 | 1 | 715 | 0.0e+00 | 1091.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029857 | MS.gene69745 | PPI |
| MS.gene029857 | MS.gene31234 | PPI |
| MS.gene029857 | MS.gene25771 | PPI |
| MS.gene029857 | MS.gene050086 | PPI |
| MS.gene029857 | MS.gene70530 | PPI |
| MS.gene029857 | MS.gene044268 | PPI |
| MS.gene029857 | MS.gene054719 | PPI |
| MS.gene029857 | MS.gene028666 | PPI |
| MS.gene029857 | MS.gene98065 | PPI |
| MS.gene029857 | MS.gene40858 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029857.t1 | MTR_8g075040 | 90.909 | 715 | 63 | 2 | 1 | 715 | 54 | 766 | 0.0 | 1239 |
| MS.gene029857.t1 | MTR_7g018380 | 90.782 | 716 | 64 | 2 | 1 | 715 | 1 | 715 | 0.0 | 1235 |
| MS.gene029857.t1 | MTR_1g066620 | 93.214 | 560 | 37 | 1 | 157 | 715 | 2 | 561 | 0.0 | 1063 |
| MS.gene029857.t1 | MTR_3g080970 | 43.286 | 566 | 292 | 10 | 147 | 705 | 167 | 710 | 1.26e-151 | 457 |
| MS.gene029857.t1 | MTR_2g095440 | 41.516 | 554 | 290 | 8 | 153 | 705 | 62 | 582 | 1.65e-143 | 432 |
| MS.gene029857.t1 | MTR_2g095440 | 41.304 | 552 | 290 | 8 | 155 | 705 | 4 | 522 | 1.04e-142 | 428 |
| MS.gene029857.t1 | MTR_2g095440 | 41.455 | 550 | 288 | 8 | 157 | 705 | 12 | 528 | 1.97e-142 | 428 |
| MS.gene029857.t1 | MTR_4g057795 | 41.166 | 566 | 275 | 9 | 153 | 705 | 62 | 582 | 6.05e-141 | 426 |
| MS.gene029857.t1 | MTR_4g057795 | 40.891 | 516 | 247 | 9 | 203 | 705 | 2 | 472 | 1.16e-124 | 380 |
| MS.gene029857.t1 | MTR_3g095010 | 29.561 | 592 | 365 | 14 | 145 | 715 | 96 | 656 | 2.30e-62 | 221 |
| MS.gene029857.t1 | MTR_3g095010 | 26.073 | 303 | 174 | 5 | 155 | 457 | 433 | 685 | 1.39e-21 | 100 |
| MS.gene029857.t1 | MTR_6g011680 | 32.314 | 229 | 116 | 11 | 488 | 691 | 1008 | 1222 | 6.59e-13 | 73.2 |
| MS.gene029857.t1 | MTR_8g022270 | 28.696 | 230 | 123 | 8 | 488 | 691 | 598 | 812 | 7.66e-13 | 72.8 |
| MS.gene029857.t1 | MTR_7g102070 | 28.390 | 236 | 128 | 8 | 482 | 691 | 420 | 640 | 1.25e-12 | 72.0 |
| MS.gene029857.t1 | MTR_1g063170 | 29.858 | 211 | 113 | 7 | 482 | 666 | 393 | 594 | 1.39e-12 | 72.0 |
| MS.gene029857.t1 | MTR_4g124050 | 28.814 | 236 | 106 | 9 | 493 | 691 | 1055 | 1265 | 2.92e-12 | 70.9 |
| MS.gene029857.t1 | MTR_3g107800 | 29.661 | 236 | 104 | 9 | 493 | 691 | 1031 | 1241 | 3.14e-12 | 70.9 |
| MS.gene029857.t1 | MTR_5g029750 | 27.193 | 228 | 129 | 9 | 488 | 691 | 989 | 1203 | 1.40e-11 | 68.6 |
| MS.gene029857.t1 | MTR_7g079540 | 36.025 | 161 | 79 | 6 | 505 | 643 | 101 | 259 | 5.81e-11 | 64.7 |
| MS.gene029857.t1 | MTR_7g079540 | 36.025 | 161 | 79 | 6 | 505 | 643 | 101 | 259 | 9.47e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029857.t1 | AT3G54540 | 76.204 | 727 | 157 | 5 | 1 | 715 | 1 | 723 | 0.0 | 1101 |
| MS.gene029857.t1 | AT3G54540 | 76.204 | 727 | 157 | 5 | 1 | 715 | 1 | 723 | 0.0 | 1101 |
| MS.gene029857.t1 | AT1G64550 | 43.937 | 569 | 289 | 11 | 145 | 705 | 165 | 711 | 3.72e-150 | 454 |
| MS.gene029857.t1 | AT5G60790 | 41.081 | 555 | 291 | 8 | 153 | 705 | 67 | 587 | 1.02e-139 | 423 |
| MS.gene029857.t1 | AT5G64840 | 28.571 | 567 | 371 | 9 | 146 | 703 | 89 | 630 | 4.32e-63 | 223 |
| MS.gene029857.t1 | AT5G09930 | 29.072 | 571 | 365 | 12 | 145 | 703 | 74 | 616 | 6.59e-60 | 214 |
| MS.gene029857.t1 | AT5G09930 | 27.244 | 312 | 152 | 6 | 155 | 454 | 411 | 659 | 6.78e-20 | 95.1 |
| MS.gene029857.t1 | AT3G28390 | 29.956 | 227 | 116 | 9 | 493 | 691 | 985 | 1196 | 3.73e-12 | 70.5 |
| MS.gene029857.t1 | AT2G36910 | 29.612 | 206 | 110 | 7 | 487 | 666 | 367 | 563 | 4.33e-12 | 70.5 |
| MS.gene029857.t1 | AT3G28345 | 29.808 | 208 | 121 | 7 | 481 | 666 | 988 | 1192 | 7.87e-12 | 69.7 |
| MS.gene029857.t1 | AT3G28860 | 31.818 | 220 | 119 | 9 | 493 | 691 | 1015 | 1224 | 9.04e-12 | 69.3 |
| MS.gene029857.t1 | AT2G47000 | 29.344 | 259 | 117 | 10 | 488 | 710 | 1042 | 1270 | 1.07e-11 | 69.3 |
| MS.gene029857.t1 | AT2G47000 | 29.344 | 259 | 117 | 10 | 488 | 710 | 1042 | 1270 | 1.07e-11 | 69.3 |
| MS.gene029857.t1 | AT2G47000 | 29.344 | 259 | 117 | 10 | 488 | 710 | 1042 | 1270 | 1.07e-11 | 69.3 |
| MS.gene029857.t1 | AT1G67940 | 31.754 | 211 | 102 | 9 | 166 | 367 | 41 | 218 | 1.33e-11 | 66.2 |
| MS.gene029857.t1 | AT3G62150 | 27.917 | 240 | 113 | 9 | 488 | 691 | 1052 | 1267 | 4.14e-11 | 67.4 |
| MS.gene029857.t1 | AT3G62150 | 27.917 | 240 | 113 | 9 | 488 | 691 | 1052 | 1267 | 4.14e-11 | 67.4 |
| MS.gene029857.t1 | AT3G62150 | 27.917 | 240 | 113 | 9 | 488 | 691 | 1052 | 1267 | 4.14e-11 | 67.4 |
| MS.gene029857.t1 | AT1G70610 | 32.184 | 174 | 102 | 4 | 488 | 646 | 455 | 627 | 4.86e-11 | 66.6 |
| MS.gene029857.t1 | AT1G70610 | 32.184 | 174 | 102 | 4 | 488 | 646 | 274 | 446 | 6.34e-11 | 65.9 |
Find 165 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGCAAAACTTGGTAAATT+TGG | 0.116784 | 1.4:-53356338 | MS.gene029857:CDS |
| CTCTGCCATGTTAGCAAGTA+TGG | 0.253861 | 1.4:-53358022 | MS.gene029857:CDS |
| AGCTGCCCATTTGGCTGAAC+AGG | 0.276829 | 1.4:-53357779 | MS.gene029857:CDS |
| ATGAAGAACGGAGTCAAATA+TGG | 0.280825 | 1.4:-53356082 | MS.gene029857:CDS |
| AGAAATTGAAAGCAGCTAAA+AGG | 0.323101 | 1.4:-53356862 | MS.gene029857:CDS |
| TCTTTGCCTGTTCAGCCAAA+TGG | 0.324070 | 1.4:+53357773 | None:intergenic |
| TGTTGATGTTGGCATTGATA+TGG | 0.325155 | 1.4:-53356591 | MS.gene029857:CDS |
| GTCTGAAATCCTCCCGGTTT+GGG | 0.332518 | 1.4:+53356621 | None:intergenic |
| TAAGAATATTGACGTCCTTC+TGG | 0.334816 | 1.4:-53357488 | MS.gene029857:CDS |
| GTGCAAAACTTGGTAAATTT+GGG | 0.337873 | 1.4:-53356337 | MS.gene029857:CDS |
| ATATCTTCTAGCTGGTGATT+TGG | 0.356211 | 1.4:-53356516 | MS.gene029857:CDS |
| TTGTAATCCTCAAATGTTCC+AGG | 0.358592 | 1.4:+53356029 | None:intergenic |
| ACTTGTGTGGTACCTCTACT+TGG | 0.360096 | 1.4:+53356732 | None:intergenic |
| ACTCCCATTGTCAAACTATC+AGG | 0.364911 | 1.4:-53356293 | MS.gene029857:CDS |
| ACCCACAAATCATCTGGATA+TGG | 0.365374 | 1.4:-53356201 | MS.gene029857:CDS |
| GTTGCCATTGTTGGGCCTAA+TGG | 0.366354 | 1.4:-53356560 | MS.gene029857:CDS |
| CTTTGCCTGTTCAGCCAAAT+GGG | 0.383181 | 1.4:+53357774 | None:intergenic |
| AGAAGGACGTCAATATTCTT+AGG | 0.383693 | 1.4:+53357490 | None:intergenic |
| GGGACTCGTGTTGCCATTGT+TGG | 0.395294 | 1.4:-53356569 | MS.gene029857:CDS |
| TTGACTTTCCCATTCCATTC+GGG | 0.395555 | 1.4:+53357551 | None:intergenic |
| GTTGACTTTCCCATTCCATT+CGG | 0.398483 | 1.4:+53357550 | None:intergenic |
| TTGACCTGAGGGCTGTTCTC+TGG | 0.403120 | 1.4:-53357084 | MS.gene029857:CDS |
| AGTCGGGCTTTGGTTCTTGA+TGG | 0.407371 | 1.4:-53357703 | MS.gene029857:CDS |
| TGTCATCCCAAGTCGGGCTT+TGG | 0.407674 | 1.4:-53357713 | MS.gene029857:CDS |
| TCCATATCCAGATGATTTGT+GGG | 0.411181 | 1.4:+53356200 | None:intergenic |
| GATCTACAAAATGCAGCTTC+AGG | 0.411979 | 1.4:-53357373 | MS.gene029857:CDS |
| TTACTAAGTCCCTCCTGGTC+TGG | 0.421538 | 1.4:+53356374 | None:intergenic |
| TGAGCTTTAGCTACCCAAAC+CGG | 0.421726 | 1.4:-53356634 | MS.gene029857:CDS |
| CATGGTTTAGCCTTTGTAGA+TGG | 0.422109 | 1.4:+53358081 | None:intergenic |
| CTTCGAAGTTCACCTTCACT+TGG | 0.427699 | 1.4:+53356491 | None:intergenic |
| ATTTCAAACTTCATTTCTAT+CGG | 0.428855 | 1.4:-53356961 | MS.gene029857:CDS |
| AGTCTGAAATCCTCCCGGTT+TGG | 0.430408 | 1.4:+53356620 | None:intergenic |
| TTCCATATCCAGATGATTTG+TGG | 0.432684 | 1.4:+53356199 | None:intergenic |
| TTTCAAACTTCATTTCTATC+GGG | 0.433047 | 1.4:-53356960 | MS.gene029857:CDS |
| GAGATATTCCCAACACTTTG+TGG | 0.436079 | 1.4:-53356447 | MS.gene029857:CDS |
| AGCATCGAAAAGCAAAAGTA+AGG | 0.436628 | 1.4:-53356777 | MS.gene029857:CDS |
| GAAGTCAGAAATTGAGGATA+GGG | 0.438140 | 1.4:-53356469 | MS.gene029857:CDS |
| TCATGGAAAACGGTATGGTT+TGG | 0.441052 | 1.4:-53357578 | MS.gene029857:CDS |
| TAATGTTGTCATCCCAAGTC+GGG | 0.442342 | 1.4:-53357719 | MS.gene029857:CDS |
| GCAAAGAAAGAAGCTCTTAG+AGG | 0.450601 | 1.4:-53357757 | MS.gene029857:CDS |
| TCCCTCTGATGATGATGAAT+CGG | 0.452332 | 1.4:-53357899 | MS.gene029857:CDS |
| GTGTTTCATCCATTGTTAGT+AGG | 0.453766 | 1.4:+53356423 | None:intergenic |
| TATGCAGAAGCTTTCGGAGC+AGG | 0.454924 | 1.4:+53357943 | None:intergenic |
| CAGCAGCATCAGACCCCATC+AGG | 0.463191 | 1.4:+53357269 | None:intergenic |
| AGATGAACCCACAAATCATC+TGG | 0.463680 | 1.4:-53356207 | MS.gene029857:CDS |
| GTTGATGTTGGCATTGATAT+GGG | 0.466393 | 1.4:-53356590 | MS.gene029857:CDS |
| GGTGTGAGCTCTGTAGGTTC+AGG | 0.469356 | 1.4:+53356680 | None:intergenic |
| CTGGTTGAGCAGGAGGTAGT+TGG | 0.476330 | 1.4:-53357469 | MS.gene029857:CDS |
| TAGTAGGTCCACAAAGTGTT+GGG | 0.476791 | 1.4:+53356439 | None:intergenic |
| TGACGTCCTTCTGGTTGAGC+AGG | 0.476988 | 1.4:-53357479 | MS.gene029857:CDS |
| GTCCTACAAAATCCTTTAGT+GGG | 0.477264 | 1.4:-53357189 | MS.gene029857:CDS |
| AAATTTCCCTGGAACATTTG+AGG | 0.478395 | 1.4:-53356036 | MS.gene029857:CDS |
| TATCAGGAGGGCAGAAAGCT+CGG | 0.480167 | 1.4:-53356277 | MS.gene029857:CDS |
| TTGGTTGGCCCGAATGGAAT+GGG | 0.482720 | 1.4:-53357559 | MS.gene029857:CDS |
| GCGGGTGGGAACAACGTTGT+AGG | 0.488336 | 1.4:-53356916 | MS.gene029857:CDS |
| CTTGCTTACTAAGTCCCTCC+TGG | 0.488701 | 1.4:+53356369 | None:intergenic |
| ATTGATTTCACGTGTGTGTA+AGG | 0.490491 | 1.4:-53356105 | MS.gene029857:CDS |
| GAGGCTGTCCGTGCAAAACT+TGG | 0.491172 | 1.4:-53356347 | MS.gene029857:CDS |
| CAAATATGGGTTGTTGAAGA+TGG | 0.492000 | 1.4:-53356068 | MS.gene029857:CDS |
| ATCAGGAGGGCAGAAAGCTC+GGG | 0.492201 | 1.4:-53356276 | MS.gene029857:CDS |
| TGTCCTACAAAATCCTTTAG+TGG | 0.493667 | 1.4:-53357190 | MS.gene029857:CDS |
| CCTCAGGTCAAGATGATTAG+TGG | 0.497140 | 1.4:+53357096 | None:intergenic |
| AGATGATACTAATGAGGAAG+AGG | 0.497593 | 1.4:-53357332 | MS.gene029857:CDS |
| TTCGAAGAAGTCAGAAATTG+AGG | 0.499370 | 1.4:-53356475 | MS.gene029857:CDS |
| GGACTCGTGTTGCCATTGTT+GGG | 0.501610 | 1.4:-53356568 | MS.gene029857:CDS |
| ACGTCAATATTCTTAGGTAC+TGG | 0.501876 | 1.4:+53357496 | None:intergenic |
| TATGGTTTGGTTGGCCCGAA+TGG | 0.501890 | 1.4:-53357565 | MS.gene029857:CDS |
| AGACTCTCAGATGTTGATGT+TGG | 0.502794 | 1.4:-53356602 | MS.gene029857:CDS |
| AGAAGTCAGAAATTGAGGAT+AGG | 0.504671 | 1.4:-53356470 | MS.gene029857:CDS |
| TAGTAAAGATGTTTCTAAGA+AGG | 0.504745 | 1.4:-53358058 | MS.gene029857:CDS |
| TCAAGAACCAAAGCCCGACT+TGG | 0.505660 | 1.4:+53357706 | None:intergenic |
| TTAGTAGGTCCACAAAGTGT+TGG | 0.510313 | 1.4:+53356438 | None:intergenic |
| TAGAAGAGTACTTGTGTCGC+TGG | 0.512213 | 1.4:-53357060 | MS.gene029857:CDS |
| AGGAGCATGAGCAAAGACAT+AGG | 0.514702 | 1.4:-53357873 | MS.gene029857:CDS |
| GTTTGACAATGGGAGTAAGA+TGG | 0.515153 | 1.4:+53356300 | None:intergenic |
| TGAAGATATCTCATGGAAAA+CGG | 0.518295 | 1.4:-53357588 | MS.gene029857:CDS |
| AGTGGCGGTGTGAGCTCTGT+AGG | 0.518413 | 1.4:+53356674 | None:intergenic |
| TCAGTGTATGCAGAAGCTTT+CGG | 0.518649 | 1.4:+53357937 | None:intergenic |
| TTGAAAGCAGCTAAAAGGAC+TGG | 0.519209 | 1.4:-53356857 | MS.gene029857:CDS |
| AGACGAAGAAGGTACTGAAC+AGG | 0.519926 | 1.4:+53356401 | None:intergenic |
| AATGCAGCTTCAGGTGAAGA+AGG | 0.521065 | 1.4:-53357364 | MS.gene029857:CDS |
| CGGGTGGGAACAACGTTGTA+GGG | 0.523970 | 1.4:-53356915 | MS.gene029857:CDS |
| CGTCCTTCTGGTTGAGCAGG+AGG | 0.524087 | 1.4:-53357476 | MS.gene029857:CDS |
| ACTAATGAGGAAGAGGATGC+AGG | 0.525358 | 1.4:-53357325 | MS.gene029857:CDS |
| TCTTCGTCTGCATCCAGACC+AGG | 0.526284 | 1.4:-53356387 | MS.gene029857:CDS |
| GCTCTGTAGGTTCAGGAAAG+TGG | 0.529343 | 1.4:+53356687 | None:intergenic |
| ATTGTTGGGCCTAATGGTGC+TGG | 0.529640 | 1.4:-53356554 | MS.gene029857:CDS |
| GGAAAACGGTATGGTTTGGT+TGG | 0.532511 | 1.4:-53357574 | MS.gene029857:CDS |
| TGGAACATTTGAGGATTACA+AGG | 0.541220 | 1.4:-53356027 | MS.gene029857:CDS |
| TTTGGTTGGCCCGAATGGAA+TGG | 0.541464 | 1.4:-53357560 | MS.gene029857:CDS |
| TTCAACATTAGCTGAAACAA+CGG | 0.543598 | 1.4:+53357423 | None:intergenic |
| GTATGAACAATTACACCTGA+TGG | 0.543906 | 1.4:-53357284 | MS.gene029857:CDS |
| CCCTCCTGATAGTTTGACAA+TGG | 0.544696 | 1.4:+53356289 | None:intergenic |
| TTCAAACTTCATTTCTATCG+GGG | 0.545830 | 1.4:-53356959 | MS.gene029857:CDS |
| AGCTAAAAGGACTGGAGACA+AGG | 0.547150 | 1.4:-53356849 | MS.gene029857:CDS |
| TATGAACAATTACACCTGAT+GGG | 0.547968 | 1.4:-53357283 | MS.gene029857:CDS |
| CCTCCTGATAGTTTGACAAT+GGG | 0.549798 | 1.4:+53356290 | None:intergenic |
| TGAAGAACGGAGTCAAATAT+GGG | 0.553289 | 1.4:-53356081 | MS.gene029857:CDS |
| GGGAAAGTTTGATGAGGATG+AGG | 0.553303 | 1.4:-53356756 | MS.gene029857:CDS |
| GCATCAGTGAAGATATCTCA+TGG | 0.554022 | 1.4:-53357595 | MS.gene029857:CDS |
| GGAGCATGAGCAAAGACATA+GGG | 0.554124 | 1.4:-53357872 | MS.gene029857:CDS |
| TTAGAAACATCTTTACTACA+TGG | 0.554327 | 1.4:+53358063 | None:intergenic |
| ATATCTCATGGAAAACGGTA+TGG | 0.560689 | 1.4:-53357583 | MS.gene029857:CDS |
| TGATGATGATGAATCGGAAG+AGG | 0.561420 | 1.4:-53357893 | MS.gene029857:CDS |
| CATCTGGATATGGAAAGTAT+TGG | 0.561515 | 1.4:-53356191 | MS.gene029857:CDS |
| ACACTTCTATATCTTCTAGC+TGG | 0.562450 | 1.4:-53356524 | MS.gene029857:CDS |
| CAAGAACCAAAGCCCGACTT+GGG | 0.562585 | 1.4:+53357707 | None:intergenic |
| CACTAATCATCTTGACCTGA+GGG | 0.565689 | 1.4:-53357095 | MS.gene029857:CDS |
| CTTTGTGGACCTACTAACAA+TGG | 0.566897 | 1.4:-53356432 | MS.gene029857:CDS |
| AGACAAGGCTCAACAAGATA+AGG | 0.569772 | 1.4:-53356834 | MS.gene029857:CDS |
| TTAATGTTGTCATCCCAAGT+CGG | 0.570270 | 1.4:-53357720 | MS.gene029857:CDS |
| GATGCACTGCATAAATTCAC+CGG | 0.574833 | 1.4:-53356158 | MS.gene029857:CDS |
| CTGAGAGTCTGAAATCCTCC+CGG | 0.576382 | 1.4:+53356615 | None:intergenic |
| GTGTCGCTGGAAGAAAACTT+TGG | 0.577100 | 1.4:-53357047 | MS.gene029857:CDS |
| TATGGAAAGTATTGGTGCAT+TGG | 0.577172 | 1.4:-53356183 | MS.gene029857:CDS |
| TCTCAGAGCATACTGTATTG+AGG | 0.578071 | 1.4:+53356999 | None:intergenic |
| GCATCGAAAAGCAAAAGTAA+GGG | 0.580770 | 1.4:-53356776 | MS.gene029857:CDS |
| TTCATCCATACTTGCTAACA+TGG | 0.581588 | 1.4:+53358017 | None:intergenic |
| CTAACCAGAGAACAGCCCTC+AGG | 0.582718 | 1.4:+53357080 | None:intergenic |
| CTTGTGTGGTACCTCTACTT+GGG | 0.584462 | 1.4:+53356733 | None:intergenic |
| GAGCTTTAGCTACCCAAACC+GGG | 0.590884 | 1.4:-53356633 | MS.gene029857:CDS |
| TCATCTAACAATAAAATGTG+AGG | 0.596826 | 1.4:+53356224 | None:intergenic |
| CTCAGGTCAAGATGATTAGT+GGG | 0.599587 | 1.4:+53357097 | None:intergenic |
| ACTTCAATAAGCTGCAGAAG+TGG | 0.601176 | 1.4:+53356656 | None:intergenic |
| GGCTCAACAAGATAAGGTGA+AGG | 0.604308 | 1.4:-53356828 | MS.gene029857:CDS |
| TCCTACAAAATCCTTTAGTG+GGG | 0.604851 | 1.4:-53357188 | MS.gene029857:CDS |
| TTGATGTTGGCATTGATATG+GGG | 0.604870 | 1.4:-53356589 | MS.gene029857:CDS |
| TCATCGAGCAATAATAGAGT+GGG | 0.608704 | 1.4:+53357121 | None:intergenic |
| TTCCGATTCATCATCATCAG+AGG | 0.609922 | 1.4:+53357897 | None:intergenic |
| GGTGATTTGGTTCCAAGTGA+AGG | 0.610276 | 1.4:-53356503 | MS.gene029857:CDS |
| GGTACTGTAAGAAATTTCCC+TGG | 0.610293 | 1.4:-53356047 | MS.gene029857:CDS |
| TCCGATTCATCATCATCAGA+GGG | 0.611392 | 1.4:+53357898 | None:intergenic |
| GGAGTAAGATGGTTATGACT+AGG | 0.612089 | 1.4:+53356311 | None:intergenic |
| CTGTAGTCTCTATACTTGTG+TGG | 0.612896 | 1.4:+53356719 | None:intergenic |
| TGTAATCCTCAAATGTTCCA+GGG | 0.613886 | 1.4:+53356030 | None:intergenic |
| TTCATCGAGCAATAATAGAG+TGG | 0.615022 | 1.4:+53357120 | None:intergenic |
| CCCATTGTCAAACTATCAGG+AGG | 0.616830 | 1.4:-53356290 | MS.gene029857:CDS |
| GGAGGTAAATAAGAACTATG+AGG | 0.617027 | 1.4:-53356894 | MS.gene029857:CDS |
| AGATAAAGATGATACTAATG+AGG | 0.617215 | 1.4:-53357338 | MS.gene029857:CDS |
| TCGCTGGAAGAAAACTTTGG+TGG | 0.617745 | 1.4:-53357044 | MS.gene029857:CDS |
| TCAGCAATAGACACCTCAAG+TGG | 0.621486 | 1.4:+53357838 | None:intergenic |
| GGAGGGACTTAGTAAGCAAG+AGG | 0.623814 | 1.4:-53356366 | MS.gene029857:CDS |
| TTGGTTCTTGATGGAGACGA+TGG | 0.625464 | 1.4:-53357694 | MS.gene029857:CDS |
| GGTCTGGATGCAGACGAAGA+AGG | 0.626289 | 1.4:+53356390 | None:intergenic |
| CCACTAATCATCTTGACCTG+AGG | 0.627165 | 1.4:-53357096 | MS.gene029857:CDS |
| ATGAACAATTACACCTGATG+GGG | 0.627362 | 1.4:-53357282 | MS.gene029857:CDS |
| GGCTGATGTTAAGCCACTTG+AGG | 0.627689 | 1.4:-53357851 | MS.gene029857:CDS |
| CTACCTCCTGCTCAACCAGA+AGG | 0.630434 | 1.4:+53357473 | None:intergenic |
| TGAGGATGAGGCCCAAGTAG+AGG | 0.632111 | 1.4:-53356744 | MS.gene029857:CDS |
| TCAATAAGCTGCAGAAGTGG+CGG | 0.634944 | 1.4:+53356659 | None:intergenic |
| AGCACCATTAGGCCCAACAA+TGG | 0.640352 | 1.4:+53356556 | None:intergenic |
| GTGGGAACAACGTTGTAGGG+AGG | 0.657576 | 1.4:-53356912 | MS.gene029857:CDS |
| AGGAGGGCAGAAAGCTCGGG+TGG | 0.658600 | 1.4:-53356273 | MS.gene029857:CDS |
| ACTAACAAGAACAACTCCAC+CGG | 0.661104 | 1.4:+53356139 | None:intergenic |
| CCTACAAAATCCTTTAGTGG+GGG | 0.666533 | 1.4:-53357187 | MS.gene029857:CDS |
| AAGTAAGGGAAAGTTTGATG+AGG | 0.667604 | 1.4:-53356762 | MS.gene029857:CDS |
| AAATTCAGGACCATCTACAA+AGG | 0.671725 | 1.4:-53358091 | MS.gene029857:CDS |
| CGTCTGCATCCAGACCAGGA+GGG | 0.678505 | 1.4:-53356383 | MS.gene029857:CDS |
| TCGTCTGCATCCAGACCAGG+AGG | 0.681595 | 1.4:-53356384 | MS.gene029857:CDS |
| CCATTGTCAAACTATCAGGA+GGG | 0.685258 | 1.4:-53356289 | MS.gene029857:CDS |
| GTGTGTGTAAGGATGAAGAA+CGG | 0.687698 | 1.4:-53356094 | MS.gene029857:CDS |
| GCACTGCATAAATTCACCGG+TGG | 0.691518 | 1.4:-53356155 | MS.gene029857:CDS |
| GATTCATCATCATCAGAGGG+AGG | 0.699607 | 1.4:+53357901 | None:intergenic |
| CTTTAGCTACCCAAACCGGG+AGG | 0.713201 | 1.4:-53356630 | MS.gene029857:CDS |
| CAAGTATAGAGACTACAGCG+TGG | 0.794408 | 1.4:-53356714 | MS.gene029857:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAACTTCATTTCTAT+CGG | - | chr1.4:53357136-53357155 | MS.gene029857:CDS | 20.0% |
| !!! | AATTATGATGCTTTTAAAAG+CGG | - | chr1.4:53357162-53357181 | MS.gene029857:CDS | 20.0% |
| ! | AAGAAAAAGTCAGAAAATTC+AGG | - | chr1.4:53355992-53356011 | MS.gene029857:CDS | 25.0% |
| ! | AGATAAAGATGATACTAATG+AGG | - | chr1.4:53356759-53356778 | MS.gene029857:CDS | 25.0% |
| ! | TCATCTAACAATAAAATGTG+AGG | + | chr1.4:53357876-53357895 | None:intergenic | 25.0% |
| ! | TTAGAAACATCTTTACTACA+TGG | + | chr1.4:53356037-53356056 | None:intergenic | 25.0% |
| ! | TTTCAAACTTCATTTCTATC+GGG | - | chr1.4:53357137-53357156 | MS.gene029857:CDS | 25.0% |
| !! | TAGTAAAGATGTTTCTAAGA+AGG | - | chr1.4:53356039-53356058 | MS.gene029857:CDS | 25.0% |
| !!! | ATTATGATGCTTTTAAAAGC+GGG | - | chr1.4:53357163-53357182 | MS.gene029857:CDS | 25.0% |
| !!! | TTCGAAGAAGATACTTTTTT+AGG | + | chr1.4:53356118-53356137 | None:intergenic | 25.0% |
| AGAAATTGAAAGCAGCTAAA+AGG | - | chr1.4:53357235-53357254 | MS.gene029857:CDS | 30.0% | |
| GTGCAAAACTTGGTAAATTT+GGG | - | chr1.4:53357760-53357779 | MS.gene029857:CDS | 30.0% | |
| TATGAACAATTACACCTGAT+GGG | - | chr1.4:53356814-53356833 | MS.gene029857:CDS | 30.0% | |
| TGAAGATATCTCATGGAAAA+CGG | - | chr1.4:53356509-53356528 | MS.gene029857:CDS | 30.0% | |
| TTCAAACTTCATTTCTATCG+GGG | - | chr1.4:53357138-53357157 | MS.gene029857:CDS | 30.0% | |
| TTCAACATTAGCTGAAACAA+CGG | + | chr1.4:53356677-53356696 | None:intergenic | 30.0% | |
| ! | CAAATTTACCAAGTTTTGCA+CGG | + | chr1.4:53357761-53357780 | None:intergenic | 30.0% |
| !! | TAAAATGTGAGGTTTTGACA+TGG | + | chr1.4:53357865-53357884 | None:intergenic | 30.0% |
| !!! | ATCAAAGATTTTAGCTGGTT+TGG | - | chr1.4:53356861-53356880 | MS.gene029857:CDS | 30.0% |
| !!! | TCAAAGATTTTAGCTGGTTT+GGG | - | chr1.4:53356862-53356881 | MS.gene029857:CDS | 30.0% |
| AAATTCAGGACCATCTACAA+AGG | - | chr1.4:53356006-53356025 | MS.gene029857:CDS | 35.0% | |
| AAATTTCCCTGGAACATTTG+AGG | - | chr1.4:53358061-53358080 | MS.gene029857:CDS | 35.0% | |
| AAGTAAGGGAAAGTTTGATG+AGG | - | chr1.4:53357335-53357354 | MS.gene029857:CDS | 35.0% | |
| ACACTTCTATATCTTCTAGC+TGG | - | chr1.4:53357573-53357592 | MS.gene029857:CDS | 35.0% | |
| ACGTCAATATTCTTAGGTAC+TGG | + | chr1.4:53356604-53356623 | None:intergenic | 35.0% | |
| AGAAGGACGTCAATATTCTT+AGG | + | chr1.4:53356610-53356629 | None:intergenic | 35.0% | |
| AGAAGTCAGAAATTGAGGAT+AGG | - | chr1.4:53357627-53357646 | MS.gene029857:CDS | 35.0% | |
| AGATGATACTAATGAGGAAG+AGG | - | chr1.4:53356765-53356784 | MS.gene029857:CDS | 35.0% | |
| ATATCTCATGGAAAACGGTA+TGG | - | chr1.4:53356514-53356533 | MS.gene029857:CDS | 35.0% | |
| ATGAACAATTACACCTGATG+GGG | - | chr1.4:53356815-53356834 | MS.gene029857:CDS | 35.0% | |
| ATGAAGAACGGAGTCAAATA+TGG | - | chr1.4:53358015-53358034 | MS.gene029857:CDS | 35.0% | |
| CGTGCAAAACTTGGTAAATT+TGG | - | chr1.4:53357759-53357778 | MS.gene029857:CDS | 35.0% | |
| GAAGTCAGAAATTGAGGATA+GGG | - | chr1.4:53357628-53357647 | MS.gene029857:CDS | 35.0% | |
| GCATCGAAAAGCAAAAGTAA+GGG | - | chr1.4:53357321-53357340 | MS.gene029857:CDS | 35.0% | |
| GGAGGTAAATAAGAACTATG+AGG | - | chr1.4:53357203-53357222 | MS.gene029857:CDS | 35.0% | |
| GTATGAACAATTACACCTGA+TGG | - | chr1.4:53356813-53356832 | MS.gene029857:CDS | 35.0% | |
| GTCCTACAAAATCCTTTAGT+GGG | - | chr1.4:53356908-53356927 | MS.gene029857:CDS | 35.0% | |
| GTGTTTCATCCATTGTTAGT+AGG | + | chr1.4:53357677-53357696 | None:intergenic | 35.0% | |
| TAAGAATATTGACGTCCTTC+TGG | - | chr1.4:53356609-53356628 | MS.gene029857:CDS | 35.0% | |
| TCATCGAGCAATAATAGAGT+GGG | + | chr1.4:53356979-53356998 | None:intergenic | 35.0% | |
| TCCTACAAAATCCTTTAGTG+GGG | - | chr1.4:53356909-53356928 | MS.gene029857:CDS | 35.0% | |
| TGAAGAACGGAGTCAAATAT+GGG | - | chr1.4:53358016-53358035 | MS.gene029857:CDS | 35.0% | |
| TGGAACATTTGAGGATTACA+AGG | - | chr1.4:53358070-53358089 | MS.gene029857:CDS | 35.0% | |
| TGTAATCCTCAAATGTTCCA+GGG | + | chr1.4:53358070-53358089 | None:intergenic | 35.0% | |
| TGTCCTACAAAATCCTTTAG+TGG | - | chr1.4:53356907-53356926 | MS.gene029857:CDS | 35.0% | |
| TTAATGTTGTCATCCCAAGT+CGG | - | chr1.4:53356377-53356396 | MS.gene029857:CDS | 35.0% | |
| TTCATCGAGCAATAATAGAG+TGG | + | chr1.4:53356980-53356999 | None:intergenic | 35.0% | |
| TTCCATATCCAGATGATTTG+TGG | + | chr1.4:53357901-53357920 | None:intergenic | 35.0% | |
| TTCGAAGAAGTCAGAAATTG+AGG | - | chr1.4:53357622-53357641 | MS.gene029857:CDS | 35.0% | |
| TTGTAATCCTCAAATGTTCC+AGG | + | chr1.4:53358071-53358090 | None:intergenic | 35.0% | |
| ! | AGCATCGAAAAGCAAAAGTA+AGG | - | chr1.4:53357320-53357339 | MS.gene029857:CDS | 35.0% |
| ! | ATATCTTCTAGCTGGTGATT+TGG | - | chr1.4:53357581-53357600 | MS.gene029857:CDS | 35.0% |
| ! | ATTGATTTCACGTGTGTGTA+AGG | - | chr1.4:53357992-53358011 | MS.gene029857:CDS | 35.0% |
| ! | CAAATATGGGTTGTTGAAGA+TGG | - | chr1.4:53358029-53358048 | MS.gene029857:CDS | 35.0% |
| ! | CATCTGGATATGGAAAGTAT+TGG | - | chr1.4:53357906-53357925 | MS.gene029857:CDS | 35.0% |
| ! | GGTTTTACAAAGGATATGCA+GGG | - | chr1.4:53356883-53356902 | MS.gene029857:CDS | 35.0% |
| ! | TCCATATCCAGATGATTTGT+GGG | + | chr1.4:53357900-53357919 | None:intergenic | 35.0% |
| ! | TTCATCCATACTTGCTAACA+TGG | + | chr1.4:53356083-53356102 | None:intergenic | 35.0% |
| !! | CAAGCATCAAAGATTTTAGC+TGG | - | chr1.4:53356856-53356875 | MS.gene029857:CDS | 35.0% |
| !! | GTTGATGTTGGCATTGATAT+GGG | - | chr1.4:53357507-53357526 | MS.gene029857:CDS | 35.0% |
| !! | TATGGAAAGTATTGGTGCAT+TGG | - | chr1.4:53357914-53357933 | MS.gene029857:CDS | 35.0% |
| !! | TGTTGATGTTGGCATTGATA+TGG | - | chr1.4:53357506-53357525 | MS.gene029857:CDS | 35.0% |
| !! | TTGATGTTGGCATTGATATG+GGG | - | chr1.4:53357508-53357527 | MS.gene029857:CDS | 35.0% |
| !!! | AGATATTTTAGCTGCCCATT+TGG | - | chr1.4:53356309-53356328 | MS.gene029857:CDS | 35.0% |
| ACCCACAAATCATCTGGATA+TGG | - | chr1.4:53357896-53357915 | MS.gene029857:CDS | 40.0% | |
| ACTAACAAGAACAACTCCAC+CGG | + | chr1.4:53357961-53357980 | None:intergenic | 40.0% | |
| ACTCCCATTGTCAAACTATC+AGG | - | chr1.4:53357804-53357823 | MS.gene029857:CDS | 40.0% | |
| ACTTCAATAAGCTGCAGAAG+TGG | + | chr1.4:53357444-53357463 | None:intergenic | 40.0% | |
| AGACAAGGCTCAACAAGATA+AGG | - | chr1.4:53357263-53357282 | MS.gene029857:CDS | 40.0% | |
| AGACTCTCAGATGTTGATGT+TGG | - | chr1.4:53357495-53357514 | MS.gene029857:CDS | 40.0% | |
| AGATGAACCCACAAATCATC+TGG | - | chr1.4:53357890-53357909 | MS.gene029857:CDS | 40.0% | |
| CACTAATCATCTTGACCTGA+GGG | - | chr1.4:53357002-53357021 | MS.gene029857:CDS | 40.0% | |
| CCATTGTCAAACTATCAGGA+GGG | - | chr1.4:53357808-53357827 | MS.gene029857:CDS | 40.0% | |
| CCTACAAAATCCTTTAGTGG+GGG | - | chr1.4:53356910-53356929 | MS.gene029857:CDS | 40.0% | |
| CCTCCTGATAGTTTGACAAT+GGG | + | chr1.4:53357810-53357829 | None:intergenic | 40.0% | |
| CTCAGGTCAAGATGATTAGT+GGG | + | chr1.4:53357003-53357022 | None:intergenic | 40.0% | |
| CTGTAGTCTCTATACTTGTG+TGG | + | chr1.4:53357381-53357400 | None:intergenic | 40.0% | |
| CTTTGTGGACCTACTAACAA+TGG | - | chr1.4:53357665-53357684 | MS.gene029857:CDS | 40.0% | |
| GAGATATTCCCAACACTTTG+TGG | - | chr1.4:53357650-53357669 | MS.gene029857:CDS | 40.0% | |
| GATCTACAAAATGCAGCTTC+AGG | - | chr1.4:53356724-53356743 | MS.gene029857:CDS | 40.0% | |
| GATGCACTGCATAAATTCAC+CGG | - | chr1.4:53357939-53357958 | MS.gene029857:CDS | 40.0% | |
| GCAAAGAAAGAAGCTCTTAG+AGG | - | chr1.4:53356340-53356359 | MS.gene029857:CDS | 40.0% | |
| GCATCAGTGAAGATATCTCA+TGG | - | chr1.4:53356502-53356521 | MS.gene029857:CDS | 40.0% | |
| GGAGTAAGATGGTTATGACT+AGG | + | chr1.4:53357789-53357808 | None:intergenic | 40.0% | |
| GGTACTGTAAGAAATTTCCC+TGG | - | chr1.4:53358050-53358069 | MS.gene029857:CDS | 40.0% | |
| GTGTGTGTAAGGATGAAGAA+CGG | - | chr1.4:53358003-53358022 | MS.gene029857:CDS | 40.0% | |
| GTTTGACAATGGGAGTAAGA+TGG | + | chr1.4:53357800-53357819 | None:intergenic | 40.0% | |
| TAATGTTGTCATCCCAAGTC+GGG | - | chr1.4:53356378-53356397 | MS.gene029857:CDS | 40.0% | |
| TCAGTGTATGCAGAAGCTTT+CGG | + | chr1.4:53356163-53356182 | None:intergenic | 40.0% | |
| TCATGGAAAACGGTATGGTT+TGG | - | chr1.4:53356519-53356538 | MS.gene029857:CDS | 40.0% | |
| TCCGATTCATCATCATCAGA+GGG | + | chr1.4:53356202-53356221 | None:intergenic | 40.0% | |
| TCTCAGAGCATACTGTATTG+AGG | + | chr1.4:53357101-53357120 | None:intergenic | 40.0% | |
| TTAGTAGGTCCACAAAGTGT+TGG | + | chr1.4:53357662-53357681 | None:intergenic | 40.0% | |
| TTCCGATTCATCATCATCAG+AGG | + | chr1.4:53356203-53356222 | None:intergenic | 40.0% | |
| TTGAAAGCAGCTAAAAGGAC+TGG | - | chr1.4:53357240-53357259 | MS.gene029857:CDS | 40.0% | |
| TTGACTTTCCCATTCCATTC+GGG | + | chr1.4:53356549-53356568 | None:intergenic | 40.0% | |
| ! | AATTTTTCTGTGTCTGCTCG+TGG | - | chr1.4:53356460-53356479 | MS.gene029857:CDS | 40.0% |
| ! | CATGGTTTAGCCTTTGTAGA+TGG | + | chr1.4:53356019-53356038 | None:intergenic | 40.0% |
| ! | GGGTTTTACAAAGGATATGC+AGG | - | chr1.4:53356882-53356901 | MS.gene029857:CDS | 40.0% |
| ! | GTAGATTTTCCAGCACCATT+AGG | + | chr1.4:53357555-53357574 | None:intergenic | 40.0% |
| ! | GTTGACTTTCCCATTCCATT+CGG | + | chr1.4:53356550-53356569 | None:intergenic | 40.0% |
| ! | TAGTAGGTCCACAAAGTGTT+GGG | + | chr1.4:53357661-53357680 | None:intergenic | 40.0% |
| ! | TCCCTCTGATGATGATGAAT+CGG | - | chr1.4:53356198-53356217 | MS.gene029857:CDS | 40.0% |
| ! | TGATGATGATGAATCGGAAG+AGG | - | chr1.4:53356204-53356223 | MS.gene029857:CDS | 40.0% |
| !! | ATGATGCTTTTAAAAGCGGG+TGG | - | chr1.4:53357166-53357185 | MS.gene029857:CDS | 40.0% |
| !! | TGATGCTTTTAAAAGCGGGT+GGG | - | chr1.4:53357167-53357186 | MS.gene029857:CDS | 40.0% |
| !!! | AGCTGGTTTGGGTTTTACAA+AGG | - | chr1.4:53356873-53356892 | MS.gene029857:CDS | 40.0% |
| !!! | CACTTTTGAAGCTTCTTGCT+TGG | - | chr1.4:53356569-53356588 | MS.gene029857:CDS | 40.0% |
| !!! | TTTTGAAGCTTCTTGCTTGG+AGG | - | chr1.4:53356572-53356591 | MS.gene029857:CDS | 40.0% |
| AATGCAGCTTCAGGTGAAGA+AGG | - | chr1.4:53356733-53356752 | MS.gene029857:CDS | 45.0% | |
| ACTAATGAGGAAGAGGATGC+AGG | - | chr1.4:53356772-53356791 | MS.gene029857:CDS | 45.0% | |
| ACTTGTGTGGTACCTCTACT+TGG | + | chr1.4:53357368-53357387 | None:intergenic | 45.0% | |
| AGCTAAAAGGACTGGAGACA+AGG | - | chr1.4:53357248-53357267 | MS.gene029857:CDS | 45.0% | |
| CAAGTATAGAGACTACAGCG+TGG | - | chr1.4:53357383-53357402 | MS.gene029857:CDS | 45.0% | |
| CCACTAATCATCTTGACCTG+AGG | - | chr1.4:53357001-53357020 | MS.gene029857:CDS | 45.0% | |
| CCCATTGTCAAACTATCAGG+AGG | - | chr1.4:53357807-53357826 | MS.gene029857:CDS | 45.0% | |
| CCCTCCTGATAGTTTGACAA+TGG | + | chr1.4:53357811-53357830 | None:intergenic | 45.0% | |
| CCTCAGGTCAAGATGATTAG+TGG | + | chr1.4:53357004-53357023 | None:intergenic | 45.0% | |
| CTCTGCCATGTTAGCAAGTA+TGG | - | chr1.4:53356075-53356094 | MS.gene029857:CDS | 45.0% | |
| CTTCGAAGTTCACCTTCACT+TGG | + | chr1.4:53357609-53357628 | None:intergenic | 45.0% | |
| CTTGTGTGGTACCTCTACTT+GGG | + | chr1.4:53357367-53357386 | None:intergenic | 45.0% | |
| CTTTGCCTGTTCAGCCAAAT+GGG | + | chr1.4:53356326-53356345 | None:intergenic | 45.0% | |
| GATTCATCATCATCAGAGGG+AGG | + | chr1.4:53356199-53356218 | None:intergenic | 45.0% | |
| GGAGCATGAGCAAAGACATA+GGG | - | chr1.4:53356225-53356244 | MS.gene029857:CDS | 45.0% | |
| GGCTCAACAAGATAAGGTGA+AGG | - | chr1.4:53357269-53357288 | MS.gene029857:CDS | 45.0% | |
| GGGAAAGTTTGATGAGGATG+AGG | - | chr1.4:53357341-53357360 | MS.gene029857:CDS | 45.0% | |
| TCAATAAGCTGCAGAAGTGG+CGG | + | chr1.4:53357441-53357460 | None:intergenic | 45.0% | |
| TCAGCAATAGACACCTCAAG+TGG | + | chr1.4:53356262-53356281 | None:intergenic | 45.0% | |
| TCGCTGGAAGAAAACTTTGG+TGG | - | chr1.4:53357053-53357072 | MS.gene029857:CDS | 45.0% | |
| TCTTTGCCTGTTCAGCCAAA+TGG | + | chr1.4:53356327-53356346 | None:intergenic | 45.0% | |
| ! | AGGAGCATGAGCAAAGACAT+AGG | - | chr1.4:53356224-53356243 | MS.gene029857:CDS | 45.0% |
| ! | CCCCCACTAAAGGATTTTGT+AGG | + | chr1.4:53356913-53356932 | None:intergenic | 45.0% |
| ! | GTGTCGCTGGAAGAAAACTT+TGG | - | chr1.4:53357050-53357069 | MS.gene029857:CDS | 45.0% |
| ! | TGAGCTTTAGCTACCCAAAC+CGG | - | chr1.4:53357463-53357482 | MS.gene029857:CDS | 45.0% |
| ! | TTGGTTCTTGATGGAGACGA+TGG | - | chr1.4:53356403-53356422 | MS.gene029857:CDS | 45.0% |
| !! | AGACGAAGAAGGTACTGAAC+AGG | + | chr1.4:53357699-53357718 | None:intergenic | 45.0% |
| !! | GGAAAACGGTATGGTTTGGT+TGG | - | chr1.4:53356523-53356542 | MS.gene029857:CDS | 45.0% |
| !! | GGTGATTTGGTTCCAAGTGA+AGG | - | chr1.4:53357594-53357613 | MS.gene029857:CDS | 45.0% |
| !! | TAGAAGAGTACTTGTGTCGC+TGG | - | chr1.4:53357037-53357056 | MS.gene029857:CDS | 45.0% |
| !!! | TTCGGAGCAGGTTTTGACTT+CGG | + | chr1.4:53356145-53356164 | None:intergenic | 45.0% |
| AGCACCATTAGGCCCAACAA+TGG | + | chr1.4:53357544-53357563 | None:intergenic | 50.0% | |
| ATTGTTGGGCCTAATGGTGC+TGG | - | chr1.4:53357543-53357562 | MS.gene029857:CDS | 50.0% | |
| CAAAATCCTTTAGTGGGGGC+TGG | - | chr1.4:53356914-53356933 | MS.gene029857:CDS | 50.0% | |
| CAAGAACCAAAGCCCGACTT+GGG | + | chr1.4:53356393-53356412 | None:intergenic | 50.0% | |
| CTTGCTTACTAAGTCCCTCC+TGG | + | chr1.4:53357731-53357750 | None:intergenic | 50.0% | |
| GCACTGCATAAATTCACCGG+TGG | - | chr1.4:53357942-53357961 | MS.gene029857:CDS | 50.0% | |
| GCTCTGTAGGTTCAGGAAAG+TGG | + | chr1.4:53357413-53357432 | None:intergenic | 50.0% | |
| GGACTCGTGTTGCCATTGTT+GGG | - | chr1.4:53357529-53357548 | MS.gene029857:CDS | 50.0% | |
| GGAGGGACTTAGTAAGCAAG+AGG | - | chr1.4:53357731-53357750 | MS.gene029857:CDS | 50.0% | |
| GGCTGATGTTAAGCCACTTG+AGG | - | chr1.4:53356246-53356265 | MS.gene029857:CDS | 50.0% | |
| GTTGCCATTGTTGGGCCTAA+TGG | - | chr1.4:53357537-53357556 | MS.gene029857:CDS | 50.0% | |
| TATCAGGAGGGCAGAAAGCT+CGG | - | chr1.4:53357820-53357839 | MS.gene029857:CDS | 50.0% | |
| TATGCAGAAGCTTTCGGAGC+AGG | + | chr1.4:53356157-53356176 | None:intergenic | 50.0% | |
| TCAAGAACCAAAGCCCGACT+TGG | + | chr1.4:53356394-53356413 | None:intergenic | 50.0% | |
| TTACTAAGTCCCTCCTGGTC+TGG | + | chr1.4:53357726-53357745 | None:intergenic | 50.0% | |
| ! | AGTCTGAAATCCTCCCGGTT+TGG | + | chr1.4:53357480-53357499 | None:intergenic | 50.0% |
| ! | CTGAGAGTCTGAAATCCTCC+CGG | + | chr1.4:53357485-53357504 | None:intergenic | 50.0% |
| ! | GAGCTTTAGCTACCCAAACC+GGG | - | chr1.4:53357464-53357483 | MS.gene029857:CDS | 50.0% |
| ! | GTCTGAAATCCTCCCGGTTT+GGG | + | chr1.4:53357479-53357498 | None:intergenic | 50.0% |
| ! | TTGGTTGGCCCGAATGGAAT+GGG | - | chr1.4:53356538-53356557 | MS.gene029857:CDS | 50.0% |
| ! | TTTGGTTGGCCCGAATGGAA+TGG | - | chr1.4:53356537-53356556 | MS.gene029857:CDS | 50.0% |
| !! | AGTCGGGCTTTGGTTCTTGA+TGG | - | chr1.4:53356394-53356413 | MS.gene029857:CDS | 50.0% |
| !! | TATGGTTTGGTTGGCCCGAA+TGG | - | chr1.4:53356532-53356551 | MS.gene029857:CDS | 50.0% |
| AATCCTTTAGTGGGGGCTGG+AGG | - | chr1.4:53356917-53356936 | MS.gene029857:CDS | 55.0% | |
| AGCTGCCCATTTGGCTGAAC+AGG | - | chr1.4:53356318-53356337 | MS.gene029857:CDS | 55.0% | |
| ATCAGGAGGGCAGAAAGCTC+GGG | - | chr1.4:53357821-53357840 | MS.gene029857:CDS | 55.0% | |
| CGGGTGGGAACAACGTTGTA+GGG | - | chr1.4:53357182-53357201 | MS.gene029857:CDS | 55.0% | |
| CTAACCAGAGAACAGCCCTC+AGG | + | chr1.4:53357020-53357039 | None:intergenic | 55.0% | |
| CTACCTCCTGCTCAACCAGA+AGG | + | chr1.4:53356627-53356646 | None:intergenic | 55.0% | |
| CTGGTTGAGCAGGAGGTAGT+TGG | - | chr1.4:53356628-53356647 | MS.gene029857:CDS | 55.0% | |
| CTTTAGCTACCCAAACCGGG+AGG | - | chr1.4:53357467-53357486 | MS.gene029857:CDS | 55.0% | |
| GAGGCTGTCCGTGCAAAACT+TGG | - | chr1.4:53357750-53357769 | MS.gene029857:CDS | 55.0% | |
| GGGACTCGTGTTGCCATTGT+TGG | - | chr1.4:53357528-53357547 | MS.gene029857:CDS | 55.0% | |
| GGTCTGGATGCAGACGAAGA+AGG | + | chr1.4:53357710-53357729 | None:intergenic | 55.0% | |
| GGTGTGAGCTCTGTAGGTTC+AGG | + | chr1.4:53357420-53357439 | None:intergenic | 55.0% | |
| GTGGGAACAACGTTGTAGGG+AGG | - | chr1.4:53357185-53357204 | MS.gene029857:CDS | 55.0% | |
| TCTTCGTCTGCATCCAGACC+AGG | - | chr1.4:53357710-53357729 | MS.gene029857:CDS | 55.0% | |
| TGAGGATGAGGCCCAAGTAG+AGG | - | chr1.4:53357353-53357372 | MS.gene029857:CDS | 55.0% | |
| TGTCATCCCAAGTCGGGCTT+TGG | - | chr1.4:53356384-53356403 | MS.gene029857:CDS | 55.0% | |
| TTGACCTGAGGGCTGTTCTC+TGG | - | chr1.4:53357013-53357032 | MS.gene029857:CDS | 55.0% | |
| ! | TGACGTCCTTCTGGTTGAGC+AGG | - | chr1.4:53356618-53356637 | MS.gene029857:CDS | 55.0% |
| AGTGGCGGTGTGAGCTCTGT+AGG | + | chr1.4:53357426-53357445 | None:intergenic | 60.0% | |
| CAGCAGCATCAGACCCCATC+AGG | + | chr1.4:53356831-53356850 | None:intergenic | 60.0% | |
| CATCCTCCAGCCCCCACTAA+AGG | + | chr1.4:53356923-53356942 | None:intergenic | 60.0% | |
| CGTCTGCATCCAGACCAGGA+GGG | - | chr1.4:53357714-53357733 | MS.gene029857:CDS | 60.0% | |
| GCGGGTGGGAACAACGTTGT+AGG | - | chr1.4:53357181-53357200 | MS.gene029857:CDS | 60.0% | |
| TCGTCTGCATCCAGACCAGG+AGG | - | chr1.4:53357713-53357732 | MS.gene029857:CDS | 60.0% | |
| ! | CGTCCTTCTGGTTGAGCAGG+AGG | - | chr1.4:53356621-53356640 | MS.gene029857:CDS | 60.0% |
| AGGAGGGCAGAAAGCTCGGG+TGG | - | chr1.4:53357824-53357843 | MS.gene029857:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 53355986 | 53358133 | 53355986 | ID=MS.gene029857 |
| chr1.4 | mRNA | 53355986 | 53358133 | 53355986 | ID=MS.gene029857.t1;Parent=MS.gene029857 |
| chr1.4 | exon | 53355986 | 53358133 | 53355986 | ID=MS.gene029857.t1.exon1;Parent=MS.gene029857.t1 |
| chr1.4 | CDS | 53355986 | 53358133 | 53355986 | ID=cds.MS.gene029857.t1;Parent=MS.gene029857.t1 |
| Gene Sequence |
| Protein sequence |
