Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049135.t1 | XP_003630825.2 | 96.7 | 419 | 9 | 3 | 1 | 415 | 1 | 418 | 7.80E-221 | 776.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049135.t1 | Q9T0K7 | 73.3 | 386 | 99 | 1 | 34 | 415 | 36 | 421 | 1.2e-161 | 570.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049135.t1 | I3S5F5 | 96.7 | 419 | 9 | 3 | 1 | 415 | 1 | 418 | 5.6e-221 | 776.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016092 | MS.gene049135 | PPI |
| MS.gene000261 | MS.gene049135 | PPI |
| MS.gene022768 | MS.gene049135 | PPI |
| MS.gene022542 | MS.gene049135 | PPI |
| MS.gene020199 | MS.gene049135 | PPI |
| MS.gene33113 | MS.gene049135 | PPI |
| MS.gene39279 | MS.gene049135 | PPI |
| MS.gene015737 | MS.gene049135 | PPI |
| MS.gene04775 | MS.gene049135 | PPI |
| MS.gene058482 | MS.gene049135 | PPI |
| MS.gene61573 | MS.gene049135 | PPI |
| MS.gene049135 | MS.gene030881 | PPI |
| MS.gene59431 | MS.gene049135 | PPI |
| MS.gene049135 | MS.gene62781 | PPI |
| MS.gene27992 | MS.gene049135 | PPI |
| MS.gene019194 | MS.gene049135 | PPI |
| MS.gene05932 | MS.gene049135 | PPI |
| MS.gene049135 | MS.gene058907 | PPI |
| MS.gene010581 | MS.gene049135 | PPI |
| MS.gene47956 | MS.gene049135 | PPI |
| MS.gene051489 | MS.gene049135 | PPI |
| MS.gene64726 | MS.gene049135 | PPI |
| MS.gene62781 | MS.gene049135 | PPI |
| MS.gene69510 | MS.gene049135 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049135.t1 | MTR_8g103840 | 98.143 | 377 | 7 | 0 | 39 | 415 | 1 | 377 | 0.0 | 761 |
| MS.gene049135.t1 | MTR_8g103840 | 92.124 | 419 | 24 | 5 | 1 | 415 | 1 | 414 | 0.0 | 749 |
| MS.gene049135.t1 | MTR_8g103840 | 98.403 | 313 | 5 | 0 | 103 | 415 | 4 | 316 | 0.0 | 631 |
| MS.gene049135.t1 | MTR_8g103840 | 97.611 | 293 | 7 | 0 | 123 | 415 | 8 | 300 | 0.0 | 587 |
| MS.gene049135.t1 | MTR_8g103840 | 98.134 | 268 | 5 | 0 | 148 | 415 | 1 | 268 | 0.0 | 539 |
| MS.gene049135.t1 | MTR_8g010580 | 35.754 | 358 | 208 | 10 | 55 | 409 | 22 | 360 | 6.00e-53 | 181 |
| MS.gene049135.t1 | MTR_3g046330 | 30.495 | 364 | 227 | 11 | 51 | 410 | 19 | 360 | 3.74e-48 | 169 |
| MS.gene049135.t1 | MTR_8g005990 | 32.877 | 365 | 218 | 12 | 48 | 406 | 40 | 383 | 3.15e-47 | 167 |
| MS.gene049135.t1 | MTR_8g010580 | 34.835 | 333 | 195 | 10 | 55 | 384 | 22 | 335 | 8.75e-45 | 159 |
| MS.gene049135.t1 | MTR_1g014040 | 30.623 | 369 | 225 | 13 | 43 | 405 | 46 | 389 | 1.96e-44 | 159 |
| MS.gene049135.t1 | MTR_8g005990 | 31.781 | 365 | 199 | 12 | 48 | 406 | 40 | 360 | 4.35e-40 | 147 |
| MS.gene049135.t1 | MTR_8g010580 | 35.424 | 271 | 165 | 7 | 55 | 325 | 22 | 282 | 1.40e-37 | 139 |
| MS.gene049135.t1 | MTR_4g100350 | 25.103 | 243 | 161 | 7 | 36 | 271 | 34 | 262 | 7.57e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049135.t1 | AT4G13360 | 73.316 | 386 | 99 | 1 | 34 | 415 | 36 | 421 | 0.0 | 591 |
| MS.gene049135.t1 | AT3G24360 | 67.980 | 406 | 122 | 1 | 18 | 415 | 13 | 418 | 0.0 | 576 |
| MS.gene049135.t1 | AT3G24360 | 64.532 | 406 | 132 | 3 | 18 | 415 | 13 | 414 | 0.0 | 544 |
| MS.gene049135.t1 | AT3G24360 | 70.288 | 313 | 93 | 0 | 103 | 415 | 4 | 316 | 4.48e-166 | 469 |
| MS.gene049135.t1 | AT3G24360 | 69.153 | 295 | 90 | 1 | 121 | 415 | 21 | 314 | 3.93e-153 | 436 |
| MS.gene049135.t1 | AT3G24360 | 69.072 | 291 | 90 | 0 | 125 | 415 | 3 | 293 | 1.22e-152 | 434 |
| MS.gene049135.t1 | AT3G24360 | 67.905 | 296 | 87 | 1 | 18 | 305 | 13 | 308 | 3.05e-147 | 422 |
| MS.gene049135.t1 | AT5G65940 | 36.667 | 360 | 206 | 9 | 53 | 409 | 19 | 359 | 8.09e-65 | 212 |
| MS.gene049135.t1 | AT5G65940 | 36.667 | 360 | 206 | 9 | 53 | 409 | 19 | 359 | 8.09e-65 | 212 |
| MS.gene049135.t1 | AT2G30660 | 34.831 | 356 | 210 | 9 | 51 | 403 | 13 | 349 | 8.22e-61 | 202 |
| MS.gene049135.t1 | AT5G65940 | 36.418 | 335 | 191 | 9 | 53 | 384 | 19 | 334 | 1.52e-57 | 192 |
| MS.gene049135.t1 | AT2G30650 | 34.615 | 364 | 212 | 9 | 53 | 411 | 15 | 357 | 2.07e-57 | 193 |
| MS.gene049135.t1 | AT2G30660 | 34.769 | 325 | 190 | 9 | 82 | 403 | 12 | 317 | 4.32e-54 | 183 |
| MS.gene049135.t1 | AT1G06550 | 32.676 | 355 | 215 | 11 | 53 | 404 | 21 | 354 | 1.48e-49 | 172 |
| MS.gene049135.t1 | AT5G65940 | 34.663 | 326 | 191 | 9 | 53 | 375 | 19 | 325 | 2.34e-49 | 170 |
| MS.gene049135.t1 | AT4G31810 | 32.861 | 353 | 211 | 11 | 58 | 405 | 56 | 387 | 8.66e-48 | 168 |
| MS.gene049135.t1 | AT2G30650 | 32.317 | 328 | 196 | 9 | 53 | 375 | 15 | 321 | 1.85e-41 | 149 |
| MS.gene049135.t1 | AT3G60510 | 32.011 | 353 | 216 | 10 | 58 | 406 | 52 | 384 | 1.46e-40 | 149 |
| MS.gene049135.t1 | AT3G60510 | 30.667 | 375 | 217 | 11 | 58 | 406 | 52 | 409 | 1.18e-37 | 141 |
| MS.gene049135.t1 | AT3G60510 | 32.342 | 269 | 170 | 8 | 58 | 325 | 52 | 309 | 8.86e-29 | 115 |
Find 118 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAAGAAAGGTTTGATTT+TGG | 0.204953 | 4.1:+2550704 | None:intergenic |
| TTCATGGCGTTGAGAGCTTT+GGG | 0.269255 | 4.1:+2550597 | None:intergenic |
| TTCATTCAAGGAGGCCCTTT+TGG | 0.286601 | 4.1:-2548315 | MS.gene049135:CDS |
| GTTCTTGCAATGCCAGAAAA+TGG | 0.288824 | 4.1:-2548794 | MS.gene049135:CDS |
| CCTGAGATAATTTCTTCATT+TGG | 0.297730 | 4.1:-2547863 | MS.gene049135:CDS |
| CCATCCATGAAACTTATATA+TGG | 0.298685 | 4.1:+2548995 | None:intergenic |
| GTTCATGGCGTTGAGAGCTT+TGG | 0.301149 | 4.1:+2550596 | None:intergenic |
| ACCTTGATGGTTTCCACGTT+GGG | 0.302462 | 4.1:+2546506 | None:intergenic |
| TTCTTCAGCCATTGAAGAAA+TGG | 0.307356 | 4.1:+2550674 | None:intergenic |
| ACCAGAACACATTTGACATT+TGG | 0.311682 | 4.1:+2550220 | None:intergenic |
| GATGGAATAACAATGGGTTT+TGG | 0.315013 | 4.1:-2548977 | MS.gene049135:CDS |
| CTGACTGCAGGTGCTTATCT+TGG | 0.324350 | 4.1:-2548422 | MS.gene049135:intron |
| AATGCAGGTATGGATATTAA+AGG | 0.328338 | 4.1:-2549992 | MS.gene049135:intron |
| CTGCGACATGATTTCGTAGA+AGG | 0.333713 | 4.1:-2547352 | MS.gene049135:CDS |
| CCAGAACACATTTGACATTT+GGG | 0.350947 | 4.1:+2550221 | None:intergenic |
| CTCGCCCACCTCTGCTCCTA+AGG | 0.358294 | 4.1:+2546441 | None:intergenic |
| TTTCCGACCCATTTCTTCAA+TGG | 0.359939 | 4.1:-2550682 | MS.gene049135:CDS |
| TCAACTTCCTCCAACCTTGA+TGG | 0.368546 | 4.1:+2546493 | None:intergenic |
| AGTACTTGTTTGTCAAGAAA+AGG | 0.372402 | 4.1:+2547574 | None:intergenic |
| TTTAACTGTGCCTCACTGTC+CGG | 0.378341 | 4.1:+2547896 | None:intergenic |
| ATATGAGCAAATCCTACATC+TGG | 0.391243 | 4.1:+2548758 | None:intergenic |
| CTATTGGTTATTTAGTTCTC+AGG | 0.393990 | 4.1:-2547966 | MS.gene049135:intron |
| GAAACCATATATAAGTTTCA+TGG | 0.401334 | 4.1:-2548999 | MS.gene049135:CDS |
| TATGTGCCATCGGGAAAGTT+AGG | 0.405875 | 4.1:-2548338 | MS.gene049135:CDS |
| ATGCAGGTATGGATATTAAA+GGG | 0.406021 | 4.1:-2549991 | MS.gene049135:intron |
| GCAATGCCAGAAAATGGAAT+TGG | 0.413015 | 4.1:-2548788 | MS.gene049135:CDS |
| CATACAAGTTTGTTGCCAAA+AGG | 0.414169 | 4.1:+2548300 | None:intergenic |
| TAAAAGTTATCTTGATGAAT+GGG | 0.417765 | 4.1:-2550251 | MS.gene049135:CDS |
| GGCAACACCGTTAGAATTAA+CGG | 0.431120 | 4.1:+2550638 | None:intergenic |
| CCCAAATGTCAAATGTGTTC+TGG | 0.432136 | 4.1:-2550221 | MS.gene049135:CDS |
| GAGATAATTTCTTCATTTGG+AGG | 0.438462 | 4.1:-2547860 | MS.gene049135:CDS |
| ATAAAAGTTATCTTGATGAA+TGG | 0.449490 | 4.1:-2550252 | MS.gene049135:CDS |
| AAATAAGAAACCTAGGTTCA+TGG | 0.454268 | 4.1:+2550581 | None:intergenic |
| AGTATTAGTGGATAAAGATC+AGG | 0.459616 | 4.1:-2547320 | MS.gene049135:intron |
| CAGTCGAGCACTGACTCTAA+TGG | 0.460203 | 4.1:-2547794 | MS.gene049135:intron |
| CCAACATATATTGCATCTGC+TGG | 0.461407 | 4.1:+2548374 | None:intergenic |
| TTCATGGATGGAATAACAAT+GGG | 0.461776 | 4.1:-2548983 | MS.gene049135:CDS |
| GTACTTGTTTGTCAAGAAAA+GGG | 0.464988 | 4.1:+2547575 | None:intergenic |
| AAGCACACCTTTAGTGCAAA+AGG | 0.469186 | 4.1:-2549942 | MS.gene049135:intron |
| GGAATTGGCTTATCTGGTCA+TGG | 0.469307 | 4.1:-2548956 | MS.gene049135:CDS |
| GGTGCTTATCTTGGATTGAC+TGG | 0.469940 | 4.1:-2548413 | MS.gene049135:CDS |
| GATGCAATATATGTTGGCTT+AGG | 0.477695 | 4.1:-2548368 | MS.gene049135:CDS |
| TCTATTTCTAGTTGCTGAGT+GGG | 0.479340 | 4.1:-2547640 | MS.gene049135:intron |
| TAGTTCTCAGGATCCCCATC+AGG | 0.480036 | 4.1:-2547954 | MS.gene049135:CDS |
| TCTTCAGCCATTGAAGAAAT+GGG | 0.483584 | 4.1:+2550675 | None:intergenic |
| AAGACGGCTTCAACCTCACT+TGG | 0.485673 | 4.1:+2546469 | None:intergenic |
| TTACCAACAGCTCCTTCTCC+TGG | 0.486422 | 4.1:+2548722 | None:intergenic |
| GCTCTCCAAGGCCTTGCAAA+AGG | 0.490434 | 4.1:-2547609 | MS.gene049135:CDS |
| TTAACTGTGCCTCACTGTCC+GGG | 0.494046 | 4.1:+2547897 | None:intergenic |
| CCAAATGAAGAAATTATCTC+AGG | 0.496539 | 4.1:+2547863 | None:intergenic |
| ATACAAGTTTGTTGCCAAAA+GGG | 0.500776 | 4.1:+2548301 | None:intergenic |
| TGGGGCGATCGAGGGTGAGA+AGG | 0.503187 | 4.1:+2550616 | None:intergenic |
| ATCATACATACCGGCACAAA+AGG | 0.503920 | 4.1:+2550177 | None:intergenic |
| AACCTTGATGGTTTCCACGT+TGG | 0.504644 | 4.1:+2546505 | None:intergenic |
| CATATAGCGGCTCAAAGTCC+AGG | 0.508132 | 4.1:-2548740 | MS.gene049135:CDS |
| TCTTGGATTGACTGGAAAGA+GGG | 0.508317 | 4.1:-2548405 | MS.gene049135:CDS |
| GGGAAAGTTAGGTTCATTCA+AGG | 0.518997 | 4.1:-2548327 | MS.gene049135:CDS |
| AAAGTACTTTGATGTCCTGA+TGG | 0.520744 | 4.1:+2547939 | None:intergenic |
| TCTGCCGTTGCCTCTGCACT+AGG | 0.522855 | 4.1:-2547549 | MS.gene049135:CDS |
| ATTGGCTTGTTCCCAGATGT+AGG | 0.524294 | 4.1:-2548770 | MS.gene049135:CDS |
| AGGTGTCCGAGCAGTATTAG+TGG | 0.524429 | 4.1:-2547332 | MS.gene049135:CDS |
| CATTAGAGTCAGTGCTCGAC+TGG | 0.527781 | 4.1:+2547795 | None:intergenic |
| TTTCATGGATGGAATAACAA+TGG | 0.527960 | 4.1:-2548984 | MS.gene049135:CDS |
| ATCTTGGATTGACTGGAAAG+AGG | 0.530642 | 4.1:-2548406 | MS.gene049135:CDS |
| TTCTATTTCTAGTTGCTGAG+TGG | 0.533730 | 4.1:-2547641 | MS.gene049135:intron |
| TGAGAGCTTTGGGGCGATCG+AGG | 0.541267 | 4.1:+2550607 | None:intergenic |
| AAGTACTTTGATGTCCTGAT+GGG | 0.541762 | 4.1:+2547940 | None:intergenic |
| ATGGGTCGGAAAGAGAAGAA+AGG | 0.541911 | 4.1:+2550693 | None:intergenic |
| CCAGCAGATGCAATATATGT+TGG | 0.544693 | 4.1:-2548374 | MS.gene049135:CDS |
| GGGGCGATCGAGGGTGAGAA+GGG | 0.549823 | 4.1:+2550617 | None:intergenic |
| GAAGCCGTCTTTAAACCCTT+AGG | 0.555410 | 4.1:-2546457 | MS.gene049135:CDS |
| GAGAGCTTTGGGGCGATCGA+GGG | 0.558416 | 4.1:+2550608 | None:intergenic |
| CCTTTCCATCGAAAATTACA+CGG | 0.558704 | 4.1:+2546414 | None:intergenic |
| AACGTGGAAACCATCAAGGT+TGG | 0.559760 | 4.1:-2546503 | MS.gene049135:CDS |
| GTGGAAACCATCAAGGTTGG+AGG | 0.561204 | 4.1:-2546500 | MS.gene049135:CDS |
| GGAACACACTATGTGCCATC+GGG | 0.563387 | 4.1:-2548347 | MS.gene049135:CDS |
| GTTTGTCAAGAAAAGGGAGA+AGG | 0.565056 | 4.1:+2547581 | None:intergenic |
| CCATATATAAGTTTCATGGA+TGG | 0.569201 | 4.1:-2548995 | MS.gene049135:CDS |
| TGCTCCTAAGGGTTTAAAGA+CGG | 0.569607 | 4.1:+2546453 | None:intergenic |
| TTTGCCTAGTGCAGAGGCAA+CGG | 0.570032 | 4.1:+2547545 | None:intergenic |
| TAAACCCTTAGGAGCAGAGG+TGG | 0.570655 | 4.1:-2546446 | MS.gene049135:CDS |
| ACCCAACGTGGAAACCATCA+AGG | 0.576112 | 4.1:-2546507 | MS.gene049135:CDS |
| GCTCTCAACGCCATGAACCT+AGG | 0.579390 | 4.1:-2550591 | MS.gene049135:intron |
| TTTGCATATCAAAGAATACT+CGG | 0.580158 | 4.1:+2549036 | None:intergenic |
| AGGAACACACTATGTGCCAT+CGG | 0.580813 | 4.1:-2548348 | MS.gene049135:CDS |
| CTTTATCCACTAATACTGCT+CGG | 0.582905 | 4.1:+2547326 | None:intergenic |
| TCGCCCACCTCTGCTCCTAA+GGG | 0.584657 | 4.1:+2546442 | None:intergenic |
| TCATGGCGTTGAGAGCTTTG+GGG | 0.585204 | 4.1:+2550598 | None:intergenic |
| AGTCCAGGAGAAGGAGCTGT+TGG | 0.585383 | 4.1:-2548725 | MS.gene049135:intron |
| ATGTCGCAGCGAAGACCTCA+AGG | 0.588206 | 4.1:+2547366 | None:intergenic |
| GCGGCTCAAAGTCCAGGAGA+AGG | 0.592993 | 4.1:-2548734 | MS.gene049135:CDS |
| TATGAGCAAATCCTACATCT+GGG | 0.594751 | 4.1:+2548759 | None:intergenic |
| TTTGTCAAGAAAAGGGAGAA+GGG | 0.596278 | 4.1:+2547582 | None:intergenic |
| CTGAGTATCGCATTGCCTTG+AGG | 0.604394 | 4.1:-2547381 | MS.gene049135:CDS |
| ACCGGCACAAAAGGCACGAG+GGG | 0.606107 | 4.1:+2550186 | None:intergenic |
| CTTTAAACCCTTAGGAGCAG+AGG | 0.606217 | 4.1:-2546449 | MS.gene049135:CDS |
| AATGAACCTAACTTTCCCGA+TGG | 0.624467 | 4.1:+2548332 | None:intergenic |
| CAGCCATTGAAGAAATGGGT+CGG | 0.624981 | 4.1:+2550679 | None:intergenic |
| ATGGCTGAAGAATTCGTCAA+AGG | 0.630406 | 4.1:-2550663 | MS.gene049135:CDS |
| AGCAAGATATGAGTCAAACC+CGG | 0.631831 | 4.1:-2547915 | MS.gene049135:CDS |
| AAAGGCACCGTTAATTCTAA+CGG | 0.635338 | 4.1:-2550645 | MS.gene049135:CDS |
| TGCAGGTATGGATATTAAAG+GGG | 0.636890 | 4.1:-2549990 | MS.gene049135:intron |
| GGTTGTTGCTGAAATACAGA+AGG | 0.644020 | 4.1:-2549969 | MS.gene049135:CDS |
| CTTTCCATCGAAAATTACAC+GGG | 0.647825 | 4.1:+2546415 | None:intergenic |
| AAACGACTGTGAATTATCCA+CGG | 0.650353 | 4.1:-2547523 | MS.gene049135:intron |
| TGGGCTAATGAAGCTCTCCA+AGG | 0.651121 | 4.1:-2547621 | MS.gene049135:CDS |
| GGAGGAAGTTGATCCAAGTG+AGG | 0.659499 | 4.1:-2546482 | MS.gene049135:CDS |
| TGTAGGATTTGCTCATATAG+CGG | 0.671989 | 4.1:-2548753 | MS.gene049135:CDS |
| AAACCCTTAGGAGCAGAGGT+GGG | 0.675531 | 4.1:-2546445 | MS.gene049135:CDS |
| TACCGGCACAAAAGGCACGA+GGG | 0.677239 | 4.1:+2550185 | None:intergenic |
| AGTACTTTGATGTCCTGATG+GGG | 0.677245 | 4.1:+2547941 | None:intergenic |
| AAAGTTAGGTTCATTCAAGG+AGG | 0.694937 | 4.1:-2548324 | MS.gene049135:CDS |
| CCGCTATCGTATCATAACAG+AGG | 0.696061 | 4.1:-2548933 | MS.gene049135:intron |
| TGAGTCAAACCCGGACAGTG+AGG | 0.708212 | 4.1:-2547906 | MS.gene049135:CDS |
| ATTCACTGCAGAACCCAACG+TGG | 0.711688 | 4.1:-2546519 | MS.gene049135:intron |
| ATACCGGCACAAAAGGCACG+AGG | 0.714810 | 4.1:+2550184 | None:intergenic |
| ATCTGTTATTGAAATCATCG+AGG | 0.717212 | 4.1:-2547831 | MS.gene049135:CDS |
| CCTCTGTTATGATACGATAG+CGG | 0.726952 | 4.1:+2548933 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAATATGTAAAATT+TGG | - | chr4.1:2546751-2546770 | MS.gene049135:intron | 10.0% |
| !! | AATTACAAATGTAATCTAAT+AGG | + | chr4.1:2547975-2547994 | None:intergenic | 15.0% |
| !! | ATTAGATTACATTTGTAATT+TGG | - | chr4.1:2547975-2547994 | MS.gene049135:intron | 15.0% |
| !! | TTGTTTGAACTTATTTATAT+TGG | - | chr4.1:2550232-2550251 | MS.gene049135:CDS | 15.0% |
| !!! | ATTGATAAATTTTACTTTTG+CGG | - | chr4.1:2550034-2550053 | MS.gene049135:intron | 15.0% |
| !!! | CTTCAATGTTTTAAAATAAT+TGG | - | chr4.1:2547711-2547730 | MS.gene049135:intron | 15.0% |
| !!! | GAATTTTTAGTTAATTATGT+AGG | - | chr4.1:2546877-2546896 | MS.gene049135:intron | 15.0% |
| !! | AAAAAAAAACATGACACATA+TGG | + | chr4.1:2549092-2549111 | None:intergenic | 20.0% |
| !! | AATCTATCAACAACAAAAAA+AGG | + | chr4.1:2550552-2550571 | None:intergenic | 20.0% |
| !! | ACAAAAAAGATGTAACTAAA+GGG | + | chr4.1:2547909-2547928 | None:intergenic | 20.0% |
| !! | ATAAAAGTTATCTTGATGAA+TGG | - | chr4.1:2546954-2546973 | MS.gene049135:intron | 20.0% |
| !! | CTTAACTTAAGAAGTTTAAA+GGG | + | chr4.1:2548979-2548998 | None:intergenic | 20.0% |
| !! | GTTTATTCGATGATTTAATA+AGG | - | chr4.1:2548552-2548571 | MS.gene049135:intron | 20.0% |
| !! | TAAAAGTTATCTTGATGAAT+GGG | - | chr4.1:2546955-2546974 | MS.gene049135:intron | 20.0% |
| !! | TAAAATATTCAAACCGAATT+CGG | + | chr4.1:2548764-2548783 | None:intergenic | 20.0% |
| !! | TCTTAACTTAAGAAGTTTAA+AGG | + | chr4.1:2548980-2548999 | None:intergenic | 20.0% |
| !! | TTCTTAAGTTAAGATTGAAT+TGG | - | chr4.1:2548986-2549005 | MS.gene049135:CDS | 20.0% |
| !!! | AAAAATATGGTGATAATGAT+AGG | + | chr4.1:2549442-2549461 | None:intergenic | 20.0% |
| !!! | AAAAGGTATTCATTTTGAAT+TGG | + | chr4.1:2547622-2547641 | None:intergenic | 20.0% |
| !!! | CTGATTCATATTTTAATGAA+AGG | - | chr4.1:2546780-2546799 | MS.gene049135:intron | 20.0% |
| !!! | CTTTTTTTTTTTTGAGCAAA+AGG | + | chr4.1:2550584-2550603 | None:intergenic | 20.0% |
| !!! | GATTCAAAACAATTGATTTT+TGG | - | chr4.1:2546899-2546918 | MS.gene049135:intron | 20.0% |
| !!! | GTTATGTTTTGTTCAATATT+TGG | - | chr4.1:2550631-2550650 | MS.gene049135:CDS | 20.0% |
| !!! | TATGAGTATAAAAGCATAAA+CGG | + | chr4.1:2550109-2550128 | None:intergenic | 20.0% |
| !!! | TATTTCTGATTATTGTCATA+AGG | - | chr4.1:2546723-2546742 | MS.gene049135:intron | 20.0% |
| !!! | TTGGTAATAAACAGTTATTA+AGG | - | chr4.1:2547730-2547749 | MS.gene049135:intron | 20.0% |
| ! | AACACTCATTAAATTCATGT+TGG | + | chr4.1:2549762-2549781 | None:intergenic | 25.0% |
| ! | ACTATTAAAACATCTAGATG+TGG | - | chr4.1:2548660-2548679 | MS.gene049135:intron | 25.0% |
| ! | ATCACCAAAAAAAAAGGAAA+AGG | + | chr4.1:2549719-2549738 | None:intergenic | 25.0% |
| ! | ATGAAAGGTTAAGAATTTGA+TGG | + | chr4.1:2547585-2547604 | None:intergenic | 25.0% |
| ! | ATTGAACAAAACATAACTGT+GGG | + | chr4.1:2550628-2550647 | None:intergenic | 25.0% |
| ! | CAAAAAAAGGATTTGTACAA+AGG | + | chr4.1:2550539-2550558 | None:intergenic | 25.0% |
| ! | GAAACCATATATAAGTTTCA+TGG | - | chr4.1:2548207-2548226 | MS.gene049135:intron | 25.0% |
| ! | GACAAAAAAGATGTAACTAA+AGG | + | chr4.1:2547910-2547929 | None:intergenic | 25.0% |
| ! | GCTAATAATATCTACACAAA+AGG | + | chr4.1:2547639-2547658 | None:intergenic | 25.0% |
| ! | TAAATTCATGTTGGAAAACA+TGG | + | chr4.1:2549753-2549772 | None:intergenic | 25.0% |
| ! | TATGAAAATAGTGCACAAAA+AGG | + | chr4.1:2548614-2548633 | None:intergenic | 25.0% |
| ! | TATTGAACAAAACATAACTG+TGG | + | chr4.1:2550629-2550648 | None:intergenic | 25.0% |
| ! | TGAATGAAAATAAGAAACCT+AGG | + | chr4.1:2546635-2546654 | None:intergenic | 25.0% |
| ! | TTCAGTGTAAGCAAAAAATA+TGG | + | chr4.1:2549455-2549474 | None:intergenic | 25.0% |
| ! | TTTGCATATCAAAGAATACT+CGG | + | chr4.1:2548173-2548192 | None:intergenic | 25.0% |
| !! | ATGAGTATAAAAGCATAAAC+GGG | + | chr4.1:2550108-2550127 | None:intergenic | 25.0% |
| !! | GCATGGTTTTTATAAATGAA+AGG | + | chr4.1:2547600-2547619 | None:intergenic | 25.0% |
| !! | TTTTATTAACACATTTCCAG+AGG | - | chr4.1:2548386-2548405 | MS.gene049135:CDS | 25.0% |
| !!! | AACAGCTTATTAGTTTTCAT+AGG | - | chr4.1:2548698-2548717 | MS.gene049135:intron | 25.0% |
| !!! | TTGATTTTTGGAAATCTTTG+TGG | - | chr4.1:2546911-2546930 | MS.gene049135:intron | 25.0% |
| !!! | TTTTCATAGGTTTTGTTGAA+AGG | - | chr4.1:2548711-2548730 | MS.gene049135:intron | 25.0% |
| !!! | TTTTCCTTTTTTTTTGGTGA+TGG | - | chr4.1:2549718-2549737 | MS.gene049135:intron | 25.0% |
| AAAAGACTCGAGCAATTTAA+AGG | + | chr4.1:2548942-2548961 | None:intergenic | 30.0% | |
| AAATAAGAAACCTAGGTTCA+TGG | + | chr4.1:2546628-2546647 | None:intergenic | 30.0% | |
| AACTTAAGAAGTTTAAAGGG+TGG | + | chr4.1:2548976-2548995 | None:intergenic | 30.0% | |
| AAGCATGTAAAAAATGCAAC+TGG | + | chr4.1:2547324-2547343 | None:intergenic | 30.0% | |
| AAGTTATCCTCAAAAGCTTA+TGG | + | chr4.1:2550323-2550342 | None:intergenic | 30.0% | |
| AATCTATCTGCATATATTGG+GGG | - | chr4.1:2550489-2550508 | MS.gene049135:intron | 30.0% | |
| AATGCAGGTATGGATATTAA+AGG | - | chr4.1:2547214-2547233 | MS.gene049135:intron | 30.0% | |
| ACATGCATGCAGAAAATTAT+TGG | - | chr4.1:2549994-2550013 | MS.gene049135:intron | 30.0% | |
| ACCAATCTATCTGCATATAT+TGG | - | chr4.1:2550486-2550505 | MS.gene049135:intron | 30.0% | |
| ACGATCTTACACAAAACTAT+TGG | - | chr4.1:2549224-2549243 | MS.gene049135:intron | 30.0% | |
| AGTACTTGTTTGTCAAGAAA+AGG | + | chr4.1:2549635-2549654 | None:intergenic | 30.0% | |
| ATCACCATCACCAAAAAAAA+AGG | + | chr4.1:2549725-2549744 | None:intergenic | 30.0% | |
| ATCTGTTATTGAAATCATCG+AGG | - | chr4.1:2549375-2549394 | MS.gene049135:intron | 30.0% | |
| ATGCAGGTATGGATATTAAA+GGG | - | chr4.1:2547215-2547234 | MS.gene049135:intron | 30.0% | |
| ATTAAGCAACTATACTACAG+CGG | + | chr4.1:2548304-2548323 | None:intergenic | 30.0% | |
| CAATCTATCTGCATATATTG+GGG | - | chr4.1:2550488-2550507 | MS.gene049135:intron | 30.0% | |
| CATTTCTAAACTGACAAACT+TGG | - | chr4.1:2547658-2547677 | MS.gene049135:intron | 30.0% | |
| CCAAATGAAGAAATTATCTC+AGG | + | chr4.1:2549346-2549365 | None:intergenic | 30.0% | |
| CCAATCTATCTGCATATATT+GGG | - | chr4.1:2550487-2550506 | MS.gene049135:intron | 30.0% | |
| CCATATATAAGTTTCATGGA+TGG | - | chr4.1:2548211-2548230 | MS.gene049135:intron | 30.0% | |
| CCATCCATGAAACTTATATA+TGG | + | chr4.1:2548214-2548233 | None:intergenic | 30.0% | |
| CCTAAAATATGCAGCATAAT+AGG | + | chr4.1:2548141-2548160 | None:intergenic | 30.0% | |
| CCTGAGATAATTTCTTCATT+TGG | - | chr4.1:2549343-2549362 | MS.gene049135:intron | 30.0% | |
| GAGATAATTTCTTCATTTGG+AGG | - | chr4.1:2549346-2549365 | MS.gene049135:intron | 30.0% | |
| GATGATTTAATAAGGACTGA+GGG | - | chr4.1:2548560-2548579 | MS.gene049135:intron | 30.0% | |
| GTACTTGTTTGTCAAGAAAA+GGG | + | chr4.1:2549634-2549653 | None:intergenic | 30.0% | |
| TATGACTCAATCATACATAC+CGG | + | chr4.1:2547041-2547060 | None:intergenic | 30.0% | |
| TTAAATATGCAACTCTTGCT+CGG | - | chr4.1:2547789-2547808 | MS.gene049135:intron | 30.0% | |
| TTCATGGATGGAATAACAAT+GGG | - | chr4.1:2548223-2548242 | MS.gene049135:intron | 30.0% | |
| TTGCAGATGTTCTACTTATT+TGG | - | chr4.1:2547148-2547167 | MS.gene049135:intron | 30.0% | |
| TTTCATGGATGGAATAACAA+TGG | - | chr4.1:2548222-2548241 | MS.gene049135:intron | 30.0% | |
| ! | AGTATTAGTGGATAAAGATC+AGG | - | chr4.1:2549886-2549905 | MS.gene049135:intron | 30.0% |
| ! | CATATTTCCATAAGCTTTTG+AGG | - | chr4.1:2550313-2550332 | MS.gene049135:intron | 30.0% |
| ! | CCTATTATGCTGCATATTTT+AGG | - | chr4.1:2548138-2548157 | MS.gene049135:intron | 30.0% |
| ! | GGTTCCTTTTCCTTTTTTTT+TGG | - | chr4.1:2549712-2549731 | MS.gene049135:intron | 30.0% |
| ! | GTATTCATTTTGAATTGGCA+TGG | + | chr4.1:2547617-2547636 | None:intergenic | 30.0% |
| ! | TGAGTATAAAAGCATAAACG+GGG | + | chr4.1:2550107-2550126 | None:intergenic | 30.0% |
| ! | TTTTGCACAAGTTGTTAAAG+TGG | - | chr4.1:2548098-2548117 | MS.gene049135:intron | 30.0% |
| !! | AGAGAAGAAAGGTTTGATTT+TGG | + | chr4.1:2546505-2546524 | None:intergenic | 30.0% |
| !! | ATACAAGTTTGTTGCCAAAA+GGG | + | chr4.1:2548908-2548927 | None:intergenic | 30.0% |
| !! | CTATTGGTTATTTAGTTCTC+AGG | - | chr4.1:2549240-2549259 | MS.gene049135:intron | 30.0% |
| !! | TAGGTGTTGATTGTTTATCA+TGG | - | chr4.1:2546814-2546833 | MS.gene049135:intron | 30.0% |
| !! | TTGAATATTTTACTGACTGC+AGG | - | chr4.1:2548772-2548791 | MS.gene049135:CDS | 30.0% |
| !!! | ATAACAATGGGTTTTGGAAT+TGG | - | chr4.1:2548235-2548254 | MS.gene049135:intron | 30.0% |
| !!! | GCATTTTTTACATGCTTCAT+TGG | - | chr4.1:2547327-2547346 | MS.gene049135:CDS | 30.0% |
| !!! | TCTACTTATTTGGTTTTGAG+TGG | - | chr4.1:2547158-2547177 | MS.gene049135:intron | 30.0% |
| AAAAGACATCATGCTGACAA+TGG | + | chr4.1:2547686-2547705 | None:intergenic | 35.0% | |
| AAACGACTGTGAATTATCCA+CGG | - | chr4.1:2549683-2549702 | MS.gene049135:intron | 35.0% | |
| AAAGTTAGGTTCATTCAAGG+AGG | - | chr4.1:2548882-2548901 | MS.gene049135:intron | 35.0% | |
| AAATCTTTGTGGTGCAGAAA+TGG | - | chr4.1:2546922-2546941 | MS.gene049135:intron | 35.0% | |
| AAGTACTTTGATGTCCTGAT+GGG | + | chr4.1:2549269-2549288 | None:intergenic | 35.0% | |
| AATTGCACCTTTACTTGGTT+TGG | + | chr4.1:2549973-2549992 | None:intergenic | 35.0% | |
| ACCAGAACACATTTGACATT+TGG | + | chr4.1:2546989-2547008 | None:intergenic | 35.0% | |
| ATATGAGCAAATCCTACATC+TGG | + | chr4.1:2548451-2548470 | None:intergenic | 35.0% | |
| ATCGTATCATAACAGAGGTA+TGG | - | chr4.1:2548278-2548297 | MS.gene049135:intron | 35.0% | |
| ATGTCAATTGCACCTTTACT+TGG | + | chr4.1:2549978-2549997 | None:intergenic | 35.0% | |
| ATTAATGGTCAATGCAGGTA+TGG | - | chr4.1:2547204-2547223 | MS.gene049135:intron | 35.0% | |
| CACAAAAAGGAGAAATGGAA+GGG | + | chr4.1:2548601-2548620 | None:intergenic | 35.0% | |
| CAGATGCAATTCAAAGGTTA+AGG | + | chr4.1:2547866-2547885 | None:intergenic | 35.0% | |
| CCAGAACACATTTGACATTT+GGG | + | chr4.1:2546988-2547007 | None:intergenic | 35.0% | |
| CCCAATATATGCAGATAGAT+TGG | + | chr4.1:2550490-2550509 | None:intergenic | 35.0% | |
| CGATGATTTAATAAGGACTG+AGG | - | chr4.1:2548559-2548578 | MS.gene049135:intron | 35.0% | |
| CTGCAGATAAACTAAGATCT+CGG | + | chr4.1:2547481-2547500 | None:intergenic | 35.0% | |
| CTTATATTACCGACACAATC+AGG | + | chr4.1:2549041-2549060 | None:intergenic | 35.0% | |
| CTTCAAGATAGTACAATTGG+TGG | - | chr4.1:2550059-2550078 | MS.gene049135:intron | 35.0% | |
| CTTTATCCACTAATACTGCT+CGG | + | chr4.1:2549883-2549902 | None:intergenic | 35.0% | |
| GAAAAGTTGCATAGCAAAGA+AGG | + | chr4.1:2547395-2547414 | None:intergenic | 35.0% | |
| GCACTTCAAGATAGTACAAT+TGG | - | chr4.1:2550056-2550075 | MS.gene049135:intron | 35.0% | |
| TAGTGCACAAAAAGGAGAAA+TGG | + | chr4.1:2548606-2548625 | None:intergenic | 35.0% | |
| TATGAGCAAATCCTACATCT+GGG | + | chr4.1:2548450-2548469 | None:intergenic | 35.0% | |
| TCATAATTGCCTTCTAAACC+AGG | - | chr4.1:2550124-2550143 | MS.gene049135:intron | 35.0% | |
| TCTTCAGCCATTGAAGAAAT+GGG | + | chr4.1:2546534-2546553 | None:intergenic | 35.0% | |
| TGCAGGTATGGATATTAAAG+GGG | - | chr4.1:2547216-2547235 | MS.gene049135:intron | 35.0% | |
| TGCATGCAGAAAATTATTGG+AGG | - | chr4.1:2549997-2550016 | MS.gene049135:intron | 35.0% | |
| TTAGAATGTACTTCCAGTTG+AGG | - | chr4.1:2547829-2547848 | MS.gene049135:CDS | 35.0% | |
| TTCTTCAGCCATTGAAGAAA+TGG | + | chr4.1:2546535-2546554 | None:intergenic | 35.0% | |
| TTTGTCAAGAAAAGGGAGAA+GGG | + | chr4.1:2549627-2549646 | None:intergenic | 35.0% | |
| ! | AAAGTACTTTGATGTCCTGA+TGG | + | chr4.1:2549270-2549289 | None:intergenic | 35.0% |
| ! | AACAAGCCAATTCCATTTTC+TGG | + | chr4.1:2548427-2548446 | None:intergenic | 35.0% |
| ! | AACATAACTGTGGGTTAAAG+AGG | + | chr4.1:2550619-2550638 | None:intergenic | 35.0% |
| ! | ATACCTGCATTGACCATTAA+TGG | + | chr4.1:2547205-2547224 | None:intergenic | 35.0% |
| ! | ATACTCAGTTTTCATTACGC+TGG | + | chr4.1:2549813-2549832 | None:intergenic | 35.0% |
| ! | ATGAAAGGATGATTCTAGCT+AGG | - | chr4.1:2546795-2546814 | MS.gene049135:intron | 35.0% |
| ! | ATTGAGACCTTTTGCACTAA+AGG | + | chr4.1:2547274-2547293 | None:intergenic | 35.0% |
| ! | CAGCTTAAAGTGAGTCTTTT+TGG | - | chr4.1:2550203-2550222 | MS.gene049135:CDS | 35.0% |
| ! | GTTTTTCCACTTACTTTCTG+TGG | - | chr4.1:2548733-2548752 | MS.gene049135:CDS | 35.0% |
| ! | TAGATTCTAAAGAGTTTGCC+TGG | + | chr4.1:2550145-2550164 | None:intergenic | 35.0% |
| ! | TGTAGGATTTGCTCATATAG+CGG | - | chr4.1:2548453-2548472 | MS.gene049135:intron | 35.0% |
| ! | TTGTGTCGGTAATATAAGAC+AGG | - | chr4.1:2549043-2549062 | MS.gene049135:CDS | 35.0% |
| !! | AAAGGCACCGTTAATTCTAA+CGG | - | chr4.1:2546561-2546580 | MS.gene049135:intron | 35.0% |
| !! | CATACAAGTTTGTTGCCAAA+AGG | + | chr4.1:2548909-2548928 | None:intergenic | 35.0% |
| !! | GATGCAATATATGTTGGCTT+AGG | - | chr4.1:2548838-2548857 | MS.gene049135:intron | 35.0% |
| !! | GATGGAATAACAATGGGTTT+TGG | - | chr4.1:2548229-2548248 | MS.gene049135:intron | 35.0% |
| !! | TCTATTTCTAGTTGCTGAGT+GGG | - | chr4.1:2549566-2549585 | MS.gene049135:intron | 35.0% |
| !! | TTCTATTTCTAGTTGCTGAG+TGG | - | chr4.1:2549565-2549584 | MS.gene049135:intron | 35.0% |
| !!! | CTTATTTGGTTTTGAGTGGT+AGG | - | chr4.1:2547162-2547181 | MS.gene049135:intron | 35.0% |
| !!! | GTTTTGAGAGTCACCATTAA+TGG | - | chr4.1:2547189-2547208 | MS.gene049135:intron | 35.0% |
| AAAAGGAGAAATGGAAGGGT+TGG | + | chr4.1:2548597-2548616 | None:intergenic | 40.0% | |
| AAACATCTAGATGTGGTCTC+TGG | - | chr4.1:2548667-2548686 | MS.gene049135:intron | 40.0% | |
| AAGAGTTTGCCTGGTTTAGA+AGG | + | chr4.1:2550136-2550155 | None:intergenic | 40.0% | |
| AAGCACACCTTTAGTGCAAA+AGG | - | chr4.1:2547264-2547283 | MS.gene049135:intron | 40.0% | |
| AATGAACCTAACTTTCCCGA+TGG | + | chr4.1:2548877-2548896 | None:intergenic | 40.0% | |
| AGACCTCAATCACATCTGAT+AGG | + | chr4.1:2547538-2547557 | None:intergenic | 40.0% | |
| AGAGACACTGAACTTCCTTA+TGG | - | chr4.1:2547934-2547953 | MS.gene049135:CDS | 40.0% | |
| AGCAAGATATGAGTCAAACC+CGG | - | chr4.1:2549291-2549310 | MS.gene049135:intron | 40.0% | |
| AGTACTTTGATGTCCTGATG+GGG | + | chr4.1:2549268-2549287 | None:intergenic | 40.0% | |
| ATAAGGAAGTTCAGTGTCTC+TGG | + | chr4.1:2547935-2547954 | None:intergenic | 40.0% | |
| ATCATACATACCGGCACAAA+AGG | + | chr4.1:2547032-2547051 | None:intergenic | 40.0% | |
| ATCTTGGATTGACTGGAAAG+AGG | - | chr4.1:2548800-2548819 | MS.gene049135:CDS | 40.0% | |
| ATGGCTGAAGAATTCGTCAA+AGG | - | chr4.1:2546543-2546562 | MS.gene049135:intron | 40.0% | |
| CAACCTATCAGATGTGATTG+AGG | - | chr4.1:2547532-2547551 | MS.gene049135:CDS | 40.0% | |
| CACACACAGAAACATCCATA+AGG | + | chr4.1:2547952-2547971 | None:intergenic | 40.0% | |
| CATCTGCTTCTCTCATTACA+GGG | - | chr4.1:2547880-2547899 | MS.gene049135:CDS | 40.0% | |
| CCAACATATATTGCATCTGC+TGG | + | chr4.1:2548835-2548854 | None:intergenic | 40.0% | |
| CCAGCAGATGCAATATATGT+TGG | - | chr4.1:2548832-2548851 | MS.gene049135:intron | 40.0% | |
| CCCAAATGTCAAATGTGTTC+TGG | - | chr4.1:2546985-2547004 | MS.gene049135:intron | 40.0% | |
| CCTCTGTTATGATACGATAG+CGG | + | chr4.1:2548276-2548295 | None:intergenic | 40.0% | |
| CGAGATCTTAGTTTATCTGC+AGG | - | chr4.1:2547479-2547498 | MS.gene049135:intron | 40.0% | |
| GAGAAGCAGATGCAATTCAA+AGG | + | chr4.1:2547872-2547891 | None:intergenic | 40.0% | |
| GAGATTCCACAGAAAGTAAG+TGG | + | chr4.1:2548742-2548761 | None:intergenic | 40.0% | |
| GATCTTAGTTTATCTGCAGG+CGG | - | chr4.1:2547482-2547501 | MS.gene049135:intron | 40.0% | |
| GCAATGCCAGAAAATGGAAT+TGG | - | chr4.1:2548418-2548437 | MS.gene049135:intron | 40.0% | |
| GCACAAAAAGGAGAAATGGA+AGG | + | chr4.1:2548602-2548621 | None:intergenic | 40.0% | |
| GGCAACACCGTTAGAATTAA+CGG | + | chr4.1:2546571-2546590 | None:intergenic | 40.0% | |
| GGGAAAGTTAGGTTCATTCA+AGG | - | chr4.1:2548879-2548898 | MS.gene049135:intron | 40.0% | |
| GGTTGTTGCTGAAATACAGA+AGG | - | chr4.1:2547237-2547256 | MS.gene049135:intron | 40.0% | |
| GTTCTTGCAATGCCAGAAAA+TGG | - | chr4.1:2548412-2548431 | MS.gene049135:CDS | 40.0% | |
| GTTTGTCAAGAAAAGGGAGA+AGG | + | chr4.1:2549628-2549647 | None:intergenic | 40.0% | |
| TCACCATTAATGGTCAATGC+AGG | - | chr4.1:2547199-2547218 | MS.gene049135:intron | 40.0% | |
| TCTTGGATTGACTGGAAAGA+GGG | - | chr4.1:2548801-2548820 | MS.gene049135:CDS | 40.0% | |
| TGCTCCTAAGGGTTTAAAGA+CGG | + | chr4.1:2550756-2550775 | None:intergenic | 40.0% | |
| TTCTGAACAAACTACGCTGA+TGG | + | chr4.1:2549154-2549173 | None:intergenic | 40.0% | |
| TTCTGTGGAATCTCCGAATT+CGG | - | chr4.1:2548748-2548767 | MS.gene049135:CDS | 40.0% | |
| TTGTTCGCCAAACCAAGTAA+AGG | - | chr4.1:2549963-2549982 | MS.gene049135:CDS | 40.0% | |
| TTTCCGACCCATTTCTTCAA+TGG | - | chr4.1:2546524-2546543 | MS.gene049135:intron | 40.0% | |
| ! | ATACATTGGCCTGATTGTGT+CGG | - | chr4.1:2549029-2549048 | MS.gene049135:CDS | 40.0% |
| ! | GCAAAGAAGGATGATGATGA+TGG | + | chr4.1:2547382-2547401 | None:intergenic | 40.0% |
| ! | GCAGATAGATTGGTCATGTT+TGG | + | chr4.1:2550480-2550499 | None:intergenic | 40.0% |
| ! | TTCCAGTTGAGGTTCTAATG+AGG | - | chr4.1:2547840-2547859 | MS.gene049135:CDS | 40.0% |
| ! | TTTTCATTACGCTGGTAAGC+TGG | + | chr4.1:2549805-2549824 | None:intergenic | 40.0% |
| !! | GAGCTCAAATACTGGTTCTA+TGG | - | chr4.1:2550511-2550530 | MS.gene049135:intron | 40.0% |
| !!! | GGTTTTGGAATTGGCTTATC+TGG | - | chr4.1:2548244-2548263 | MS.gene049135:intron | 40.0% |
| !!! | TTGGTTTTGAGTGGTAGGTA+AGG | - | chr4.1:2547167-2547186 | MS.gene049135:intron | 40.0% |
| AACGTGGAAACCATCAAGGT+TGG | - | chr4.1:2550703-2550722 | MS.gene049135:CDS | 45.0% | |
| AGGAACACACTATGTGCCAT+CGG | - | chr4.1:2548858-2548877 | MS.gene049135:intron | 45.0% | |
| ATGGGTCGGAAAGAGAAGAA+AGG | + | chr4.1:2546516-2546535 | None:intergenic | 45.0% | |
| ATTCTCGATGACCGCTTACT+TGG | - | chr4.1:2547452-2547471 | MS.gene049135:intron | 45.0% | |
| CAGCCATTGAAGAAATGGGT+CGG | + | chr4.1:2546530-2546549 | None:intergenic | 45.0% | |
| CCGCTATCGTATCATAACAG+AGG | - | chr4.1:2548273-2548292 | MS.gene049135:intron | 45.0% | |
| CTGCGACATGATTTCGTAGA+AGG | - | chr4.1:2549854-2549873 | MS.gene049135:intron | 45.0% | |
| CTTTAAACCCTTAGGAGCAG+AGG | - | chr4.1:2550757-2550776 | MS.gene049135:CDS | 45.0% | |
| GAAGCCGTCTTTAAACCCTT+AGG | - | chr4.1:2550749-2550768 | MS.gene049135:CDS | 45.0% | |
| GATCTCGGTTACCAAGTAAG+CGG | + | chr4.1:2547466-2547485 | None:intergenic | 45.0% | |
| GCATCTGCTTCTCTCATTAC+AGG | - | chr4.1:2547879-2547898 | MS.gene049135:CDS | 45.0% | |
| GGTGCTTATCTTGGATTGAC+TGG | - | chr4.1:2548793-2548812 | MS.gene049135:CDS | 45.0% | |
| TATGTGCCATCGGGAAAGTT+AGG | - | chr4.1:2548868-2548887 | MS.gene049135:intron | 45.0% | |
| TATTGGGGGAGCTCAAATAC+TGG | - | chr4.1:2550503-2550522 | MS.gene049135:intron | 45.0% | |
| TCAACTTCCTCCAACCTTGA+TGG | + | chr4.1:2550716-2550735 | None:intergenic | 45.0% | |
| TTTAACTGTGCCTCACTGTC+CGG | + | chr4.1:2549313-2549332 | None:intergenic | 45.0% | |
| ! | AACCTTGATGGTTTCCACGT+TGG | + | chr4.1:2550704-2550723 | None:intergenic | 45.0% |
| ! | ACCTTGATGGTTTCCACGTT+GGG | + | chr4.1:2550703-2550722 | None:intergenic | 45.0% |
| ! | CTGGAAGTACATTCTAACCC+AGG | + | chr4.1:2547826-2547845 | None:intergenic | 45.0% |
| ! | GGAATTGGCTTATCTGGTCA+TGG | - | chr4.1:2548250-2548269 | MS.gene049135:intron | 45.0% |
| ! | TTCATGGCGTTGAGAGCTTT+GGG | + | chr4.1:2546612-2546631 | None:intergenic | 45.0% |
| ! | TTCATTCAAGGAGGCCCTTT+TGG | - | chr4.1:2548891-2548910 | MS.gene049135:intron | 45.0% |
| !! | ACTCTTGCTCGGTGTTAGTT+TGG | - | chr4.1:2547800-2547819 | MS.gene049135:CDS | 45.0% |
| !! | ATTGGCTTGTTCCCAGATGT+AGG | - | chr4.1:2548436-2548455 | MS.gene049135:intron | 45.0% |
| !! | GATGATGATGATGGCGAAAG+CGG | + | chr4.1:2547373-2547392 | None:intergenic | 45.0% |
| !! | AAAAAAAATATGTAAAATTT+GGG | - | chr4.1:2546752-2546771 | MS.gene049135:intron | 5.0% |
| !! | AAAATTATAATATAATACAT+TGG | - | chr4.1:2549015-2549034 | MS.gene049135:CDS | 5.0% |
| !!! | GTATTATATTATAATTTTAT+TGG | + | chr4.1:2549013-2549032 | None:intergenic | 5.0% |
| AAACCCTTAGGAGCAGAGGT+GGG | - | chr4.1:2550761-2550780 | MS.gene049135:CDS | 50.0% | |
| AAGACGGCTTCAACCTCACT+TGG | + | chr4.1:2550740-2550759 | None:intergenic | 50.0% | |
| ACCCAACGTGGAAACCATCA+AGG | - | chr4.1:2550699-2550718 | MS.gene049135:CDS | 50.0% | |
| AGGAAGTTCAGTGTCTCTGG+AGG | + | chr4.1:2547932-2547951 | None:intergenic | 50.0% | |
| AGGTGTCCGAGCAGTATTAG+TGG | - | chr4.1:2549874-2549893 | MS.gene049135:intron | 50.0% | |
| ATTCACTGCAGAACCCAACG+TGG | - | chr4.1:2550687-2550706 | MS.gene049135:CDS | 50.0% | |
| CATATAGCGGCTCAAAGTCC+AGG | - | chr4.1:2548466-2548485 | MS.gene049135:intron | 50.0% | |
| CATTAGAGTCAGTGCTCGAC+TGG | + | chr4.1:2549414-2549433 | None:intergenic | 50.0% | |
| CTGACTGCAGGTGCTTATCT+TGG | - | chr4.1:2548784-2548803 | MS.gene049135:CDS | 50.0% | |
| GCATTGCAAGAACAGTCCTC+TGG | + | chr4.1:2548405-2548424 | None:intergenic | 50.0% | |
| GGAACACACTATGTGCCATC+GGG | - | chr4.1:2548859-2548878 | MS.gene049135:intron | 50.0% | |
| GGCCTCATTAGAACCTCAAC+TGG | + | chr4.1:2547845-2547864 | None:intergenic | 50.0% | |
| GTGAATTATCCACGGTGAGC+AGG | - | chr4.1:2549691-2549710 | MS.gene049135:intron | 50.0% | |
| GTGGAAACCATCAAGGTTGG+AGG | - | chr4.1:2550706-2550725 | MS.gene049135:CDS | 50.0% | |
| TAAACCCTTAGGAGCAGAGG+TGG | - | chr4.1:2550760-2550779 | MS.gene049135:CDS | 50.0% | |
| TAGTTCTCAGGATCCCCATC+AGG | - | chr4.1:2549252-2549271 | MS.gene049135:intron | 50.0% | |
| TGGGCTAATGAAGCTCTCCA+AGG | - | chr4.1:2549585-2549604 | MS.gene049135:intron | 50.0% | |
| TTAACTGTGCCTCACTGTCC+GGG | + | chr4.1:2549312-2549331 | None:intergenic | 50.0% | |
| TTACCAACAGCTCCTTCTCC+TGG | + | chr4.1:2548487-2548506 | None:intergenic | 50.0% | |
| TTTGCCTAGTGCAGAGGCAA+CGG | + | chr4.1:2549664-2549683 | None:intergenic | 50.0% | |
| ! | CTGAGTATCGCATTGCCTTG+AGG | - | chr4.1:2549825-2549844 | MS.gene049135:intron | 50.0% |
| ! | GGAGGAAGTTGATCCAAGTG+AGG | - | chr4.1:2550724-2550743 | MS.gene049135:CDS | 50.0% |
| ! | GTTCATGGCGTTGAGAGCTT+TGG | + | chr4.1:2546613-2546632 | None:intergenic | 50.0% |
| ! | TCATGGCGTTGAGAGCTTTG+GGG | + | chr4.1:2546611-2546630 | None:intergenic | 50.0% |
| !! | CAGTCGAGCACTGACTCTAA+TGG | - | chr4.1:2549412-2549431 | MS.gene049135:intron | 50.0% |
| !!! | AGAAGGGAGCACCTTTTGCA+AGG | + | chr4.1:2549611-2549630 | None:intergenic | 50.0% |
| !!! | GTCGTTTTTGCCTAGTGCAG+AGG | + | chr4.1:2549670-2549689 | None:intergenic | 50.0% |
| AGTCCAGGAGAAGGAGCTGT+TGG | - | chr4.1:2548481-2548500 | MS.gene049135:intron | 55.0% | |
| ATGTCGCAGCGAAGACCTCA+AGG | + | chr4.1:2549843-2549862 | None:intergenic | 55.0% | |
| GAAAAGGAACCTGCTCACCG+TGG | + | chr4.1:2549703-2549722 | None:intergenic | 55.0% | |
| GCTCTCAACGCCATGAACCT+AGG | - | chr4.1:2546615-2546634 | MS.gene049135:intron | 55.0% | |
| GCTCTCCAAGGCCTTGCAAA+AGG | - | chr4.1:2549597-2549616 | MS.gene049135:intron | 55.0% | |
| TGAGTCAAACCCGGACAGTG+AGG | - | chr4.1:2549300-2549319 | MS.gene049135:intron | 55.0% | |
| ! | ATACCGGCACAAAAGGCACG+AGG | + | chr4.1:2547025-2547044 | None:intergenic | 55.0% |
| ! | GAGCACCTTTTGCAAGGCCT+TGG | + | chr4.1:2549605-2549624 | None:intergenic | 55.0% |
| ! | TACCGGCACAAAAGGCACGA+GGG | + | chr4.1:2547024-2547043 | None:intergenic | 55.0% |
| !! | GCTCGGTGTTAGTTTGGCCT+GGG | - | chr4.1:2547806-2547825 | MS.gene049135:CDS | 55.0% |
| !! | TGCTCGGTGTTAGTTTGGCC+TGG | - | chr4.1:2547805-2547824 | MS.gene049135:CDS | 55.0% |
| GCGGCTCAAAGTCCAGGAGA+AGG | - | chr4.1:2548472-2548491 | MS.gene049135:intron | 60.0% | |
| TCGCCCACCTCTGCTCCTAA+GGG | + | chr4.1:2550767-2550786 | None:intergenic | 60.0% | |
| TCTGCCGTTGCCTCTGCACT+AGG | - | chr4.1:2549657-2549676 | MS.gene049135:intron | 60.0% | |
| ! | ACCGGCACAAAAGGCACGAG+GGG | + | chr4.1:2547023-2547042 | None:intergenic | 60.0% |
| ! | TCCCCTCGTGCCTTTTGTGC+CGG | - | chr4.1:2547019-2547038 | MS.gene049135:intron | 60.0% |
| !! | GAGAGCTTTGGGGCGATCGA+GGG | + | chr4.1:2546601-2546620 | None:intergenic | 60.0% |
| !! | TGAGAGCTTTGGGGCGATCG+AGG | + | chr4.1:2546602-2546621 | None:intergenic | 60.0% |
| CTCGCCCACCTCTGCTCCTA+AGG | + | chr4.1:2550768-2550787 | None:intergenic | 65.0% | |
| GGGGCGATCGAGGGTGAGAA+GGG | + | chr4.1:2546592-2546611 | None:intergenic | 65.0% | |
| TGGGGCGATCGAGGGTGAGA+AGG | + | chr4.1:2546593-2546612 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 2546429 | 2550799 | 2546429 | ID=MS.gene049135 |
| chr4.1 | mRNA | 2546429 | 2550799 | 2546429 | ID=MS.gene049135.t1;Parent=MS.gene049135 |
| chr4.1 | exon | 2550592 | 2550799 | 2550592 | ID=MS.gene049135.t1.exon1;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2550592 | 2550799 | 2550592 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2550188 | 2550289 | 2550188 | ID=MS.gene049135.t1.exon2;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2550188 | 2550289 | 2550188 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2549943 | 2550007 | 2549943 | ID=MS.gene049135.t1.exon3;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2549943 | 2550007 | 2549943 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2548934 | 2549068 | 2548934 | ID=MS.gene049135.t1.exon4;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2548934 | 2549068 | 2548934 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2548726 | 2548822 | 2548726 | ID=MS.gene049135.t1.exon5;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2548726 | 2548822 | 2548726 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2548305 | 2548434 | 2548305 | ID=MS.gene049135.t1.exon6;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2548305 | 2548434 | 2548305 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2547795 | 2547973 | 2547795 | ID=MS.gene049135.t1.exon7;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2547795 | 2547973 | 2547795 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2547524 | 2547651 | 2547524 | ID=MS.gene049135.t1.exon8;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2547524 | 2547651 | 2547524 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2547321 | 2547422 | 2547321 | ID=MS.gene049135.t1.exon9;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2547321 | 2547422 | 2547321 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| chr4.1 | exon | 2546429 | 2546530 | 2546429 | ID=MS.gene049135.t1.exon10;Parent=MS.gene049135.t1 |
| chr4.1 | CDS | 2546429 | 2546530 | 2546429 | ID=cds.MS.gene049135.t1;Parent=MS.gene049135.t1 |
| Gene Sequence |
| Protein sequence |
