Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031529.t1 | XP_003607703.1 | 95.2 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 2.10E-60 | 241.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031529.t1 | Q8LDI5 | 58.6 | 111 | 46 | 0 | 10 | 120 | 2 | 112 | 9.9e-35 | 147.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031529.t1 | G7JF34 | 95.2 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 1.5e-60 | 241.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene031529 | MS.gene69451 | PPI |
MS.gene031529 | MS.gene24227 | PPI |
MS.gene031529 | MS.gene79654 | PPI |
MS.gene031529 | MS.gene014475 | PPI |
MS.gene031529 | MS.gene74758 | PPI |
MS.gene031529 | MS.gene064706 | PPI |
MS.gene031529 | MS.gene043301 | PPI |
MS.gene031529 | MS.gene42302 | PPI |
MS.gene031529 | MS.gene27271 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031529.t1 | MTR_4g081380 | 95.238 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 2.92e-87 | 249 |
MS.gene031529.t1 | MTR_2g082590 | 70.492 | 122 | 36 | 0 | 1 | 122 | 1 | 122 | 1.62e-62 | 187 |
MS.gene031529.t1 | MTR_2g082590 | 63.704 | 135 | 36 | 1 | 1 | 122 | 1 | 135 | 2.71e-59 | 179 |
MS.gene031529.t1 | MTR_2g010750 | 59.322 | 118 | 48 | 0 | 6 | 123 | 5 | 122 | 1.74e-49 | 154 |
MS.gene031529.t1 | MTR_4g081380 | 90.909 | 77 | 7 | 0 | 1 | 77 | 1 | 77 | 3.79e-47 | 147 |
MS.gene031529.t1 | MTR_2g010750 | 57.333 | 75 | 32 | 0 | 6 | 80 | 5 | 79 | 4.89e-27 | 96.3 |
MS.gene031529.t1 | MTR_7g009070 | 41.237 | 97 | 57 | 0 | 17 | 113 | 33 | 129 | 4.43e-25 | 92.8 |
MS.gene031529.t1 | MTR_7g073680 | 35.294 | 102 | 66 | 0 | 12 | 113 | 26 | 127 | 1.27e-22 | 86.7 |
MS.gene031529.t1 | MTR_1g023140 | 36.893 | 103 | 65 | 0 | 8 | 110 | 4 | 106 | 5.40e-22 | 84.3 |
MS.gene031529.t1 | MTR_3g112410 | 35.455 | 110 | 67 | 1 | 1 | 110 | 1 | 106 | 1.11e-21 | 83.6 |
MS.gene031529.t1 | MTR_8g005320 | 34.343 | 99 | 65 | 0 | 15 | 113 | 31 | 129 | 3.21e-21 | 82.8 |
MS.gene031529.t1 | MTR_5g021180 | 36.449 | 107 | 68 | 0 | 8 | 114 | 6 | 112 | 3.89e-21 | 82.0 |
MS.gene031529.t1 | MTR_8g006685 | 34.343 | 99 | 65 | 0 | 15 | 113 | 100 | 198 | 2.71e-20 | 82.4 |
MS.gene031529.t1 | MTR_8g006560 | 34.343 | 99 | 65 | 0 | 15 | 113 | 100 | 198 | 2.71e-20 | 82.4 |
MS.gene031529.t1 | MTR_5g037950 | 38.938 | 113 | 65 | 2 | 4 | 114 | 13 | 123 | 2.35e-19 | 77.8 |
MS.gene031529.t1 | MTR_8g107460 | 32.075 | 106 | 72 | 0 | 8 | 113 | 252 | 357 | 1.66e-18 | 79.7 |
MS.gene031529.t1 | MTR_5g037930 | 33.333 | 105 | 70 | 0 | 10 | 114 | 20 | 124 | 6.26e-16 | 68.9 |
MS.gene031529.t1 | MTR_5g037890 | 34.286 | 105 | 69 | 0 | 10 | 114 | 18 | 122 | 1.61e-15 | 67.8 |
MS.gene031529.t1 | MTR_1g098660 | 33.721 | 86 | 55 | 2 | 35 | 118 | 81 | 166 | 3.01e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene031529.t1 | AT1G11530 | 58.036 | 112 | 47 | 0 | 10 | 121 | 2 | 113 | 1.43e-48 | 151 |
MS.gene031529.t1 | AT3G51030 | 39.623 | 106 | 64 | 0 | 8 | 113 | 4 | 109 | 4.65e-24 | 89.4 |
MS.gene031529.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.22e-23 | 89.4 |
MS.gene031529.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.22e-23 | 89.4 |
MS.gene031529.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.22e-23 | 89.4 |
MS.gene031529.t1 | AT5G39950 | 37.037 | 108 | 68 | 0 | 6 | 113 | 21 | 128 | 1.54e-23 | 89.0 |
MS.gene031529.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.68e-23 | 89.4 |
MS.gene031529.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.68e-23 | 89.4 |
MS.gene031529.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.68e-23 | 89.4 |
MS.gene031529.t1 | AT1G45145 | 34.286 | 105 | 69 | 0 | 9 | 113 | 4 | 108 | 6.82e-23 | 86.7 |
MS.gene031529.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 9 | 112 | 39 | 142 | 1.09e-22 | 87.0 |
MS.gene031529.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 9 | 112 | 39 | 142 | 1.09e-22 | 87.0 |
MS.gene031529.t1 | AT1G59730 | 34.615 | 104 | 68 | 0 | 12 | 115 | 23 | 126 | 1.34e-21 | 83.6 |
MS.gene031529.t1 | AT5G42980 | 34.906 | 106 | 69 | 0 | 9 | 114 | 4 | 109 | 1.65e-19 | 78.2 |
MS.gene031529.t1 | AT1G19730 | 31.776 | 107 | 72 | 1 | 8 | 113 | 4 | 110 | 9.75e-19 | 76.3 |
MS.gene031529.t1 | AT1G69880 | 29.524 | 105 | 74 | 0 | 12 | 116 | 39 | 143 | 3.10e-17 | 73.2 |
MS.gene031529.t1 | AT3G17880 | 34.211 | 114 | 71 | 1 | 11 | 124 | 264 | 373 | 5.86e-16 | 72.8 |
MS.gene031529.t1 | AT3G17880 | 34.211 | 114 | 71 | 1 | 11 | 124 | 271 | 380 | 6.83e-16 | 72.8 |
MS.gene031529.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 12 | 116 | 86 | 192 | 2.58e-12 | 61.2 |
MS.gene031529.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 12 | 116 | 86 | 192 | 2.58e-12 | 61.2 |
Find 29 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTACAAGGCAACCTTTAT+TGG | 0.239798 | 4.2:-28152457 | None:intergenic |
GTGCAAATCCTGATGAAATT+AGG | 0.320699 | 4.2:+28153839 | MS.gene031529:CDS |
TCCTCCACTCATCAACAAAA+AGG | 0.360970 | 4.2:-28153794 | None:intergenic |
ATCACTGAAGCTACCAATAA+AGG | 0.364334 | 4.2:+28152444 | MS.gene031529:CDS |
GTGATTTGGAGGAATGAGTT+TGG | 0.374475 | 4.2:-28153885 | None:intergenic |
CATGGCATTGATTTCCAACT+TGG | 0.380007 | 4.2:-28153767 | None:intergenic |
CATCATCCATCAGAGTGATT+TGG | 0.391841 | 4.2:-28153899 | None:intergenic |
GGTGGATGTGGACGAAGTTA+AGG | 0.395797 | 4.2:+28152734 | MS.gene031529:CDS |
GATGCTAATTCTTCAAAGAA+AGG | 0.438089 | 4.2:-28152684 | None:intergenic |
GGCATTGATTTCCAACTTGG+AGG | 0.441850 | 4.2:-28153764 | None:intergenic |
CAGAAAGAGGACATCTTGAT+AGG | 0.447661 | 4.2:-28152709 | None:intergenic |
AAAGGGTTCATAGCAATAGA+AGG | 0.450955 | 4.2:-28152666 | None:intergenic |
CCTCTTTCTGAAGGTGGATG+TGG | 0.473122 | 4.2:+28152722 | MS.gene031529:CDS |
GCACCAACAGCTTTCTCCAC+TGG | 0.488674 | 4.2:-28153820 | None:intergenic |
ATGCTAATTCTTCAAAGAAA+GGG | 0.500184 | 4.2:-28152683 | None:intergenic |
CCACATCCACCTTCAGAAAG+AGG | 0.505638 | 4.2:-28152722 | None:intergenic |
ATCCTGATGAAATTAGGAAA+AGG | 0.511549 | 4.2:+28153845 | MS.gene031529:CDS |
CATCCATCAGAGTGATTTGG+AGG | 0.522008 | 4.2:-28153896 | None:intergenic |
ATTCCTCCAAATCACTCTGA+TGG | 0.522941 | 4.2:+28153893 | MS.gene031529:CDS |
AAATTGACTCAAGAAAATCA+TGG | 0.550454 | 4.2:+28152412 | MS.gene031529:CDS |
AATTGACTCAAGAAAATCAT+GGG | 0.553360 | 4.2:+28152413 | MS.gene031529:CDS |
TATTGGTAGCTTCAGTGATG+TGG | 0.558401 | 4.2:-28152440 | None:intergenic |
TCAAGATGTCCTCTTTCTGA+AGG | 0.562276 | 4.2:+28152713 | MS.gene031529:CDS |
AGATGTCCTCTTTCTGAAGG+TGG | 0.570239 | 4.2:+28152716 | MS.gene031529:CDS |
TGATGAAATTAGGAAAAGGA+TGG | 0.577508 | 4.2:+28153849 | MS.gene031529:CDS |
CTAGGAAGTAGCCTCCAAGT+TGG | 0.602024 | 4.2:+28153753 | MS.gene031529:intron |
AATCCAGTGGAGAAAGCTGT+TGG | 0.602305 | 4.2:+28153817 | MS.gene031529:CDS |
AAAGAGGACATCTTGATAGG+TGG | 0.610226 | 4.2:-28152706 | None:intergenic |
GATGAGTGGAGGAAATCCAG+TGG | 0.727295 | 4.2:+28153804 | MS.gene031529:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCTATATAGTTATATTAAT+AGG | + | chr4.2:28152580-28152599 | MS.gene031529:intron | 10.0% |
!! | ATTACATAACATATTATTAT+TGG | - | chr4.2:28153636-28153655 | None:intergenic | 10.0% |
!! | TAAATAAAAAAATACATGTA+GGG | + | chr4.2:28153535-28153554 | MS.gene031529:intron | 10.0% |
!! | AATAAACAATTTGAGAATAT+TGG | - | chr4.2:28153127-28153146 | None:intergenic | 15.0% |
!! | ACAAATTATATTGAAACAAA+AGG | - | chr4.2:28153378-28153397 | None:intergenic | 15.0% |
!! | CATGTAAAATTATAACAATT+GGG | + | chr4.2:28152527-28152546 | MS.gene031529:intron | 15.0% |
!! | CTAAATAAAAAAATACATGT+AGG | + | chr4.2:28153534-28153553 | MS.gene031529:intron | 15.0% |
!! | TTTAAAAACACAAATGAAAA+AGG | - | chr4.2:28152793-28152812 | None:intergenic | 15.0% |
!!! | AATATAATTTGTGAATTTTC+TGG | + | chr4.2:28153386-28153405 | MS.gene031529:intron | 15.0% |
!! | AATTATATTGAAACAAAAGG+TGG | - | chr4.2:28153375-28153394 | None:intergenic | 20.0% |
!! | ATGCCATTATTATAAGTTAA+AGG | - | chr4.2:28153237-28153256 | None:intergenic | 20.0% |
!! | GCATGTAAAATTATAACAAT+TGG | + | chr4.2:28152526-28152545 | MS.gene031529:intron | 20.0% |
!! | TTTGTTCATAAAATATTTGC+AGG | + | chr4.2:28152611-28152630 | MS.gene031529:intron | 20.0% |
!!! | ATTAGTTTAGAAAATAAGCA+TGG | - | chr4.2:28153514-28153533 | None:intergenic | 20.0% |
!!! | GAAGTTAAGGTAATTTTTTA+TGG | + | chr4.2:28152747-28152766 | MS.gene031529:intron | 20.0% |
!!! | TAAAATTGATGATACTTACA+AGG | - | chr4.2:28152473-28152492 | None:intergenic | 20.0% |
!!! | TGTAAGTATCATCAATTTTA+TGG | + | chr4.2:28152473-28152492 | MS.gene031529:intron | 20.0% |
! | AAACTAACATGTAGTTTCTT+TGG | - | chr4.2:28153045-28153064 | None:intergenic | 25.0% |
! | ATGCTAATTCTTCAAAGAAA+GGG | - | chr4.2:28152686-28152705 | None:intergenic | 25.0% |
! | CATAAAATATTTGCAGGTTA+TGG | + | chr4.2:28152617-28152636 | MS.gene031529:intron | 25.0% |
! | TTATAACAATTGGGTGATTA+TGG | + | chr4.2:28152536-28152555 | MS.gene031529:intron | 25.0% |
! | TTGTAGATGATATCAATATG+TGG | + | chr4.2:28153265-28153284 | MS.gene031529:intron | 25.0% |
!! | AAATTGACTCAAGAAAATCA+TGG | + | chr4.2:28152412-28152431 | MS.gene031529:CDS | 25.0% |
!! | AATTGACTCAAGAAAATCAT+GGG | + | chr4.2:28152413-28152432 | MS.gene031529:CDS | 25.0% |
!! | ACGCTTTCAATTTAAAATGT+CGG | - | chr4.2:28152854-28152873 | None:intergenic | 25.0% |
!! | ATGGAAGAAACTGTTTATTT+TGG | + | chr4.2:28153448-28153467 | MS.gene031529:intron | 25.0% |
!! | CTTTTATCATCATCCTTTTT+AGG | + | chr4.2:28153305-28153324 | MS.gene031529:intron | 25.0% |
!! | GAGCCTTTAACTTATAATAA+TGG | + | chr4.2:28153231-28153250 | MS.gene031529:intron | 25.0% |
!! | TTAACTAACTACCTTTTGTT+TGG | + | chr4.2:28153703-28153722 | MS.gene031529:intron | 25.0% |
!!! | AATTTTTTATGGTCTATGGA+GGG | + | chr4.2:28152758-28152777 | MS.gene031529:intron | 25.0% |
!!! | AGGTAATTTTTTATGGTCTA+TGG | + | chr4.2:28152754-28152773 | MS.gene031529:intron | 25.0% |
!!! | TAATTTTTTATGGTCTATGG+AGG | + | chr4.2:28152757-28152776 | MS.gene031529:intron | 25.0% |
ATCCTGATGAAATTAGGAAA+AGG | + | chr4.2:28153845-28153864 | MS.gene031529:CDS | 30.0% | |
GATGCTAATTCTTCAAAGAA+AGG | - | chr4.2:28152687-28152706 | None:intergenic | 30.0% | |
TATGATATCTCCTTCTATGT+TGG | + | chr4.2:28153064-28153083 | MS.gene031529:intron | 30.0% | |
TCTCCACTCAACATAAAAAT+TGG | - | chr4.2:28153421-28153440 | None:intergenic | 30.0% | |
TGATGAAATTAGGAAAAGGA+TGG | + | chr4.2:28153849-28153868 | MS.gene031529:CDS | 30.0% | |
! | AAACTGAAAGTTTAGTTCGT+TGG | - | chr4.2:28152925-28152944 | None:intergenic | 30.0% |
! | ATCCTTTTCCTAATTTCATC+AGG | - | chr4.2:28153850-28153869 | None:intergenic | 30.0% |
! | ATGCCAATTTTTATGTTGAG+TGG | + | chr4.2:28153415-28153434 | MS.gene031529:intron | 30.0% |
! | CAGTTCAAAAAAGTACAGTT+CGG | + | chr4.2:28152985-28153004 | MS.gene031529:intron | 30.0% |
!! | TGGTTCATTTTTCTGCTTAT+TGG | + | chr4.2:28152637-28152656 | MS.gene031529:CDS | 30.0% |
!! | TTATCATCATCCTTTTTAGG+TGG | + | chr4.2:28153308-28153327 | MS.gene031529:intron | 30.0% |
!!! | ATTTTTTATGGTCTATGGAG+GGG | + | chr4.2:28152759-28152778 | MS.gene031529:intron | 30.0% |
AAAGGGTTCATAGCAATAGA+AGG | - | chr4.2:28152669-28152688 | None:intergenic | 35.0% | |
ACAACAATCATGCATCAAAG+AGG | - | chr4.2:28153659-28153678 | None:intergenic | 35.0% | |
ACTTACAAGGCAACCTTTAT+TGG | - | chr4.2:28152460-28152479 | None:intergenic | 35.0% | |
ATCACTGAAGCTACCAATAA+AGG | + | chr4.2:28152444-28152463 | MS.gene031529:CDS | 35.0% | |
ATCTCCTTCTATGTTGGAAA+TGG | + | chr4.2:28153070-28153089 | MS.gene031529:intron | 35.0% | |
CATAGAACAGTCCAAACAAA+AGG | - | chr4.2:28153717-28153736 | None:intergenic | 35.0% | |
GTGAACTAATTGTCACAGTT+AGG | + | chr4.2:28152945-28152964 | MS.gene031529:intron | 35.0% | |
GTGCAAATCCTGATGAAATT+AGG | + | chr4.2:28153839-28153858 | MS.gene031529:CDS | 35.0% | |
! | TGAGTCAATTTTCACAACCT+TGG | - | chr4.2:28152403-28152422 | None:intergenic | 35.0% |
! | TGCACGGATAATGGTATATA+TGG | - | chr4.2:28152828-28152847 | None:intergenic | 35.0% |
!! | TGCTTTTTGTGACTCTATCT+AGG | + | chr4.2:28153735-28153754 | MS.gene031529:intron | 35.0% |
!! | TTTAAAATGTCGGTGTTGCA+CGG | - | chr4.2:28152844-28152863 | None:intergenic | 35.0% |
!!! | AGTCTCTGACATGTTTTAGT+AGG | + | chr4.2:28152878-28152897 | MS.gene031529:intron | 35.0% |
!!! | ATCCTTTTTAGGTGGTTTCA+AGG | + | chr4.2:28153316-28153335 | MS.gene031529:intron | 35.0% |
!!! | TCCTTTTTAGGTGGTTTCAA+GGG | + | chr4.2:28153317-28153336 | MS.gene031529:intron | 35.0% |
AAAGAGGACATCTTGATAGG+TGG | - | chr4.2:28152709-28152728 | None:intergenic | 40.0% | |
AAGCATGCTATCACTAAGAC+TGG | + | chr4.2:28153204-28153223 | MS.gene031529:intron | 40.0% | |
ACAACAGCACAAAAAGTCCA+AGG | + | chr4.2:28152383-28152402 | MS.gene031529:CDS | 40.0% | |
ATAAACACAGCCCTCAAAGT+GGG | - | chr4.2:28153483-28153502 | None:intergenic | 40.0% | |
CAGAAAGAGGACATCTTGAT+AGG | - | chr4.2:28152712-28152731 | None:intergenic | 40.0% | |
CATCAACAAAAAGGTAGGCA+TGG | - | chr4.2:28153788-28153807 | None:intergenic | 40.0% | |
CCACTCATCAACAAAAAGGT+AGG | - | chr4.2:28153793-28153812 | None:intergenic | 40.0% | |
GGTGATTATGGTTTCAGCTT+CGG | + | chr4.2:28152548-28152567 | MS.gene031529:intron | 40.0% | |
TATAAACACAGCCCTCAAAG+TGG | - | chr4.2:28153484-28153503 | None:intergenic | 40.0% | |
TCAAGATGTCCTCTTTCTGA+AGG | + | chr4.2:28152713-28152732 | MS.gene031529:CDS | 40.0% | |
TCCCTTGAAACCACCTAAAA+AGG | - | chr4.2:28153321-28153340 | None:intergenic | 40.0% | |
TCCTCCACTCATCAACAAAA+AGG | - | chr4.2:28153797-28153816 | None:intergenic | 40.0% | |
TTGCATGTGCTGCAAATTAG+AGG | - | chr4.2:28153098-28153117 | None:intergenic | 40.0% | |
! | GTGATTTGGAGGAATGAGTT+TGG | - | chr4.2:28153888-28153907 | None:intergenic | 40.0% |
! | TACAGTTCGGTTTTCTGTGA+AGG | + | chr4.2:28152998-28153017 | MS.gene031529:intron | 40.0% |
! | TATTGGTAGCTTCAGTGATG+TGG | - | chr4.2:28152443-28152462 | None:intergenic | 40.0% |
! | TGCTATCACTAAGACTGGTT+TGG | + | chr4.2:28153209-28153228 | MS.gene031529:intron | 40.0% |
!! | ACCTTTTTGTTGATGAGTGG+AGG | + | chr4.2:28153793-28153812 | MS.gene031529:CDS | 40.0% |
!! | CATGGCATTGATTTCCAACT+TGG | - | chr4.2:28153770-28153789 | None:intergenic | 40.0% |
!! | CCTACCTTTTTGTTGATGAG+TGG | + | chr4.2:28153790-28153809 | MS.gene031529:CDS | 40.0% |
!! | CTGTGAAGGTAGTTCTGATT+CGG | + | chr4.2:28153012-28153031 | MS.gene031529:intron | 40.0% |
AATCCAGTGGAGAAAGCTGT+TGG | + | chr4.2:28153817-28153836 | MS.gene031529:CDS | 45.0% | |
AGTTCCTGTGACCTCAAAGT+GGG | - | chr4.2:28153164-28153183 | None:intergenic | 45.0% | |
GATTCCAAACCCCACTTTGA+GGG | + | chr4.2:28153151-28153170 | MS.gene031529:intron | 45.0% | |
GGCTCCATTTCCAACATAGA+AGG | - | chr4.2:28153077-28153096 | None:intergenic | 45.0% | |
GTTGAGTGGAGAGACTCTTA+TGG | + | chr4.2:28153429-28153448 | MS.gene031529:intron | 45.0% | |
TAAACACAGCCCTCAAAGTG+GGG | - | chr4.2:28153482-28153501 | None:intergenic | 45.0% | |
TGATTCCAAACCCCACTTTG+AGG | + | chr4.2:28153150-28153169 | MS.gene031529:intron | 45.0% | |
TTTATGGTCTATGGAGGGGA+AGG | + | chr4.2:28152763-28152782 | MS.gene031529:intron | 45.0% | |
! | AGATGTCCTCTTTCTGAAGG+TGG | + | chr4.2:28152716-28152735 | MS.gene031529:CDS | 45.0% |
!! | AGGTAGTTCTGATTCGGTTC+AGG | + | chr4.2:28153018-28153037 | MS.gene031529:intron | 45.0% |
!! | GGCATTGATTTCCAACTTGG+AGG | - | chr4.2:28153767-28153786 | None:intergenic | 45.0% |
!!! | TAAAAGATATTATTTTAATT+AGG | - | chr4.2:28153291-28153310 | None:intergenic | 5.0% |
CAGTTCCTGTGACCTCAAAG+TGG | - | chr4.2:28153165-28153184 | None:intergenic | 50.0% | |
CCACATCCACCTTCAGAAAG+AGG | - | chr4.2:28152725-28152744 | None:intergenic | 50.0% | |
CTAGGAAGTAGCCTCCAAGT+TGG | + | chr4.2:28153753-28153772 | MS.gene031529:intron | 50.0% | |
GATGAGTGGAGGAAATCCAG+TGG | + | chr4.2:28153804-28153823 | MS.gene031529:CDS | 50.0% | |
GGATTCCAAACCCCACTTTG+AGG | + | chr4.2:28153469-28153488 | MS.gene031529:intron | 50.0% | |
GGTGGATGTGGACGAAGTTA+AGG | + | chr4.2:28152734-28152753 | MS.gene031529:CDS | 50.0% | |
GTTCCTGTGACCTCAAAGTG+GGG | - | chr4.2:28153163-28153182 | None:intergenic | 50.0% | |
TGTGACCTCAAAGTGGGGTT+TGG | - | chr4.2:28153158-28153177 | None:intergenic | 50.0% | |
! | CCTCTTTCTGAAGGTGGATG+TGG | + | chr4.2:28152722-28152741 | MS.gene031529:CDS | 50.0% |
!! | AAACCCCACTTTGAGGTCAC+AGG | + | chr4.2:28153157-28153176 | MS.gene031529:intron | 50.0% |
!! | TGTCGGTGTTGCACGGATAA+TGG | - | chr4.2:28152837-28152856 | None:intergenic | 50.0% |
ACAGCCCTCAAAGTGGGGTT+TGG | - | chr4.2:28153477-28153496 | None:intergenic | 55.0% | |
GCACCAACAGCTTTCTCCAC+TGG | - | chr4.2:28153823-28153842 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 28152372 | 28153912 | 28152372 | ID=MS.gene031529 |
chr4.2 | mRNA | 28152372 | 28153912 | 28152372 | ID=MS.gene031529.t1;Parent=MS.gene031529 |
chr4.2 | exon | 28152372 | 28152473 | 28152372 | ID=MS.gene031529.t1.exon1;Parent=MS.gene031529.t1 |
chr4.2 | CDS | 28152372 | 28152473 | 28152372 | ID=cds.MS.gene031529.t1;Parent=MS.gene031529.t1 |
chr4.2 | exon | 28152633 | 28152755 | 28152633 | ID=MS.gene031529.t1.exon2;Parent=MS.gene031529.t1 |
chr4.2 | CDS | 28152633 | 28152755 | 28152633 | ID=cds.MS.gene031529.t1;Parent=MS.gene031529.t1 |
chr4.2 | exon | 28153757 | 28153912 | 28153757 | ID=MS.gene031529.t1.exon3;Parent=MS.gene031529.t1 |
chr4.2 | CDS | 28153757 | 28153912 | 28153757 | ID=cds.MS.gene031529.t1;Parent=MS.gene031529.t1 |
Gene Sequence |
Protein sequence |