AlfalfaGEDB | MS.gene033532

M. sativa cultivar XinJiangDaYe / MS.gene033532

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033532.t1	XP_003624238.1	95.1	616	28	2	1	615	1	615	2.80E-307	1063.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033532.t1	Q9ASS4	55.9	621	263	5	1	611	1	620	5.7e-160	565.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033532.t1	A2Q5X8	95.1	616	28	2	1	615	1	615	2.0e-307	1063.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene02446	MS.gene033532	PPI
MS.gene027143	MS.gene033532	PPI
MS.gene027150	MS.gene033532	PPI
MS.gene033532	MS.gene20554	PPI
MS.gene033532	MS.gene041376	PPI
MS.gene033532	MS.gene02437	PPI
MS.gene033532	MS.gene30580	PPI
MS.gene033532	MS.gene57987	PPI
MS.gene033532	MS.gene010536	PPI
MS.gene033532	MS.gene010517	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033532.t1	MTR_7g080810	96.916	616	17	2	1	615	1	615	0.0	1224
MS.gene033532.t1	MTR_8g010180	77.273	616	136	4	1	613	3	617	0.0	953
MS.gene033532.t1	MTR_6g009370	47.535	568	287	7	30	591	26	588	2.90e-179	521
MS.gene033532.t1	MTR_4g092530	44.463	587	260	10	29	580	8	563	4.49e-163	479
MS.gene033532.t1	MTR_4g092520	41.856	571	281	14	23	580	8	540	1.17e-137	413
MS.gene033532.t1	MTR_3g095100	40.458	524	271	12	102	591	651	1167	6.47e-108	352
MS.gene033532.t1	MTR_3g095100	33.987	153	74	3	66	191	399	551	1.31e-13	74.7
MS.gene033532.t1	MTR_1g100787	38.930	542	285	10	81	580	731	1268	1.32e-101	335
MS.gene033532.t1	MTR_1g100787	37.594	133	72	2	82	203	552	684	3.04e-12	70.5
MS.gene033532.t1	MTR_1g100787	32.667	150	94	3	66	209	463	611	1.38e-11	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033532.t1	AT5G48380	62.226	593	212	6	30	611	29	620	0.0	748
MS.gene033532.t1	AT3G28450	45.769	579	303	6	18	591	19	591	1.83e-179	521
MS.gene033532.t1	AT1G69990	44.561	570	295	7	29	589	18	575	3.37e-177	515
MS.gene033532.t1	AT1G27190	45.552	562	298	4	29	584	24	583	1.78e-176	514
MS.gene033532.t1	AT5G07280	39.350	554	285	13	56	580	661	1192	9.39e-106	346
MS.gene033532.t1	AT5G07280	36.508	126	74	2	89	209	460	584	7.91e-12	69.3
MS.gene033532.t1	AT5G07280	38.760	129	74	2	84	208	587	714	3.61e-11	67.0
MS.gene033532.t1	AT4G39400	38.246	536	290	13	97	599	650	1177	3.93e-103	338
MS.gene033532.t1	AT4G39400	36.806	144	67	3	71	191	411	553	5.26e-16	82.8
MS.gene033532.t1	AT3G13380	39.526	506	269	12	102	580	640	1135	1.50e-101	334

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Find 127 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATGTTATTGGGAC+TGG	0.457963	7.3:+26606924	MS.gene033532:CDS
AAACAATTATTTGCAGAATT+GGG	0.363885	7.3:+26604796	MS.gene033532:CDS
AAAGGAGATGTTTATAGCTT+TGG	0.303465	7.3:+26607467	MS.gene033532:CDS
AAATGGGCGAGAATTCTTAA+GGG	0.520284	7.3:+26605460	MS.gene033532:CDS
AAATTCTGGAGGAATTTGAC+CGG	0.582703	7.3:-26605146	None:intergenic
AAATTTCCTTTAAAAGTTTC+TGG	0.209161	7.3:-26607545	None:intergenic
AACAGTGCGACATCGTAACT+TGG	0.531048	7.3:+26607064	MS.gene033532:CDS
AACATAGTGGGTCTCTCCTT+TGG	0.354311	7.3:-26607701	None:intergenic
AAGATCCTGAAGGAAATAAA+TGG	0.242297	7.3:+26605443	MS.gene033532:CDS
AAGCTATAAACATCTCCTTT+AGG	0.373271	7.3:-26607464	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAGATGTTTATAGCTT+TGG	+	chr7.3:26607467-26607486	MS.gene033532:CDS	30.0%
AAATCAGTCCTTGAAATTGT+AGG	-	chr7.3:26606568-26606587	None:intergenic	30.0%
AAGATCCTGAAGGAAATAAA+TGG	+	chr7.3:26605443-26605462	MS.gene033532:CDS	30.0%
AAGCTATAAACATCTCCTTT+AGG	-	chr7.3:26607467-26607486	None:intergenic	30.0%
ACTTTCTAATATGGGACTTA+AGG	+	chr7.3:26604907-26604926	MS.gene033532:CDS	30.0%
AGAATGATTGAAATTGGCAA+AGG	-	chr7.3:26605976-26605995	None:intergenic	30.0%
AGAGCCAGACAAAAAAATTT+GGG	-	chr7.3:26606286-26606305	None:intergenic	30.0%
AGATCCTGAAGGAAATAAAT+GGG	+	chr7.3:26605444-26605463	MS.gene033532:CDS	30.0%
AGTGTACTAGACAAGAAAAA+TGG	-	chr7.3:26605942-26605961	None:intergenic	30.0%
CGACATCTTATGCTTAAAAA+GGG	+	chr7.3:26604751-26604770	MS.gene033532:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	26604659	26607859	26604659	ID=MS.gene033532
chr7.3	mRNA	26604659	26607859	26604659	ID=MS.gene033532.t1;Parent=MS.gene033532
chr7.3	exon	26604659	26605498	26604659	ID=MS.gene033532.t1.exon1;Parent=MS.gene033532.t1
chr7.3	CDS	26604659	26605498	26604659	ID=cds.MS.gene033532.t1;Parent=MS.gene033532.t1
chr7.3	exon	26606852	26607859	26606852	ID=MS.gene033532.t1.exon2;Parent=MS.gene033532.t1
chr7.3	CDS	26606852	26607859	26606852	ID=cds.MS.gene033532.t1;Parent=MS.gene033532.t1

Gene Sequence

>MS.gene033532

ATGGTTTTGAGTAGCAGAATTTTCAGTACTCCTATTATTGTTAGTTTCTCACTGCTAGTTATTAGTTGTGGCATCACCTACGGCACGGAGACCGACATCTTATGCTTAAAAAGGGTAAAAGAATCACTTAAAGACCCAAACAATTATTTGCAGAATTGGGATTTCAACAACAAAACTGAAGGGTCTATCTGCAAGTTCACTGGTGTTGAATGTTGGCATCCTGATGAAAATAGGGTTTTGAATCTCAAACTTTCTAATATGGGACTTAAGGGCGAGTTTCCTAGGGGTATTCAAAATTGTTCGAGCTTAACAGGATTAGATTTTTCGTTGAACAGCCTCTCTAAAACAATTCCGGCCGATGTATCTACCCTTATTGCCTTTGTGACCAATCTTGATCTATCTTCAAATGATTTCACCGGAGAGATCCCCGACTCACTTGCTAATTGTACCTATCTTAATAATCTTAAACTTGACCAGAACCAACTCACCGGTCAAATTCCTCCAGAATTTGCTGGACTCAATCGGCTTAAGACGTTTAGTGTTTCCAACAATCTTTTGTCAGGACAAGTTCCAAATTTTAGACAAGGTATAGTTACGGCAGATAGTTTTGCGAATAATTCAGGACTCTGCGGAGCTCCTTTAGATAGTTGCAAGAGTAAGTCTTCGAAGACTAACACTGCAGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTCTTGCAGCATTAGGAGTGGGCGTTGGATTGCTCTTCTTTGTACGCAGTGTTTCTCACAGGAAAAAGGAAGAAGATCCTGAAGGAAATAAATGGGCGAGAATTCTTAAGGGAACCAAGAAAATAAAGGTAAGCTAAATTGATGCATGGCTTGTATGTTCTTAGATAGATGAAAAGTAGTATTAGTTCTTATTACATATTGGATTTTATTATCCATTGAGCATATATTCTTTTTTCTTTTGAAAATATTCAATTATGGAAAACACCTTCAAGTATGTTAACTTTGTCAAAATTAACACATTTAAGTTGTAATAAACCAAAAATCGATCATTTAAAATTTAAACTACGTAATATATAAAGTCGATCATTAAATACTTAAAGAAATGATCCTTGGAATCACTGGCGGAACCATATTATCAAAATTACGAAGTGATCCTTGGAATCACTGGCGGAACCAGGGGGTGGCAAGGGGGAGCCTTGGCCACCCCATCTTAAAAAAAATAAATTTTTTTATACCCTAGAATTTGCATAATTAATTTGGCAGAATTGTAAATGATACTTTAATAAACCCATTTTTCTTGTCTAGTACACTTAACTTTGTCTCCTTTGCCAATTTCAATCATTCTTGTTCATTACATATTGTTAAATTGAGAAACAAGATGGAACCTGAGTTTCTAGCCGATAGCATGTCAGTTTATATTGAAAGGGAAATTAGTGCATGTATTAGTTTCGAGTCAATTATTGATGATTTCAAGTCACTCGGAAAGCGTAAAGTGTCTCTTTAAGTATTTAATGATCGACTTTATATATTATGTAGTTTAAATTTTAAATGATCGATTTTTGGTTTATTACAACTTAAATGTGTTATATGCAATATGATTTATATATTTTAGTTTATTTTGATGGCGGCCACCCCAAATTTTTTTGTCTGGCTCTGCCACTGCTTGGAATTGCAAAATATTTTTTTTTTAAAGAAGGAATTGCAAATAATTAATGAAGTTTGTTCTTTTGTCTGGATATGATATCAAATGCATCCCTAACATTATTCACTTCGTTTCAAATTCATCCCCGATAATACCAACTTAATGTCAATCTAGTCCCCGAAATATGAATGGAGGGACGATATGATTTAAATTTCGCAATTTCAGTGTTCATTTTGCAATATTGATAATGTGAGGGGCTAGATTGATACAGTCCTACAATTTCAAGGACTGATTTGGATATTTACTCTTTCAGTTGTAACATTTTTTAATATATAATACATCTTAATATCATTGATTATACTAATTTTGAAAAAGTCTTACTGTTGTGTCAAATATAGGAAACCAATTATTTTCTGGGCCCAACACTTAAATGATGCATTTTCTTCACAAGACATTAGAAAGCTGACAATAGTTTCTGACAGTTTAATTTCTCATATTAGATTTAGTGAGCATTAGCTTTTGTATATATTAAGGCTAATTGTGTTGGACTTCACCTCAGGTTTCAATGTTTGAGAAGTCAATTTCAAAAATGAACTTGAGTGATCTCATGAAGGCTACTAATAACTTCAGTAAAAGCAATGTTATTGGGACTGGAAGATCTGGAACTGTTTACAAAGCTGTCCTTGACGACGGCACATCACTCATGGTTAAGAGATTACTGGAATCTCAACACTCGGAGCAAGAATTTACAGCTGAGATGGCCACACTAGGAACAGTGCGACATCGTAACTTGGTTCCTCTTTTAGGTTTTTGCCTGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACTCTTCATGACAAACTACACCCTGATGCTGGCGAGTGCAATATGGAATGGTCTGTAAGGCTCAAAATCGCAATTGGAGCAGCCAAAGGATTCGCATGGCTTCATCACAATTGCAATCCTCGTATCATCCACCGAAACATAAGCTCAAAGTGCATTTTGTTGGATGTAGATTTCGAGCCCAAAATTTCTGATTTTGGCCTTGCAAGATTGATGAACCCAATCGATACCCATTTGAGTACTTTTGTAAATGGTGAGTTTGGCGATTTAGGTTATGTTGCTCCTGAGTATACAACAACTTTGGTGGCTACACCTAAAGGAGATGTTTATAGCTTTGGAACTGTGCTTCTTGAGTTGGTAACAGGTGAAAGACCTACACATATAGCGAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATTATGCAGCTCTCAGTCAACTCTAAATTAAAAGACGCCATTGATGAATCACTAGTTGGAAAAGGCGTTGATCATGAACTTTTTCAGTTTCTAAAGGTTGCATGTAACTGTGTTGCATCAACTCCAAAGGAGAGACCCACTATGTTTGAAGTATACCAGTTTCTAAGAGACATTGGGAGCAGATATAATTTCATAACTGAGGATGAGATAATGATACTTACAGATACTGGTGATGCTGGTAAGTTGGAAGAACTTATCGTAGCGCGAGAGGGACATAATTGA

Protein sequence

>MS.gene033532.t1

MVLSSRIFSTPIIVSFSLLVISCGITYGTETDILCLKRVKESLKDPNNYLQNWDFNNKTEGSICKFTGVECWHPDENRVLNLKLSNMGLKGEFPRGIQNCSSLTGLDFSLNSLSKTIPADVSTLIAFVTNLDLSSNDFTGEIPDSLANCTYLNNLKLDQNQLTGQIPPEFAGLNRLKTFSVSNNLLSGQVPNFRQGIVTADSFANNSGLCGAPLDSCKSKSSKTNTAVIAGAAVGGVTLAALGVGVGLLFFVRSVSHRKKEEDPEGNKWARILKGTKKIKVSMFEKSISKMNLSDLMKATNNFSKSNVIGTGRSGTVYKAVLDDGTSLMVKRLLESQHSEQEFTAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDKLHPDAGECNMEWSVRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDVDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHIAKAPETFKGNLVEWIMQLSVNSKLKDAIDESLVGKGVDHELFQFLKVACNCVASTPKERPTMFEVYQFLRDIGSRYNFITEDEIMILTDTGDAGKLEELIVAREGHN