Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034635.t1 | KEH41788.1 | 93.8 | 177 | 11 | 0 | 21 | 197 | 1 | 177 | 1.40E-87 | 332.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034635.t1 | Q8L4N1 | 27.6 | 181 | 105 | 5 | 22 | 192 | 44 | 208 | 1.1e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034635.t1 | A0A072VK27 | 93.8 | 177 | 11 | 0 | 21 | 197 | 1 | 177 | 1.0e-87 | 332.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034635 | MS.gene063633 | PPI |
| MS.gene034635 | MS.gene050004 | PPI |
| MS.gene017358 | MS.gene034635 | PPI |
| MS.gene034635 | MS.gene010109 | PPI |
| MS.gene26154 | MS.gene034635 | PPI |
| MS.gene009525 | MS.gene034635 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034635.t1 | MTR_1g054765 | 93.785 | 177 | 11 | 0 | 21 | 197 | 1 | 177 | 4.63e-125 | 350 |
| MS.gene034635.t1 | MTR_1g054750 | 79.695 | 197 | 33 | 5 | 1 | 197 | 1 | 190 | 1.69e-107 | 306 |
| MS.gene034635.t1 | MTR_1g083950 | 37.989 | 179 | 88 | 4 | 13 | 191 | 3 | 158 | 6.08e-33 | 116 |
| MS.gene034635.t1 | MTR_1g088640 | 38.251 | 183 | 95 | 4 | 13 | 194 | 2 | 167 | 1.74e-32 | 115 |
| MS.gene034635.t1 | MTR_1g088640 | 38.251 | 183 | 92 | 4 | 13 | 194 | 2 | 164 | 2.99e-32 | 114 |
| MS.gene034635.t1 | MTR_1g087200 | 36.158 | 177 | 90 | 5 | 17 | 190 | 2 | 158 | 1.80e-29 | 107 |
| MS.gene034635.t1 | MTR_5g065980 | 35.503 | 169 | 94 | 6 | 25 | 188 | 10 | 168 | 1.06e-27 | 103 |
| MS.gene034635.t1 | MTR_5g065980 | 35.673 | 171 | 93 | 7 | 25 | 188 | 10 | 170 | 1.93e-26 | 100 |
| MS.gene034635.t1 | MTR_7g108830 | 34.483 | 174 | 95 | 4 | 22 | 194 | 7 | 162 | 5.10e-22 | 88.2 |
| MS.gene034635.t1 | MTR_8g058620 | 34.483 | 174 | 95 | 4 | 22 | 194 | 7 | 162 | 5.10e-22 | 88.2 |
| MS.gene034635.t1 | MTR_4g064933 | 31.928 | 166 | 98 | 2 | 24 | 188 | 6 | 157 | 9.71e-19 | 79.7 |
| MS.gene034635.t1 | MTR_2g089350 | 30.601 | 183 | 94 | 6 | 24 | 194 | 26 | 187 | 9.58e-18 | 78.2 |
| MS.gene034635.t1 | MTR_1g088620 | 50.000 | 62 | 31 | 0 | 133 | 194 | 225 | 286 | 4.32e-16 | 74.7 |
| MS.gene034635.t1 | MTR_2g034200 | 29.714 | 175 | 102 | 4 | 24 | 194 | 6 | 163 | 6.43e-16 | 72.0 |
| MS.gene034635.t1 | MTR_5g077130 | 33.871 | 186 | 84 | 8 | 25 | 197 | 7 | 166 | 2.72e-15 | 70.5 |
| MS.gene034635.t1 | MTR_6g006190 | 31.034 | 87 | 60 | 0 | 102 | 188 | 52 | 138 | 6.47e-15 | 69.3 |
| MS.gene034635.t1 | MTR_6g006190 | 31.034 | 87 | 60 | 0 | 102 | 188 | 76 | 162 | 6.50e-15 | 69.7 |
| MS.gene034635.t1 | MTR_5g077130 | 34.409 | 186 | 84 | 8 | 25 | 197 | 7 | 167 | 8.50e-15 | 69.3 |
| MS.gene034635.t1 | MTR_4g019800 | 29.518 | 166 | 96 | 3 | 27 | 188 | 9 | 157 | 8.60e-15 | 69.3 |
| MS.gene034635.t1 | MTR_5g065980 | 30.872 | 149 | 88 | 6 | 25 | 168 | 10 | 148 | 2.18e-14 | 68.9 |
| MS.gene034635.t1 | MTR_7g065770 | 28.743 | 167 | 102 | 4 | 24 | 188 | 6 | 157 | 2.84e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034635.t1 | AT3G11930 | 56.395 | 172 | 69 | 3 | 24 | 195 | 34 | 199 | 7.58e-67 | 204 |
| MS.gene034635.t1 | AT3G11930 | 56.647 | 173 | 68 | 4 | 24 | 195 | 34 | 200 | 8.19e-66 | 201 |
| MS.gene034635.t1 | AT3G11930 | 56.322 | 174 | 68 | 4 | 24 | 195 | 34 | 201 | 1.23e-65 | 201 |
| MS.gene034635.t1 | AT3G11930 | 49.246 | 199 | 68 | 5 | 24 | 195 | 34 | 226 | 6.77e-60 | 187 |
| MS.gene034635.t1 | AT3G58450 | 51.786 | 168 | 74 | 3 | 25 | 192 | 32 | 192 | 6.16e-53 | 168 |
| MS.gene034635.t1 | AT3G58450 | 50.000 | 168 | 70 | 3 | 25 | 192 | 32 | 185 | 1.41e-50 | 162 |
| MS.gene034635.t1 | AT1G09740 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.70e-30 | 109 |
| MS.gene034635.t1 | AT1G09740 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.70e-30 | 109 |
| MS.gene034635.t1 | AT2G47710 | 33.918 | 171 | 94 | 4 | 22 | 191 | 7 | 159 | 1.85e-27 | 102 |
| MS.gene034635.t1 | AT3G62550 | 35.928 | 167 | 87 | 4 | 24 | 188 | 8 | 156 | 5.23e-27 | 100 |
| MS.gene034635.t1 | AT1G68300 | 33.143 | 175 | 97 | 3 | 15 | 188 | 2 | 157 | 3.26e-24 | 93.6 |
| MS.gene034635.t1 | AT3G01520 | 25.843 | 178 | 97 | 5 | 24 | 188 | 7 | 162 | 3.46e-15 | 70.5 |
| MS.gene034635.t1 | AT5G14680 | 30.612 | 98 | 67 | 1 | 91 | 188 | 66 | 162 | 1.61e-14 | 68.6 |
| MS.gene034635.t1 | AT3G17020 | 30.058 | 173 | 93 | 5 | 24 | 188 | 8 | 160 | 5.58e-14 | 67.0 |
| MS.gene034635.t1 | AT3G53990 | 28.655 | 171 | 97 | 4 | 27 | 191 | 9 | 160 | 7.56e-14 | 66.6 |
| MS.gene034635.t1 | AT3G03270 | 32.530 | 166 | 95 | 4 | 25 | 188 | 7 | 157 | 8.49e-14 | 66.6 |
| MS.gene034635.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.18e-13 | 65.9 |
| MS.gene034635.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.18e-13 | 65.9 |
| MS.gene034635.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.18e-13 | 65.9 |
| MS.gene034635.t1 | AT1G11360 | 27.222 | 180 | 103 | 6 | 22 | 192 | 37 | 197 | 5.18e-13 | 65.9 |
Find 55 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTATGGCTACTGTTACTA+TGG | 0.183037 | 1.3:-39786698 | MS.gene034635:CDS |
| TATGCATAAGTGTGGAAATT+TGG | 0.264690 | 1.3:+39786622 | None:intergenic |
| CCAGCTGGTCCCATAGGTAT+AGG | 0.340250 | 1.3:+39786598 | None:intergenic |
| TTCAAAGAATCCCCAACTTC+AGG | 0.340569 | 1.3:+39786217 | None:intergenic |
| ATCCATCAACACCTGAAGTT+GGG | 0.365371 | 1.3:-39786228 | MS.gene034635:CDS |
| AAAAGGGTGATGGAGGAAAT+AGG | 0.378001 | 1.3:-39786850 | None:intergenic |
| TGATAACCTCTTCAACGTTA+TGG | 0.381044 | 1.3:-39786713 | MS.gene034635:CDS |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1.3:-39785262 | MS.gene034635:CDS |
| CAGCTGGTCCCATAGGTATA+GGG | 0.428625 | 1.3:+39786599 | None:intergenic |
| ATCATGGGTAGTCGTGGCCT+TGG | 0.451807 | 1.3:-39785246 | MS.gene034635:CDS |
| TCCCCAACTTCAGGTGTTGA+TGG | 0.458443 | 1.3:+39786226 | None:intergenic |
| TATCCATCAACACCTGAAGT+TGG | 0.466557 | 1.3:-39786229 | MS.gene034635:CDS |
| CCTATGGGACCAGCTGGTAT+TGG | 0.470932 | 1.3:-39786592 | MS.gene034635:intron |
| TTATGCATACCCTATACCTA+TGG | 0.478213 | 1.3:-39786608 | MS.gene034635:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1.3:-39786176 | MS.gene034635:CDS |
| GCAGAAAGTGTGATTCTCAA+TGG | 0.496529 | 1.3:-39785324 | MS.gene034635:CDS |
| TGCAAGAGAAATGATTAGTC+AGG | 0.497260 | 1.3:-39785298 | MS.gene034635:CDS |
| GAAGCTTGTATGCTCTTAAG+TGG | 0.498753 | 1.3:-39786741 | MS.gene034635:CDS |
| ATGGCTACTGTTACTATGGA+TGG | 0.500858 | 1.3:-39786694 | MS.gene034635:CDS |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.501962 | 1.3:-39785233 | MS.gene034635:intron |
| TTTGGTGGCAGAGCCTTCCT+TGG | 0.503463 | 1.3:-39785105 | MS.gene034635:intron |
| GCAAATGTGCAAGGATAAGC+AGG | 0.503833 | 1.3:-39786149 | MS.gene034635:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1.3:+39785045 | None:intergenic |
| ATCTGAAAATGAGGAGGGAA+TGG | 0.505451 | 1.3:-39786665 | MS.gene034635:CDS |
| TGGAAGTGTTGATCAAGTGA+GGG | 0.512230 | 1.3:-39786827 | MS.gene034635:CDS |
| CCAATACCAGCTGGTCCCAT+AGG | 0.522576 | 1.3:+39786592 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1.3:-39786791 | MS.gene034635:CDS |
| TAACGTTGAAGAGGTTATCA+AGG | 0.523668 | 1.3:+39786716 | None:intergenic |
| TCCATCAACACCTGAAGTTG+GGG | 0.531250 | 1.3:-39786227 | MS.gene034635:CDS |
| CTCTTAATCATGGGTAGTCG+TGG | 0.541714 | 1.3:-39785252 | MS.gene034635:CDS |
| AATAGTCACTTACACTTCCA+AGG | 0.548894 | 1.3:+39785088 | None:intergenic |
| TGGAACAACATCTGAAAATG+AGG | 0.557443 | 1.3:-39786674 | MS.gene034635:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1.3:-39785261 | MS.gene034635:CDS |
| GTGGAAGTGTTGATCAAGTG+AGG | 0.562018 | 1.3:-39786828 | MS.gene034635:CDS |
| GTCACTTACACTTCCAAGGA+AGG | 0.566492 | 1.3:+39785092 | None:intergenic |
| CAGTAGCCATAACGTTGAAG+AGG | 0.566949 | 1.3:+39786707 | None:intergenic |
| CCTATACCTATGGGACCAGC+TGG | 0.573743 | 1.3:-39786598 | MS.gene034635:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1.3:-39786804 | MS.gene034635:CDS |
| TATGCATACCCTATACCTAT+GGG | 0.588273 | 1.3:-39786607 | MS.gene034635:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1.3:-39786177 | MS.gene034635:CDS |
| GTATAGGGTATGCATAAGTG+TGG | 0.596401 | 1.3:+39786614 | None:intergenic |
| ACGGGCTTTGCAAATGTGCA+AGG | 0.605600 | 1.3:-39786158 | MS.gene034635:CDS |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1.3:-39786782 | MS.gene034635:CDS |
| AACAACATCTGAAAATGAGG+AGG | 0.606982 | 1.3:-39786671 | MS.gene034635:CDS |
| ATATACTAACCAATACCAGC+TGG | 0.608648 | 1.3:+39786583 | None:intergenic |
| GGAAGTGTTGATCAAGTGAG+GGG | 0.617330 | 1.3:-39786826 | MS.gene034635:CDS |
| AACGTTGAAGAGGTTATCAA+GGG | 0.625008 | 1.3:+39786717 | None:intergenic |
| ACAACATCTGAAAATGAGGA+GGG | 0.642374 | 1.3:-39786670 | MS.gene034635:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1.3:-39786785 | MS.gene034635:CDS |
| AAGCTTGTATGCTCTTAAGT+GGG | 0.653871 | 1.3:-39786740 | MS.gene034635:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1.3:-39786763 | MS.gene034635:CDS |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1.3:+39786162 | None:intergenic |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1.3:-39785040 | MS.gene034635:CDS |
| AGGGTGATGGAGGAAATAGG+TGG | 0.693358 | 1.3:-39786847 | None:intergenic |
| AGTGTTGATCAAGTGAGGGG+AGG | 0.733239 | 1.3:-39786823 | MS.gene034635:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGACATTAATTAAT+AGG | + | chr1.3:39786067-39786086 | None:intergenic | 10.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1.3:39786050-39786069 | None:intergenic | 15.0% |
| !! | TAATAGGATAAATTAAATGA+AGG | + | chr1.3:39786051-39786070 | None:intergenic | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1.3:39786738-39786757 | MS.gene034635:CDS | 15.0% |
| !!! | TAAATTATGGCTTTTAAATT+TGG | - | chr1.3:39786447-39786466 | MS.gene034635:intron | 15.0% |
| !!! | TGTTTTTATTTTTAGTATAC+AGG | + | chr1.3:39786022-39786041 | None:intergenic | 15.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1.3:39785372-39785391 | MS.gene034635:intron | 20.0% |
| !! | AATTAGACATGGAAAAAAAA+AGG | + | chr1.3:39785338-39785357 | None:intergenic | 20.0% |
| !! | TTCATGATAAACAGAAAATA+GGG | - | chr1.3:39785932-39785951 | MS.gene034635:intron | 20.0% |
| !! | TTTCATGATAAACAGAAAAT+AGG | - | chr1.3:39785931-39785950 | MS.gene034635:intron | 20.0% |
| !!! | ATTTTGATTTCATTTATGCA+TGG | - | chr1.3:39786709-39786728 | MS.gene034635:CDS | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1.3:39786741-39786760 | MS.gene034635:CDS | 20.0% |
| !!! | GAAGATTTTTTTTTGAATGA+AGG | + | chr1.3:39785989-39786008 | None:intergenic | 20.0% |
| !!! | GTGATGATGTTTTAAAAATT+CGG | - | chr1.3:39786413-39786432 | MS.gene034635:intron | 20.0% |
| !!! | TTAATATTGTCCATTTTTCT+TGG | - | chr1.3:39785402-39785421 | MS.gene034635:intron | 20.0% |
| !!! | TTTAACTGTCACTTATATAA+GGG | + | chr1.3:39785825-39785844 | None:intergenic | 20.0% |
| ! | AATTATGAGAGAATTAGACA+TGG | + | chr1.3:39785349-39785368 | None:intergenic | 25.0% |
| ! | GTAATATTGCATATGTTAGA+CGG | - | chr1.3:39786311-39786330 | MS.gene034635:intron | 25.0% |
| ! | TCATGATAAACAGAAAATAG+GGG | - | chr1.3:39785933-39785952 | MS.gene034635:intron | 25.0% |
| ! | TGTGTAAGTTAATTTACGAT+CGG | - | chr1.3:39785524-39785543 | MS.gene034635:intron | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1.3:39786227-39786246 | None:intergenic | 25.0% |
| !! | AGGGAATGAACAATTTTAAA+AGG | + | chr1.3:39785806-39785825 | None:intergenic | 25.0% |
| !! | GTTTAACTGTCACTTATATA+AGG | + | chr1.3:39785826-39785845 | None:intergenic | 25.0% |
| !!! | GGGAATGAACAATTTTAAAA+GGG | + | chr1.3:39785805-39785824 | None:intergenic | 25.0% |
| AACTTACACAAGTGTATTCT+CGG | + | chr1.3:39785514-39785533 | None:intergenic | 30.0% | |
| ATGATGTAACTTTGTAAGGT+TGG | - | chr1.3:39785376-39785395 | MS.gene034635:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1.3:39786497-39786516 | None:intergenic | 30.0% | |
| CATGATAAACAGAAAATAGG+GGG | - | chr1.3:39785934-39785953 | MS.gene034635:intron | 30.0% | |
| GGTAGAAGCTACATAAATTA+TGG | - | chr1.3:39786434-39786453 | MS.gene034635:intron | 30.0% | |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1.3:39785242-39785261 | None:intergenic | 30.0% | |
| TCATTGATGCATACTTTCAT+TGG | + | chr1.3:39786503-39786522 | None:intergenic | 30.0% | |
| TTAGTATACAGGAAAGTGAA+AGG | + | chr1.3:39786011-39786030 | None:intergenic | 30.0% | |
| TTCCCATTCCTTTATATCAA+CGG | + | chr1.3:39785877-39785896 | None:intergenic | 30.0% | |
| TTTCATTTATGCATGGTTGA+TGG | - | chr1.3:39786716-39786735 | MS.gene034635:CDS | 30.0% | |
| TTTGAATGAAGGAAAGTGAA+AGG | + | chr1.3:39785978-39785997 | None:intergenic | 30.0% | |
| ! | CAAAGTATCACACAAGAAAA+AGG | + | chr1.3:39785595-39785614 | None:intergenic | 30.0% |
| !! | AAAGGAAGATGATTGCTTTT+TGG | + | chr1.3:39785960-39785979 | None:intergenic | 30.0% |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1.3:39786600-39786619 | MS.gene034635:CDS | 30.0% |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1.3:39785070-39785089 | MS.gene034635:CDS | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1.3:39785190-39785209 | MS.gene034635:intron | 35.0% | |
| AACGTTGAAGAGGTTATCAA+GGG | + | chr1.3:39785147-39785166 | None:intergenic | 35.0% | |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1.3:39785121-39785140 | MS.gene034635:intron | 35.0% | |
| AATAGTCACTTACACTTCCA+AGG | + | chr1.3:39786776-39786795 | None:intergenic | 35.0% | |
| ACAAACATTATTCTCTCCTC+AGG | - | chr1.3:39786133-39786152 | MS.gene034635:intron | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1.3:39785191-39785210 | MS.gene034635:intron | 35.0% | |
| AGGAAGTAAGCAAAGAAACT+TGG | + | chr1.3:39785318-39785337 | None:intergenic | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1.3:39785281-39785300 | None:intergenic | 35.0% | |
| ATGGATAAACAGCTGTTGAA+AGG | + | chr1.3:39785619-39785638 | None:intergenic | 35.0% | |
| CAGAAATGAGCAAAATCAGA+TGG | + | chr1.3:39785459-39785478 | None:intergenic | 35.0% | |
| CCTCAGGATAGTAAAATCAA+CGG | - | chr1.3:39786149-39786168 | MS.gene034635:intron | 35.0% | |
| GAGCAATTCTCCAAGAAAAA+TGG | + | chr1.3:39785415-39785434 | None:intergenic | 35.0% | |
| GGGAATGAGCAAAAATAGAT+GGG | - | chr1.3:39785556-39785575 | MS.gene034635:intron | 35.0% | |
| GTATGCATCAATGAAAATGC+AGG | - | chr1.3:39786509-39786528 | MS.gene034635:intron | 35.0% | |
| TAACGTTGAAGAGGTTATCA+AGG | + | chr1.3:39785148-39785167 | None:intergenic | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1.3:39785254-39785273 | MS.gene034635:CDS | 35.0% | |
| TGATAACCTCTTCAACGTTA+TGG | - | chr1.3:39785148-39785167 | MS.gene034635:intron | 35.0% | |
| TGCCGTTGATATAAAGGAAT+GGG | - | chr1.3:39785872-39785891 | MS.gene034635:intron | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1.3:39785187-39785206 | MS.gene034635:intron | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1.3:39785253-39785272 | MS.gene034635:CDS | 35.0% | |
| ! | CTTTCATTGGATTTGGCTTA+AGG | + | chr1.3:39786490-39786509 | None:intergenic | 35.0% |
| ! | TGCAAGAGAAATGATTAGTC+AGG | - | chr1.3:39786563-39786582 | MS.gene034635:intron | 35.0% |
| !! | ATTTACGATCGGCTATTTTG+CGG | - | chr1.3:39785535-39785554 | MS.gene034635:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1.3:39786599-39786618 | MS.gene034635:CDS | 35.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1.3:39785076-39785095 | MS.gene034635:CDS | 40.0% | |
| ATCCATCAACACCTGAAGTT+GGG | - | chr1.3:39785633-39785652 | MS.gene034635:intron | 40.0% | |
| ATCTGAAAATGAGGAGGGAA+TGG | - | chr1.3:39785196-39785215 | MS.gene034635:intron | 40.0% | |
| ATGGCTACTGTTACTATGGA+TGG | - | chr1.3:39785167-39785186 | MS.gene034635:intron | 40.0% | |
| CAGATGGAAGAAGAGCAATT+TGG | + | chr1.3:39785443-39785462 | None:intergenic | 40.0% | |
| CGGGAATGAGCAAAAATAGA+TGG | - | chr1.3:39785555-39785574 | MS.gene034635:intron | 40.0% | |
| CGTTATGGCTACTGTTACTA+TGG | - | chr1.3:39785163-39785182 | MS.gene034635:intron | 40.0% | |
| CTGCCGTTGATATAAAGGAA+TGG | - | chr1.3:39785871-39785890 | MS.gene034635:intron | 40.0% | |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1.3:39785120-39785139 | MS.gene034635:intron | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1.3:39785250-39785269 | None:intergenic | 40.0% | |
| TATCCATCAACACCTGAAGT+TGG | - | chr1.3:39785632-39785651 | MS.gene034635:intron | 40.0% | |
| TTCAAAGAATCCCCAACTTC+AGG | + | chr1.3:39785647-39785666 | None:intergenic | 40.0% | |
| TTCTCGGTATGAGTTAACTC+AGG | + | chr1.3:39785498-39785517 | None:intergenic | 40.0% | |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1.3:39785675-39785694 | None:intergenic | 40.0% |
| ! | GAGTACTGCCGTTGATATAA+AGG | - | chr1.3:39785866-39785885 | MS.gene034635:intron | 40.0% |
| ! | GCAGAAAGTGTGATTCTCAA+TGG | - | chr1.3:39786537-39786556 | MS.gene034635:intron | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1.3:39785676-39785695 | None:intergenic | 40.0% |
| !! | CAGTACTCGACATTTTTCAG+TGG | + | chr1.3:39785854-39785873 | None:intergenic | 40.0% |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1.3:39785034-39785053 | MS.gene034635:CDS | 40.0% |
| !! | TTTACGATCGGCTATTTTGC+GGG | - | chr1.3:39785536-39785555 | MS.gene034635:intron | 40.0% |
| !!! | CCGTTGATTTTACTATCCTG+AGG | + | chr1.3:39786152-39786171 | None:intergenic | 40.0% |
| !!! | CTTACCTTTTGAGTTTGCCA+AGG | + | chr1.3:39786635-39786654 | None:intergenic | 40.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1.3:39785684-39785703 | MS.gene034635:intron | 45.0% | |
| CAGTAGCCATAACGTTGAAG+AGG | + | chr1.3:39785157-39785176 | None:intergenic | 45.0% | |
| CTCTTAATCATGGGTAGTCG+TGG | - | chr1.3:39786609-39786628 | MS.gene034635:CDS | 45.0% | |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1.3:39785057-39785076 | MS.gene034635:CDS | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1.3:39785712-39785731 | MS.gene034635:intron | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1.3:39786819-39786838 | None:intergenic | 45.0% | |
| GTCACTTACACTTCCAAGGA+AGG | + | chr1.3:39786772-39786791 | None:intergenic | 45.0% | |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1.3:39785098-39785117 | MS.gene034635:intron | 45.0% | |
| TCCATCAACACCTGAAGTTG+GGG | - | chr1.3:39785634-39785653 | MS.gene034635:intron | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1.3:39785079-39785098 | MS.gene034635:CDS | 45.0% |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1.3:39786837-39786856 | None:intergenic | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1.3:39785035-39785054 | MS.gene034635:CDS | 45.0% |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1.3:39785033-39785052 | MS.gene034635:CDS | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1.3:39786840-39786859 | None:intergenic | 45.0% |
| !! | CATAAATATTAAATAAATTT+AGG | + | chr1.3:39786372-39786391 | None:intergenic | 5.0% |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1.3:39785703-39785722 | MS.gene034635:intron | 50.0% | |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1.3:39785685-39785704 | MS.gene034635:intron | 50.0% | |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1.3:39785265-39785284 | None:intergenic | 50.0% | |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1.3:39786821-39786840 | MS.gene034635:CDS | 50.0% | |
| TGTGCAAGGATAAGCAGGTG+CGG | - | chr1.3:39785717-39785736 | MS.gene034635:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1.3:39786628-39786647 | MS.gene034635:CDS | 50.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1.3:39785038-39785057 | MS.gene034635:CDS | 50.0% |
| !! | TCCCCAACTTCAGGTGTTGA+TGG | + | chr1.3:39785638-39785657 | None:intergenic | 50.0% |
| ATCATGGGTAGTCGTGGCCT+TGG | - | chr1.3:39786615-39786634 | MS.gene034635:CDS | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1.3:39785272-39785291 | None:intergenic | 55.0% | |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1.3:39785266-39785285 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1.3:39785263-39785282 | MS.gene034635:CDS | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1.3:39785269-39785288 | MS.gene034635:CDS | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1.3:39785702-39785721 | None:intergenic | 55.0% | |
| ! | TTTGGTGGCAGAGCCTTCCT+TGG | - | chr1.3:39786756-39786775 | MS.gene034635:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 39785020 | 39786863 | 39785020 | ID=MS.gene034635 |
| chr1.3 | mRNA | 39785020 | 39786863 | 39785020 | ID=MS.gene034635.t1;Parent=MS.gene034635 |
| chr1.3 | exon | 39786593 | 39786863 | 39786593 | ID=MS.gene034635.t1.exon1;Parent=MS.gene034635.t1 |
| chr1.3 | CDS | 39786593 | 39786863 | 39786593 | ID=cds.MS.gene034635.t1;Parent=MS.gene034635.t1 |
| chr1.3 | exon | 39786150 | 39786256 | 39786150 | ID=MS.gene034635.t1.exon2;Parent=MS.gene034635.t1 |
| chr1.3 | CDS | 39786150 | 39786256 | 39786150 | ID=cds.MS.gene034635.t1;Parent=MS.gene034635.t1 |
| chr1.3 | exon | 39785234 | 39785352 | 39785234 | ID=MS.gene034635.t1.exon3;Parent=MS.gene034635.t1 |
| chr1.3 | CDS | 39785234 | 39785352 | 39785234 | ID=cds.MS.gene034635.t1;Parent=MS.gene034635.t1 |
| chr1.3 | exon | 39785020 | 39785116 | 39785020 | ID=MS.gene034635.t1.exon4;Parent=MS.gene034635.t1 |
| chr1.3 | CDS | 39785020 | 39785116 | 39785020 | ID=cds.MS.gene034635.t1;Parent=MS.gene034635.t1 |
| Gene Sequence |
| Protein sequence |
