Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009525.t1 | XP_003616191.1 | 97 | 166 | 5 | 0 | 1 | 166 | 1 | 166 | 1.20E-84 | 322.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009525.t1 | Q8VYN9 | 31.2 | 160 | 95 | 3 | 7 | 157 | 50 | 203 | 1.8e-12 | 73.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009525.t1 | G7KFW2 | 97.0 | 166 | 5 | 0 | 1 | 166 | 1 | 166 | 8.9e-85 | 322.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048106 | MS.gene009525 | PPI |
| MS.gene034636 | MS.gene009525 | PPI |
| MS.gene009525 | MS.gene010109 | PPI |
| MS.gene20848 | MS.gene009525 | PPI |
| MS.gene009525 | MS.gene005525 | PPI |
| MS.gene07276 | MS.gene009525 | PPI |
| MS.gene92557 | MS.gene009525 | PPI |
| MS.gene009525 | MS.gene46499 | PPI |
| MS.gene20798 | MS.gene009525 | PPI |
| MS.gene009525 | MS.gene050004 | PPI |
| MS.gene009525 | MS.gene39214 | PPI |
| MS.gene009525 | MS.gene39213 | PPI |
| MS.gene73234 | MS.gene009525 | PPI |
| MS.gene009525 | MS.gene037687 | PPI |
| MS.gene009525 | MS.gene034635 | PPI |
| MS.gene39217 | MS.gene009525 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009525.t1 | MTR_5g077130 | 96.988 | 166 | 5 | 0 | 1 | 166 | 1 | 166 | 1.80e-118 | 332 |
| MS.gene009525.t1 | MTR_5g077130 | 96.407 | 167 | 5 | 1 | 1 | 166 | 1 | 167 | 7.21e-117 | 327 |
| MS.gene009525.t1 | MTR_4g019800 | 54.545 | 165 | 75 | 0 | 1 | 165 | 1 | 165 | 6.60e-60 | 183 |
| MS.gene009525.t1 | MTR_4g064933 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 1.36e-58 | 180 |
| MS.gene009525.t1 | MTR_7g065770 | 49.045 | 157 | 80 | 0 | 1 | 157 | 1 | 157 | 6.98e-54 | 168 |
| MS.gene009525.t1 | MTR_2g034200 | 50.318 | 157 | 78 | 0 | 1 | 157 | 1 | 157 | 7.63e-51 | 160 |
| MS.gene009525.t1 | MTR_1g087200 | 35.849 | 159 | 86 | 6 | 9 | 161 | 10 | 158 | 4.21e-20 | 82.0 |
| MS.gene009525.t1 | MTR_5g065980 | 35.758 | 165 | 90 | 4 | 6 | 158 | 9 | 169 | 2.41e-19 | 80.5 |
| MS.gene009525.t1 | MTR_5g065980 | 37.349 | 166 | 88 | 5 | 6 | 158 | 9 | 171 | 1.09e-18 | 79.0 |
| MS.gene009525.t1 | MTR_1g083950 | 35.714 | 154 | 83 | 6 | 9 | 157 | 13 | 155 | 1.35e-18 | 78.2 |
| MS.gene009525.t1 | MTR_1g054750 | 27.128 | 188 | 88 | 5 | 7 | 166 | 24 | 190 | 1.06e-16 | 73.9 |
| MS.gene009525.t1 | MTR_1g054765 | 27.513 | 189 | 92 | 4 | 7 | 166 | 5 | 177 | 8.53e-16 | 71.2 |
| MS.gene009525.t1 | MTR_6g006190 | 29.932 | 147 | 92 | 3 | 14 | 157 | 24 | 162 | 2.09e-14 | 67.4 |
| MS.gene009525.t1 | MTR_2g089350 | 30.435 | 161 | 96 | 4 | 7 | 157 | 27 | 181 | 1.07e-13 | 66.6 |
| MS.gene009525.t1 | MTR_1g088640 | 28.571 | 154 | 94 | 5 | 9 | 157 | 16 | 158 | 4.18e-13 | 63.9 |
| MS.gene009525.t1 | MTR_1g088640 | 28.387 | 155 | 96 | 5 | 9 | 157 | 16 | 161 | 3.35e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009525.t1 | AT3G03270 | 70.701 | 157 | 46 | 0 | 1 | 157 | 1 | 157 | 4.07e-79 | 232 |
| MS.gene009525.t1 | AT3G03270 | 68.657 | 134 | 42 | 0 | 1 | 134 | 1 | 134 | 3.82e-63 | 193 |
| MS.gene009525.t1 | AT3G53990 | 50.318 | 157 | 78 | 0 | 1 | 157 | 1 | 157 | 5.22e-54 | 168 |
| MS.gene009525.t1 | AT3G17020 | 46.711 | 152 | 80 | 1 | 7 | 157 | 9 | 160 | 6.79e-49 | 155 |
| MS.gene009525.t1 | AT3G53990 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 3.70e-24 | 91.7 |
| MS.gene009525.t1 | AT1G09740 | 37.736 | 159 | 87 | 4 | 7 | 157 | 10 | 164 | 3.18e-19 | 80.1 |
| MS.gene009525.t1 | AT1G09740 | 37.736 | 159 | 87 | 4 | 7 | 157 | 10 | 164 | 3.18e-19 | 80.1 |
| MS.gene009525.t1 | AT3G62550 | 34.356 | 163 | 88 | 5 | 3 | 157 | 5 | 156 | 6.39e-18 | 76.6 |
| MS.gene009525.t1 | AT3G58450 | 32.317 | 164 | 84 | 6 | 7 | 157 | 32 | 181 | 1.81e-17 | 76.3 |
| MS.gene009525.t1 | AT3G17020 | 37.079 | 89 | 55 | 1 | 7 | 94 | 9 | 97 | 7.49e-17 | 72.4 |
| MS.gene009525.t1 | AT3G58450 | 32.544 | 169 | 84 | 6 | 7 | 157 | 32 | 188 | 1.47e-16 | 73.9 |
| MS.gene009525.t1 | AT1G11360 | 29.870 | 154 | 105 | 1 | 7 | 157 | 40 | 193 | 3.35e-16 | 73.6 |
| MS.gene009525.t1 | AT1G11360 | 29.870 | 154 | 105 | 1 | 7 | 157 | 40 | 193 | 3.35e-16 | 73.6 |
| MS.gene009525.t1 | AT1G11360 | 29.870 | 154 | 105 | 1 | 7 | 157 | 40 | 193 | 3.35e-16 | 73.6 |
| MS.gene009525.t1 | AT1G11360 | 29.870 | 154 | 105 | 1 | 7 | 157 | 40 | 193 | 3.35e-16 | 73.6 |
| MS.gene009525.t1 | AT1G68300 | 31.818 | 154 | 94 | 4 | 7 | 157 | 12 | 157 | 1.85e-15 | 70.1 |
| MS.gene009525.t1 | AT3G01520 | 29.252 | 147 | 93 | 3 | 14 | 157 | 24 | 162 | 1.99e-15 | 70.1 |
| MS.gene009525.t1 | AT5G14680 | 28.571 | 147 | 94 | 3 | 14 | 157 | 24 | 162 | 9.95e-15 | 68.6 |
| MS.gene009525.t1 | AT3G11930 | 29.560 | 159 | 101 | 2 | 9 | 157 | 37 | 194 | 1.09e-14 | 68.9 |
| MS.gene009525.t1 | AT3G11930 | 29.560 | 159 | 99 | 3 | 9 | 157 | 37 | 192 | 2.09e-14 | 68.2 |
| MS.gene009525.t1 | AT3G11930 | 29.560 | 159 | 100 | 3 | 9 | 157 | 37 | 193 | 4.82e-14 | 67.0 |
| MS.gene009525.t1 | AT5G54430 | 29.932 | 147 | 88 | 3 | 7 | 144 | 50 | 190 | 6.29e-11 | 59.3 |
| MS.gene009525.t1 | AT5G54430 | 29.932 | 147 | 88 | 3 | 7 | 144 | 50 | 190 | 6.29e-11 | 59.3 |
| MS.gene009525.t1 | AT5G54430 | 29.932 | 147 | 88 | 3 | 7 | 144 | 50 | 190 | 6.96e-11 | 59.3 |
| MS.gene009525.t1 | AT5G54430 | 29.932 | 147 | 88 | 3 | 7 | 144 | 50 | 190 | 6.96e-11 | 59.3 |
| MS.gene009525.t1 | AT5G54430 | 29.932 | 147 | 88 | 3 | 7 | 144 | 50 | 190 | 7.08e-11 | 59.3 |
| MS.gene009525.t1 | AT5G54430 | 29.932 | 147 | 88 | 3 | 7 | 144 | 50 | 190 | 7.08e-11 | 59.3 |
Find 44 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGCCTCTAGAGGAATTA+AGG | 0.233780 | 5.3:-62681337 | MS.gene009525:CDS |
| CATCTGGACTCATTGGTTAT+TGG | 0.247760 | 5.3:-62680870 | MS.gene009525:CDS |
| GGTAGTGGCAAAGGTGTATT+GGG | 0.310523 | 5.3:-62680934 | MS.gene009525:CDS |
| CTTCATTTCAGTGTGTTGTT+AGG | 0.317283 | 5.3:-62680719 | MS.gene009525:intron |
| GTTATTGGAAGCAGGGGTTT+AGG | 0.321337 | 5.3:-62680855 | MS.gene009525:CDS |
| CCATCTAAGTGCTAATTTAC+TGG | 0.336238 | 5.3:+62681939 | None:intergenic |
| CCAGTAAATTAGCACTTAGA+TGG | 0.339331 | 5.3:-62681939 | MS.gene009525:CDS |
| GGGGTTTAGGTTCCATTAAA+AGG | 0.346706 | 5.3:-62680842 | MS.gene009525:intron |
| TCAAGAATATCTATGACTTC+AGG | 0.358570 | 5.3:+62681275 | None:intergenic |
| AGATCTTCATCTGGACTCAT+TGG | 0.398485 | 5.3:-62680877 | MS.gene009525:CDS |
| AAACAACATAAATACCCCTT+TGG | 0.402357 | 5.3:+62681238 | None:intergenic |
| ATAAACTTTACAAAGCAATA+TGG | 0.410129 | 5.3:-62681311 | MS.gene009525:CDS |
| ATTCCCTTGACTACAGTAAC+CGG | 0.414500 | 5.3:+62680659 | None:intergenic |
| TGGTAGTGGCAAAGGTGTAT+TGG | 0.429624 | 5.3:-62680935 | MS.gene009525:CDS |
| GCATTGCACAATTTCTCCCT+TGG | 0.434268 | 5.3:+62680906 | None:intergenic |
| GGTGCCTCTAGAGGAATTAA+GGG | 0.447240 | 5.3:-62681336 | MS.gene009525:CDS |
| TGCTGTGCAAGATCTTCATC+TGG | 0.451178 | 5.3:-62680886 | MS.gene009525:CDS |
| CTCATTGGTTATTGGAAGCA+GGG | 0.470129 | 5.3:-62680862 | MS.gene009525:CDS |
| ACTCATTGGTTATTGGAAGC+AGG | 0.470238 | 5.3:-62680863 | MS.gene009525:CDS |
| CTTGAACCAGGCAATGGTAG+TGG | 0.472382 | 5.3:-62680949 | MS.gene009525:intron |
| ATGGCAAAAGCACACATAGT+TGG | 0.510567 | 5.3:-62681985 | MS.gene009525:CDS |
| CTTTCTAGTGTGATCAGCTG+AGG | 0.523922 | 5.3:+62681858 | None:intergenic |
| CTCAGCTGATCACACTAGAA+AGG | 0.525726 | 5.3:-62681857 | MS.gene009525:CDS |
| ATCAGATCAATGCCTAGACT+TGG | 0.531334 | 5.3:+62680628 | None:intergenic |
| TGCAGCTTTGGTGCCTCTAG+AGG | 0.535834 | 5.3:-62681345 | MS.gene009525:intron |
| CCAGGCAATGGTAGTGGCAA+AGG | 0.540554 | 5.3:-62680943 | MS.gene009525:intron |
| ATCTCCCTTAATTCCTCTAG+AGG | 0.547571 | 5.3:+62681332 | None:intergenic |
| TTGCCCGGTTACTGTAGTCA+AGG | 0.560158 | 5.3:-62680663 | MS.gene009525:CDS |
| AGGTGTATTGGGGAGATCCA+AGG | 0.560692 | 5.3:-62680923 | MS.gene009525:CDS |
| ACACATAGTTGGAGTAGCTA+TGG | 0.571440 | 5.3:-62681974 | MS.gene009525:CDS |
| GAATGCAACCTTCCAAGTCT+AGG | 0.571630 | 5.3:-62680640 | MS.gene009525:CDS |
| AAAGCAATATGGAATTGCTA+AGG | 0.573242 | 5.3:-62681300 | MS.gene009525:CDS |
| TGCCCGGTTACTGTAGTCAA+GGG | 0.580340 | 5.3:-62680662 | MS.gene009525:CDS |
| CTAAGTGCTAATTTACTGGT+AGG | 0.583052 | 5.3:+62681943 | None:intergenic |
| TTTCTAGTGTGATCAGCTGA+GGG | 0.583250 | 5.3:+62681859 | None:intergenic |
| GGTGACAAATGCTTCTTGCC+CGG | 0.585729 | 5.3:-62680678 | MS.gene009525:CDS |
| CAGTAAATTAGCACTTAGAT+GGG | 0.588277 | 5.3:-62681938 | MS.gene009525:CDS |
| GGTGTATTGGGGAGATCCAA+GGG | 0.593103 | 5.3:-62680922 | MS.gene009525:CDS |
| GATCAATGCCTAGACTTGGA+AGG | 0.599164 | 5.3:+62680632 | None:intergenic |
| CTAGTGTGATCAGCTGAGGG+AGG | 0.611787 | 5.3:+62681862 | None:intergenic |
| TCATTGGTTATTGGAAGCAG+GGG | 0.616498 | 5.3:-62680861 | MS.gene009525:CDS |
| TTCCCTTGACTACAGTAACC+GGG | 0.638321 | 5.3:+62680660 | None:intergenic |
| GTAGTGGCAAAGGTGTATTG+GGG | 0.678633 | 5.3:-62680933 | MS.gene009525:CDS |
| AGGCAGTGTTAGCAAGCATG+TGG | 0.730937 | 5.3:-62680699 | MS.gene009525:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTCATGTTATTAT+CGG | + | chr5.3:62681507-62681526 | None:intergenic | 15.0% |
| !! | ATAAACTTTACAAAGCAATA+TGG | - | chr5.3:62681308-62681327 | MS.gene009525:CDS | 20.0% |
| !! | TATGATAATTCAAAGAATTG+CGG | - | chr5.3:62680888-62680907 | MS.gene009525:CDS | 20.0% |
| !!! | TAAACTATAGTACCTTTTAA+TGG | + | chr5.3:62681792-62681811 | None:intergenic | 20.0% |
| ! | TAAAAGAAAGAGAATGAAAG+AGG | + | chr5.3:62680819-62680838 | None:intergenic | 25.0% |
| ! | TATGTTGTATAGGTTTATCT+TGG | - | chr5.3:62681192-62681211 | MS.gene009525:intron | 25.0% |
| ! | TTAATAACTACAGAAAACCA+CGG | + | chr5.3:62681007-62681026 | None:intergenic | 25.0% |
| !! | ACTGATGTTATTTAAAAGCT+TGG | + | chr5.3:62680853-62680872 | None:intergenic | 25.0% |
| !!! | GATTTTTTATGTCTCAACAA+CGG | + | chr5.3:62681108-62681127 | None:intergenic | 25.0% |
| !!! | TGACAATTTTGTGTTTTGTT+TGG | - | chr5.3:62681242-62681261 | MS.gene009525:intron | 25.0% |
| !!! | TTTTTTATGTGTGTCTTTGT+TGG | - | chr5.3:62681644-62681663 | MS.gene009525:intron | 25.0% |
| AAACAACATAAATACCCCTT+TGG | + | chr5.3:62681384-62681403 | None:intergenic | 30.0% | |
| AAAGCAATATGGAATTGCTA+AGG | - | chr5.3:62681319-62681338 | MS.gene009525:CDS | 30.0% | |
| CAGTAAATTAGCACTTAGAT+GGG | - | chr5.3:62680681-62680700 | MS.gene009525:CDS | 30.0% | |
| GCACATACTATATGTTGTAT+AGG | - | chr5.3:62681182-62681201 | MS.gene009525:intron | 30.0% | |
| TCAAGAATATCTATGACTTC+AGG | + | chr5.3:62681347-62681366 | None:intergenic | 30.0% | |
| TGCTGAAACAATCTCATTTA+TGG | - | chr5.3:62681076-62681095 | MS.gene009525:intron | 30.0% | |
| TGGTGTAGTTAACACATATA+TGG | - | chr5.3:62681617-62681636 | MS.gene009525:intron | 30.0% | |
| ! | AAGATTTTAAATAGCAGTCG+TGG | + | chr5.3:62681056-62681075 | None:intergenic | 30.0% |
| AAAAATCCCTGAATGCAATC+TGG | + | chr5.3:62681144-62681163 | None:intergenic | 35.0% | |
| AAAATCCCTGAATGCAATCT+GGG | + | chr5.3:62681143-62681162 | None:intergenic | 35.0% | |
| AAACTGCCTCAAAAACCAAA+GGG | - | chr5.3:62681366-62681385 | MS.gene009525:intron | 35.0% | |
| AAATCGACTATAATTGACCG+TGG | - | chr5.3:62680987-62681006 | MS.gene009525:intron | 35.0% | |
| AAATTTATACGACTGTGGTC+TGG | - | chr5.3:62680913-62680932 | MS.gene009525:CDS | 35.0% | |
| CATATAGTATGTGCTAAGCA+AGG | + | chr5.3:62681176-62681195 | None:intergenic | 35.0% | |
| CCAGTAAATTAGCACTTAGA+TGG | - | chr5.3:62680680-62680699 | MS.gene009525:CDS | 35.0% | |
| CCATCTAAGTGCTAATTTAC+TGG | + | chr5.3:62680683-62680702 | None:intergenic | 35.0% | |
| CGGTTAAATTTATACGACTG+TGG | - | chr5.3:62680908-62680927 | MS.gene009525:CDS | 35.0% | |
| CTAAGTGCTAATTTACTGGT+AGG | + | chr5.3:62680679-62680698 | None:intergenic | 35.0% | |
| ! | CTTCATTTCAGTGTGTTGTT+AGG | - | chr5.3:62681900-62681919 | MS.gene009525:CDS | 35.0% |
| !! | AGTCGATTTTGCCTCAATTA+TGG | + | chr5.3:62680976-62680995 | None:intergenic | 35.0% |
| !!! | AAATACCCCTTTGGTTTTTG+AGG | + | chr5.3:62681375-62681394 | None:intergenic | 35.0% |
| AACTGCCTCAAAAACCAAAG+GGG | - | chr5.3:62681367-62681386 | MS.gene009525:intron | 40.0% | |
| ACACATAGTTGGAGTAGCTA+TGG | - | chr5.3:62680645-62680664 | MS.gene009525:CDS | 40.0% | |
| AGATCTTCATCTGGACTCAT+TGG | - | chr5.3:62681742-62681761 | MS.gene009525:intron | 40.0% | |
| ATCTCCCTTAATTCCTCTAG+AGG | + | chr5.3:62681290-62681309 | None:intergenic | 40.0% | |
| ATTCCCTTGACTACAGTAAC+CGG | + | chr5.3:62681963-62681982 | None:intergenic | 40.0% | |
| CGATGCTTCATAGGAATGTA+TGG | - | chr5.3:62681597-62681616 | MS.gene009525:intron | 40.0% | |
| CTTGTATCTGTGTCAGATAG+TGG | - | chr5.3:62681552-62681571 | MS.gene009525:intron | 40.0% | |
| GAAACTGCCTCAAAAACCAA+AGG | - | chr5.3:62681365-62681384 | MS.gene009525:intron | 40.0% | |
| TCTGATGTCTAAATCTGCGT+CGG | + | chr5.3:62681471-62681490 | None:intergenic | 40.0% | |
| TGTCTCTACGACCATAATTG+AGG | - | chr5.3:62680962-62680981 | MS.gene009525:intron | 40.0% | |
| ! | ACTCATTGGTTATTGGAAGC+AGG | - | chr5.3:62681756-62681775 | MS.gene009525:intron | 40.0% |
| ! | ATGGCAAAAGCACACATAGT+TGG | - | chr5.3:62680634-62680653 | MS.gene009525:CDS | 40.0% |
| ! | CATCTGGACTCATTGGTTAT+TGG | - | chr5.3:62681749-62681768 | MS.gene009525:intron | 40.0% |
| ! | CTCATTGGTTATTGGAAGCA+GGG | - | chr5.3:62681757-62681776 | MS.gene009525:intron | 40.0% |
| ! | GGGGTTTAGGTTCCATTAAA+AGG | - | chr5.3:62681777-62681796 | MS.gene009525:intron | 40.0% |
| ! | TCATTGGTTATTGGAAGCAG+GGG | - | chr5.3:62681758-62681777 | MS.gene009525:intron | 40.0% |
| ! | TTTCTAGTGTGATCAGCTGA+GGG | + | chr5.3:62680763-62680782 | None:intergenic | 40.0% |
| !! | AAGGAGCTTTTTGAAGACAC+TGG | - | chr5.3:62680781-62680800 | MS.gene009525:intron | 40.0% |
| !! | CTTTGTTGGTTTCTTGAACC+AGG | - | chr5.3:62681658-62681677 | MS.gene009525:intron | 40.0% |
| !! | TGGTTGATGATTTGCAGCTT+TGG | - | chr5.3:62681262-62681281 | MS.gene009525:CDS | 40.0% |
| !! | TTGAAGTGTCGATGCTTCAT+AGG | - | chr5.3:62681588-62681607 | MS.gene009525:intron | 40.0% |
| CTCAGCTGATCACACTAGAA+AGG | - | chr5.3:62680762-62680781 | MS.gene009525:intron | 45.0% | |
| GAATGCAACCTTCCAAGTCT+AGG | - | chr5.3:62681979-62681998 | MS.gene009525:CDS | 45.0% | |
| GCATTGCACAATTTCTCCCT+TGG | + | chr5.3:62681716-62681735 | None:intergenic | 45.0% | |
| GTTATTGGAAGCAGGGGTTT+AGG | - | chr5.3:62681764-62681783 | MS.gene009525:intron | 45.0% | |
| TGCTGTGCAAGATCTTCATC+TGG | - | chr5.3:62681733-62681752 | MS.gene009525:intron | 45.0% | |
| TGGTTTCTTGAACCAGGCAA+TGG | - | chr5.3:62681664-62681683 | MS.gene009525:intron | 45.0% | |
| TTCCCTTGACTACAGTAACC+GGG | + | chr5.3:62681962-62681981 | None:intergenic | 45.0% | |
| ! | CTTTCTAGTGTGATCAGCTG+AGG | + | chr5.3:62680764-62680783 | None:intergenic | 45.0% |
| ! | GGTAGTGGCAAAGGTGTATT+GGG | - | chr5.3:62681685-62681704 | MS.gene009525:intron | 45.0% |
| ! | GGTGCCTCTAGAGGAATTAA+GGG | - | chr5.3:62681283-62681302 | MS.gene009525:CDS | 45.0% |
| ! | GTAGTGGCAAAGGTGTATTG+GGG | - | chr5.3:62681686-62681705 | MS.gene009525:intron | 45.0% |
| ! | TGGTGCCTCTAGAGGAATTA+AGG | - | chr5.3:62681282-62681301 | MS.gene009525:CDS | 45.0% |
| !! | TGGTAGTGGCAAAGGTGTAT+TGG | - | chr5.3:62681684-62681703 | MS.gene009525:intron | 45.0% |
| AGGCAGTGTTAGCAAGCATG+TGG | - | chr5.3:62681920-62681939 | MS.gene009525:CDS | 50.0% | |
| AGGTGTATTGGGGAGATCCA+AGG | - | chr5.3:62681696-62681715 | MS.gene009525:intron | 50.0% | |
| CTTGAACCAGGCAATGGTAG+TGG | - | chr5.3:62681670-62681689 | MS.gene009525:intron | 50.0% | |
| GGTGACAAATGCTTCTTGCC+CGG | - | chr5.3:62681941-62681960 | MS.gene009525:CDS | 50.0% | |
| GGTGTATTGGGGAGATCCAA+GGG | - | chr5.3:62681697-62681716 | MS.gene009525:intron | 50.0% | |
| TATACGACTGTGGTCTGGAC+CGG | - | chr5.3:62680918-62680937 | MS.gene009525:CDS | 50.0% | |
| TCGTAGAGACATCGAAACCC+TGG | + | chr5.3:62680953-62680972 | None:intergenic | 50.0% | |
| TGCCCGGTTACTGTAGTCAA+GGG | - | chr5.3:62681957-62681976 | MS.gene009525:CDS | 50.0% | |
| TTGCCCGGTTACTGTAGTCA+AGG | - | chr5.3:62681956-62681975 | MS.gene009525:CDS | 50.0% | |
| ! | ACATCGAAACCCTGGTGTTG+CGG | + | chr5.3:62680945-62680964 | None:intergenic | 50.0% |
| ATACGACTGTGGTCTGGACC+GGG | - | chr5.3:62680919-62680938 | MS.gene009525:CDS | 55.0% | |
| CCTTTGCCACTACCATTGCC+TGG | + | chr5.3:62681679-62681698 | None:intergenic | 55.0% | |
| CGCAGCCCAGATTGCATTCA+GGG | - | chr5.3:62681135-62681154 | MS.gene009525:intron | 55.0% | |
| CTAGTGTGATCAGCTGAGGG+AGG | + | chr5.3:62680760-62680779 | None:intergenic | 55.0% | |
| TCGCAGCCCAGATTGCATTC+AGG | - | chr5.3:62681134-62681153 | MS.gene009525:intron | 55.0% | |
| !! | CCAGGCAATGGTAGTGGCAA+AGG | - | chr5.3:62681676-62681695 | MS.gene009525:intron | 55.0% |
| !! | TGCAGCTTTGGTGCCTCTAG+AGG | - | chr5.3:62681274-62681293 | MS.gene009525:CDS | 55.0% |
| !! | GAAACCCTGGTGTTGCGGCC+CGG | + | chr5.3:62680940-62680959 | None:intergenic | 65.0% |
| TGGACCGGGCCGCAACACCA+GGG | - | chr5.3:62680933-62680952 | MS.gene009525:CDS | 70.0% | |
| CTGGACCGGGCCGCAACACC+AGG | - | chr5.3:62680932-62680951 | MS.gene009525:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 62680634 | 62682007 | 62680634 | ID=MS.gene009525 |
| chr5.3 | mRNA | 62680634 | 62682007 | 62680634 | ID=MS.gene009525.t1;Parent=MS.gene009525 |
| chr5.3 | exon | 62681833 | 62682007 | 62681833 | ID=MS.gene009525.t1.exon1;Parent=MS.gene009525.t1 |
| chr5.3 | CDS | 62681833 | 62682007 | 62681833 | ID=cds.MS.gene009525.t1;Parent=MS.gene009525.t1 |
| chr5.3 | exon | 62681253 | 62681362 | 62681253 | ID=MS.gene009525.t1.exon2;Parent=MS.gene009525.t1 |
| chr5.3 | CDS | 62681253 | 62681362 | 62681253 | ID=cds.MS.gene009525.t1;Parent=MS.gene009525.t1 |
| chr5.3 | exon | 62680843 | 62680961 | 62680843 | ID=MS.gene009525.t1.exon3;Parent=MS.gene009525.t1 |
| chr5.3 | CDS | 62680843 | 62680961 | 62680843 | ID=cds.MS.gene009525.t1;Parent=MS.gene009525.t1 |
| chr5.3 | exon | 62680634 | 62680730 | 62680634 | ID=MS.gene009525.t1.exon4;Parent=MS.gene009525.t1 |
| chr5.3 | CDS | 62680634 | 62680730 | 62680634 | ID=cds.MS.gene009525.t1;Parent=MS.gene009525.t1 |
| Gene Sequence |
| Protein sequence |
