Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26154.t1 | XP_003616191.1 | 95.8 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 4.70E-84 | 320.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26154.t1 | Q8VYN9 | 30.0 | 160 | 97 | 3 | 7 | 157 | 50 | 203 | 7.0e-12 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26154.t1 | G7KFW2 | 95.8 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 3.4e-84 | 320.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26154 | MS.gene010109 | PPI |
| MS.gene39217 | MS.gene26154 | PPI |
| MS.gene26154 | MS.gene005525 | PPI |
| MS.gene048106 | MS.gene26154 | PPI |
| MS.gene26154 | MS.gene92557 | PPI |
| MS.gene26154 | MS.gene20798 | PPI |
| MS.gene26154 | MS.gene034636 | PPI |
| MS.gene26154 | MS.gene46499 | PPI |
| MS.gene26154 | MS.gene050004 | PPI |
| MS.gene26154 | MS.gene39214 | PPI |
| MS.gene26154 | MS.gene39213 | PPI |
| MS.gene26154 | MS.gene20848 | PPI |
| MS.gene26154 | MS.gene73234 | PPI |
| MS.gene07276 | MS.gene26154 | PPI |
| MS.gene26154 | MS.gene037687 | PPI |
| MS.gene26154 | MS.gene034635 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26154.t1 | MTR_5g077130 | 95.783 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 1.06e-117 | 330 |
| MS.gene26154.t1 | MTR_5g077130 | 95.210 | 167 | 7 | 1 | 1 | 166 | 1 | 167 | 7.47e-116 | 325 |
| MS.gene26154.t1 | MTR_4g019800 | 53.939 | 165 | 76 | 0 | 1 | 165 | 1 | 165 | 2.15e-59 | 182 |
| MS.gene26154.t1 | MTR_4g064933 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 3.06e-58 | 179 |
| MS.gene26154.t1 | MTR_7g065770 | 49.045 | 157 | 80 | 0 | 1 | 157 | 1 | 157 | 1.64e-53 | 167 |
| MS.gene26154.t1 | MTR_2g034200 | 50.318 | 157 | 78 | 0 | 1 | 157 | 1 | 157 | 2.20e-51 | 162 |
| MS.gene26154.t1 | MTR_1g087200 | 36.478 | 159 | 85 | 6 | 9 | 161 | 10 | 158 | 1.89e-20 | 82.8 |
| MS.gene26154.t1 | MTR_5g065980 | 35.152 | 165 | 91 | 4 | 6 | 158 | 9 | 169 | 7.21e-19 | 79.3 |
| MS.gene26154.t1 | MTR_1g083950 | 35.714 | 154 | 83 | 6 | 9 | 157 | 13 | 155 | 1.19e-18 | 78.6 |
| MS.gene26154.t1 | MTR_5g065980 | 36.747 | 166 | 89 | 5 | 6 | 158 | 9 | 171 | 3.29e-18 | 77.8 |
| MS.gene26154.t1 | MTR_1g054750 | 26.596 | 188 | 89 | 5 | 7 | 166 | 24 | 190 | 2.68e-16 | 72.8 |
| MS.gene26154.t1 | MTR_1g054765 | 26.984 | 189 | 93 | 4 | 7 | 166 | 5 | 177 | 2.00e-15 | 70.1 |
| MS.gene26154.t1 | MTR_6g006190 | 29.932 | 147 | 92 | 3 | 14 | 157 | 24 | 162 | 6.24e-15 | 68.9 |
| MS.gene26154.t1 | MTR_1g088640 | 29.221 | 154 | 93 | 5 | 9 | 157 | 16 | 158 | 4.44e-14 | 66.2 |
| MS.gene26154.t1 | MTR_1g088640 | 29.032 | 155 | 95 | 5 | 9 | 157 | 16 | 161 | 3.17e-13 | 64.3 |
| MS.gene26154.t1 | MTR_2g089350 | 29.193 | 161 | 98 | 4 | 7 | 157 | 27 | 181 | 6.18e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26154.t1 | AT3G03270 | 69.620 | 158 | 48 | 0 | 1 | 158 | 1 | 158 | 3.16e-78 | 229 |
| MS.gene26154.t1 | AT3G03270 | 67.910 | 134 | 43 | 0 | 1 | 134 | 1 | 134 | 2.50e-62 | 191 |
| MS.gene26154.t1 | AT3G53990 | 50.318 | 157 | 78 | 0 | 1 | 157 | 1 | 157 | 1.38e-53 | 167 |
| MS.gene26154.t1 | AT3G17020 | 46.405 | 153 | 81 | 1 | 7 | 158 | 9 | 161 | 1.70e-48 | 154 |
| MS.gene26154.t1 | AT3G53990 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 1.21e-23 | 90.1 |
| MS.gene26154.t1 | AT1G09740 | 37.107 | 159 | 88 | 4 | 7 | 157 | 10 | 164 | 9.92e-19 | 79.0 |
| MS.gene26154.t1 | AT1G09740 | 37.107 | 159 | 88 | 4 | 7 | 157 | 10 | 164 | 9.92e-19 | 79.0 |
| MS.gene26154.t1 | AT3G62550 | 34.356 | 163 | 88 | 5 | 3 | 157 | 5 | 156 | 3.48e-18 | 77.0 |
| MS.gene26154.t1 | AT3G58450 | 31.098 | 164 | 86 | 6 | 7 | 157 | 32 | 181 | 1.20e-16 | 73.9 |
| MS.gene26154.t1 | AT3G17020 | 37.079 | 89 | 55 | 1 | 7 | 94 | 9 | 97 | 1.74e-16 | 71.6 |
| MS.gene26154.t1 | AT1G68300 | 32.468 | 154 | 93 | 4 | 7 | 157 | 12 | 157 | 2.01e-16 | 72.4 |
| MS.gene26154.t1 | AT3G01520 | 29.932 | 147 | 92 | 3 | 14 | 157 | 24 | 162 | 2.64e-16 | 72.4 |
| MS.gene26154.t1 | AT3G58450 | 31.361 | 169 | 86 | 6 | 7 | 157 | 32 | 188 | 9.86e-16 | 71.6 |
| MS.gene26154.t1 | AT5G14680 | 29.252 | 147 | 93 | 3 | 14 | 157 | 24 | 162 | 1.32e-15 | 70.9 |
| MS.gene26154.t1 | AT1G11360 | 28.571 | 154 | 107 | 1 | 7 | 157 | 40 | 193 | 1.59e-15 | 71.6 |
| MS.gene26154.t1 | AT1G11360 | 28.571 | 154 | 107 | 1 | 7 | 157 | 40 | 193 | 1.59e-15 | 71.6 |
| MS.gene26154.t1 | AT1G11360 | 28.571 | 154 | 107 | 1 | 7 | 157 | 40 | 193 | 1.59e-15 | 71.6 |
| MS.gene26154.t1 | AT1G11360 | 28.571 | 154 | 107 | 1 | 7 | 157 | 40 | 193 | 1.59e-15 | 71.6 |
| MS.gene26154.t1 | AT3G11930 | 30.189 | 159 | 100 | 2 | 9 | 157 | 37 | 194 | 4.34e-15 | 70.1 |
| MS.gene26154.t1 | AT3G11930 | 30.189 | 159 | 98 | 3 | 9 | 157 | 37 | 192 | 9.36e-15 | 68.9 |
| MS.gene26154.t1 | AT3G11930 | 30.189 | 159 | 99 | 3 | 9 | 157 | 37 | 193 | 1.99e-14 | 68.2 |
| MS.gene26154.t1 | AT2G47710 | 28.571 | 154 | 96 | 4 | 9 | 157 | 12 | 156 | 3.37e-11 | 58.9 |
Find 44 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGCCTCTAGAGGAATTA+AGG | 0.233780 | 5.4:+57286512 | MS.gene26154:CDS |
| CATCTGGACTCATTGGTTAT+TGG | 0.247760 | 5.4:+57286978 | MS.gene26154:CDS |
| GGTAGTGGCAAAGGTGTATT+GGG | 0.310523 | 5.4:+57286914 | MS.gene26154:CDS |
| CTTCATTTCAGTGTGTTGTT+AGG | 0.317283 | 5.4:+57287129 | MS.gene26154:intron |
| GTTATTGGAAGCAGGGGTTT+AGG | 0.321337 | 5.4:+57286993 | MS.gene26154:CDS |
| GGGGTTTAGGTTCCATTAAA+AGG | 0.346706 | 5.4:+57287006 | MS.gene26154:CDS |
| TCAAGAATATCTATGACTTC+AGG | 0.358570 | 5.4:-57286574 | None:intergenic |
| CCAGCAAATTAGCACTTAGA+TGG | 0.389656 | 5.4:+57285910 | MS.gene26154:CDS |
| CCATCTAAGTGCTAATTTGC+TGG | 0.396841 | 5.4:-57285910 | None:intergenic |
| AGATCTTCATCTGGACTCAT+TGG | 0.398485 | 5.4:+57286971 | MS.gene26154:CDS |
| AAACAACATAAATACCCCTT+TGG | 0.402357 | 5.4:-57286611 | None:intergenic |
| ATAAACTTTACAAAGCAATA+TGG | 0.410129 | 5.4:+57286538 | MS.gene26154:CDS |
| ATTCCCTTGACTACAGTAAC+CGG | 0.414500 | 5.4:-57287189 | None:intergenic |
| TGGTAGTGGCAAAGGTGTAT+TGG | 0.429624 | 5.4:+57286913 | MS.gene26154:CDS |
| TGTGATCAGCTGAGGGAGGC+TGG | 0.432159 | 5.4:-57285983 | None:intergenic |
| GCATTGCACAATTTCTCCCT+TGG | 0.434268 | 5.4:-57286942 | None:intergenic |
| GGTGCCTCTAGAGGAATTAA+GGG | 0.447240 | 5.4:+57286513 | MS.gene26154:CDS |
| TGCTGTGCAAGATCTTCATC+TGG | 0.451178 | 5.4:+57286962 | MS.gene26154:CDS |
| CTCATTGGTTATTGGAAGCA+GGG | 0.470129 | 5.4:+57286986 | MS.gene26154:CDS |
| ACTCATTGGTTATTGGAAGC+AGG | 0.470238 | 5.4:+57286985 | MS.gene26154:CDS |
| CTTGAACCAGGCAATGGTAG+TGG | 0.472382 | 5.4:+57286899 | MS.gene26154:intron |
| ATGGCAAAAGCACACATAGT+TGG | 0.510567 | 5.4:+57285864 | MS.gene26154:CDS |
| ATCAAATCAATGCCTAGACT+TGG | 0.522276 | 5.4:-57287220 | None:intergenic |
| CTTTCTAGTGTGATCAGCTG+AGG | 0.523922 | 5.4:-57285991 | None:intergenic |
| CTCAGCTGATCACACTAGAA+AGG | 0.525726 | 5.4:+57285992 | MS.gene26154:CDS |
| TGCAGCTTTGGTGCCTCTAG+AGG | 0.535834 | 5.4:+57286504 | MS.gene26154:intron |
| CCAGGCAATGGTAGTGGCAA+AGG | 0.540554 | 5.4:+57286905 | MS.gene26154:intron |
| ATCTCCCTTAATTCCTCTAG+AGG | 0.547571 | 5.4:-57286517 | None:intergenic |
| TTGCCCGGTTACTGTAGTCA+AGG | 0.560158 | 5.4:+57287185 | MS.gene26154:CDS |
| AGGTGTATTGGGGAGATCCA+AGG | 0.560692 | 5.4:+57286925 | MS.gene26154:CDS |
| ACACATAGTTGGAGTAGCTA+TGG | 0.571440 | 5.4:+57285875 | MS.gene26154:CDS |
| GAATGCAACCTTCCAAGTCT+AGG | 0.571630 | 5.4:+57287208 | MS.gene26154:CDS |
| AAAGCAATATGGAATTGCTA+AGG | 0.573242 | 5.4:+57286549 | MS.gene26154:CDS |
| TGCCCGGTTACTGTAGTCAA+GGG | 0.580340 | 5.4:+57287186 | MS.gene26154:CDS |
| TTTCTAGTGTGATCAGCTGA+GGG | 0.583250 | 5.4:-57285990 | None:intergenic |
| GGTGACAAATGCTTCTTGCC+CGG | 0.585729 | 5.4:+57287170 | MS.gene26154:CDS |
| AATCAATGCCTAGACTTGGA+AGG | 0.590106 | 5.4:-57287216 | None:intergenic |
| GGTGTATTGGGGAGATCCAA+GGG | 0.593103 | 5.4:+57286926 | MS.gene26154:CDS |
| CTAAGTGCTAATTTGCTGGT+AGG | 0.598950 | 5.4:-57285906 | None:intergenic |
| CTAGTGTGATCAGCTGAGGG+AGG | 0.611787 | 5.4:-57285987 | None:intergenic |
| TCATTGGTTATTGGAAGCAG+GGG | 0.616498 | 5.4:+57286987 | MS.gene26154:CDS |
| TTCCCTTGACTACAGTAACC+GGG | 0.638321 | 5.4:-57287188 | None:intergenic |
| GTAGTGGCAAAGGTGTATTG+GGG | 0.678633 | 5.4:+57286915 | MS.gene26154:CDS |
| AGGCAGTGTTAGCAAGCATG+TGG | 0.730937 | 5.4:+57287149 | MS.gene26154:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTCATGTTATTAT+CGG | - | chr5.4:57286736-57286755 | None:intergenic | 15.0% |
| !! | ATAAACTTTACAAAGCAATA+TGG | + | chr5.4:57286538-57286557 | MS.gene26154:CDS | 20.0% |
| !!! | TAAACTATAGTACCTTTTAA+TGG | - | chr5.4:57287021-57287040 | None:intergenic | 20.0% |
| ! | TAAAAGAAAGAGAATGAAAG+AGG | - | chr5.4:57286049-57286068 | None:intergenic | 25.0% |
| ! | TATGTTGTATAGGTTTATCT+TGG | + | chr5.4:57286422-57286441 | MS.gene26154:intron | 25.0% |
| !! | AAGATTTTAAATAGCAGAAG+TGG | - | chr5.4:57286286-57286305 | None:intergenic | 25.0% |
| !! | ACTGATGTTATTTAAAAGCT+TGG | - | chr5.4:57286083-57286102 | None:intergenic | 25.0% |
| !!! | TGACAATTTTGTGTTTTGTT+TGG | + | chr5.4:57286472-57286491 | MS.gene26154:intron | 25.0% |
| !!! | TTTTTTATGTGTGTCTTTGT+TGG | + | chr5.4:57286873-57286892 | MS.gene26154:intron | 25.0% |
| AAAAATCCATGAATGCAATC+TGG | - | chr5.4:57286374-57286393 | None:intergenic | 30.0% | |
| AAAATCCATGAATGCAATCT+GGG | - | chr5.4:57286373-57286392 | None:intergenic | 30.0% | |
| AAACAACATAAATACCCCTT+TGG | - | chr5.4:57286614-57286633 | None:intergenic | 30.0% | |
| AAAGCAATATGGAATTGCTA+AGG | + | chr5.4:57286549-57286568 | MS.gene26154:CDS | 30.0% | |
| CTGTTAAATTTATACGACTG+TGG | + | chr5.4:57286138-57286157 | MS.gene26154:intron | 30.0% | |
| GCACATACTATATGTTGTAT+AGG | + | chr5.4:57286412-57286431 | MS.gene26154:intron | 30.0% | |
| TCAAGAATATCTATGACTTC+AGG | - | chr5.4:57286577-57286596 | None:intergenic | 30.0% | |
| TGCTGAAACAATCTCATTTA+TGG | + | chr5.4:57286306-57286325 | MS.gene26154:intron | 30.0% | |
| TGGTGTAGTTAACACATATA+TGG | + | chr5.4:57286846-57286865 | MS.gene26154:intron | 30.0% | |
| TTCATAACTACAGAAAACCA+CGG | - | chr5.4:57286237-57286256 | None:intergenic | 30.0% | |
| ! | GATTTTTGATGTCTCAACAA+CGG | - | chr5.4:57286338-57286357 | None:intergenic | 30.0% |
| AAACTGCCTCAAAAACCAAA+GGG | + | chr5.4:57286596-57286615 | MS.gene26154:CDS | 35.0% | |
| AAATTTATACGACTGTGGTC+TGG | + | chr5.4:57286143-57286162 | MS.gene26154:intron | 35.0% | |
| CATATAGTATGTGCTAAGCA+AGG | - | chr5.4:57286406-57286425 | None:intergenic | 35.0% | |
| ! | CTTCATTTCAGTGTGTTGTT+AGG | + | chr5.4:57287129-57287148 | MS.gene26154:intron | 35.0% |
| !! | AGTCGATTTTGCCTCAATTA+TGG | - | chr5.4:57286206-57286225 | None:intergenic | 35.0% |
| !!! | AAATACCCCTTTGGTTTTTG+AGG | - | chr5.4:57286605-57286624 | None:intergenic | 35.0% |
| AAATCGACTATAAGTGACCG+TGG | + | chr5.4:57286217-57286236 | MS.gene26154:intron | 40.0% | |
| AACTGCCTCAAAAACCAAAG+GGG | + | chr5.4:57286597-57286616 | MS.gene26154:CDS | 40.0% | |
| ACACATAGTTGGAGTAGCTA+TGG | + | chr5.4:57285875-57285894 | MS.gene26154:CDS | 40.0% | |
| AGATCTTCATCTGGACTCAT+TGG | + | chr5.4:57286971-57286990 | MS.gene26154:CDS | 40.0% | |
| ATCTCCCTTAATTCCTCTAG+AGG | - | chr5.4:57286520-57286539 | None:intergenic | 40.0% | |
| ATTCCCTTGACTACAGTAAC+CGG | - | chr5.4:57287192-57287211 | None:intergenic | 40.0% | |
| CCAGCAAATTAGCACTTAGA+TGG | + | chr5.4:57285910-57285929 | MS.gene26154:CDS | 40.0% | |
| CGATGCTTCATAGGAATGTA+TGG | + | chr5.4:57286826-57286845 | MS.gene26154:intron | 40.0% | |
| GAAACTGCCTCAAAAACCAA+AGG | + | chr5.4:57286595-57286614 | MS.gene26154:CDS | 40.0% | |
| TCTGATGTCTAAATCTGCGT+CGG | - | chr5.4:57286700-57286719 | None:intergenic | 40.0% | |
| TGTCTCTACGACCATAATTG+AGG | + | chr5.4:57286192-57286211 | MS.gene26154:intron | 40.0% | |
| ! | ACTCATTGGTTATTGGAAGC+AGG | + | chr5.4:57286985-57287004 | MS.gene26154:CDS | 40.0% |
| ! | ATGGCAAAAGCACACATAGT+TGG | + | chr5.4:57285864-57285883 | MS.gene26154:CDS | 40.0% |
| ! | CATCTGGACTCATTGGTTAT+TGG | + | chr5.4:57286978-57286997 | MS.gene26154:CDS | 40.0% |
| ! | CCATCTAAGTGCTAATTTGC+TGG | - | chr5.4:57285913-57285932 | None:intergenic | 40.0% |
| ! | CTCATTGGTTATTGGAAGCA+GGG | + | chr5.4:57286986-57287005 | MS.gene26154:CDS | 40.0% |
| ! | GGGGTTTAGGTTCCATTAAA+AGG | + | chr5.4:57287006-57287025 | MS.gene26154:CDS | 40.0% |
| ! | TCATTGGTTATTGGAAGCAG+GGG | + | chr5.4:57286987-57287006 | MS.gene26154:CDS | 40.0% |
| ! | TTTCTAGTGTGATCAGCTGA+GGG | - | chr5.4:57285993-57286012 | None:intergenic | 40.0% |
| !! | AAGGAGCTTTTTGAAGACAC+TGG | + | chr5.4:57286011-57286030 | MS.gene26154:CDS | 40.0% |
| !! | CTAAGTGCTAATTTGCTGGT+AGG | - | chr5.4:57285909-57285928 | None:intergenic | 40.0% |
| !! | CTTTGTTGGTTTCTTGAACC+AGG | + | chr5.4:57286887-57286906 | MS.gene26154:intron | 40.0% |
| !! | TGGTTGATGATTTGCAGCTT+TGG | + | chr5.4:57286492-57286511 | MS.gene26154:intron | 40.0% |
| !! | TTGAAGTGTCGATGCTTCAT+AGG | + | chr5.4:57286817-57286836 | MS.gene26154:intron | 40.0% |
| ACATCGAAACCCTGATGTTG+CGG | - | chr5.4:57286175-57286194 | None:intergenic | 45.0% | |
| CTCAGCTGATCACACTAGAA+AGG | + | chr5.4:57285992-57286011 | MS.gene26154:CDS | 45.0% | |
| GAATGCAACCTTCCAAGTCT+AGG | + | chr5.4:57287208-57287227 | MS.gene26154:CDS | 45.0% | |
| GCATTGCACAATTTCTCCCT+TGG | - | chr5.4:57286945-57286964 | None:intergenic | 45.0% | |
| GTTATTGGAAGCAGGGGTTT+AGG | + | chr5.4:57286993-57287012 | MS.gene26154:CDS | 45.0% | |
| TGCTGTGCAAGATCTTCATC+TGG | + | chr5.4:57286962-57286981 | MS.gene26154:CDS | 45.0% | |
| TGGTTTCTTGAACCAGGCAA+TGG | + | chr5.4:57286893-57286912 | MS.gene26154:intron | 45.0% | |
| TTCCCTTGACTACAGTAACC+GGG | - | chr5.4:57287191-57287210 | None:intergenic | 45.0% | |
| ! | CTTTCTAGTGTGATCAGCTG+AGG | - | chr5.4:57285994-57286013 | None:intergenic | 45.0% |
| ! | GGTAGTGGCAAAGGTGTATT+GGG | + | chr5.4:57286914-57286933 | MS.gene26154:CDS | 45.0% |
| ! | GGTGCCTCTAGAGGAATTAA+GGG | + | chr5.4:57286513-57286532 | MS.gene26154:CDS | 45.0% |
| ! | GTAGTGGCAAAGGTGTATTG+GGG | + | chr5.4:57286915-57286934 | MS.gene26154:CDS | 45.0% |
| ! | TGGTGCCTCTAGAGGAATTA+AGG | + | chr5.4:57286512-57286531 | MS.gene26154:CDS | 45.0% |
| !! | TGGTAGTGGCAAAGGTGTAT+TGG | + | chr5.4:57286913-57286932 | MS.gene26154:CDS | 45.0% |
| AGGCAGTGTTAGCAAGCATG+TGG | + | chr5.4:57287149-57287168 | MS.gene26154:CDS | 50.0% | |
| AGGTGTATTGGGGAGATCCA+AGG | + | chr5.4:57286925-57286944 | MS.gene26154:CDS | 50.0% | |
| CTTGAACCAGGCAATGGTAG+TGG | + | chr5.4:57286899-57286918 | MS.gene26154:intron | 50.0% | |
| GGTGACAAATGCTTCTTGCC+CGG | + | chr5.4:57287170-57287189 | MS.gene26154:CDS | 50.0% | |
| GGTGTATTGGGGAGATCCAA+GGG | + | chr5.4:57286926-57286945 | MS.gene26154:CDS | 50.0% | |
| TATACGACTGTGGTCTGGAC+CGG | + | chr5.4:57286148-57286167 | MS.gene26154:intron | 50.0% | |
| TGCCCGGTTACTGTAGTCAA+GGG | + | chr5.4:57287186-57287205 | MS.gene26154:CDS | 50.0% | |
| TTGCCCGGTTACTGTAGTCA+AGG | + | chr5.4:57287185-57287204 | MS.gene26154:CDS | 50.0% | |
| ATACGACTGTGGTCTGGACC+GGG | + | chr5.4:57286149-57286168 | MS.gene26154:intron | 55.0% | |
| CCTTTGCCACTACCATTGCC+TGG | - | chr5.4:57286908-57286927 | None:intergenic | 55.0% | |
| CGCAGCCCAGATTGCATTCA+TGG | + | chr5.4:57286365-57286384 | MS.gene26154:intron | 55.0% | |
| CTAGTGTGATCAGCTGAGGG+AGG | - | chr5.4:57285990-57286009 | None:intergenic | 55.0% | |
| !! | CCAGGCAATGGTAGTGGCAA+AGG | + | chr5.4:57286905-57286924 | MS.gene26154:intron | 55.0% |
| !! | TGCAGCTTTGGTGCCTCTAG+AGG | + | chr5.4:57286504-57286523 | MS.gene26154:intron | 55.0% |
| GAAACCCTGATGTTGCGGCC+CGG | - | chr5.4:57286170-57286189 | None:intergenic | 60.0% | |
| TGTGATCAGCTGAGGGAGGC+TGG | - | chr5.4:57285986-57286005 | None:intergenic | 60.0% | |
| TGGACCGGGCCGCAACATCA+GGG | + | chr5.4:57286163-57286182 | MS.gene26154:intron | 65.0% | |
| CTGGACCGGGCCGCAACATC+AGG | + | chr5.4:57286162-57286181 | MS.gene26154:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 57285864 | 57287236 | 57285864 | ID=MS.gene26154 |
| chr5.4 | mRNA | 57285864 | 57287236 | 57285864 | ID=MS.gene26154.t1;Parent=MS.gene26154 |
| chr5.4 | exon | 57285864 | 57286038 | 57285864 | ID=MS.gene26154.t1.exon1;Parent=MS.gene26154.t1 |
| chr5.4 | CDS | 57285864 | 57286038 | 57285864 | ID=cds.MS.gene26154.t1;Parent=MS.gene26154.t1 |
| chr5.4 | exon | 57286509 | 57286618 | 57286509 | ID=MS.gene26154.t1.exon2;Parent=MS.gene26154.t1 |
| chr5.4 | CDS | 57286509 | 57286618 | 57286509 | ID=cds.MS.gene26154.t1;Parent=MS.gene26154.t1 |
| chr5.4 | exon | 57286909 | 57287027 | 57286909 | ID=MS.gene26154.t1.exon3;Parent=MS.gene26154.t1 |
| chr5.4 | CDS | 57286909 | 57287027 | 57286909 | ID=cds.MS.gene26154.t1;Parent=MS.gene26154.t1 |
| chr5.4 | exon | 57287140 | 57287236 | 57287140 | ID=MS.gene26154.t1.exon4;Parent=MS.gene26154.t1 |
| chr5.4 | CDS | 57287140 | 57287236 | 57287140 | ID=cds.MS.gene26154.t1;Parent=MS.gene26154.t1 |
| Gene Sequence |
| Protein sequence |
