Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017358.t1 | XP_003616191.1 | 95.8 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 5.20E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017358.t1 | Q8VYN9 | 30.6 | 160 | 96 | 3 | 7 | 157 | 50 | 203 | 7.0e-12 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017358.t1 | G7KFW2 | 95.8 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 3.7e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017358 | MS.gene39214 | PPI |
| MS.gene017358 | MS.gene39213 | PPI |
| MS.gene73234 | MS.gene017358 | PPI |
| MS.gene017358 | MS.gene034635 | PPI |
| MS.gene39217 | MS.gene017358 | PPI |
| MS.gene048106 | MS.gene017358 | PPI |
| MS.gene017358 | MS.gene010109 | PPI |
| MS.gene017358 | MS.gene46499 | PPI |
| MS.gene034636 | MS.gene017358 | PPI |
| MS.gene017358 | MS.gene005525 | PPI |
| MS.gene20848 | MS.gene017358 | PPI |
| MS.gene07276 | MS.gene017358 | PPI |
| MS.gene017358 | MS.gene037687 | PPI |
| MS.gene017358 | MS.gene92557 | PPI |
| MS.gene017358 | MS.gene20798 | PPI |
| MS.gene017358 | MS.gene050004 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017358.t1 | MTR_5g077130 | 95.783 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 1.09e-116 | 327 |
| MS.gene017358.t1 | MTR_5g077130 | 95.210 | 167 | 7 | 1 | 1 | 166 | 1 | 167 | 5.33e-115 | 323 |
| MS.gene017358.t1 | MTR_4g019800 | 54.545 | 165 | 75 | 0 | 1 | 165 | 1 | 165 | 4.45e-60 | 184 |
| MS.gene017358.t1 | MTR_4g064933 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 6.49e-59 | 181 |
| MS.gene017358.t1 | MTR_7g065770 | 49.045 | 157 | 80 | 0 | 1 | 157 | 1 | 157 | 4.32e-54 | 169 |
| MS.gene017358.t1 | MTR_2g034200 | 51.592 | 157 | 76 | 0 | 1 | 157 | 1 | 157 | 1.89e-52 | 164 |
| MS.gene017358.t1 | MTR_1g087200 | 35.152 | 165 | 91 | 6 | 3 | 161 | 4 | 158 | 8.93e-21 | 83.6 |
| MS.gene017358.t1 | MTR_1g083950 | 35.220 | 159 | 87 | 6 | 4 | 157 | 8 | 155 | 6.21e-19 | 79.3 |
| MS.gene017358.t1 | MTR_5g065980 | 35.152 | 165 | 91 | 4 | 6 | 158 | 9 | 169 | 9.20e-19 | 79.0 |
| MS.gene017358.t1 | MTR_5g065980 | 36.747 | 166 | 89 | 5 | 6 | 158 | 9 | 171 | 3.89e-18 | 77.4 |
| MS.gene017358.t1 | MTR_1g054750 | 26.596 | 188 | 89 | 5 | 7 | 166 | 24 | 190 | 2.91e-16 | 72.8 |
| MS.gene017358.t1 | MTR_1g054765 | 26.984 | 189 | 93 | 4 | 7 | 166 | 5 | 177 | 2.22e-15 | 70.1 |
| MS.gene017358.t1 | MTR_6g006190 | 30.612 | 147 | 91 | 3 | 14 | 157 | 24 | 162 | 4.37e-15 | 69.3 |
| MS.gene017358.t1 | MTR_1g088640 | 29.221 | 154 | 93 | 5 | 9 | 157 | 16 | 158 | 5.30e-14 | 66.2 |
| MS.gene017358.t1 | MTR_2g089350 | 30.061 | 163 | 98 | 4 | 5 | 157 | 25 | 181 | 1.39e-13 | 66.2 |
| MS.gene017358.t1 | MTR_1g088640 | 29.032 | 155 | 95 | 5 | 9 | 157 | 16 | 161 | 4.86e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017358.t1 | AT3G03270 | 70.253 | 158 | 47 | 0 | 1 | 158 | 1 | 158 | 2.66e-79 | 232 |
| MS.gene017358.t1 | AT3G03270 | 68.657 | 134 | 42 | 0 | 1 | 134 | 1 | 134 | 1.94e-63 | 194 |
| MS.gene017358.t1 | AT3G53990 | 50.318 | 157 | 78 | 0 | 1 | 157 | 1 | 157 | 2.86e-54 | 169 |
| MS.gene017358.t1 | AT3G17020 | 45.513 | 156 | 84 | 1 | 4 | 158 | 6 | 161 | 9.21e-49 | 155 |
| MS.gene017358.t1 | AT3G53990 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 2.40e-24 | 92.0 |
| MS.gene017358.t1 | AT3G62550 | 34.969 | 163 | 87 | 5 | 3 | 157 | 5 | 156 | 8.73e-19 | 78.6 |
| MS.gene017358.t1 | AT1G09740 | 37.107 | 159 | 88 | 4 | 7 | 157 | 10 | 164 | 1.13e-18 | 78.6 |
| MS.gene017358.t1 | AT1G09740 | 37.107 | 159 | 88 | 4 | 7 | 157 | 10 | 164 | 1.13e-18 | 78.6 |
| MS.gene017358.t1 | AT3G58450 | 31.707 | 164 | 85 | 6 | 7 | 157 | 32 | 181 | 7.42e-17 | 74.7 |
| MS.gene017358.t1 | AT3G17020 | 35.870 | 92 | 58 | 1 | 4 | 94 | 6 | 97 | 8.79e-17 | 72.4 |
| MS.gene017358.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene017358.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene017358.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene017358.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene017358.t1 | AT1G68300 | 32.468 | 154 | 93 | 4 | 7 | 157 | 12 | 157 | 3.10e-16 | 72.0 |
| MS.gene017358.t1 | AT3G01520 | 29.932 | 147 | 92 | 3 | 14 | 157 | 24 | 162 | 3.62e-16 | 72.4 |
| MS.gene017358.t1 | AT3G58450 | 31.953 | 169 | 85 | 6 | 7 | 157 | 32 | 188 | 6.42e-16 | 72.0 |
| MS.gene017358.t1 | AT5G14680 | 29.252 | 147 | 93 | 3 | 14 | 157 | 24 | 162 | 1.68e-15 | 70.5 |
| MS.gene017358.t1 | AT3G11930 | 29.560 | 159 | 101 | 2 | 9 | 157 | 37 | 194 | 6.38e-15 | 69.3 |
| MS.gene017358.t1 | AT3G11930 | 29.560 | 159 | 99 | 3 | 9 | 157 | 37 | 192 | 1.39e-14 | 68.6 |
| MS.gene017358.t1 | AT3G11930 | 29.560 | 159 | 100 | 3 | 9 | 157 | 37 | 193 | 2.93e-14 | 67.8 |
| MS.gene017358.t1 | AT2G47710 | 28.571 | 154 | 96 | 4 | 9 | 157 | 12 | 156 | 4.41e-11 | 58.5 |
| MS.gene017358.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.49e-11 | 58.9 |
| MS.gene017358.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.49e-11 | 58.9 |
| MS.gene017358.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.58e-11 | 58.9 |
| MS.gene017358.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.58e-11 | 58.9 |
| MS.gene017358.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 9.18e-11 | 58.9 |
| MS.gene017358.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 9.18e-11 | 58.9 |
Find 43 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGCCTCTAGAGGAATTA+AGG | 0.233780 | 5.1:-60135572 | MS.gene017358:CDS |
| CATCTGGACTCATTGGTTAT+TGG | 0.247760 | 5.1:-60135117 | MS.gene017358:CDS |
| GGTAGTGGCAAAGGTGTATT+GGG | 0.310523 | 5.1:-60135181 | MS.gene017358:CDS |
| CTTCATTTCAGTGTGTTGTT+AGG | 0.317283 | 5.1:-60134966 | MS.gene017358:intron |
| GTTATTGGAAGCAGGGGTTT+AGG | 0.321337 | 5.1:-60135102 | MS.gene017358:CDS |
| GGGGTTTAGGTTCCATTAAA+AGG | 0.346706 | 5.1:-60135089 | MS.gene017358:intron |
| TCAAGAATATCTATGACTTC+AGG | 0.358570 | 5.1:+60135510 | None:intergenic |
| CCAGCAAATTAGCACTTAGA+TGG | 0.389656 | 5.1:-60136149 | MS.gene017358:CDS |
| CCATCTAAGTGCTAATTTGC+TGG | 0.396841 | 5.1:+60136149 | None:intergenic |
| AGATCTTCATCTGGACTCAT+TGG | 0.398485 | 5.1:-60135124 | MS.gene017358:CDS |
| AAACAACATAAATACCCCTT+TGG | 0.402357 | 5.1:+60135473 | None:intergenic |
| ATAAACTTTACAAAGCAATA+TGG | 0.410129 | 5.1:-60135546 | MS.gene017358:CDS |
| ATTCCCTTGACTACAGTAAC+CGG | 0.414500 | 5.1:+60134906 | None:intergenic |
| TGGTAGTGGCAAAGGTGTAT+TGG | 0.429624 | 5.1:-60135182 | MS.gene017358:CDS |
| GCATTGCACAATTTCTCCCT+TGG | 0.434268 | 5.1:+60135153 | None:intergenic |
| GGTGCCTCTAGAGGAATTAA+GGG | 0.447240 | 5.1:-60135571 | MS.gene017358:CDS |
| TGCTGTGCAAGATCTTCATC+TGG | 0.451178 | 5.1:-60135133 | MS.gene017358:CDS |
| CTCATTGGTTATTGGAAGCA+GGG | 0.470129 | 5.1:-60135109 | MS.gene017358:CDS |
| ACTCATTGGTTATTGGAAGC+AGG | 0.470238 | 5.1:-60135110 | MS.gene017358:CDS |
| ATGGCAAAAGCACGCATAGT+TGG | 0.471789 | 5.1:-60136195 | MS.gene017358:CDS |
| CTTGAACCAGGCAATGGTAG+TGG | 0.472382 | 5.1:-60135196 | MS.gene017358:intron |
| CTCAGCTGATCATACTAGAA+AGG | 0.517520 | 5.1:-60136067 | MS.gene017358:CDS |
| ATCAAATCAATGCCTAGACT+TGG | 0.522276 | 5.1:+60134875 | None:intergenic |
| TGCAGCTTTGGTGCCTCTAG+AGG | 0.535834 | 5.1:-60135580 | MS.gene017358:intron |
| CCAGGCAATGGTAGTGGCAA+AGG | 0.540554 | 5.1:-60135190 | MS.gene017358:intron |
| ATCTCCCTTAATTCCTCTAG+AGG | 0.547571 | 5.1:+60135567 | None:intergenic |
| TTGCCCGGTTACTGTAGTCA+AGG | 0.560158 | 5.1:-60134910 | MS.gene017358:CDS |
| AGGTGTATTGGGGAGATCCA+AGG | 0.560692 | 5.1:-60135170 | MS.gene017358:CDS |
| GAATGCAACCTTCCAAGTCT+AGG | 0.571630 | 5.1:-60134887 | MS.gene017358:CDS |
| AAAGCAATATGGAATTGCTA+AGG | 0.573242 | 5.1:-60135535 | MS.gene017358:CDS |
| ACGCATAGTTGGAGTAGCTA+TGG | 0.578284 | 5.1:-60136184 | MS.gene017358:CDS |
| TGCCCGGTTACTGTAGTCAA+GGG | 0.580340 | 5.1:-60134909 | MS.gene017358:CDS |
| GGTGACAAATGCTTCTTGCC+CGG | 0.585729 | 5.1:-60134925 | MS.gene017358:CDS |
| AATCAATGCCTAGACTTGGA+AGG | 0.590106 | 5.1:+60134879 | None:intergenic |
| GGTGTATTGGGGAGATCCAA+GGG | 0.593103 | 5.1:-60135169 | MS.gene017358:CDS |
| CTAAGTGCTAATTTGCTGGT+AGG | 0.598950 | 5.1:+60136153 | None:intergenic |
| TCATTGGTTATTGGAAGCAG+GGG | 0.616498 | 5.1:-60135108 | MS.gene017358:CDS |
| CTTTCTAGTATGATCAGCTG+AGG | 0.630194 | 5.1:+60136068 | None:intergenic |
| TTCCCTTGACTACAGTAACC+GGG | 0.638321 | 5.1:+60134907 | None:intergenic |
| CTAGTATGATCAGCTGAGGG+AGG | 0.638440 | 5.1:+60136072 | None:intergenic |
| TTTCTAGTATGATCAGCTGA+GGG | 0.653905 | 5.1:+60136069 | None:intergenic |
| GTAGTGGCAAAGGTGTATTG+GGG | 0.678633 | 5.1:-60135180 | MS.gene017358:CDS |
| AGGCAGTGTTAGCAAGCATG+TGG | 0.730937 | 5.1:-60134946 | MS.gene017358:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTCATGTTATTAT+CGG | + | chr5.1:60135717-60135736 | None:intergenic | 15.0% |
| !! | ATAAACTTTACAAAGCAATA+TGG | - | chr5.1:60135530-60135549 | MS.gene017358:CDS | 20.0% |
| !! | TATGTATAAAAGAAAGAGAA+TGG | + | chr5.1:60135072-60135091 | None:intergenic | 20.0% |
| !!! | TAAACTATAGTACCTTTTAA+TGG | + | chr5.1:60136002-60136021 | None:intergenic | 20.0% |
| ! | TATGTTGTATAGGTTTATCT+TGG | - | chr5.1:60135414-60135433 | MS.gene017358:intron | 25.0% |
| ! | TTAATAACTACAGAAAACCA+CGG | + | chr5.1:60135229-60135248 | None:intergenic | 25.0% |
| !!! | TGACAATTTTGTGTTTTGTT+TGG | - | chr5.1:60135464-60135483 | MS.gene017358:intron | 25.0% |
| !!! | TTTTTTATGTGTGTCTTTGT+TGG | - | chr5.1:60135854-60135873 | MS.gene017358:intron | 25.0% |
| AAACAACATAAATACCCCTT+TGG | + | chr5.1:60135606-60135625 | None:intergenic | 30.0% | |
| AAAGCAATATGGAATTGCTA+AGG | - | chr5.1:60135541-60135560 | MS.gene017358:CDS | 30.0% | |
| CTATGATACTCAAAGAATTG+CGG | - | chr5.1:60135114-60135133 | MS.gene017358:CDS | 30.0% | |
| GCACATACTATATGTTGTAT+AGG | - | chr5.1:60135404-60135423 | MS.gene017358:intron | 30.0% | |
| TCAAGAATATCTATGACTTC+AGG | + | chr5.1:60135569-60135588 | None:intergenic | 30.0% | |
| TGCTGAAACAATCTCATTTA+TGG | - | chr5.1:60135298-60135317 | MS.gene017358:intron | 30.0% | |
| TGGTGTAGTTAACACATATA+TGG | - | chr5.1:60135827-60135846 | MS.gene017358:intron | 30.0% | |
| ! | AAGATTTTAAATAGCAGTCG+TGG | + | chr5.1:60135278-60135297 | None:intergenic | 30.0% |
| ! | GATTTTTGATGTCTCAACAA+CGG | + | chr5.1:60135330-60135349 | None:intergenic | 30.0% |
| AAAAATCCCTGAATGCAATC+TGG | + | chr5.1:60135366-60135385 | None:intergenic | 35.0% | |
| AAAATCCCTGAATGCAATCT+GGG | + | chr5.1:60135365-60135384 | None:intergenic | 35.0% | |
| AAACTGCCTCAAAAACCAAA+GGG | - | chr5.1:60135588-60135607 | MS.gene017358:intron | 35.0% | |
| AAATCGACTATAATTGACCG+TGG | - | chr5.1:60135209-60135228 | MS.gene017358:intron | 35.0% | |
| CATATAGTATGTGCTAAGCA+AGG | + | chr5.1:60135398-60135417 | None:intergenic | 35.0% | |
| ! | CTTCATTTCAGTGTGTTGTT+AGG | - | chr5.1:60136110-60136129 | MS.gene017358:CDS | 35.0% |
| ! | TTTCTAGTATGATCAGCTGA+GGG | + | chr5.1:60135010-60135029 | None:intergenic | 35.0% |
| !! | AGTCGATTTTGCCTCAATTA+TGG | + | chr5.1:60135198-60135217 | None:intergenic | 35.0% |
| !!! | AAATACCCCTTTGGTTTTTG+AGG | + | chr5.1:60135597-60135616 | None:intergenic | 35.0% |
| AACTGCCTCAAAAACCAAAG+GGG | - | chr5.1:60135589-60135608 | MS.gene017358:intron | 40.0% | |
| AGATCTTCATCTGGACTCAT+TGG | - | chr5.1:60135952-60135971 | MS.gene017358:intron | 40.0% | |
| ATCTCCCTTAATTCCTCTAG+AGG | + | chr5.1:60135512-60135531 | None:intergenic | 40.0% | |
| ATTCCCTTGACTACAGTAAC+CGG | + | chr5.1:60136173-60136192 | None:intergenic | 40.0% | |
| ATTGCGGTTATATACGACTG+TGG | - | chr5.1:60135130-60135149 | MS.gene017358:CDS | 40.0% | |
| CCAGCAAATTAGCACTTAGA+TGG | - | chr5.1:60134927-60134946 | MS.gene017358:CDS | 40.0% | |
| CGATGCTTCATAGGAATGTA+TGG | - | chr5.1:60135807-60135826 | MS.gene017358:intron | 40.0% | |
| CTCAGCTGATCATACTAGAA+AGG | - | chr5.1:60135009-60135028 | MS.gene017358:intron | 40.0% | |
| CTTGTATCTGTGTCAGATAG+TGG | - | chr5.1:60135762-60135781 | MS.gene017358:intron | 40.0% | |
| GAAACTGCCTCAAAAACCAA+AGG | - | chr5.1:60135587-60135606 | MS.gene017358:intron | 40.0% | |
| TCTGATGTCTAAATCTGCGT+CGG | + | chr5.1:60135681-60135700 | None:intergenic | 40.0% | |
| TGTCTCTACGACCATAATTG+AGG | - | chr5.1:60135184-60135203 | MS.gene017358:CDS | 40.0% | |
| ! | ACTCATTGGTTATTGGAAGC+AGG | - | chr5.1:60135966-60135985 | MS.gene017358:intron | 40.0% |
| ! | CATCTGGACTCATTGGTTAT+TGG | - | chr5.1:60135959-60135978 | MS.gene017358:intron | 40.0% |
| ! | CCATCTAAGTGCTAATTTGC+TGG | + | chr5.1:60134930-60134949 | None:intergenic | 40.0% |
| ! | CTCATTGGTTATTGGAAGCA+GGG | - | chr5.1:60135967-60135986 | MS.gene017358:intron | 40.0% |
| ! | CTTTCTAGTATGATCAGCTG+AGG | + | chr5.1:60135011-60135030 | None:intergenic | 40.0% |
| ! | GGGGTTTAGGTTCCATTAAA+AGG | - | chr5.1:60135987-60136006 | MS.gene017358:intron | 40.0% |
| ! | TCATTGGTTATTGGAAGCAG+GGG | - | chr5.1:60135968-60135987 | MS.gene017358:intron | 40.0% |
| !! | AAGGAGCTTTTTGAAGACAC+TGG | - | chr5.1:60135028-60135047 | MS.gene017358:intron | 40.0% |
| !! | CTAAGTGCTAATTTGCTGGT+AGG | + | chr5.1:60134926-60134945 | None:intergenic | 40.0% |
| !! | CTTTGTTGGTTTCTTGAACC+AGG | - | chr5.1:60135868-60135887 | MS.gene017358:intron | 40.0% |
| !! | TGGTTGATGATTTGCAGCTT+TGG | - | chr5.1:60135484-60135503 | MS.gene017358:intron | 40.0% |
| !! | TTGAAGTGTCGATGCTTCAT+AGG | - | chr5.1:60135798-60135817 | MS.gene017358:intron | 40.0% |
| ACATCGAAACCCTGATGTTG+CGG | + | chr5.1:60135167-60135186 | None:intergenic | 45.0% | |
| ACGCATAGTTGGAGTAGCTA+TGG | - | chr5.1:60134892-60134911 | MS.gene017358:CDS | 45.0% | |
| GAATGCAACCTTCCAAGTCT+AGG | - | chr5.1:60136189-60136208 | MS.gene017358:CDS | 45.0% | |
| GCATTGCACAATTTCTCCCT+TGG | + | chr5.1:60135926-60135945 | None:intergenic | 45.0% | |
| GGTTATATACGACTGTGGTC+TGG | - | chr5.1:60135135-60135154 | MS.gene017358:CDS | 45.0% | |
| GTTATTGGAAGCAGGGGTTT+AGG | - | chr5.1:60135974-60135993 | MS.gene017358:intron | 45.0% | |
| TGCTGTGCAAGATCTTCATC+TGG | - | chr5.1:60135943-60135962 | MS.gene017358:intron | 45.0% | |
| TGGTTTCTTGAACCAGGCAA+TGG | - | chr5.1:60135874-60135893 | MS.gene017358:intron | 45.0% | |
| TTCCCTTGACTACAGTAACC+GGG | + | chr5.1:60136172-60136191 | None:intergenic | 45.0% | |
| ! | ATGGCAAAAGCACGCATAGT+TGG | - | chr5.1:60134881-60134900 | MS.gene017358:CDS | 45.0% |
| ! | GGTAGTGGCAAAGGTGTATT+GGG | - | chr5.1:60135895-60135914 | MS.gene017358:intron | 45.0% |
| ! | GGTGCCTCTAGAGGAATTAA+GGG | - | chr5.1:60135505-60135524 | MS.gene017358:CDS | 45.0% |
| ! | GTAGTGGCAAAGGTGTATTG+GGG | - | chr5.1:60135896-60135915 | MS.gene017358:intron | 45.0% |
| ! | TGGTGCCTCTAGAGGAATTA+AGG | - | chr5.1:60135504-60135523 | MS.gene017358:CDS | 45.0% |
| !! | TGGTAGTGGCAAAGGTGTAT+TGG | - | chr5.1:60135894-60135913 | MS.gene017358:intron | 45.0% |
| AGGCAGTGTTAGCAAGCATG+TGG | - | chr5.1:60136130-60136149 | MS.gene017358:CDS | 50.0% | |
| AGGTGTATTGGGGAGATCCA+AGG | - | chr5.1:60135906-60135925 | MS.gene017358:intron | 50.0% | |
| ATACGACTGTGGTCTGGACT+GGG | - | chr5.1:60135141-60135160 | MS.gene017358:CDS | 50.0% | |
| CTAGTATGATCAGCTGAGGG+AGG | + | chr5.1:60135007-60135026 | None:intergenic | 50.0% | |
| CTTGAACCAGGCAATGGTAG+TGG | - | chr5.1:60135880-60135899 | MS.gene017358:intron | 50.0% | |
| GGTGACAAATGCTTCTTGCC+CGG | - | chr5.1:60136151-60136170 | MS.gene017358:CDS | 50.0% | |
| GGTGTATTGGGGAGATCCAA+GGG | - | chr5.1:60135907-60135926 | MS.gene017358:intron | 50.0% | |
| TATACGACTGTGGTCTGGAC+TGG | - | chr5.1:60135140-60135159 | MS.gene017358:CDS | 50.0% | |
| TGCCCGGTTACTGTAGTCAA+GGG | - | chr5.1:60136167-60136186 | MS.gene017358:CDS | 50.0% | |
| TTGCCCGGTTACTGTAGTCA+AGG | - | chr5.1:60136166-60136185 | MS.gene017358:CDS | 50.0% | |
| CCTTTGCCACTACCATTGCC+TGG | + | chr5.1:60135889-60135908 | None:intergenic | 55.0% | |
| CGCAGCCCAGATTGCATTCA+GGG | - | chr5.1:60135357-60135376 | MS.gene017358:intron | 55.0% | |
| TCGCAGCCCAGATTGCATTC+AGG | - | chr5.1:60135356-60135375 | MS.gene017358:intron | 55.0% | |
| !! | CCAGGCAATGGTAGTGGCAA+AGG | - | chr5.1:60135886-60135905 | MS.gene017358:intron | 55.0% |
| !! | TGCAGCTTTGGTGCCTCTAG+AGG | - | chr5.1:60135496-60135515 | MS.gene017358:CDS | 55.0% |
| ! | TGGACTGGGCCGCAACATCA+GGG | - | chr5.1:60135155-60135174 | MS.gene017358:CDS | 60.0% |
| ! | CTGGACTGGGCCGCAACATC+AGG | - | chr5.1:60135154-60135173 | MS.gene017358:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 60134881 | 60136217 | 60134881 | ID=MS.gene017358 |
| chr5.1 | mRNA | 60134881 | 60136217 | 60134881 | ID=MS.gene017358.t1;Parent=MS.gene017358 |
| chr5.1 | exon | 60136043 | 60136217 | 60136043 | ID=MS.gene017358.t1.exon1;Parent=MS.gene017358.t1 |
| chr5.1 | CDS | 60136043 | 60136217 | 60136043 | ID=cds.MS.gene017358.t1;Parent=MS.gene017358.t1 |
| chr5.1 | exon | 60135488 | 60135597 | 60135488 | ID=MS.gene017358.t1.exon2;Parent=MS.gene017358.t1 |
| chr5.1 | CDS | 60135488 | 60135597 | 60135488 | ID=cds.MS.gene017358.t1;Parent=MS.gene017358.t1 |
| chr5.1 | exon | 60135090 | 60135208 | 60135090 | ID=MS.gene017358.t1.exon3;Parent=MS.gene017358.t1 |
| chr5.1 | CDS | 60135090 | 60135208 | 60135090 | ID=cds.MS.gene017358.t1;Parent=MS.gene017358.t1 |
| chr5.1 | exon | 60134881 | 60134977 | 60134881 | ID=MS.gene017358.t1.exon4;Parent=MS.gene017358.t1 |
| chr5.1 | CDS | 60134881 | 60134977 | 60134881 | ID=cds.MS.gene017358.t1;Parent=MS.gene017358.t1 |
| Gene Sequence |
| Protein sequence |
