Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063633.t1 | XP_003616191.1 | 95.8 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 5.20E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063633.t1 | Q8VYN9 | 30.6 | 160 | 96 | 3 | 7 | 157 | 50 | 203 | 7.0e-12 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063633.t1 | G7KFW2 | 95.8 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 3.7e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005525 | MS.gene063633 | PPI |
| MS.gene037687 | MS.gene063633 | PPI |
| MS.gene034635 | MS.gene063633 | PPI |
| MS.gene92557 | MS.gene063633 | PPI |
| MS.gene20798 | MS.gene063633 | PPI |
| MS.gene063633 | MS.gene010109 | PPI |
| MS.gene73234 | MS.gene063633 | PPI |
| MS.gene063633 | MS.gene46499 | PPI |
| MS.gene39217 | MS.gene063633 | PPI |
| MS.gene048106 | MS.gene063633 | PPI |
| MS.gene063633 | MS.gene050004 | PPI |
| MS.gene20848 | MS.gene063633 | PPI |
| MS.gene063633 | MS.gene39214 | PPI |
| MS.gene034636 | MS.gene063633 | PPI |
| MS.gene39213 | MS.gene063633 | PPI |
| MS.gene07276 | MS.gene063633 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063633.t1 | MTR_5g077130 | 95.783 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 1.09e-116 | 327 |
| MS.gene063633.t1 | MTR_5g077130 | 95.210 | 167 | 7 | 1 | 1 | 166 | 1 | 167 | 5.33e-115 | 323 |
| MS.gene063633.t1 | MTR_4g019800 | 54.545 | 165 | 75 | 0 | 1 | 165 | 1 | 165 | 4.45e-60 | 184 |
| MS.gene063633.t1 | MTR_4g064933 | 54.777 | 157 | 71 | 0 | 1 | 157 | 1 | 157 | 6.49e-59 | 181 |
| MS.gene063633.t1 | MTR_7g065770 | 49.045 | 157 | 80 | 0 | 1 | 157 | 1 | 157 | 4.32e-54 | 169 |
| MS.gene063633.t1 | MTR_2g034200 | 51.592 | 157 | 76 | 0 | 1 | 157 | 1 | 157 | 1.89e-52 | 164 |
| MS.gene063633.t1 | MTR_1g087200 | 35.152 | 165 | 91 | 6 | 3 | 161 | 4 | 158 | 8.93e-21 | 83.6 |
| MS.gene063633.t1 | MTR_1g083950 | 35.220 | 159 | 87 | 6 | 4 | 157 | 8 | 155 | 6.21e-19 | 79.3 |
| MS.gene063633.t1 | MTR_5g065980 | 35.152 | 165 | 91 | 4 | 6 | 158 | 9 | 169 | 9.20e-19 | 79.0 |
| MS.gene063633.t1 | MTR_5g065980 | 36.747 | 166 | 89 | 5 | 6 | 158 | 9 | 171 | 3.89e-18 | 77.4 |
| MS.gene063633.t1 | MTR_1g054750 | 26.596 | 188 | 89 | 5 | 7 | 166 | 24 | 190 | 2.91e-16 | 72.8 |
| MS.gene063633.t1 | MTR_1g054765 | 26.984 | 189 | 93 | 4 | 7 | 166 | 5 | 177 | 2.22e-15 | 70.1 |
| MS.gene063633.t1 | MTR_6g006190 | 30.612 | 147 | 91 | 3 | 14 | 157 | 24 | 162 | 4.37e-15 | 69.3 |
| MS.gene063633.t1 | MTR_1g088640 | 29.221 | 154 | 93 | 5 | 9 | 157 | 16 | 158 | 5.30e-14 | 66.2 |
| MS.gene063633.t1 | MTR_2g089350 | 30.061 | 163 | 98 | 4 | 5 | 157 | 25 | 181 | 1.39e-13 | 66.2 |
| MS.gene063633.t1 | MTR_1g088640 | 29.032 | 155 | 95 | 5 | 9 | 157 | 16 | 161 | 4.86e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063633.t1 | AT3G03270 | 70.253 | 158 | 47 | 0 | 1 | 158 | 1 | 158 | 2.66e-79 | 232 |
| MS.gene063633.t1 | AT3G03270 | 68.657 | 134 | 42 | 0 | 1 | 134 | 1 | 134 | 1.94e-63 | 194 |
| MS.gene063633.t1 | AT3G53990 | 50.318 | 157 | 78 | 0 | 1 | 157 | 1 | 157 | 2.86e-54 | 169 |
| MS.gene063633.t1 | AT3G17020 | 45.513 | 156 | 84 | 1 | 4 | 158 | 6 | 161 | 9.21e-49 | 155 |
| MS.gene063633.t1 | AT3G53990 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 2.40e-24 | 92.0 |
| MS.gene063633.t1 | AT3G62550 | 34.969 | 163 | 87 | 5 | 3 | 157 | 5 | 156 | 8.73e-19 | 78.6 |
| MS.gene063633.t1 | AT1G09740 | 37.107 | 159 | 88 | 4 | 7 | 157 | 10 | 164 | 1.13e-18 | 78.6 |
| MS.gene063633.t1 | AT1G09740 | 37.107 | 159 | 88 | 4 | 7 | 157 | 10 | 164 | 1.13e-18 | 78.6 |
| MS.gene063633.t1 | AT3G58450 | 31.707 | 164 | 85 | 6 | 7 | 157 | 32 | 181 | 7.42e-17 | 74.7 |
| MS.gene063633.t1 | AT3G17020 | 35.870 | 92 | 58 | 1 | 4 | 94 | 6 | 97 | 8.79e-17 | 72.4 |
| MS.gene063633.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene063633.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene063633.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene063633.t1 | AT1G11360 | 29.487 | 156 | 107 | 1 | 5 | 157 | 38 | 193 | 2.90e-16 | 73.9 |
| MS.gene063633.t1 | AT1G68300 | 32.468 | 154 | 93 | 4 | 7 | 157 | 12 | 157 | 3.10e-16 | 72.0 |
| MS.gene063633.t1 | AT3G01520 | 29.932 | 147 | 92 | 3 | 14 | 157 | 24 | 162 | 3.62e-16 | 72.4 |
| MS.gene063633.t1 | AT3G58450 | 31.953 | 169 | 85 | 6 | 7 | 157 | 32 | 188 | 6.42e-16 | 72.0 |
| MS.gene063633.t1 | AT5G14680 | 29.252 | 147 | 93 | 3 | 14 | 157 | 24 | 162 | 1.68e-15 | 70.5 |
| MS.gene063633.t1 | AT3G11930 | 29.560 | 159 | 101 | 2 | 9 | 157 | 37 | 194 | 6.38e-15 | 69.3 |
| MS.gene063633.t1 | AT3G11930 | 29.560 | 159 | 99 | 3 | 9 | 157 | 37 | 192 | 1.39e-14 | 68.6 |
| MS.gene063633.t1 | AT3G11930 | 29.560 | 159 | 100 | 3 | 9 | 157 | 37 | 193 | 2.93e-14 | 67.8 |
| MS.gene063633.t1 | AT2G47710 | 28.571 | 154 | 96 | 4 | 9 | 157 | 12 | 156 | 4.41e-11 | 58.5 |
| MS.gene063633.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.49e-11 | 58.9 |
| MS.gene063633.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.49e-11 | 58.9 |
| MS.gene063633.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.58e-11 | 58.9 |
| MS.gene063633.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 8.58e-11 | 58.9 |
| MS.gene063633.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 9.18e-11 | 58.9 |
| MS.gene063633.t1 | AT5G54430 | 29.530 | 149 | 90 | 3 | 5 | 144 | 48 | 190 | 9.18e-11 | 58.9 |
Find 43 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGCCTCTAGAGGAATTA+AGG | 0.233780 | 5.2:-65882757 | MS.gene063633:CDS |
| CATCTGGACTCATTGGTTAT+TGG | 0.247760 | 5.2:-65882008 | MS.gene063633:CDS |
| GGTAGTGGCAAAGGTGTATT+GGG | 0.310523 | 5.2:-65882072 | MS.gene063633:CDS |
| CTTCATTTCAGTGTGTTGTT+AGG | 0.317283 | 5.2:-65881857 | MS.gene063633:intron |
| GTTATTGGAAGCAGGGGTTT+AGG | 0.321337 | 5.2:-65881993 | MS.gene063633:CDS |
| GGGGTTTAGGTTCCATTAAA+AGG | 0.346706 | 5.2:-65881980 | MS.gene063633:intron |
| TCAAGAATATCTATGACTTC+AGG | 0.358570 | 5.2:+65882695 | None:intergenic |
| CCAGCAAATTAGCACTTAGA+TGG | 0.389656 | 5.2:-65883334 | MS.gene063633:CDS |
| CCATCTAAGTGCTAATTTGC+TGG | 0.396841 | 5.2:+65883334 | None:intergenic |
| AGATCTTCATCTGGACTCAT+TGG | 0.398485 | 5.2:-65882015 | MS.gene063633:CDS |
| AAACAACATAAATACCCCTT+TGG | 0.402357 | 5.2:+65882658 | None:intergenic |
| ATAAACTTTACAAAGCAATA+TGG | 0.410129 | 5.2:-65882731 | MS.gene063633:CDS |
| ATTCCCTTGACTACAGTAAC+CGG | 0.414500 | 5.2:+65881797 | None:intergenic |
| TGGTAGTGGCAAAGGTGTAT+TGG | 0.429624 | 5.2:-65882073 | MS.gene063633:CDS |
| GCATTGCACAATTTCTCCCT+TGG | 0.434268 | 5.2:+65882044 | None:intergenic |
| GGTGCCTCTAGAGGAATTAA+GGG | 0.447240 | 5.2:-65882756 | MS.gene063633:CDS |
| TGCTGTGCAAGATCTTCATC+TGG | 0.451178 | 5.2:-65882024 | MS.gene063633:CDS |
| CTCATTGGTTATTGGAAGCA+GGG | 0.470129 | 5.2:-65882000 | MS.gene063633:CDS |
| ACTCATTGGTTATTGGAAGC+AGG | 0.470238 | 5.2:-65882001 | MS.gene063633:CDS |
| ATGGCAAAAGCACGCATAGT+TGG | 0.471789 | 5.2:-65883380 | MS.gene063633:CDS |
| CTTGAACCAGGCAATGGTAG+TGG | 0.472382 | 5.2:-65882087 | MS.gene063633:intron |
| CTCAGCTGATCATACTAGAA+AGG | 0.517520 | 5.2:-65883252 | MS.gene063633:CDS |
| ATCAGATCAATGCCTAGACT+TGG | 0.531334 | 5.2:+65881766 | None:intergenic |
| TGCAGCTTTGGTGCCTCTAG+AGG | 0.535834 | 5.2:-65882765 | MS.gene063633:intron |
| CCAGGCAATGGTAGTGGCAA+AGG | 0.540554 | 5.2:-65882081 | MS.gene063633:intron |
| ATCTCCCTTAATTCCTCTAG+AGG | 0.547571 | 5.2:+65882752 | None:intergenic |
| TTGCCCGGTTACTGTAGTCA+AGG | 0.560158 | 5.2:-65881801 | MS.gene063633:CDS |
| AGGTGTATTGGGGAGATCCA+AGG | 0.560692 | 5.2:-65882061 | MS.gene063633:CDS |
| GAATGCAACCTTCCAAGTCT+AGG | 0.571630 | 5.2:-65881778 | MS.gene063633:CDS |
| AAAGCAATATGGAATTGCTA+AGG | 0.573242 | 5.2:-65882720 | MS.gene063633:CDS |
| ACGCATAGTTGGAGTAGCTA+TGG | 0.578284 | 5.2:-65883369 | MS.gene063633:CDS |
| TGCCCGGTTACTGTAGTCAA+GGG | 0.580340 | 5.2:-65881800 | MS.gene063633:CDS |
| GGTGACAAATGCTTCTTGCC+CGG | 0.585729 | 5.2:-65881816 | MS.gene063633:CDS |
| GGTGTATTGGGGAGATCCAA+GGG | 0.593103 | 5.2:-65882060 | MS.gene063633:CDS |
| CTAAGTGCTAATTTGCTGGT+AGG | 0.598950 | 5.2:+65883338 | None:intergenic |
| GATCAATGCCTAGACTTGGA+AGG | 0.599164 | 5.2:+65881770 | None:intergenic |
| TCATTGGTTATTGGAAGCAG+GGG | 0.616498 | 5.2:-65881999 | MS.gene063633:CDS |
| CTTTCTAGTATGATCAGCTG+AGG | 0.630194 | 5.2:+65883253 | None:intergenic |
| TTCCCTTGACTACAGTAACC+GGG | 0.638321 | 5.2:+65881798 | None:intergenic |
| CTAGTATGATCAGCTGAGGG+AGG | 0.638440 | 5.2:+65883257 | None:intergenic |
| TTTCTAGTATGATCAGCTGA+GGG | 0.653905 | 5.2:+65883254 | None:intergenic |
| GTAGTGGCAAAGGTGTATTG+GGG | 0.678633 | 5.2:-65882071 | MS.gene063633:CDS |
| AGGCAGTGTTAGCAAGCATG+TGG | 0.730937 | 5.2:-65881837 | MS.gene063633:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATGTTGTTTTTTTTA+GGG | - | chr5.2:65882503-65882522 | MS.gene063633:intron | 10.0% |
| !! | CAAAAATAACACTAAAAAAA+AGG | + | chr5.2:65882798-65882817 | None:intergenic | 15.0% |
| !!! | GTATTTATGTTGTTTTTTTT+AGG | - | chr5.2:65882502-65882521 | MS.gene063633:intron | 15.0% |
| !!! | TTTTTTTCTCATGTTATTAT+CGG | + | chr5.2:65882902-65882921 | None:intergenic | 15.0% |
| !! | ATAAACTTTACAAAGCAATA+TGG | - | chr5.2:65882421-65882440 | MS.gene063633:intron | 20.0% |
| !! | TATGTATAAAAGAAAGAGAA+TGG | + | chr5.2:65881963-65881982 | None:intergenic | 20.0% |
| !!! | TAAACTATAGTACCTTTTAA+TGG | + | chr5.2:65883187-65883206 | None:intergenic | 20.0% |
| ! | TATGTTGTATAGGTTTATCT+TGG | - | chr5.2:65882305-65882324 | MS.gene063633:intron | 25.0% |
| ! | TTAATAACTACAGAAAACCA+CGG | + | chr5.2:65882120-65882139 | None:intergenic | 25.0% |
| !! | ATAGATCCTTTAAGTTTCAA+AGG | + | chr5.2:65882732-65882751 | None:intergenic | 25.0% |
| !! | CTGAAACTTTAGAAACTTAA+AGG | - | chr5.2:65882694-65882713 | MS.gene063633:CDS | 25.0% |
| !! | CTGAAACTTTAGAAACTTAA+AGG | + | chr5.2:65882713-65882694 | None:intergenic | 25.0% |
| !!! | AAGTTTCTAAAGTTTCAGAT+AGG | - | chr5.2:65882609-65882628 | MS.gene063633:intron | 25.0% |
| !!! | AAGTTTCTAAAGTTTCAGAT+AGG | + | chr5.2:65882628-65882609 | None:intergenic | 25.0% |
| !!! | TGACAATTTTGTGTTTTGTT+TGG | - | chr5.2:65882355-65882374 | MS.gene063633:intron | 25.0% |
| !!! | TTTTTTATGTGTGTCTTTGT+TGG | - | chr5.2:65883039-65883058 | MS.gene063633:intron | 25.0% |
| AAACAACATAAATACCCCTT+TGG | + | chr5.2:65882497-65882516 | None:intergenic | 30.0% | |
| AAAGCAATATGGAATTGCTA+AGG | - | chr5.2:65882432-65882451 | MS.gene063633:intron | 30.0% | |
| AAGTTTCAAAGGTTACAGAT+AGG | - | chr5.2:65882580-65882599 | MS.gene063633:intron | 30.0% | |
| AAGTTTCAAAGGTTACAGAT+AGG | + | chr5.2:65882599-65882580 | None:intergenic | 30.0% | |
| CTATGATACTCAAAGAATTG+CGG | - | chr5.2:65882005-65882024 | MS.gene063633:CDS | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | chr5.2:65882636-65882655 | None:intergenic | 30.0% | |
| GCACATACTATATGTTGTAT+AGG | - | chr5.2:65882295-65882314 | MS.gene063633:intron | 30.0% | |
| GTTACAAACGTGAAACTTAA+AGG | - | chr5.2:65882754-65882773 | MS.gene063633:CDS | 30.0% | |
| GTTACAAACGTGAAACTTAA+AGG | + | chr5.2:65882773-65882754 | None:intergenic | 30.0% | |
| TCAAGAATATCTATGACTTC+AGG | + | chr5.2:65882460-65882479 | None:intergenic | 30.0% | |
| TGCTGAAACAATCTCATTTA+TGG | - | chr5.2:65882189-65882208 | MS.gene063633:intron | 30.0% | |
| TGGTGTAGTTAACACATATA+TGG | - | chr5.2:65883012-65883031 | MS.gene063633:intron | 30.0% | |
| ! | AAGATTTTAAATAGCAGTCG+TGG | + | chr5.2:65882169-65882188 | None:intergenic | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | - | chr5.2:65882569-65882588 | MS.gene063633:intron | 30.0% |
| ! | GATTTTTGATGTCTCAACAA+CGG | + | chr5.2:65882221-65882240 | None:intergenic | 30.0% |
| !! | CTGTAACCTTTGAAACTTAA+AGG | - | chr5.2:65882723-65882742 | MS.gene063633:CDS | 30.0% |
| !! | CTGTAACCTTTGAAACTTAA+AGG | + | chr5.2:65882742-65882723 | None:intergenic | 30.0% |
| AAAAATCCCTGAATGCAATC+TGG | + | chr5.2:65882257-65882276 | None:intergenic | 35.0% | |
| AAAATCCCTGAATGCAATCT+GGG | + | chr5.2:65882256-65882275 | None:intergenic | 35.0% | |
| AAACTGCCTCAAAAACCAAA+GGG | - | chr5.2:65882479-65882498 | MS.gene063633:intron | 35.0% | |
| AAATCGACTATAATTGACCG+TGG | - | chr5.2:65882100-65882119 | MS.gene063633:intron | 35.0% | |
| AGTTTCAGATAGGTCCTTAA+CGG | + | chr5.2:65882682-65882701 | None:intergenic | 35.0% | |
| CATATAGTATGTGCTAAGCA+AGG | + | chr5.2:65882289-65882308 | None:intergenic | 35.0% | |
| GTTTCACGTTTGTAACAGAT+AGG | - | chr5.2:65882551-65882570 | MS.gene063633:intron | 35.0% | |
| ! | CTTCATTTCAGTGTGTTGTT+AGG | - | chr5.2:65883295-65883314 | MS.gene063633:CDS | 35.0% |
| ! | TTTCTAGTATGATCAGCTGA+GGG | + | chr5.2:65881901-65881920 | None:intergenic | 35.0% |
| !! | AGTCGATTTTGCCTCAATTA+TGG | + | chr5.2:65882089-65882108 | None:intergenic | 35.0% |
| !!! | AAATACCCCTTTGGTTTTTG+AGG | + | chr5.2:65882488-65882507 | None:intergenic | 35.0% |
| AAAAAGGCCAAATATCTCCC+TGG | + | chr5.2:65882782-65882801 | None:intergenic | 40.0% | |
| AAAAGGCCAAATATCTCCCT+GGG | + | chr5.2:65882781-65882800 | None:intergenic | 40.0% | |
| AACTGCCTCAAAAACCAAAG+GGG | - | chr5.2:65882480-65882499 | MS.gene063633:intron | 40.0% | |
| AGATCTTCATCTGGACTCAT+TGG | - | chr5.2:65883137-65883156 | MS.gene063633:intron | 40.0% | |
| ATCTCCCTTAATTCCTCTAG+AGG | + | chr5.2:65882403-65882422 | None:intergenic | 40.0% | |
| ATTCCCTTGACTACAGTAAC+CGG | + | chr5.2:65883358-65883377 | None:intergenic | 40.0% | |
| ATTGCGGTTATATACGACTG+TGG | - | chr5.2:65882021-65882040 | MS.gene063633:CDS | 40.0% | |
| CCAGCAAATTAGCACTTAGA+TGG | - | chr5.2:65881818-65881837 | MS.gene063633:CDS | 40.0% | |
| CGATGCTTCATAGGAATGTA+TGG | - | chr5.2:65882992-65883011 | MS.gene063633:intron | 40.0% | |
| CTCAGCTGATCATACTAGAA+AGG | - | chr5.2:65881900-65881919 | MS.gene063633:intron | 40.0% | |
| CTTGTATCTGTGTCAGATAG+TGG | - | chr5.2:65882947-65882966 | MS.gene063633:intron | 40.0% | |
| CTTTCTATCAACCTCCGTTA+AGG | - | chr5.2:65882665-65882684 | MS.gene063633:intron | 40.0% | |
| GAAACTGCCTCAAAAACCAA+AGG | - | chr5.2:65882478-65882497 | MS.gene063633:intron | 40.0% | |
| TCTGATGTCTAAATCTGCGT+CGG | + | chr5.2:65882866-65882885 | None:intergenic | 40.0% | |
| TGTCTCTACGACCATAATTG+AGG | - | chr5.2:65882075-65882094 | MS.gene063633:CDS | 40.0% | |
| ! | ACTCATTGGTTATTGGAAGC+AGG | - | chr5.2:65883151-65883170 | MS.gene063633:intron | 40.0% |
| ! | CATCTGGACTCATTGGTTAT+TGG | - | chr5.2:65883144-65883163 | MS.gene063633:intron | 40.0% |
| ! | CCATCTAAGTGCTAATTTGC+TGG | + | chr5.2:65881821-65881840 | None:intergenic | 40.0% |
| ! | CTCATTGGTTATTGGAAGCA+GGG | - | chr5.2:65883152-65883171 | MS.gene063633:intron | 40.0% |
| ! | CTTTCTAGTATGATCAGCTG+AGG | + | chr5.2:65881902-65881921 | None:intergenic | 40.0% |
| ! | GGGGTTTAGGTTCCATTAAA+AGG | - | chr5.2:65883172-65883191 | MS.gene063633:intron | 40.0% |
| ! | TCATTGGTTATTGGAAGCAG+GGG | - | chr5.2:65883153-65883172 | MS.gene063633:intron | 40.0% |
| !! | AAGGAGCTTTTTGAAGACAC+TGG | - | chr5.2:65881919-65881938 | MS.gene063633:intron | 40.0% |
| !! | CTAAGTGCTAATTTGCTGGT+AGG | + | chr5.2:65881817-65881836 | None:intergenic | 40.0% |
| !! | CTTAACGGAGGTTGATAGAA+AGG | + | chr5.2:65882667-65882686 | None:intergenic | 40.0% |
| !! | CTTTGTTGGTTTCTTGAACC+AGG | - | chr5.2:65883053-65883072 | MS.gene063633:intron | 40.0% |
| !! | TGGTTGATGATTTGCAGCTT+TGG | - | chr5.2:65882375-65882394 | MS.gene063633:intron | 40.0% |
| !! | TTGAAGTGTCGATGCTTCAT+AGG | - | chr5.2:65882983-65883002 | MS.gene063633:intron | 40.0% |
| AAAGGACCCAGGGAGATATT+TGG | - | chr5.2:65882772-65882791 | MS.gene063633:intron | 45.0% | |
| ACATCGAAACCCTGATGTTG+CGG | + | chr5.2:65882058-65882077 | None:intergenic | 45.0% | |
| ACGCATAGTTGGAGTAGCTA+TGG | - | chr5.2:65881783-65881802 | MS.gene063633:CDS | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | - | chr5.2:65882761-65882780 | MS.gene063633:CDS | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | + | chr5.2:65882780-65882761 | None:intergenic | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | - | chr5.2:65882762-65882781 | MS.gene063633:CDS | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | + | chr5.2:65882781-65882762 | None:intergenic | 45.0% | |
| GAATGCAACCTTCCAAGTCT+AGG | - | chr5.2:65883374-65883393 | MS.gene063633:CDS | 45.0% | |
| GCATTGCACAATTTCTCCCT+TGG | + | chr5.2:65883111-65883130 | None:intergenic | 45.0% | |
| GGTTATATACGACTGTGGTC+TGG | - | chr5.2:65882026-65882045 | MS.gene063633:CDS | 45.0% | |
| GTTATTGGAAGCAGGGGTTT+AGG | - | chr5.2:65883159-65883178 | MS.gene063633:intron | 45.0% | |
| TGCTGTGCAAGATCTTCATC+TGG | - | chr5.2:65883128-65883147 | MS.gene063633:intron | 45.0% | |
| TGGTTTCTTGAACCAGGCAA+TGG | - | chr5.2:65883059-65883078 | MS.gene063633:intron | 45.0% | |
| TTCAGATAGGTCCTTAACGG+AGG | + | chr5.2:65882679-65882698 | None:intergenic | 45.0% | |
| TTCCCTTGACTACAGTAACC+GGG | + | chr5.2:65883357-65883376 | None:intergenic | 45.0% | |
| ! | ATGGCAAAAGCACGCATAGT+TGG | - | chr5.2:65881772-65881791 | MS.gene063633:CDS | 45.0% |
| ! | GGTAGTGGCAAAGGTGTATT+GGG | - | chr5.2:65883080-65883099 | MS.gene063633:intron | 45.0% |
| ! | GGTGCCTCTAGAGGAATTAA+GGG | - | chr5.2:65882396-65882415 | MS.gene063633:intron | 45.0% |
| ! | GTAGTGGCAAAGGTGTATTG+GGG | - | chr5.2:65883081-65883100 | MS.gene063633:intron | 45.0% |
| ! | TGGTGCCTCTAGAGGAATTA+AGG | - | chr5.2:65882395-65882414 | MS.gene063633:intron | 45.0% |
| !! | TGGTAGTGGCAAAGGTGTAT+TGG | - | chr5.2:65883079-65883098 | MS.gene063633:intron | 45.0% |
| AGGCAGTGTTAGCAAGCATG+TGG | - | chr5.2:65883315-65883334 | MS.gene063633:CDS | 50.0% | |
| AGGTGTATTGGGGAGATCCA+AGG | - | chr5.2:65883091-65883110 | MS.gene063633:intron | 50.0% | |
| ATACGACTGTGGTCTGGACT+GGG | - | chr5.2:65882032-65882051 | MS.gene063633:CDS | 50.0% | |
| CTAGTATGATCAGCTGAGGG+AGG | + | chr5.2:65881898-65881917 | None:intergenic | 50.0% | |
| CTTGAACCAGGCAATGGTAG+TGG | - | chr5.2:65883065-65883084 | MS.gene063633:intron | 50.0% | |
| GAAACTTAAAGGACCCAGGG+AGG | + | chr5.2:65882784-65882765 | None:intergenic | 50.0% | |
| GGTGACAAATGCTTCTTGCC+CGG | - | chr5.2:65883336-65883355 | MS.gene063633:CDS | 50.0% | |
| GGTGTATTGGGGAGATCCAA+GGG | - | chr5.2:65883092-65883111 | MS.gene063633:intron | 50.0% | |
| TATACGACTGTGGTCTGGAC+TGG | - | chr5.2:65882031-65882050 | MS.gene063633:CDS | 50.0% | |
| TGCCCGGTTACTGTAGTCAA+GGG | - | chr5.2:65883352-65883371 | MS.gene063633:CDS | 50.0% | |
| TTAGGGCCAAATACCTCCCT+GGG | - | chr5.2:65882520-65882539 | MS.gene063633:intron | 50.0% | |
| TTGCCCGGTTACTGTAGTCA+AGG | - | chr5.2:65883351-65883370 | MS.gene063633:CDS | 50.0% | |
| ! | TTTAGGGCCAAATACCTCCC+TGG | - | chr5.2:65882519-65882538 | MS.gene063633:intron | 50.0% |
| !! | AAAGGACCCAGGGAGGTATT+TGG | + | chr5.2:65882529-65882548 | None:intergenic | 50.0% |
| CCTTTGCCACTACCATTGCC+TGG | + | chr5.2:65883074-65883093 | None:intergenic | 55.0% | |
| CGCAGCCCAGATTGCATTCA+GGG | - | chr5.2:65882248-65882267 | MS.gene063633:intron | 55.0% | |
| TCGCAGCCCAGATTGCATTC+AGG | - | chr5.2:65882247-65882266 | MS.gene063633:intron | 55.0% | |
| !! | CCAGGCAATGGTAGTGGCAA+AGG | - | chr5.2:65883071-65883090 | MS.gene063633:intron | 55.0% |
| !! | TGCAGCTTTGGTGCCTCTAG+AGG | - | chr5.2:65882387-65882406 | MS.gene063633:intron | 55.0% |
| ! | TGGACTGGGCCGCAACATCA+GGG | - | chr5.2:65882046-65882065 | MS.gene063633:CDS | 60.0% |
| ! | CTGGACTGGGCCGCAACATC+AGG | - | chr5.2:65882045-65882064 | MS.gene063633:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 65881772 | 65883402 | 65881772 | ID=MS.gene063633 |
| chr5.2 | mRNA | 65881772 | 65883402 | 65881772 | ID=MS.gene063633.t1;Parent=MS.gene063633 |
| chr5.2 | exon | 65883228 | 65883402 | 65883228 | ID=MS.gene063633.t1.exon1;Parent=MS.gene063633.t1 |
| chr5.2 | CDS | 65883228 | 65883402 | 65883228 | ID=cds.MS.gene063633.t1;Parent=MS.gene063633.t1 |
| chr5.2 | exon | 65882673 | 65882782 | 65882673 | ID=MS.gene063633.t1.exon2;Parent=MS.gene063633.t1 |
| chr5.2 | CDS | 65882673 | 65882782 | 65882673 | ID=cds.MS.gene063633.t1;Parent=MS.gene063633.t1 |
| chr5.2 | exon | 65881981 | 65882099 | 65881981 | ID=MS.gene063633.t1.exon3;Parent=MS.gene063633.t1 |
| chr5.2 | CDS | 65881981 | 65882099 | 65881981 | ID=cds.MS.gene063633.t1;Parent=MS.gene063633.t1 |
| chr5.2 | exon | 65881772 | 65881868 | 65881772 | ID=MS.gene063633.t1.exon4;Parent=MS.gene063633.t1 |
| chr5.2 | CDS | 65881772 | 65881868 | 65881772 | ID=cds.MS.gene063633.t1;Parent=MS.gene063633.t1 |
| Gene Sequence |
| Protein sequence |
