Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050004.t1 | XP_003615271.1 | 97.2 | 178 | 4 | 1 | 1 | 178 | 1 | 177 | 1.30E-92 | 349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050004.t1 | Q8LGG8 | 29.3 | 147 | 90 | 4 | 23 | 169 | 30 | 162 | 3.7e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050004.t1 | G7KBJ3 | 97.2 | 178 | 4 | 1 | 1 | 178 | 1 | 177 | 9.5e-93 | 349.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92557 | MS.gene050004 | PPI |
| MS.gene20798 | MS.gene050004 | PPI |
| MS.gene39213 | MS.gene050004 | PPI |
| MS.gene005525 | MS.gene050004 | PPI |
| MS.gene73234 | MS.gene050004 | PPI |
| MS.gene037687 | MS.gene050004 | PPI |
| MS.gene034635 | MS.gene050004 | PPI |
| MS.gene39217 | MS.gene050004 | PPI |
| MS.gene048106 | MS.gene050004 | PPI |
| MS.gene26154 | MS.gene050004 | PPI |
| MS.gene063633 | MS.gene050004 | PPI |
| MS.gene009525 | MS.gene050004 | PPI |
| MS.gene050004 | MS.gene46499 | PPI |
| MS.gene20848 | MS.gene050004 | PPI |
| MS.gene050004 | MS.gene39214 | PPI |
| MS.gene07276 | MS.gene050004 | PPI |
| MS.gene034636 | MS.gene050004 | PPI |
| MS.gene017358 | MS.gene050004 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050004.t1 | MTR_5g065980 | 97.191 | 178 | 4 | 1 | 1 | 178 | 1 | 177 | 5.20e-126 | 352 |
| MS.gene050004.t1 | MTR_5g065980 | 96.111 | 180 | 4 | 2 | 1 | 178 | 1 | 179 | 5.72e-124 | 347 |
| MS.gene050004.t1 | MTR_5g065980 | 97.959 | 147 | 2 | 1 | 1 | 147 | 1 | 146 | 3.60e-101 | 290 |
| MS.gene050004.t1 | MTR_1g083950 | 36.875 | 160 | 86 | 4 | 10 | 169 | 11 | 155 | 3.93e-30 | 108 |
| MS.gene050004.t1 | MTR_1g054765 | 36.095 | 169 | 94 | 6 | 10 | 169 | 5 | 168 | 4.19e-30 | 108 |
| MS.gene050004.t1 | MTR_1g054750 | 34.375 | 160 | 103 | 1 | 10 | 169 | 24 | 181 | 1.33e-29 | 107 |
| MS.gene050004.t1 | MTR_1g087200 | 34.969 | 163 | 89 | 5 | 10 | 169 | 8 | 156 | 6.01e-26 | 97.4 |
| MS.gene050004.t1 | MTR_1g088640 | 33.136 | 169 | 96 | 4 | 2 | 169 | 6 | 158 | 2.66e-23 | 90.9 |
| MS.gene050004.t1 | MTR_1g088640 | 31.953 | 169 | 101 | 3 | 2 | 169 | 6 | 161 | 1.14e-22 | 89.4 |
| MS.gene050004.t1 | MTR_7g108830 | 36.257 | 171 | 92 | 5 | 1 | 169 | 1 | 156 | 4.67e-21 | 85.1 |
| MS.gene050004.t1 | MTR_8g058620 | 36.257 | 171 | 92 | 5 | 1 | 169 | 1 | 156 | 4.67e-21 | 85.1 |
| MS.gene050004.t1 | MTR_7g065770 | 31.176 | 170 | 103 | 4 | 1 | 169 | 1 | 157 | 1.42e-19 | 81.3 |
| MS.gene050004.t1 | MTR_4g019800 | 34.969 | 163 | 87 | 5 | 12 | 169 | 9 | 157 | 2.45e-19 | 80.5 |
| MS.gene050004.t1 | MTR_5g077130 | 34.940 | 166 | 92 | 4 | 9 | 170 | 6 | 159 | 3.42e-18 | 77.8 |
| MS.gene050004.t1 | MTR_5g077130 | 34.940 | 166 | 91 | 4 | 9 | 170 | 6 | 158 | 3.88e-18 | 77.4 |
| MS.gene050004.t1 | MTR_2g089350 | 34.574 | 188 | 90 | 10 | 4 | 177 | 21 | 189 | 3.44e-17 | 76.3 |
| MS.gene050004.t1 | MTR_4g064933 | 35.583 | 163 | 86 | 7 | 12 | 169 | 9 | 157 | 1.03e-16 | 73.6 |
| MS.gene050004.t1 | MTR_6g006190 | 28.462 | 130 | 85 | 2 | 40 | 169 | 41 | 162 | 5.74e-15 | 69.3 |
| MS.gene050004.t1 | MTR_6g006190 | 37.333 | 75 | 47 | 0 | 95 | 169 | 64 | 138 | 2.10e-14 | 67.4 |
| MS.gene050004.t1 | MTR_1g088620 | 50.000 | 64 | 32 | 0 | 106 | 169 | 217 | 280 | 3.38e-14 | 68.9 |
| MS.gene050004.t1 | MTR_2g034200 | 43.396 | 53 | 30 | 0 | 117 | 169 | 105 | 157 | 8.76e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050004.t1 | AT1G09740 | 66.279 | 172 | 53 | 1 | 1 | 172 | 1 | 167 | 6.46e-78 | 230 |
| MS.gene050004.t1 | AT1G09740 | 66.279 | 172 | 53 | 1 | 1 | 172 | 1 | 167 | 6.46e-78 | 230 |
| MS.gene050004.t1 | AT3G11930 | 37.427 | 171 | 97 | 3 | 10 | 176 | 35 | 199 | 3.49e-34 | 119 |
| MS.gene050004.t1 | AT3G11930 | 36.646 | 161 | 99 | 2 | 10 | 169 | 35 | 193 | 4.12e-34 | 119 |
| MS.gene050004.t1 | AT3G58450 | 39.752 | 161 | 85 | 4 | 10 | 169 | 32 | 181 | 8.10e-34 | 119 |
| MS.gene050004.t1 | AT3G11930 | 36.145 | 166 | 94 | 3 | 10 | 169 | 35 | 194 | 2.38e-33 | 117 |
| MS.gene050004.t1 | AT3G58450 | 37.126 | 167 | 88 | 3 | 10 | 169 | 32 | 188 | 2.15e-32 | 115 |
| MS.gene050004.t1 | AT3G62550 | 37.576 | 165 | 85 | 5 | 10 | 171 | 9 | 158 | 1.41e-28 | 104 |
| MS.gene050004.t1 | AT3G11930 | 31.551 | 187 | 99 | 3 | 10 | 169 | 35 | 219 | 1.97e-28 | 105 |
| MS.gene050004.t1 | AT2G47710 | 34.118 | 170 | 97 | 4 | 1 | 169 | 1 | 156 | 2.98e-22 | 88.2 |
| MS.gene050004.t1 | AT1G68300 | 34.884 | 172 | 92 | 5 | 3 | 171 | 5 | 159 | 2.05e-21 | 85.9 |
| MS.gene050004.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene050004.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene050004.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene050004.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene050004.t1 | AT3G53990 | 30.058 | 173 | 101 | 4 | 1 | 169 | 1 | 157 | 7.51e-17 | 73.9 |
| MS.gene050004.t1 | AT5G14680 | 29.333 | 150 | 92 | 4 | 20 | 169 | 27 | 162 | 3.61e-16 | 72.4 |
| MS.gene050004.t1 | AT3G03270 | 32.143 | 168 | 101 | 3 | 5 | 170 | 2 | 158 | 3.62e-16 | 72.0 |
| MS.gene050004.t1 | AT3G01520 | 29.054 | 148 | 91 | 4 | 22 | 169 | 29 | 162 | 2.18e-15 | 70.5 |
| MS.gene050004.t1 | AT3G17020 | 29.944 | 177 | 101 | 4 | 1 | 170 | 1 | 161 | 1.55e-14 | 68.2 |
Find 56 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAAGGACGGCGTTAATA+AGG | 0.229276 | 5.1:-51157767 | MS.gene050004:CDS |
| TACTACTACACCGAGGTTTC+CGG | 0.232423 | 5.1:+51159404 | None:intergenic |
| TAGAATCAGTAATACGTTTC+TGG | 0.237367 | 5.1:+51159061 | None:intergenic |
| GTGATGGGGTCTCGGGCTTT+TGG | 0.264365 | 5.1:-51158370 | MS.gene050004:CDS |
| ATGTGCTTGTGATGGGGTCT+CGG | 0.306029 | 5.1:-51158378 | MS.gene050004:CDS |
| GTTTCACAAATCTTCTCCTT+TGG | 0.322485 | 5.1:+51158421 | None:intergenic |
| TTTCCTTTGATGATAATAAC+TGG | 0.323710 | 5.1:+51157784 | None:intergenic |
| TGAACTAAAGCTTACATTGT+AGG | 0.338700 | 5.1:+51159008 | None:intergenic |
| AATCCCGGTTCTATCCCTTT+CGG | 0.401302 | 5.1:-51159228 | MS.gene050004:CDS |
| AGAGCATGAACGCTCTCCGC+TGG | 0.407849 | 5.1:-51159359 | MS.gene050004:CDS |
| CATGCTGATGTGCTTGTGAT+GGG | 0.429573 | 5.1:-51158385 | MS.gene050004:CDS |
| GGAAAGGACGGCGTTAATAA+GGG | 0.452183 | 5.1:-51157766 | MS.gene050004:CDS |
| GTCAGGACTCATGTTGTTGT+TGG | 0.460740 | 5.1:-51158448 | MS.gene050004:CDS |
| GCATGCTGATGTGCTTGTGA+TGG | 0.486669 | 5.1:-51158386 | MS.gene050004:CDS |
| GAAGATTTGTGAAACTGTAC+AGG | 0.486923 | 5.1:-51158413 | MS.gene050004:CDS |
| AGACATACCATGTCGGAATC+CGG | 0.487189 | 5.1:-51159423 | None:intergenic |
| ACCAGCGTCGGTGGAATCAT+CGG | 0.487232 | 5.1:+51159302 | None:intergenic |
| TTTGGTTGCAGAATGTTCCT+TGG | 0.500716 | 5.1:-51157844 | MS.gene050004:intron |
| TGTGCTTGTGATGGGGTCTC+GGG | 0.501916 | 5.1:-51158377 | MS.gene050004:CDS |
| TCCACCGAAAGGGATAGAAC+CGG | 0.504814 | 5.1:+51159224 | None:intergenic |
| CCAGCGTCGGTGGAATCATC+GGG | 0.522396 | 5.1:+51159303 | None:intergenic |
| CTGAACTGGGTCCACCGAAA+GGG | 0.532276 | 5.1:+51159214 | None:intergenic |
| AACTGGACACTCAGAATGGT+GGG | 0.536495 | 5.1:+51157801 | None:intergenic |
| TTAAGACCGGTGGCGATGGA+CGG | 0.538192 | 5.1:+51159249 | None:intergenic |
| ATCGCCACCGGTCTTAATCC+CGG | 0.539602 | 5.1:-51159243 | MS.gene050004:CDS |
| GGGATTAAGACCGGTGGCGA+TGG | 0.547850 | 5.1:+51159245 | None:intergenic |
| CCCGGTTCTATCCCTTTCGG+TGG | 0.549465 | 5.1:-51159225 | MS.gene050004:CDS |
| ATCTATGACAGACTAAGGTC+AGG | 0.551554 | 5.1:-51158465 | MS.gene050004:intron |
| GAGCATGAACGCTCTCCGCT+GGG | 0.551654 | 5.1:-51159358 | MS.gene050004:CDS |
| TGTCCAGTTATTATCATCAA+AGG | 0.552479 | 5.1:-51157787 | MS.gene050004:CDS |
| AATCATCGGGTGTAGGTGAT+CGG | 0.553013 | 5.1:+51159316 | None:intergenic |
| GATGAAAGAACCAGCGTCGG+TGG | 0.557380 | 5.1:+51159293 | None:intergenic |
| TCACCGCCGTCCATCGCCAC+CGG | 0.557458 | 5.1:-51159255 | MS.gene050004:CDS |
| TGTTGTTGTTGGCGATCCAA+AGG | 0.567254 | 5.1:-51158437 | MS.gene050004:CDS |
| TCAATTGCTGCAGCAAACGC+AGG | 0.577437 | 5.1:+51159090 | None:intergenic |
| CCACCGAAAGGGATAGAACC+GGG | 0.588722 | 5.1:+51159225 | None:intergenic |
| AGTTATTATCATCAAAGGAA+AGG | 0.590261 | 5.1:-51157782 | MS.gene050004:CDS |
| GATAGAACCGGGATTAAGAC+CGG | 0.594933 | 5.1:+51159236 | None:intergenic |
| ACTGAACTGGGTCCACCGAA+AGG | 0.597786 | 5.1:+51159213 | None:intergenic |
| ACTAAAGCTTACATTGTAGG+TGG | 0.603028 | 5.1:+51159011 | None:intergenic |
| TAACTGGACACTCAGAATGG+TGG | 0.604105 | 5.1:+51157800 | None:intergenic |
| TCGGTGGAATCATCGGGTGT+AGG | 0.604826 | 5.1:+51159309 | None:intergenic |
| ATTATCATCAAAGGAAAGGA+CGG | 0.606649 | 5.1:-51157778 | MS.gene050004:CDS |
| GAGGTTTCCGGATTCCGACA+TGG | 0.608495 | 5.1:+51159416 | None:intergenic |
| AGTAGTTGCTAACACTTCCA+AGG | 0.611708 | 5.1:+51157827 | None:intergenic |
| ATGCTGATGTGCTTGTGATG+GGG | 0.612881 | 5.1:-51158384 | MS.gene050004:CDS |
| CCCGATGATTCCACCGACGC+TGG | 0.616687 | 5.1:-51159303 | MS.gene050004:CDS |
| TGGACGGCGGTGATTGAACG+TGG | 0.627670 | 5.1:+51159265 | None:intergenic |
| TAATAACTGGACACTCAGAA+TGG | 0.630290 | 5.1:+51157797 | None:intergenic |
| GTAGTAGTAGTAGCAGTAGA+CGG | 0.636868 | 5.1:-51159390 | MS.gene050004:CDS |
| AGACCGGTGGCGATGGACGG+CGG | 0.638420 | 5.1:+51159252 | None:intergenic |
| ATGTCGGAATCCGGAAACCT+CGG | 0.642461 | 5.1:-51159414 | MS.gene050004:CDS |
| GATGATGAAAGAACCAGCGT+CGG | 0.687428 | 5.1:+51159290 | None:intergenic |
| AGAACCGGGATTAAGACCGG+TGG | 0.724631 | 5.1:+51159239 | None:intergenic |
| ACGGCGGTGATTGAACGTGG+AGG | 0.796542 | 5.1:+51159268 | None:intergenic |
| CTGCTACTACTACTACACCG+AGG | 0.818031 | 5.1:+51159397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTTCATATATAAAATAA+AGG | - | chr5.1:51158253-51158272 | MS.gene050004:intron | 10.0% |
| !!! | CTTATTTGTTTATTGTATTT+TGG | - | chr5.1:51158288-51158307 | MS.gene050004:intron | 15.0% |
| !!! | TTTCATATTTTATTGTTCTA+AGG | - | chr5.1:51159249-51159268 | MS.gene050004:CDS | 15.0% |
| !! | AATTAGTCATTTAGTAGTTT+GGG | - | chr5.1:51158539-51158558 | MS.gene050004:intron | 20.0% |
| !! | CAAAATCAAAATATAAGATG+TGG | - | chr5.1:51159187-51159206 | MS.gene050004:intron | 20.0% |
| !! | TAAATTTCTATGTAACTTTC+TGG | + | chr5.1:51158865-51158884 | None:intergenic | 20.0% |
| !! | TTATTCCATTAACTTAAAAC+TGG | + | chr5.1:51158640-51158659 | None:intergenic | 20.0% |
| !!! | AAATTTTTGTACCTCTTAAT+AGG | + | chr5.1:51158830-51158849 | None:intergenic | 20.0% |
| !!! | AACAATCGACTTAATATTTA+TGG | - | chr5.1:51158889-51158908 | MS.gene050004:intron | 20.0% |
| !!! | AAGAAAGTTTTAACATATTC+CGG | + | chr5.1:51158212-51158231 | None:intergenic | 20.0% |
| !!! | AATTTTTGTACCTCTTAATA+GGG | + | chr5.1:51158829-51158848 | None:intergenic | 20.0% |
| !!! | GTTTTAAGTTAATGGAATAA+TGG | - | chr5.1:51158640-51158659 | MS.gene050004:intron | 20.0% |
| !!! | TGAAACATTGATTTTTCATT+AGG | - | chr5.1:51158047-51158066 | MS.gene050004:intron | 20.0% |
| ! | ACATCATATATATGAACTGA+AGG | + | chr5.1:51158989-51159008 | None:intergenic | 25.0% |
| ! | AGTTATTATCATCAAAGGAA+AGG | - | chr5.1:51159391-51159410 | MS.gene050004:CDS | 25.0% |
| ! | ATTAGTCATTTAGTAGTTTG+GGG | - | chr5.1:51158540-51158559 | MS.gene050004:intron | 25.0% |
| ! | GAATTAGTCATTTAGTAGTT+TGG | - | chr5.1:51158538-51158557 | MS.gene050004:intron | 25.0% |
| ! | GTTTAAAGATGGAAACTATA+TGG | - | chr5.1:51159280-51159299 | MS.gene050004:CDS | 25.0% |
| ! | TCAATGTTTCAGTAAAAACA+TGG | + | chr5.1:51158038-51158057 | None:intergenic | 25.0% |
| ! | TGAACTGAAGGATAAAAAAA+TGG | + | chr5.1:51158977-51158996 | None:intergenic | 25.0% |
| ! | TTTGATATTGCGAATAAAAC+TGG | + | chr5.1:51159220-51159239 | None:intergenic | 25.0% |
| !! | CTGAAATCTAAATCTAGTTT+AGG | - | chr5.1:51159120-51159139 | MS.gene050004:intron | 25.0% |
| !! | TTTCCTTTGATGATAATAAC+TGG | + | chr5.1:51159392-51159411 | None:intergenic | 25.0% |
| !!! | TCTATTTTTGATCATGCTTT+GGG | - | chr5.1:51158131-51158150 | MS.gene050004:intron | 25.0% |
| !!! | TTCTATTTTTGATCATGCTT+TGG | - | chr5.1:51158130-51158149 | MS.gene050004:intron | 25.0% |
| AAGAAAATGATGTACTGAAC+TGG | + | chr5.1:51157976-51157995 | None:intergenic | 30.0% | |
| AGAAAATGATGTACTGAACT+GGG | + | chr5.1:51157975-51157994 | None:intergenic | 30.0% | |
| AGTCAATTGCAAATCAACTA+CGG | + | chr5.1:51158681-51158700 | None:intergenic | 30.0% | |
| ATTATCATCAAAGGAAAGGA+CGG | - | chr5.1:51159395-51159414 | MS.gene050004:CDS | 30.0% | |
| TAGAATCAGTAATACGTTTC+TGG | + | chr5.1:51158115-51158134 | None:intergenic | 30.0% | |
| TCTTTATCTATGACAGACTA+AGG | - | chr5.1:51158703-51158722 | MS.gene050004:intron | 30.0% | |
| TGAACTAAAGCTTACATTGT+AGG | + | chr5.1:51158168-51158187 | None:intergenic | 30.0% | |
| TGTCCAGTTATTATCATCAA+AGG | - | chr5.1:51159386-51159405 | MS.gene050004:CDS | 30.0% | |
| TTAGTCATTTAGTAGTTTGG+GGG | - | chr5.1:51158541-51158560 | MS.gene050004:intron | 30.0% | |
| TTGCGAATAAAACTGGAAAT+CGG | + | chr5.1:51159213-51159232 | None:intergenic | 30.0% | |
| ! | AAATTTTCCATTTTCTTCCC+TGG | + | chr5.1:51159046-51159065 | None:intergenic | 30.0% |
| ! | AGGAATCTGAAGTTTAAAGA+TGG | - | chr5.1:51159269-51159288 | MS.gene050004:CDS | 30.0% |
| !! | AAAATTCAAAGCATTGTGAG+AGG | + | chr5.1:51159311-51159330 | None:intergenic | 30.0% |
| !! | CTCACAATGCTTTGAATTTT+TGG | - | chr5.1:51159311-51159330 | MS.gene050004:CDS | 30.0% |
| !! | TGGTATTTTTGAACCTGATT+AGG | - | chr5.1:51158909-51158928 | MS.gene050004:intron | 30.0% |
| !!! | AGTCTCCAGTTTTAAGTTAA+TGG | - | chr5.1:51158632-51158651 | MS.gene050004:intron | 30.0% |
| !!! | ATGCCATTTTGTGATATGTA+AGG | + | chr5.1:51158936-51158955 | None:intergenic | 30.0% |
| ACTAAAGCTTACATTGTAGG+TGG | + | chr5.1:51158165-51158184 | None:intergenic | 35.0% | |
| AGACTTGCACAAAAAAGTGA+AGG | + | chr5.1:51158617-51158636 | None:intergenic | 35.0% | |
| AGTAATACCAGGGAAGAAAA+TGG | - | chr5.1:51159036-51159055 | MS.gene050004:CDS | 35.0% | |
| GAAGATTTGTGAAACTGTAC+AGG | - | chr5.1:51158760-51158779 | MS.gene050004:intron | 35.0% | |
| GCAATTCTAACCTTGTAAGT+TGG | - | chr5.1:51159142-51159161 | MS.gene050004:intron | 35.0% | |
| GGACCTTACATATCACAAAA+TGG | - | chr5.1:51158930-51158949 | MS.gene050004:intron | 35.0% | |
| GGATAAAAAAATGGTCCAGA+TGG | + | chr5.1:51158968-51158987 | None:intergenic | 35.0% | |
| GTTTCACAAATCTTCTCCTT+TGG | + | chr5.1:51158755-51158774 | None:intergenic | 35.0% | |
| TAATAACTGGACACTCAGAA+TGG | + | chr5.1:51159379-51159398 | None:intergenic | 35.0% | |
| TAGTGACAGTGTGTGAAAAT+TGG | - | chr5.1:51158363-51158382 | MS.gene050004:CDS | 35.0% | |
| TGATATGTAAGGTCCTAATC+AGG | + | chr5.1:51158925-51158944 | None:intergenic | 35.0% | |
| TGCACAAAAAAGTGAAGGTA+GGG | + | chr5.1:51158612-51158631 | None:intergenic | 35.0% | |
| TGGCATGATAATAAACCATC+TGG | - | chr5.1:51158950-51158969 | MS.gene050004:intron | 35.0% | |
| TTCTTCCCTGGTATTACTTT+AGG | + | chr5.1:51159034-51159053 | None:intergenic | 35.0% | |
| TTGCACAAAAAAGTGAAGGT+AGG | + | chr5.1:51158613-51158632 | None:intergenic | 35.0% | |
| ! | TTTTGAGCGATAAGAGTTGT+GGG | - | chr5.1:51158577-51158596 | MS.gene050004:intron | 35.0% |
| !! | TTGTTTTTCCTTAGTGTTGC+CGG | - | chr5.1:51158190-51158209 | MS.gene050004:intron | 35.0% |
| !!! | AACCTTGTAAGTTGGTTTTG+TGG | - | chr5.1:51159150-51159169 | MS.gene050004:intron | 35.0% |
| AACATATTCCGGCAACACTA+AGG | + | chr5.1:51158201-51158220 | None:intergenic | 40.0% | |
| ACTGGTCCTAAAGTAATACC+AGG | - | chr5.1:51159025-51159044 | MS.gene050004:CDS | 40.0% | |
| AGAAAACCCGAGTCTATCAT+TGG | - | chr5.1:51159083-51159102 | MS.gene050004:CDS | 40.0% | |
| AGTAGTTGCTAACACTTCCA+AGG | + | chr5.1:51159349-51159368 | None:intergenic | 40.0% | |
| ATCTATGACAGACTAAGGTC+AGG | - | chr5.1:51158708-51158727 | MS.gene050004:intron | 40.0% | |
| CACCACAAAACCAACTTACA+AGG | + | chr5.1:51159155-51159174 | None:intergenic | 40.0% | |
| CTGGTCCTAAAGTAATACCA+GGG | - | chr5.1:51159026-51159045 | MS.gene050004:CDS | 40.0% | |
| GTAGTAGTAGTAGCAGTAGA+CGG | - | chr5.1:51157783-51157802 | MS.gene050004:CDS | 40.0% | |
| TCTCAAGCCAATGATAGACT+CGG | + | chr5.1:51159093-51159112 | None:intergenic | 40.0% | |
| TTTGGTTGCAGAATGTTCCT+TGG | - | chr5.1:51159329-51159348 | MS.gene050004:CDS | 40.0% | |
| !! | GTTTTGAGCGATAAGAGTTG+TGG | - | chr5.1:51158576-51158595 | MS.gene050004:intron | 40.0% |
| AACTGGACACTCAGAATGGT+GGG | + | chr5.1:51159375-51159394 | None:intergenic | 45.0% | |
| AATCATCGGGTGTAGGTGAT+CGG | + | chr5.1:51157860-51157879 | None:intergenic | 45.0% | |
| AATCCCGGTTCTATCCCTTT+CGG | - | chr5.1:51157945-51157964 | MS.gene050004:intron | 45.0% | |
| AGGAAAGGACGGCGTTAATA+AGG | - | chr5.1:51159406-51159425 | MS.gene050004:CDS | 45.0% | |
| ATGCTGATGTGCTTGTGATG+GGG | - | chr5.1:51158789-51158808 | MS.gene050004:intron | 45.0% | |
| CATGCTGATGTGCTTGTGAT+GGG | - | chr5.1:51158788-51158807 | MS.gene050004:intron | 45.0% | |
| CTCAAGCCAATGATAGACTC+GGG | + | chr5.1:51159092-51159111 | None:intergenic | 45.0% | |
| GATAGAACCGGGATTAAGAC+CGG | + | chr5.1:51157940-51157959 | None:intergenic | 45.0% | |
| GATGATGAAAGAACCAGCGT+CGG | + | chr5.1:51157886-51157905 | None:intergenic | 45.0% | |
| GGAAAGGACGGCGTTAATAA+GGG | - | chr5.1:51159407-51159426 | MS.gene050004:CDS | 45.0% | |
| GTCAGGACTCATGTTGTTGT+TGG | - | chr5.1:51158725-51158744 | MS.gene050004:intron | 45.0% | |
| GTCATTTAGTAGTTTGGGGG+AGG | - | chr5.1:51158544-51158563 | MS.gene050004:intron | 45.0% | |
| GTTGACAACTAGCTAGACAC+TGG | - | chr5.1:51159007-51159026 | MS.gene050004:intron | 45.0% | |
| TAACTGGACACTCAGAATGG+TGG | + | chr5.1:51159376-51159395 | None:intergenic | 45.0% | |
| TACTACTACACCGAGGTTTC+CGG | + | chr5.1:51157772-51157791 | None:intergenic | 45.0% | |
| ! | TGAGATTTTCTAACGCCCAG+CGG | + | chr5.1:51157833-51157852 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGCGATCCAA+AGG | - | chr5.1:51158736-51158755 | MS.gene050004:intron | 45.0% |
| ATGTCGGAATCCGGAAACCT+CGG | - | chr5.1:51157759-51157778 | MS.gene050004:CDS | 50.0% | |
| CTGCTACTACTACTACACCG+AGG | + | chr5.1:51157779-51157798 | None:intergenic | 50.0% | |
| GCATGCTGATGTGCTTGTGA+TGG | - | chr5.1:51158787-51158806 | MS.gene050004:intron | 50.0% | |
| TCAATTGCTGCAGCAAACGC+AGG | + | chr5.1:51158086-51158105 | None:intergenic | 50.0% | |
| TCCACCGAAAGGGATAGAAC+CGG | + | chr5.1:51157952-51157971 | None:intergenic | 50.0% | |
| ! | ATGTGCTTGTGATGGGGTCT+CGG | - | chr5.1:51158795-51158814 | MS.gene050004:intron | 50.0% |
| ! | GGGCTTTTGGCCCTATTAAG+AGG | - | chr5.1:51158816-51158835 | MS.gene050004:intron | 50.0% |
| ACTGAACTGGGTCCACCGAA+AGG | + | chr5.1:51157963-51157982 | None:intergenic | 55.0% | |
| AGAACCGGGATTAAGACCGG+TGG | + | chr5.1:51157937-51157956 | None:intergenic | 55.0% | |
| ATCGCCACCGGTCTTAATCC+CGG | - | chr5.1:51157930-51157949 | MS.gene050004:intron | 55.0% | |
| CCACCGAAAGGGATAGAACC+GGG | + | chr5.1:51157951-51157970 | None:intergenic | 55.0% | |
| CTGAACTGGGTCCACCGAAA+GGG | + | chr5.1:51157962-51157981 | None:intergenic | 55.0% | |
| TCGGTGGAATCATCGGGTGT+AGG | + | chr5.1:51157867-51157886 | None:intergenic | 55.0% | |
| TTAAGACCGGTGGCGATGGA+CGG | + | chr5.1:51157927-51157946 | None:intergenic | 55.0% | |
| ! | GATGAAAGAACCAGCGTCGG+TGG | + | chr5.1:51157883-51157902 | None:intergenic | 55.0% |
| ! | TGTGCTTGTGATGGGGTCTC+GGG | - | chr5.1:51158796-51158815 | MS.gene050004:intron | 55.0% |
| !! | ACCAGCGTCGGTGGAATCAT+CGG | + | chr5.1:51157874-51157893 | None:intergenic | 55.0% |
| ACGGCGGTGATTGAACGTGG+AGG | + | chr5.1:51157908-51157927 | None:intergenic | 60.0% | |
| AGAGCATGAACGCTCTCCGC+TGG | - | chr5.1:51157814-51157833 | MS.gene050004:CDS | 60.0% | |
| CCCGGTTCTATCCCTTTCGG+TGG | - | chr5.1:51157948-51157967 | MS.gene050004:intron | 60.0% | |
| GAGCATGAACGCTCTCCGCT+GGG | - | chr5.1:51157815-51157834 | MS.gene050004:CDS | 60.0% | |
| GGGATTAAGACCGGTGGCGA+TGG | + | chr5.1:51157931-51157950 | None:intergenic | 60.0% | |
| TGGACGGCGGTGATTGAACG+TGG | + | chr5.1:51157911-51157930 | None:intergenic | 60.0% | |
| !! | CCAGCGTCGGTGGAATCATC+GGG | + | chr5.1:51157873-51157892 | None:intergenic | 60.0% |
| !! | GTGATGGGGTCTCGGGCTTT+TGG | - | chr5.1:51158803-51158822 | MS.gene050004:intron | 60.0% |
| CCCGATGATTCCACCGACGC+TGG | - | chr5.1:51157870-51157889 | MS.gene050004:intron | 65.0% | |
| AGACCGGTGGCGATGGACGG+CGG | + | chr5.1:51157924-51157943 | None:intergenic | 70.0% | |
| TCACCGCCGTCCATCGCCAC+CGG | - | chr5.1:51157918-51157937 | MS.gene050004:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 51157759 | 51159436 | 51157759 | ID=MS.gene050004 |
| chr5.1 | mRNA | 51157759 | 51159436 | 51157759 | ID=MS.gene050004.t1;Parent=MS.gene050004 |
| chr5.1 | exon | 51159220 | 51159436 | 51159220 | ID=MS.gene050004.t1.exon1;Parent=MS.gene050004.t1 |
| chr5.1 | CDS | 51159220 | 51159436 | 51159220 | ID=cds.MS.gene050004.t1;Parent=MS.gene050004.t1 |
| chr5.1 | exon | 51159023 | 51159126 | 51159023 | ID=MS.gene050004.t1.exon2;Parent=MS.gene050004.t1 |
| chr5.1 | CDS | 51159023 | 51159126 | 51159023 | ID=cds.MS.gene050004.t1;Parent=MS.gene050004.t1 |
| chr5.1 | exon | 51158358 | 51158476 | 51158358 | ID=MS.gene050004.t1.exon3;Parent=MS.gene050004.t1 |
| chr5.1 | CDS | 51158358 | 51158476 | 51158358 | ID=cds.MS.gene050004.t1;Parent=MS.gene050004.t1 |
| chr5.1 | exon | 51157759 | 51157855 | 51157759 | ID=MS.gene050004.t1.exon4;Parent=MS.gene050004.t1 |
| chr5.1 | CDS | 51157759 | 51157855 | 51157759 | ID=cds.MS.gene050004.t1;Parent=MS.gene050004.t1 |
| Gene Sequence |
| Protein sequence |
