Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010109.t1 | XP_003615271.1 | 97.2 | 178 | 4 | 1 | 1 | 178 | 1 | 177 | 1.30E-92 | 349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010109.t1 | Q8LGG8 | 29.3 | 147 | 90 | 4 | 23 | 169 | 30 | 162 | 3.7e-11 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010109.t1 | G7KBJ3 | 97.2 | 178 | 4 | 1 | 1 | 178 | 1 | 177 | 9.5e-93 | 349.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39217 | MS.gene010109 | PPI |
| MS.gene048106 | MS.gene010109 | PPI |
| MS.gene26154 | MS.gene010109 | PPI |
| MS.gene20848 | MS.gene010109 | PPI |
| MS.gene063633 | MS.gene010109 | PPI |
| MS.gene009525 | MS.gene010109 | PPI |
| MS.gene034636 | MS.gene010109 | PPI |
| MS.gene92557 | MS.gene010109 | PPI |
| MS.gene39213 | MS.gene010109 | PPI |
| MS.gene010109 | MS.gene46499 | PPI |
| MS.gene07276 | MS.gene010109 | PPI |
| MS.gene005525 | MS.gene010109 | PPI |
| MS.gene010109 | MS.gene39214 | PPI |
| MS.gene037687 | MS.gene010109 | PPI |
| MS.gene017358 | MS.gene010109 | PPI |
| MS.gene034635 | MS.gene010109 | PPI |
| MS.gene20798 | MS.gene010109 | PPI |
| MS.gene73234 | MS.gene010109 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010109.t1 | MTR_5g065980 | 97.191 | 178 | 4 | 1 | 1 | 178 | 1 | 177 | 5.20e-126 | 352 |
| MS.gene010109.t1 | MTR_5g065980 | 96.111 | 180 | 4 | 2 | 1 | 178 | 1 | 179 | 5.72e-124 | 347 |
| MS.gene010109.t1 | MTR_5g065980 | 97.959 | 147 | 2 | 1 | 1 | 147 | 1 | 146 | 3.60e-101 | 290 |
| MS.gene010109.t1 | MTR_1g083950 | 36.875 | 160 | 86 | 4 | 10 | 169 | 11 | 155 | 3.93e-30 | 108 |
| MS.gene010109.t1 | MTR_1g054765 | 36.095 | 169 | 94 | 6 | 10 | 169 | 5 | 168 | 4.19e-30 | 108 |
| MS.gene010109.t1 | MTR_1g054750 | 34.375 | 160 | 103 | 1 | 10 | 169 | 24 | 181 | 1.33e-29 | 107 |
| MS.gene010109.t1 | MTR_1g087200 | 34.969 | 163 | 89 | 5 | 10 | 169 | 8 | 156 | 6.01e-26 | 97.4 |
| MS.gene010109.t1 | MTR_1g088640 | 33.136 | 169 | 96 | 4 | 2 | 169 | 6 | 158 | 2.66e-23 | 90.9 |
| MS.gene010109.t1 | MTR_1g088640 | 31.953 | 169 | 101 | 3 | 2 | 169 | 6 | 161 | 1.14e-22 | 89.4 |
| MS.gene010109.t1 | MTR_7g108830 | 36.257 | 171 | 92 | 5 | 1 | 169 | 1 | 156 | 4.67e-21 | 85.1 |
| MS.gene010109.t1 | MTR_8g058620 | 36.257 | 171 | 92 | 5 | 1 | 169 | 1 | 156 | 4.67e-21 | 85.1 |
| MS.gene010109.t1 | MTR_7g065770 | 31.176 | 170 | 103 | 4 | 1 | 169 | 1 | 157 | 1.42e-19 | 81.3 |
| MS.gene010109.t1 | MTR_4g019800 | 34.969 | 163 | 87 | 5 | 12 | 169 | 9 | 157 | 2.45e-19 | 80.5 |
| MS.gene010109.t1 | MTR_5g077130 | 34.940 | 166 | 92 | 4 | 9 | 170 | 6 | 159 | 3.42e-18 | 77.8 |
| MS.gene010109.t1 | MTR_5g077130 | 34.940 | 166 | 91 | 4 | 9 | 170 | 6 | 158 | 3.88e-18 | 77.4 |
| MS.gene010109.t1 | MTR_2g089350 | 34.574 | 188 | 90 | 10 | 4 | 177 | 21 | 189 | 3.44e-17 | 76.3 |
| MS.gene010109.t1 | MTR_4g064933 | 35.583 | 163 | 86 | 7 | 12 | 169 | 9 | 157 | 1.03e-16 | 73.6 |
| MS.gene010109.t1 | MTR_6g006190 | 28.462 | 130 | 85 | 2 | 40 | 169 | 41 | 162 | 5.74e-15 | 69.3 |
| MS.gene010109.t1 | MTR_6g006190 | 37.333 | 75 | 47 | 0 | 95 | 169 | 64 | 138 | 2.10e-14 | 67.4 |
| MS.gene010109.t1 | MTR_1g088620 | 50.000 | 64 | 32 | 0 | 106 | 169 | 217 | 280 | 3.38e-14 | 68.9 |
| MS.gene010109.t1 | MTR_2g034200 | 43.396 | 53 | 30 | 0 | 117 | 169 | 105 | 157 | 8.76e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010109.t1 | AT1G09740 | 66.279 | 172 | 53 | 1 | 1 | 172 | 1 | 167 | 6.46e-78 | 230 |
| MS.gene010109.t1 | AT1G09740 | 66.279 | 172 | 53 | 1 | 1 | 172 | 1 | 167 | 6.46e-78 | 230 |
| MS.gene010109.t1 | AT3G11930 | 37.427 | 171 | 97 | 3 | 10 | 176 | 35 | 199 | 3.49e-34 | 119 |
| MS.gene010109.t1 | AT3G11930 | 36.646 | 161 | 99 | 2 | 10 | 169 | 35 | 193 | 4.12e-34 | 119 |
| MS.gene010109.t1 | AT3G58450 | 39.752 | 161 | 85 | 4 | 10 | 169 | 32 | 181 | 8.10e-34 | 119 |
| MS.gene010109.t1 | AT3G11930 | 36.145 | 166 | 94 | 3 | 10 | 169 | 35 | 194 | 2.38e-33 | 117 |
| MS.gene010109.t1 | AT3G58450 | 37.126 | 167 | 88 | 3 | 10 | 169 | 32 | 188 | 2.15e-32 | 115 |
| MS.gene010109.t1 | AT3G62550 | 37.576 | 165 | 85 | 5 | 10 | 171 | 9 | 158 | 1.41e-28 | 104 |
| MS.gene010109.t1 | AT3G11930 | 31.551 | 187 | 99 | 3 | 10 | 169 | 35 | 219 | 1.97e-28 | 105 |
| MS.gene010109.t1 | AT2G47710 | 34.118 | 170 | 97 | 4 | 1 | 169 | 1 | 156 | 2.98e-22 | 88.2 |
| MS.gene010109.t1 | AT1G68300 | 34.884 | 172 | 92 | 5 | 3 | 171 | 5 | 159 | 2.05e-21 | 85.9 |
| MS.gene010109.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene010109.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene010109.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene010109.t1 | AT1G11360 | 32.222 | 180 | 89 | 9 | 12 | 176 | 42 | 203 | 5.03e-17 | 76.3 |
| MS.gene010109.t1 | AT3G53990 | 30.058 | 173 | 101 | 4 | 1 | 169 | 1 | 157 | 7.51e-17 | 73.9 |
| MS.gene010109.t1 | AT5G14680 | 29.333 | 150 | 92 | 4 | 20 | 169 | 27 | 162 | 3.61e-16 | 72.4 |
| MS.gene010109.t1 | AT3G03270 | 32.143 | 168 | 101 | 3 | 5 | 170 | 2 | 158 | 3.62e-16 | 72.0 |
| MS.gene010109.t1 | AT3G01520 | 29.054 | 148 | 91 | 4 | 22 | 169 | 29 | 162 | 2.18e-15 | 70.5 |
| MS.gene010109.t1 | AT3G17020 | 29.944 | 177 | 101 | 4 | 1 | 170 | 1 | 161 | 1.55e-14 | 68.2 |
Find 56 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAAGGACGGCGTTAATA+AGG | 0.229276 | 5.2:-55992868 | MS.gene010109:CDS |
| TAGAATCAGTAATACGTTTC+TGG | 0.237367 | 5.2:+55994196 | None:intergenic |
| GTGATGGGGTCTCGGGCTTT+TGG | 0.264365 | 5.2:-55993471 | MS.gene010109:CDS |
| ATGTGCTTGTGATGGGGTCT+CGG | 0.306029 | 5.2:-55993479 | MS.gene010109:CDS |
| AACTACTACACCGAGGTTTC+CGG | 0.308170 | 5.2:+55994539 | None:intergenic |
| GTTTCACAAATCTTCTCCTT+TGG | 0.322485 | 5.2:+55993522 | None:intergenic |
| TTTCCTTTGATGATAATAAC+TGG | 0.323710 | 5.2:+55992885 | None:intergenic |
| TGAACTAAAGCTTACATTGT+AGG | 0.338700 | 5.2:+55994143 | None:intergenic |
| AGAGCATGAACGCTCTCCGC+TGG | 0.407849 | 5.2:-55994494 | MS.gene010109:CDS |
| AATCCCGGTTCCATCCCTTT+CGG | 0.415050 | 5.2:-55994363 | MS.gene010109:CDS |
| CATGCTGATGTGCTTGTGAT+GGG | 0.429573 | 5.2:-55993486 | MS.gene010109:CDS |
| TCCACCGAAAGGGATGGAAC+CGG | 0.446597 | 5.2:+55994359 | None:intergenic |
| GGAAAGGACGGCGTTAATAA+GGG | 0.452183 | 5.2:-55992867 | MS.gene010109:CDS |
| AGACATACGATGTCGGAATC+CGG | 0.454761 | 5.2:-55994558 | None:intergenic |
| GTCAGGACTCATGTTGTTGT+TGG | 0.460740 | 5.2:-55993549 | MS.gene010109:CDS |
| ACCAGCGTCGGTGGAATCAT+CGG | 0.486361 | 5.2:+55994437 | None:intergenic |
| GCATGCTGATGTGCTTGTGA+TGG | 0.486669 | 5.2:-55993487 | MS.gene010109:CDS |
| GAAGATTTGTGAAACTGTAC+AGG | 0.486923 | 5.2:-55993514 | MS.gene010109:CDS |
| CCAGCGTCGGTGGAATCATC+GGG | 0.496571 | 5.2:+55994438 | None:intergenic |
| TTTGGTTGCAGAATGTTCCT+TGG | 0.500716 | 5.2:-55992945 | MS.gene010109:intron |
| TGTGCTTGTGATGGGGTCTC+GGG | 0.501916 | 5.2:-55993478 | MS.gene010109:CDS |
| CCACCGAAAGGGATGGAACC+GGG | 0.506848 | 5.2:+55994360 | None:intergenic |
| AATCATCGGGCGTAGGTGAT+CGG | 0.528099 | 5.2:+55994451 | None:intergenic |
| CTGAACTGGGTCCACCGAAA+GGG | 0.532276 | 5.2:+55994349 | None:intergenic |
| AACTGGACACTCAGAATGGT+GGG | 0.536495 | 5.2:+55992902 | None:intergenic |
| TTAAGACCGGTGGCGATGGA+CGG | 0.538192 | 5.2:+55994384 | None:intergenic |
| ATCGCCACCGGTCTTAATCC+CGG | 0.539602 | 5.2:-55994378 | MS.gene010109:CDS |
| GGGATTAAGACCGGTGGCGA+TGG | 0.547850 | 5.2:+55994380 | None:intergenic |
| ATCTATGACAGACTAAGGTC+AGG | 0.551554 | 5.2:-55993566 | MS.gene010109:intron |
| GAGCATGAACGCTCTCCGCT+GGG | 0.551654 | 5.2:-55994493 | MS.gene010109:CDS |
| CCCGGTTCCATCCCTTTCGG+TGG | 0.551948 | 5.2:-55994360 | MS.gene010109:CDS |
| TGTCCAGTTATTATCATCAA+AGG | 0.552479 | 5.2:-55992888 | MS.gene010109:CDS |
| GATGAAAGAACCAGCGTCGG+TGG | 0.557380 | 5.2:+55994428 | None:intergenic |
| TCACCGCCGTCCATCGCCAC+CGG | 0.557458 | 5.2:-55994390 | MS.gene010109:CDS |
| TGTTGTTGTTGGCGATCCAA+AGG | 0.567254 | 5.2:-55993538 | MS.gene010109:CDS |
| GATGGAACCGGGATTAAGAC+CGG | 0.568580 | 5.2:+55994371 | None:intergenic |
| TCAATTGCTGCAGCAAACGC+AGG | 0.577437 | 5.2:+55994225 | None:intergenic |
| GTAGTAGTTGTAGCAGTAGA+CGG | 0.578646 | 5.2:-55994525 | MS.gene010109:CDS |
| AGTTATTATCATCAAAGGAA+AGG | 0.590261 | 5.2:-55992883 | MS.gene010109:CDS |
| ACTGGGTCCACCGAAAGGGA+TGG | 0.596198 | 5.2:+55994353 | None:intergenic |
| ACTGAACTGGGTCCACCGAA+AGG | 0.597786 | 5.2:+55994348 | None:intergenic |
| ACTAAAGCTTACATTGTAGG+TGG | 0.603028 | 5.2:+55994146 | None:intergenic |
| TAACTGGACACTCAGAATGG+TGG | 0.604105 | 5.2:+55992901 | None:intergenic |
| CCCGATGATTCCACCGACGC+TGG | 0.605057 | 5.2:-55994438 | MS.gene010109:CDS |
| ATTATCATCAAAGGAAAGGA+CGG | 0.606649 | 5.2:-55992879 | MS.gene010109:CDS |
| TCGGTGGAATCATCGGGCGT+AGG | 0.607737 | 5.2:+55994444 | None:intergenic |
| AGTAGTTGCTAACACTTCCA+AGG | 0.611708 | 5.2:+55992928 | None:intergenic |
| ATGCTGATGTGCTTGTGATG+GGG | 0.612881 | 5.2:-55993485 | MS.gene010109:CDS |
| TGGACGGCGGTGATTGAACG+TGG | 0.627670 | 5.2:+55994400 | None:intergenic |
| TAATAACTGGACACTCAGAA+TGG | 0.630290 | 5.2:+55992898 | None:intergenic |
| AGACCGGTGGCGATGGACGG+CGG | 0.638420 | 5.2:+55994387 | None:intergenic |
| ATGTCGGAATCCGGAAACCT+CGG | 0.652430 | 5.2:-55994549 | MS.gene010109:CDS |
| GATGATGAAAGAACCAGCGT+CGG | 0.687428 | 5.2:+55994425 | None:intergenic |
| GGAACCGGGATTAAGACCGG+TGG | 0.712123 | 5.2:+55994374 | None:intergenic |
| ACGGCGGTGATTGAACGTGG+AGG | 0.796542 | 5.2:+55994403 | None:intergenic |
| CTGCTACAACTACTACACCG+AGG | 0.797689 | 5.2:+55994532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTCATATATAAAAATAA+AGG | - | chr5.2:55993355-55993374 | MS.gene010109:intron | 10.0% |
| !!! | CATTTTTTTTTTTTTTTTTG+AGG | - | chr5.2:55993520-55993539 | MS.gene010109:CDS | 10.0% |
| !!! | CTTATTTGTTTATTGTATTT+TGG | - | chr5.2:55993390-55993409 | MS.gene010109:intron | 15.0% |
| !!! | TTTCATATTTTATTGTTCTA+AGG | - | chr5.2:55994384-55994403 | MS.gene010109:CDS | 15.0% |
| !!! | TTTTTTTTTTTTTTGAGGAA+TGG | - | chr5.2:55993525-55993544 | MS.gene010109:CDS | 15.0% |
| !! | AATTAGTCATTTAGTAGTTT+GGG | - | chr5.2:55993674-55993693 | MS.gene010109:intron | 20.0% |
| !! | ACATTATATATATGAACTGA+AGG | + | chr5.2:55994124-55994143 | None:intergenic | 20.0% |
| !! | CAAAATCAAAATATAAGATG+TGG | - | chr5.2:55994322-55994341 | MS.gene010109:intron | 20.0% |
| !! | TAAATTTCTATGTAACTTTC+TGG | + | chr5.2:55994000-55994019 | None:intergenic | 20.0% |
| !! | TTATTCCATTAACTTAAAAC+TGG | + | chr5.2:55993775-55993794 | None:intergenic | 20.0% |
| !!! | AAATTTTTGTACCTCTTAAT+AGG | + | chr5.2:55993965-55993984 | None:intergenic | 20.0% |
| !!! | AACAATCGACTTAATATTTA+TGG | - | chr5.2:55994024-55994043 | MS.gene010109:intron | 20.0% |
| !!! | AAGAAAGTTTTAACATATTC+CGG | + | chr5.2:55993313-55993332 | None:intergenic | 20.0% |
| !!! | AATTTTTGTACCTCTTAATA+GGG | + | chr5.2:55993964-55993983 | None:intergenic | 20.0% |
| !!! | GTTTTAAGTTAATGGAATAA+TGG | - | chr5.2:55993775-55993794 | MS.gene010109:intron | 20.0% |
| !!! | TGAAACATTGATTTTTCATT+AGG | - | chr5.2:55993148-55993167 | MS.gene010109:intron | 20.0% |
| ! | AGTTATTATCATCAAAGGAA+AGG | - | chr5.2:55994526-55994545 | MS.gene010109:CDS | 25.0% |
| ! | ATTAGTCATTTAGTAGTTTG+GGG | - | chr5.2:55993675-55993694 | MS.gene010109:intron | 25.0% |
| ! | GAATTAGTCATTTAGTAGTT+TGG | - | chr5.2:55993673-55993692 | MS.gene010109:intron | 25.0% |
| ! | GTTTAAAGATGGAAACTATA+TGG | - | chr5.2:55994415-55994434 | MS.gene010109:CDS | 25.0% |
| ! | TCAATGTTTCAGTAAAAACA+TGG | + | chr5.2:55993139-55993158 | None:intergenic | 25.0% |
| ! | TGAACTGAAGGATAAAAAAA+TGG | + | chr5.2:55994112-55994131 | None:intergenic | 25.0% |
| ! | TTTGATATTGCGAATAAAAC+TGG | + | chr5.2:55994355-55994374 | None:intergenic | 25.0% |
| !! | CTGAAATCTAAATCTAGTTT+AGG | - | chr5.2:55994255-55994274 | MS.gene010109:intron | 25.0% |
| !! | TTTCCTTTGATGATAATAAC+TGG | + | chr5.2:55994527-55994546 | None:intergenic | 25.0% |
| !!! | TCTATTTTTGATCATGCTTT+GGG | - | chr5.2:55993232-55993251 | MS.gene010109:intron | 25.0% |
| !!! | TTCTATTTTTGATCATGCTT+TGG | - | chr5.2:55993231-55993250 | MS.gene010109:intron | 25.0% |
| AAGAAAATGATGTACTGAAC+TGG | + | chr5.2:55993077-55993096 | None:intergenic | 30.0% | |
| AGAAAATGATGTACTGAACT+GGG | + | chr5.2:55993076-55993095 | None:intergenic | 30.0% | |
| AGTCAATTGCAATTCAACTA+CGG | + | chr5.2:55993816-55993835 | None:intergenic | 30.0% | |
| ATTATCATCAAAGGAAAGGA+CGG | - | chr5.2:55994530-55994549 | MS.gene010109:CDS | 30.0% | |
| TAGAATCAGTAATACGTTTC+TGG | + | chr5.2:55993216-55993235 | None:intergenic | 30.0% | |
| TCTTTATCTATGACAGACTA+AGG | - | chr5.2:55993838-55993857 | MS.gene010109:intron | 30.0% | |
| TGAACTAAAGCTTACATTGT+AGG | + | chr5.2:55993269-55993288 | None:intergenic | 30.0% | |
| TGTCCAGTTATTATCATCAA+AGG | - | chr5.2:55994521-55994540 | MS.gene010109:CDS | 30.0% | |
| TTAGTCATTTAGTAGTTTGG+GGG | - | chr5.2:55993676-55993695 | MS.gene010109:intron | 30.0% | |
| TTGCGAATAAAACTGGAAAT+CGG | + | chr5.2:55994348-55994367 | None:intergenic | 30.0% | |
| ! | AAATTTTCCATTTTCTTCCC+TGG | + | chr5.2:55994181-55994200 | None:intergenic | 30.0% |
| ! | AGGAATCTGAAGTTTAAAGA+TGG | - | chr5.2:55994404-55994423 | MS.gene010109:CDS | 30.0% |
| !! | AAAATTCAAAGCATTGTGAG+AGG | + | chr5.2:55994446-55994465 | None:intergenic | 30.0% |
| !! | CTCACAATGCTTTGAATTTT+TGG | - | chr5.2:55994446-55994465 | MS.gene010109:CDS | 30.0% |
| !! | TGGTATTTTTGAACCTGATT+AGG | - | chr5.2:55994044-55994063 | MS.gene010109:intron | 30.0% |
| !!! | AGTCTCCAGTTTTAAGTTAA+TGG | - | chr5.2:55993767-55993786 | MS.gene010109:intron | 30.0% |
| !!! | ATGCCATTTTGTGATATGTA+AGG | + | chr5.2:55994071-55994090 | None:intergenic | 30.0% |
| ACTAAAGCTTACATTGTAGG+TGG | + | chr5.2:55993266-55993285 | None:intergenic | 35.0% | |
| AGACTTGCACAAAAAAGTGA+AGG | + | chr5.2:55993752-55993771 | None:intergenic | 35.0% | |
| AGTAATACCAGGGAAGAAAA+TGG | - | chr5.2:55994171-55994190 | MS.gene010109:CDS | 35.0% | |
| GAAGATTTGTGAAACTGTAC+AGG | - | chr5.2:55993895-55993914 | MS.gene010109:intron | 35.0% | |
| GCAATTCTAACCTTGTAAGT+TGG | - | chr5.2:55994277-55994296 | MS.gene010109:intron | 35.0% | |
| GGACCTTACATATCACAAAA+TGG | - | chr5.2:55994065-55994084 | MS.gene010109:intron | 35.0% | |
| GGATAAAAAAATGGTCCAGA+TGG | + | chr5.2:55994103-55994122 | None:intergenic | 35.0% | |
| GTTTCACAAATCTTCTCCTT+TGG | + | chr5.2:55993890-55993909 | None:intergenic | 35.0% | |
| TAATAACTGGACACTCAGAA+TGG | + | chr5.2:55994514-55994533 | None:intergenic | 35.0% | |
| TAGTGACAGTGTGTGAAAAT+TGG | - | chr5.2:55993462-55993481 | MS.gene010109:CDS | 35.0% | |
| TGATATGTAAGGTCCTAATC+AGG | + | chr5.2:55994060-55994079 | None:intergenic | 35.0% | |
| TGCACAAAAAAGTGAAGGTA+GGG | + | chr5.2:55993747-55993766 | None:intergenic | 35.0% | |
| TGGCATGATAATAAACCATC+TGG | - | chr5.2:55994085-55994104 | MS.gene010109:intron | 35.0% | |
| TTCTTCCCTGGTATTACTTT+AGG | + | chr5.2:55994169-55994188 | None:intergenic | 35.0% | |
| TTGCACAAAAAAGTGAAGGT+AGG | + | chr5.2:55993748-55993767 | None:intergenic | 35.0% | |
| ! | TTTTGAGCGATAAGAGTTGT+GGG | - | chr5.2:55993712-55993731 | MS.gene010109:intron | 35.0% |
| !! | TTGTTTTTCCTTAGTGTTGC+CGG | - | chr5.2:55993291-55993310 | MS.gene010109:intron | 35.0% |
| !!! | AACCTTGTAAGTTGGTTTTG+TGG | - | chr5.2:55994285-55994304 | MS.gene010109:intron | 35.0% |
| AACATATTCCGGCAACACTA+AGG | + | chr5.2:55993302-55993321 | None:intergenic | 40.0% | |
| ACTGGTCCTAAAGTAATACC+AGG | - | chr5.2:55994160-55994179 | MS.gene010109:CDS | 40.0% | |
| AGAAAACCCGAGTCTATCAT+TGG | - | chr5.2:55994218-55994237 | MS.gene010109:CDS | 40.0% | |
| AGTAGTTGCTAACACTTCCA+AGG | + | chr5.2:55994484-55994503 | None:intergenic | 40.0% | |
| ATCTATGACAGACTAAGGTC+AGG | - | chr5.2:55993843-55993862 | MS.gene010109:intron | 40.0% | |
| CACCACAAAACCAACTTACA+AGG | + | chr5.2:55994290-55994309 | None:intergenic | 40.0% | |
| CTGGTCCTAAAGTAATACCA+GGG | - | chr5.2:55994161-55994180 | MS.gene010109:CDS | 40.0% | |
| GTAGTAGTTGTAGCAGTAGA+CGG | - | chr5.2:55992884-55992903 | MS.gene010109:CDS | 40.0% | |
| TCTCAAGCCAATGATAGACT+CGG | + | chr5.2:55994228-55994247 | None:intergenic | 40.0% | |
| TTTGGTTGCAGAATGTTCCT+TGG | - | chr5.2:55994464-55994483 | MS.gene010109:CDS | 40.0% | |
| !! | GTTTTGAGCGATAAGAGTTG+TGG | - | chr5.2:55993711-55993730 | MS.gene010109:intron | 40.0% |
| AACTACTACACCGAGGTTTC+CGG | + | chr5.2:55992873-55992892 | None:intergenic | 45.0% | |
| AACTGGACACTCAGAATGGT+GGG | + | chr5.2:55994510-55994529 | None:intergenic | 45.0% | |
| AGGAAAGGACGGCGTTAATA+AGG | - | chr5.2:55994541-55994560 | MS.gene010109:CDS | 45.0% | |
| ATGCTGATGTGCTTGTGATG+GGG | - | chr5.2:55993924-55993943 | MS.gene010109:intron | 45.0% | |
| CATGCTGATGTGCTTGTGAT+GGG | - | chr5.2:55993923-55993942 | MS.gene010109:intron | 45.0% | |
| CTCAAGCCAATGATAGACTC+GGG | + | chr5.2:55994227-55994246 | None:intergenic | 45.0% | |
| GATGATGAAAGAACCAGCGT+CGG | + | chr5.2:55992987-55993006 | None:intergenic | 45.0% | |
| GGAAAGGACGGCGTTAATAA+GGG | - | chr5.2:55994542-55994561 | MS.gene010109:CDS | 45.0% | |
| GTCAGGACTCATGTTGTTGT+TGG | - | chr5.2:55993860-55993879 | MS.gene010109:intron | 45.0% | |
| GTCATTTAGTAGTTTGGGGG+AGG | - | chr5.2:55993679-55993698 | MS.gene010109:intron | 45.0% | |
| GTTGACAACTAGCTAGACAC+TGG | - | chr5.2:55994142-55994161 | MS.gene010109:intron | 45.0% | |
| TAACTGGACACTCAGAATGG+TGG | + | chr5.2:55994511-55994530 | None:intergenic | 45.0% | |
| ! | TGAGATTTTCTAACGCCCAG+CGG | + | chr5.2:55992934-55992953 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGCGATCCAA+AGG | - | chr5.2:55993871-55993890 | MS.gene010109:intron | 45.0% |
| AATCATCGGGCGTAGGTGAT+CGG | + | chr5.2:55992961-55992980 | None:intergenic | 50.0% | |
| AATCCCGGTTCCATCCCTTT+CGG | - | chr5.2:55993046-55993065 | MS.gene010109:intron | 50.0% | |
| ATGTCGGAATCCGGAAACCT+CGG | - | chr5.2:55992860-55992879 | MS.gene010109:CDS | 50.0% | |
| CTGCTACAACTACTACACCG+AGG | + | chr5.2:55992880-55992899 | None:intergenic | 50.0% | |
| GATGGAACCGGGATTAAGAC+CGG | + | chr5.2:55993041-55993060 | None:intergenic | 50.0% | |
| GCATGCTGATGTGCTTGTGA+TGG | - | chr5.2:55993922-55993941 | MS.gene010109:intron | 50.0% | |
| TCAATTGCTGCAGCAAACGC+AGG | + | chr5.2:55993187-55993206 | None:intergenic | 50.0% | |
| ! | ATGTGCTTGTGATGGGGTCT+CGG | - | chr5.2:55993930-55993949 | MS.gene010109:intron | 50.0% |
| ! | GGGCTTTTGGCCCTATTAAG+AGG | - | chr5.2:55993951-55993970 | MS.gene010109:intron | 50.0% |
| ACTGAACTGGGTCCACCGAA+AGG | + | chr5.2:55993064-55993083 | None:intergenic | 55.0% | |
| ATCGCCACCGGTCTTAATCC+CGG | - | chr5.2:55993031-55993050 | MS.gene010109:intron | 55.0% | |
| CTGAACTGGGTCCACCGAAA+GGG | + | chr5.2:55993063-55993082 | None:intergenic | 55.0% | |
| TCCACCGAAAGGGATGGAAC+CGG | + | chr5.2:55993053-55993072 | None:intergenic | 55.0% | |
| TTAAGACCGGTGGCGATGGA+CGG | + | chr5.2:55993028-55993047 | None:intergenic | 55.0% | |
| ! | GATGAAAGAACCAGCGTCGG+TGG | + | chr5.2:55992984-55993003 | None:intergenic | 55.0% |
| ! | TGTGCTTGTGATGGGGTCTC+GGG | - | chr5.2:55993931-55993950 | MS.gene010109:intron | 55.0% |
| !! | ACCAGCGTCGGTGGAATCAT+CGG | + | chr5.2:55992975-55992994 | None:intergenic | 55.0% |
| ACGGCGGTGATTGAACGTGG+AGG | + | chr5.2:55993009-55993028 | None:intergenic | 60.0% | |
| ACTGGGTCCACCGAAAGGGA+TGG | + | chr5.2:55993059-55993078 | None:intergenic | 60.0% | |
| AGAGCATGAACGCTCTCCGC+TGG | - | chr5.2:55992915-55992934 | MS.gene010109:CDS | 60.0% | |
| CCACCGAAAGGGATGGAACC+GGG | + | chr5.2:55993052-55993071 | None:intergenic | 60.0% | |
| GAGCATGAACGCTCTCCGCT+GGG | - | chr5.2:55992916-55992935 | MS.gene010109:CDS | 60.0% | |
| GGAACCGGGATTAAGACCGG+TGG | + | chr5.2:55993038-55993057 | None:intergenic | 60.0% | |
| GGGATTAAGACCGGTGGCGA+TGG | + | chr5.2:55993032-55993051 | None:intergenic | 60.0% | |
| TCGGTGGAATCATCGGGCGT+AGG | + | chr5.2:55992968-55992987 | None:intergenic | 60.0% | |
| TGGACGGCGGTGATTGAACG+TGG | + | chr5.2:55993012-55993031 | None:intergenic | 60.0% | |
| !! | CCAGCGTCGGTGGAATCATC+GGG | + | chr5.2:55992974-55992993 | None:intergenic | 60.0% |
| !! | GTGATGGGGTCTCGGGCTTT+TGG | - | chr5.2:55993938-55993957 | MS.gene010109:intron | 60.0% |
| CCCGATGATTCCACCGACGC+TGG | - | chr5.2:55992971-55992990 | MS.gene010109:intron | 65.0% | |
| CCCGGTTCCATCCCTTTCGG+TGG | - | chr5.2:55993049-55993068 | MS.gene010109:intron | 65.0% | |
| AGACCGGTGGCGATGGACGG+CGG | + | chr5.2:55993025-55993044 | None:intergenic | 70.0% | |
| TCACCGCCGTCCATCGCCAC+CGG | - | chr5.2:55993019-55993038 | MS.gene010109:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 55992860 | 55994571 | 55992860 | ID=MS.gene010109 |
| chr5.2 | mRNA | 55992860 | 55994571 | 55992860 | ID=MS.gene010109.t1;Parent=MS.gene010109 |
| chr5.2 | exon | 55994355 | 55994571 | 55994355 | ID=MS.gene010109.t1.exon1;Parent=MS.gene010109.t1 |
| chr5.2 | CDS | 55994355 | 55994571 | 55994355 | ID=cds.MS.gene010109.t1;Parent=MS.gene010109.t1 |
| chr5.2 | exon | 55994158 | 55994261 | 55994158 | ID=MS.gene010109.t1.exon2;Parent=MS.gene010109.t1 |
| chr5.2 | CDS | 55994158 | 55994261 | 55994158 | ID=cds.MS.gene010109.t1;Parent=MS.gene010109.t1 |
| chr5.2 | exon | 55993459 | 55993577 | 55993459 | ID=MS.gene010109.t1.exon3;Parent=MS.gene010109.t1 |
| chr5.2 | CDS | 55993459 | 55993577 | 55993459 | ID=cds.MS.gene010109.t1;Parent=MS.gene010109.t1 |
| chr5.2 | exon | 55992860 | 55992956 | 55992860 | ID=MS.gene010109.t1.exon4;Parent=MS.gene010109.t1 |
| chr5.2 | CDS | 55992860 | 55992956 | 55992860 | ID=cds.MS.gene010109.t1;Parent=MS.gene010109.t1 |
| Gene Sequence |
| Protein sequence |
