AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034636

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034636.t1 MTR_1g054765 94.350 177 10 0 21 197 1 177 7.82e-127 354
MS.gene034636.t1 MTR_1g054750 79.188 197 34 5 1 197 1 190 2.74e-108 308
MS.gene034636.t1 MTR_1g083950 37.989 179 88 4 13 191 3 158 2.74e-33 117
MS.gene034636.t1 MTR_1g088640 37.705 183 96 4 13 194 2 167 3.99e-32 114
MS.gene034636.t1 MTR_1g088640 37.705 183 93 4 13 194 2 164 4.00e-32 114
MS.gene034636.t1 MTR_1g087200 37.288 177 88 6 17 190 2 158 2.23e-30 109
MS.gene034636.t1 MTR_5g065980 35.882 170 92 6 25 188 10 168 1.80e-28 105
MS.gene034636.t1 MTR_5g065980 36.047 172 91 7 25 188 10 170 2.96e-27 102
MS.gene034636.t1 MTR_7g108830 34.483 174 95 4 22 194 7 162 2.90e-22 88.6
MS.gene034636.t1 MTR_8g058620 34.483 174 95 4 22 194 7 162 2.90e-22 88.6
MS.gene034636.t1 MTR_4g064933 32.530 166 97 3 24 188 6 157 4.68e-19 80.5
MS.gene034636.t1 MTR_2g089350 29.050 179 102 4 24 194 26 187 2.04e-17 77.4
MS.gene034636.t1 MTR_1g088620 50.000 62 31 0 133 194 225 286 3.60e-16 75.1
MS.gene034636.t1 MTR_5g077130 29.167 192 85 7 25 197 7 166 2.99e-15 70.5
MS.gene034636.t1 MTR_5g065980 31.333 150 86 6 25 168 10 148 5.19e-15 70.5
MS.gene034636.t1 MTR_6g006190 31.034 87 60 0 102 188 76 162 5.28e-15 70.1
MS.gene034636.t1 MTR_6g006190 31.034 87 60 0 102 188 52 138 5.30e-15 69.3
MS.gene034636.t1 MTR_4g019800 30.723 166 94 4 27 188 9 157 5.43e-15 69.7
MS.gene034636.t1 MTR_2g034200 30.460 174 102 4 24 194 6 163 5.91e-15 69.7
MS.gene034636.t1 MTR_5g077130 29.688 192 85 7 25 197 7 167 9.04e-15 69.3
MS.gene034636.t1 MTR_7g065770 28.743 167 102 4 24 188 6 157 2.84e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034636.t1 AT3G11930 55.814 172 70 3 24 195 34 199 3.90e-66 202
MS.gene034636.t1 AT3G11930 54.651 172 73 2 24 195 34 200 2.66e-65 199
MS.gene034636.t1 AT3G11930 55.747 174 69 4 24 195 34 201 6.95e-65 199
MS.gene034636.t1 AT3G11930 47.475 198 73 3 24 195 34 226 3.58e-59 185
MS.gene034636.t1 AT3G58450 51.190 168 75 3 25 192 32 192 2.85e-53 169
MS.gene034636.t1 AT3G58450 50.000 168 70 3 25 192 32 185 1.49e-51 164
MS.gene034636.t1 AT1G09740 35.838 173 92 4 25 192 10 168 6.14e-30 108
MS.gene034636.t1 AT1G09740 35.838 173 92 4 25 192 10 168 6.14e-30 108
MS.gene034636.t1 AT2G47710 33.918 171 94 4 22 191 7 159 7.41e-28 103
MS.gene034636.t1 AT3G62550 35.329 167 88 4 24 188 8 156 1.43e-27 102
MS.gene034636.t1 AT1G68300 33.143 175 97 3 15 188 2 157 1.68e-24 94.4
MS.gene034636.t1 AT3G01520 29.787 94 66 0 95 188 69 162 3.02e-15 70.9
MS.gene034636.t1 AT3G03270 30.601 183 76 5 25 188 7 157 6.80e-15 69.3
MS.gene034636.t1 AT5G14680 29.787 94 66 0 95 188 69 162 1.14e-14 69.3
MS.gene034636.t1 AT1G11360 27.528 178 105 5 22 192 37 197 1.14e-13 67.8
MS.gene034636.t1 AT1G11360 27.528 178 105 5 22 192 37 197 1.14e-13 67.8
MS.gene034636.t1 AT1G11360 27.528 178 105 5 22 192 37 197 1.14e-13 67.8
MS.gene034636.t1 AT1G11360 27.528 178 105 5 22 192 37 197 1.14e-13 67.8
MS.gene034636.t1 AT3G17020 29.944 177 88 6 24 188 8 160 1.92e-13 65.5
MS.gene034636.t1 AT3G53990 29.070 172 95 6 27 191 9 160 2.42e-13 65.1

Find 51 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTATGGCTACTGATACTA+TGG 0.183037 1.3:-39792738 MS.gene034636:CDS
GCAGAAAGTGTGATTCTTAA+TGG 0.228368 1.3:-39790765 MS.gene034636:CDS
TATGCATAAGTGTGGAAATT+TGG 0.264690 1.3:+39792662 None:intergenic
TTCAAAGAATCTGCAACTTC+AGG 0.297788 1.3:+39792222 None:intergenic
CCAGCTGGTCCCATAGGTAT+AGG 0.340250 1.3:+39792638 None:intergenic
CTTCTGCACCTCCCTTCACT+TGG 0.373055 1.3:+39792855 None:intergenic
TGATAACCTCTTCAACGTTA+TGG 0.381044 1.3:-39792753 MS.gene034636:CDS
GCAAGTTGATCTCTTAATCA+TGG 0.412365 1.3:-39790703 MS.gene034636:CDS
CAGCTGGTCCCATAGGTATA+GGG 0.428625 1.3:+39792639 None:intergenic
TCTGCAACTTCAGGTGTTGA+TGG 0.429179 1.3:+39792231 None:intergenic
ATCATGGGTAGTCGTGGCCT+TGG 0.451807 1.3:-39790687 MS.gene034636:CDS
CCTATGGGACCAGCTGGTAT+TGG 0.470932 1.3:-39792632 MS.gene034636:intron
TTATGCATACCCTATACCTA+TGG 0.478213 1.3:-39792648 MS.gene034636:CDS
ATCTGCAGCTATTGCCTCAC+GGG 0.482712 1.3:-39792181 MS.gene034636:CDS
TGCAAGAGAAATGATTAGTC+AGG 0.497260 1.3:-39790739 MS.gene034636:CDS
GAAGCTTGTATGCTCTTAAG+TGG 0.498753 1.3:-39792781 MS.gene034636:CDS
GTGGCCTTGGCAAACTCAAA+AGG 0.501962 1.3:-39790674 MS.gene034636:intron
GGTGGCTTCACAATGAGAAT+AGG 0.504003 1.3:+39790486 None:intergenic
ATCTGAAAATGAGGAGGGAA+TGG 0.505451 1.3:-39792705 MS.gene034636:CDS
TTTGGTGGCAGAGCATTCCT+TGG 0.514690 1.3:-39790546 MS.gene034636:intron
CCAATACCAGCTGGTCCCAT+AGG 0.522576 1.3:+39792632 None:intergenic
AAAGAGAAGGATGAAGATGA+AGG 0.523647 1.3:-39792831 MS.gene034636:CDS
TAACGTTGAAGAGGTTATCA+AGG 0.523668 1.3:+39792756 None:intergenic
AAAAGGGTGATGGAGGAAGT+AGG 0.524919 1.3:-39792890 None:intergenic
GCAAATGTGCAAGGACAAGC+AGG 0.531005 1.3:-39792154 MS.gene034636:intron
CTCTTAATCATGGGTAGTCG+TGG 0.541714 1.3:-39790693 MS.gene034636:CDS
AATAGTCACTTACACTTCCA+AGG 0.548894 1.3:+39790529 None:intergenic
TGGAACAACATCTGAAAATG+AGG 0.557443 1.3:-39792714 MS.gene034636:CDS
ATGGCTACTGATACTATGGA+TGG 0.557940 1.3:-39792734 MS.gene034636:CDS
CAAGTTGATCTCTTAATCAT+GGG 0.558572 1.3:-39790702 MS.gene034636:CDS
CAGTAGCCATAACGTTGAAG+AGG 0.571035 1.3:+39792747 None:intergenic
CCTATACCTATGGGACCAGC+TGG 0.573743 1.3:-39792638 MS.gene034636:CDS
GAGGTGCAGAAGAAAAGAGA+AGG 0.584561 1.3:-39792844 MS.gene034636:CDS
TATGCATACCCTATACCTAT+GGG 0.588273 1.3:-39792647 MS.gene034636:CDS
AATCTGCAGCTATTGCCTCA+CGG 0.590946 1.3:-39792182 MS.gene034636:CDS
GTATAGGGTATGCATAAGTG+TGG 0.596401 1.3:+39792654 None:intergenic
ACGGGCTTTGCAAATGTGCA+AGG 0.602324 1.3:-39792163 MS.gene034636:CDS
TGGAAGTGTTGACCAAGTGA+AGG 0.602448 1.3:-39792867 MS.gene034636:CDS
GATGAAGATGAAGGTGATGG+TGG 0.605709 1.3:-39792822 MS.gene034636:CDS
AACAACATCTGAAAATGAGG+AGG 0.606982 1.3:-39792711 MS.gene034636:CDS
GGAAGTGTTGACCAAGTGAA+GGG 0.608076 1.3:-39792866 MS.gene034636:CDS
ATATACTAACCAATACCAGC+TGG 0.608648 1.3:+39792623 None:intergenic
AACGTTGAAGAGGTTATCAA+GGG 0.625008 1.3:+39792757 None:intergenic
AGGGTGATGGAGGAAGTAGG+TGG 0.640246 1.3:-39792887 None:intergenic
ACAACATCTGAAAATGAGGA+GGG 0.642374 1.3:-39792710 MS.gene034636:CDS
AAGGATGAAGATGAAGGTGA+TGG 0.645453 1.3:-39792825 MS.gene034636:CDS
AAGCTTGTATGCTCTTAAGT+GGG 0.653871 1.3:-39792780 MS.gene034636:CDS
GTGGCAATAGATGAGAGTGA+TGG 0.658459 1.3:-39792803 MS.gene034636:CDS
GCACATTTGCAAAGCCCGTG+AGG 0.665936 1.3:+39792167 None:intergenic
TCTCATTGTGAAGCCACCAG+AGG 0.677993 1.3:-39790481 MS.gene034636:CDS
AGTGTTGACCAAGTGAAGGG+AGG 0.727549 1.3:-39792863 MS.gene034636:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTAACTATTTTTTTTTTAT+TGG - chr1.3:39791922-39791941 MS.gene034636:intron 10.0%
!!! TAGATTTTTTTTTTTTTTGA+AGG + chr1.3:39792435-39792454 None:intergenic 10.0%
!! AAATAATGACATTAATGAAT+AGG + chr1.3:39791536-39791555 None:intergenic 15.0%
!! AATAGGATAAATTAAATGAA+GGG + chr1.3:39791519-39791538 None:intergenic 15.0%
!!! AACTAAAATATTTTCTTTGA+CGG - chr1.3:39792077-39792096 MS.gene034636:intron 15.0%
!!! ATCTCATGATTTTTTTTTTT+AGG - chr1.3:39791734-39791753 MS.gene034636:intron 15.0%
!!! GATCTTTTTTTTTTTTTTTG+AGG - chr1.3:39792165-39792184 MS.gene034636:CDS 15.0%
!!! GTTCTAATATTTTTTACATT+TGG - chr1.3:39792778-39792797 MS.gene034636:CDS 15.0%
!!! TAAATTATGGCTTTTAAATT+TGG - chr1.3:39792489-39792508 MS.gene034636:intron 15.0%
!!! TCTAGTTTTTAATAGATAAA+AGG + chr1.3:39790779-39790798 None:intergenic 15.0%
!!! TCTCATGATTTTTTTTTTTA+GGG - chr1.3:39791735-39791754 MS.gene034636:intron 15.0%
!!! TTGTATTTATTTTAGTATAG+AGG + chr1.3:39791492-39791511 None:intergenic 15.0%
!! AAAAATGATGTAACTTTGTA+AGG - chr1.3:39790882-39790901 MS.gene034636:intron 20.0%
!! ATTCATGATACAAAAATGAA+AGG + chr1.3:39791804-39791823 None:intergenic 20.0%
!! GAATAGGATAAATTAAATGA+AGG + chr1.3:39791520-39791539 None:intergenic 20.0%
!! TCTATTAAAAACTAGAACAA+TGG - chr1.3:39790783-39790802 MS.gene034636:intron 20.0%
!! TTCATGATATACAGAAAATA+GGG - chr1.3:39791403-39791422 MS.gene034636:intron 20.0%
!! TTTCATGATATACAGAAAAT+AGG - chr1.3:39791402-39791421 MS.gene034636:intron 20.0%
!!! ACTTTTTTTTTATGGACTTA+TGG - chr1.3:39791827-39791846 MS.gene034636:intron 20.0%
!!! ATTTTGATTTCATTTATGCA+TGG - chr1.3:39792749-39792768 MS.gene034636:CDS 20.0%
!!! CTAATATTTTTTACATTTGG+TGG - chr1.3:39792781-39792800 MS.gene034636:CDS 20.0%
!!! GTGATGATGTTTTAAAAATT+CGG - chr1.3:39792455-39792474 MS.gene034636:intron 20.0%
!!! TGAATCACACTTTTTTTTTA+TGG - chr1.3:39791819-39791838 MS.gene034636:intron 20.0%
!!! TTAATATTGTCCATTTTTCT+TGG - chr1.3:39790912-39790931 MS.gene034636:intron 20.0%
! AATTATGAGAGAATTAGACA+TGG + chr1.3:39790859-39790878 None:intergenic 25.0%
! AATTTCCCATTCATTTGTAT+TGG + chr1.3:39791351-39791370 None:intergenic 25.0%
! ATTTCCCATTCATTTGTATT+GGG + chr1.3:39791350-39791369 None:intergenic 25.0%
! TCATGATATACAGAAAATAG+GGG - chr1.3:39791404-39791423 MS.gene034636:intron 25.0%
! TGTTTCGAATTTCAATTATC+TGG + chr1.3:39791585-39791604 None:intergenic 25.0%
! TTCTCGTAGACAATATAATT+TGG + chr1.3:39791699-39791718 None:intergenic 25.0%
!! TATAGGTTGAGCAATTATAT+AGG - chr1.3:39791984-39792003 MS.gene034636:intron 25.0%
!!! AAAGGAAGATGATTACTTTT+TGG + chr1.3:39791431-39791450 None:intergenic 25.0%
AACTCCCAATACAAATGAAT+GGG - chr1.3:39791343-39791362 MS.gene034636:intron 30.0%
ATGATGTAACTTTGTAAGGT+TGG - chr1.3:39790886-39790905 MS.gene034636:intron 30.0%
ATGCATACTTTCATTGGATT+TGG + chr1.3:39792539-39792558 None:intergenic 30.0%
ATGGATAAAAAGCTGTTGAA+AGG + chr1.3:39791095-39791114 None:intergenic 30.0%
ATTAACTACCCATCAGATAA+AGG + chr1.3:39791296-39791315 None:intergenic 30.0%
CAGGATAGTAGTAAAATCAA+TGG - chr1.3:39791621-39791640 MS.gene034636:intron 30.0%
CATGATATACAGAAAATAGG+GGG - chr1.3:39791405-39791424 MS.gene034636:intron 30.0%
CTTAACTTACACAGATGTAT+CGG + chr1.3:39790993-39791012 None:intergenic 30.0%
CTTACGTTACGTTCTTATAT+AGG - chr1.3:39791967-39791986 MS.gene034636:intron 30.0%
GGTAGATGCTACATAAATTA+TGG - chr1.3:39792476-39792495 MS.gene034636:intron 30.0%
TAACTCCCAATACAAATGAA+TGG - chr1.3:39791342-39791361 MS.gene034636:intron 30.0%
TATGCATAAGTGTGGAAATT+TGG + chr1.3:39790683-39790702 None:intergenic 30.0%
TCATTGATGCATACTTTCAT+TGG + chr1.3:39792545-39792564 None:intergenic 30.0%
TCTATTCCAAATCATGAGAT+TGG + chr1.3:39791763-39791782 None:intergenic 30.0%
TGTTCATTCCTTTATCTGAT+GGG - chr1.3:39791285-39791304 MS.gene034636:intron 30.0%
TTAACTTACACAGATGTATC+GGG + chr1.3:39790992-39791011 None:intergenic 30.0%
TTAGTATAGAGGAAAGTGAA+AGG + chr1.3:39791481-39791500 None:intergenic 30.0%
TTGTTCATTCCTTTATCTGA+TGG - chr1.3:39791284-39791303 MS.gene034636:intron 30.0%
TTTCATTTATGCATGGTTGA+TGG - chr1.3:39792756-39792775 MS.gene034636:CDS 30.0%
! ACGGAAGTGTATAAAATCTA+TGG - chr1.3:39792096-39792115 MS.gene034636:intron 30.0%
! CAAAGTATCACACAAGAAAA+AGG + chr1.3:39791071-39791090 None:intergenic 30.0%
! CGGAAGTGTATAAAATCTAT+GGG - chr1.3:39792097-39792116 MS.gene034636:intron 30.0%
! GAAAGGAAGATTTTCTTTTG+AGG + chr1.3:39791464-39791483 None:intergenic 30.0%
!! CAAGTTGATCTCTTAATCAT+GGG - chr1.3:39792640-39792659 MS.gene034636:CDS 30.0%
AAAGAGAAGGATGAAGATGA+AGG - chr1.3:39790511-39790530 MS.gene034636:CDS 35.0%
AACAACATCTGAAAATGAGG+AGG - chr1.3:39790631-39790650 MS.gene034636:intron 35.0%
AACGTTGAAGAGGTTATCAA+GGG + chr1.3:39790588-39790607 None:intergenic 35.0%
AAGCTTGTATGCTCTTAAGT+GGG - chr1.3:39790562-39790581 MS.gene034636:intron 35.0%
AAGTATGCATCAATGAAAGC+AGG - chr1.3:39792549-39792568 MS.gene034636:intron 35.0%
AATAGTCACTTACACTTCCA+AGG + chr1.3:39792816-39792835 None:intergenic 35.0%
ACAACATCTGAAAATGAGGA+GGG - chr1.3:39790632-39790651 MS.gene034636:intron 35.0%
ACGGGAATGAGAAAAATAGA+TGG - chr1.3:39791031-39791050 MS.gene034636:intron 35.0%
AGGAAGTAAGCAAAGAAAGT+TGG + chr1.3:39790759-39790778 None:intergenic 35.0%
ATATACTAACCAATACCAGC+TGG + chr1.3:39790722-39790741 None:intergenic 35.0%
ATTCAGATACTCTTTAGCCA+AGG + chr1.3:39791881-39791900 None:intergenic 35.0%
CATAGTATATATGCACGACT+AGG + chr1.3:39791857-39791876 None:intergenic 35.0%
CGGAAATGAGCAAAATCATA+TGG + chr1.3:39790953-39790972 None:intergenic 35.0%
CGGGAATGAGAAAAATAGAT+GGG - chr1.3:39791032-39791051 MS.gene034636:intron 35.0%
GAAATGAGTTTCGCTTTACA+AGG + chr1.3:39792026-39792045 None:intergenic 35.0%
GAGCAATTCTCCAAGAAAAA+TGG + chr1.3:39790925-39790944 None:intergenic 35.0%
GTGCATATATACTATGACCT+TGG - chr1.3:39791861-39791880 MS.gene034636:intron 35.0%
TAACGTTGAAGAGGTTATCA+AGG + chr1.3:39790589-39790608 None:intergenic 35.0%
TATGCATACCCTATACCTAT+GGG - chr1.3:39790695-39790714 MS.gene034636:CDS 35.0%
TGATAACCTCTTCAACGTTA+TGG - chr1.3:39790589-39790608 MS.gene034636:intron 35.0%
TGGAACAACATCTGAAAATG+AGG - chr1.3:39790628-39790647 MS.gene034636:intron 35.0%
TTATGCATACCCTATACCTA+TGG - chr1.3:39790694-39790713 MS.gene034636:CDS 35.0%
TTCAAAGAATCTGCAACTTC+AGG + chr1.3:39791123-39791142 None:intergenic 35.0%
! GCAGAAAGTGTGATTCTTAA+TGG - chr1.3:39792577-39792596 MS.gene034636:intron 35.0%
! TGCAAGAGAAATGATTAGTC+AGG - chr1.3:39792603-39792622 MS.gene034636:intron 35.0%
!! GCAAGTTGATCTCTTAATCA+TGG - chr1.3:39792639-39792658 MS.gene034636:CDS 35.0%
!! GGAAGATTTTCTTTTGAGGA+AGG + chr1.3:39791460-39791479 None:intergenic 35.0%
!! TTTTGAGGAAGGAAAGTGAA+AGG + chr1.3:39791449-39791468 None:intergenic 35.0%
AAGGATGAAGATGAAGGTGA+TGG - chr1.3:39790517-39790536 MS.gene034636:CDS 40.0%
ACAGACATTATTCTCTCGTC+AGG - chr1.3:39791602-39791621 MS.gene034636:intron 40.0%
AGCGAAACTCATTTCCTTGA+CGG - chr1.3:39792031-39792050 MS.gene034636:intron 40.0%
AGGGAACCAATCTCATGATT+TGG - chr1.3:39791754-39791773 MS.gene034636:intron 40.0%
ATCTGAAAATGAGGAGGGAA+TGG - chr1.3:39790637-39790656 MS.gene034636:intron 40.0%
ATGGCTACTGATACTATGGA+TGG - chr1.3:39790608-39790627 MS.gene034636:intron 40.0%
CGTTATGGCTACTGATACTA+TGG - chr1.3:39790604-39790623 MS.gene034636:intron 40.0%
GAAGCTTGTATGCTCTTAAG+TGG - chr1.3:39790561-39790580 MS.gene034636:intron 40.0%
GTATAGGGTATGCATAAGTG+TGG + chr1.3:39790691-39790710 None:intergenic 40.0%
TGTGTAAGTTAAGTCACGCT+CGG - chr1.3:39791000-39791019 MS.gene034636:intron 40.0%
! AGCTGCAGATTTTTCTTGCT+GGG + chr1.3:39791151-39791170 None:intergenic 40.0%
! TAGCTGCAGATTTTTCTTGC+TGG + chr1.3:39791152-39791171 None:intergenic 40.0%
! TTTTTACGGAACTTCCGTCA+AGG + chr1.3:39792048-39792067 None:intergenic 40.0%
!!! CTTACCTTTTGAGTTTGCCA+AGG + chr1.3:39792675-39792694 None:intergenic 40.0%
AATCTGCAGCTATTGCCTCA+CGG - chr1.3:39791160-39791179 MS.gene034636:intron 45.0%
CAGTAGCCATAACGTTGAAG+AGG + chr1.3:39790598-39790617 None:intergenic 45.0%
CTCTTAATCATGGGTAGTCG+TGG - chr1.3:39792649-39792668 MS.gene034636:CDS 45.0%
GAGGTGCAGAAGAAAAGAGA+AGG - chr1.3:39790498-39790517 MS.gene034636:CDS 45.0%
GGTGGCTTCACAATGAGAAT+AGG + chr1.3:39792859-39792878 None:intergenic 45.0%
GTGGCAATAGATGAGAGTGA+TGG - chr1.3:39790539-39790558 MS.gene034636:intron 45.0%
! GATGAAGATGAAGGTGATGG+TGG - chr1.3:39790520-39790539 MS.gene034636:CDS 45.0%
! TTTTTATGGTGCTCCTCTGG+TGG + chr1.3:39792877-39792896 None:intergenic 45.0%
!! GGAAGTGTTGACCAAGTGAA+GGG - chr1.3:39790476-39790495 MS.gene034636:CDS 45.0%
!! TCTGCAACTTCAGGTGTTGA+TGG + chr1.3:39791114-39791133 None:intergenic 45.0%
!! TGCTTTTTATGGTGCTCCTC+TGG + chr1.3:39792880-39792899 None:intergenic 45.0%
!! TGGAAGTGTTGACCAAGTGA+AGG - chr1.3:39790475-39790494 MS.gene034636:CDS 45.0%
!! CATAAATATTAAATAAATTT+AGG + chr1.3:39792377-39792396 None:intergenic 5.0%
!! TTTAATATAAAATATACAAT+TGG + chr1.3:39792226-39792245 None:intergenic 5.0%
!!! TAGTTTTTTTTTTTTTTTTA+CGG + chr1.3:39792062-39792081 None:intergenic 5.0%
ACGGGCTTTGCAAATGTGCA+AGG - chr1.3:39791179-39791198 MS.gene034636:intron 50.0%
ATCTGCAGCTATTGCCTCAC+GGG - chr1.3:39791161-39791180 MS.gene034636:intron 50.0%
CAGCTGGTCCCATAGGTATA+GGG + chr1.3:39790706-39790725 None:intergenic 50.0%
GCAAATGTGCAAGGACAAGC+AGG - chr1.3:39791188-39791207 MS.gene034636:intron 50.0%
TCTCATTGTGAAGCCACCAG+AGG - chr1.3:39792861-39792880 MS.gene034636:CDS 50.0%
! GTGGCCTTGGCAAACTCAAA+AGG - chr1.3:39792668-39792687 MS.gene034636:CDS 50.0%
! TTTGGTGGCAGAGCATTCCT+TGG - chr1.3:39792796-39792815 MS.gene034636:CDS 50.0%
!! AGTGTTGACCAAGTGAAGGG+AGG - chr1.3:39790479-39790498 MS.gene034636:CDS 50.0%
!! GTCACGCTCGGCTATTTTGA+CGG - chr1.3:39791012-39791031 MS.gene034636:intron 50.0%
!!! TCACGCTCGGCTATTTTGAC+GGG - chr1.3:39791013-39791032 MS.gene034636:intron 50.0%
ATCATGGGTAGTCGTGGCCT+TGG - chr1.3:39792655-39792674 MS.gene034636:CDS 55.0%
CCAATACCAGCTGGTCCCAT+AGG + chr1.3:39790713-39790732 None:intergenic 55.0%
CCAGCTGGTCCCATAGGTAT+AGG + chr1.3:39790707-39790726 None:intergenic 55.0%
CCTATACCTATGGGACCAGC+TGG - chr1.3:39790704-39790723 MS.gene034636:CDS 55.0%
CCTATGGGACCAGCTGGTAT+TGG - chr1.3:39790710-39790729 MS.gene034636:CDS 55.0%
CGGGCACGTGTATTTCTCAG+CGG + chr1.3:39790973-39790992 None:intergenic 55.0%
CTTCTGCACCTCCCTTCACT+TGG + chr1.3:39790490-39790509 None:intergenic 55.0%
GCACATTTGCAAAGCCCGTG+AGG + chr1.3:39791178-39791197 None:intergenic 55.0%
TGTGCAAGGACAAGCAGGTG+CGG - chr1.3:39791193-39791212 MS.gene034636:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 39790461 39792903 39790461 ID=MS.gene034636
chr1.3 mRNA 39790461 39792903 39790461 ID=MS.gene034636.t1;Parent=MS.gene034636
chr1.3 exon 39792633 39792903 39792633 ID=MS.gene034636.t1.exon1;Parent=MS.gene034636.t1
chr1.3 CDS 39792633 39792903 39792633 ID=cds.MS.gene034636.t1;Parent=MS.gene034636.t1
chr1.3 exon 39792155 39792261 39792155 ID=MS.gene034636.t1.exon2;Parent=MS.gene034636.t1
chr1.3 CDS 39792155 39792261 39792155 ID=cds.MS.gene034636.t1;Parent=MS.gene034636.t1
chr1.3 exon 39790675 39790793 39790675 ID=MS.gene034636.t1.exon3;Parent=MS.gene034636.t1
chr1.3 CDS 39790675 39790793 39790675 ID=cds.MS.gene034636.t1;Parent=MS.gene034636.t1
chr1.3 exon 39790461 39790557 39790461 ID=MS.gene034636.t1.exon4;Parent=MS.gene034636.t1
chr1.3 CDS 39790461 39790557 39790461 ID=cds.MS.gene034636.t1;Parent=MS.gene034636.t1
Gene Sequence

>MS.gene034636

ATGGAGGAAGTAGGTGGAAGTGTTGACCAAGTGAAGGGAGGTGCAGAAGAAAAGAGAAGGATGAAGATGAAGGTGATGGTGGCAATAGATGAGAGTGATGGAAGCTTGTATGCTCTTAAGTGGGCCCTTGATAACCTCTTCAACGTTATGGCTACTGATACTATGGATGGAACAACATCTGAAAATGAGGAGGGAATGGTGTTTCTTGTTCATGTTGAGCCAAATTTCCACACTTATGCATACCCTATACCTATGGGACCAGCTGGTATTGGTTAGTATATCACTATATACTTTACCAACTTTCTTTGCTTACTTCCTTTTATCTATTAAAAACTAGAACAATGGAATTTCGAGACTAAATAAAATAAATTTCATGACTCTCTTGATTTTTTTTTCCATGTCTAATTCTCTCATAATTATTAAAAATGATGTAACTTTGTAAGGTTGGCTTTTAATATTGTCCATTTTTCTTGGAGAATTGCTCTTCTTCCATATGATTTTGCTCATTTCCGCTGAGAAATACACGTGCCCGATACATCTGTGTAAGTTAAGTCACGCTCGGCTATTTTGACGGGAATGAGAAAAATAGATGGGAGAAGAGTCAATTCCTTTTTCTTGTGTGATACTTTGTCCTTTCAACAGCTTTTTATCCATCAACACCTGAAGTTGCAGATTCTTTGAAGAAAGCCCAGCAAGAAAAATCTGCAGCTATTGCCTCACGGGCTTTGCAAATGTGCAAGGACAAGCAGGTGCGGTAACTATGATATTTTTTGTATTTGTAGTGCTTCGCTATATTTGAAAATTGTTTTACTCTTTTTCAAAATTGTTCATTCCTTTATCTGATGGGTAGTTAATGCTGCTGAAAAATGTCGAGCAAGAGTTAACTCCCAATACAAATGAATGGGAAATTTTACAAGTGATAAGAGTAATTTTCAGATTATTTTCATGATATACAGAAAATAGGGGGCCAAAAAGTAATCATCTTCCTTTCACTTTCCTTCCTCAAAAGAAAATCTTCCTTTCACTTTCCTCTATACTAAAATAAATACAAAATACCCTTCATTTAATTTATCCTATTCATTAATGTCATTATTTTGAAAATATTCATCAATTAATTAACTCCAGATAATTGAAATTCGAAACAGACATTATTCTCTCGTCAGGATAGTAGTAAAATCAATGGTAAAAACAATTTCAATTTCGATGTGAAATTAATATTTTTTTAAATTTTACTTCCAAATTATATTGTCTACGAGAACAATTTTAACAAAGAATCTCATGATTTTTTTTTTTAGGGAACCAATCTCATGATTTGGAATAGATTTAGAATTTTGTTTTCTCCTTTCATTTTTGTATCATGAATCACACTTTTTTTTTATGGACTTATGGTAAACCTAGTCGTGCATATATACTATGACCTTGGCTAAAGAGTATCTGAATTGCTTAAAAATCAAATCTGTTAGTAACTATTTTTTTTTTATTGGTAATTAAAAAATAAATAAAAATCTTACGTTACGTTCTTATATAGGTTGAGCAATTATATAGGTTGAGCAATTTTTAAACCTTGTAAAGCGAAACTCATTTCCTTGACGGAAGTTCCGTAAAAAAAAAAAAAAAACTAAAATATTTTCTTTGACGGAAGTGTATAAAATCTATGGGTTTTTTTTTTTTATCATGTGTAAATTTTCACGTTGCAGATGTTAAGATCTTTTTTTTTTTTTTTGAGGAACAAATCTTAAGATCTTTAAAAGAGTAACTTTGACCAATTGTATATTTTATATTAAATATGTAGTATTTTAATAAATAATTGTTGTTTTTCAATAAAAAAGTTATTAATTTAGTTGCTTTATCATGTGTAATATTGCATATGTTAGACGACTTTGTCAAAAAATTGCACATGTTGTTAGACAAATCCTAAATTTATTTAATATTTATGTATTAAATTTACTTTCATCTAGTGATGATGTTTTTCCTTCAAAAAAAAAAAAAATCTAGTGATGATGTTTTAAAAATTCGGTAGATGCTACATAAATTATGGCTTTTAAATTTGGTCGCTCTAAATTGAATTTCTTAAGCCAAATCCAATGAAAGTATGCATCAATGAAAGCAGGTAAAAGCAGAAAGTGTGATTCTTAATGGAGATGCAAGAGAAATGATTAGTCAGGCTACAGAGAAAATGCAAGTTGATCTCTTAATCATGGGTAGTCGTGGCCTTGGCAAACTCAAAAGGTAAGTGTTTTCTATGAATTAGTATTCATAATGAAATTGAAGTAATAAGCTTGCAAATAATTTTGATTTCATTTATGCATGGTTGATGGTTCTAATATTTTTTACATTTGGTGGCAGAGCATTCCTTGGAAGTGTAAGTGACTATTGTGCACATCATGCAAAAGCACCTATTCTCATTGTGAAGCCACCAGAGGAGCACCATAAAAAGCATTGA
Protein sequence

>MS.gene034636.t1

MEEVGGSVDQVKGGAEEKRRMKMKVMVAIDESDGSLYALKWALDNLFNVMATDTMDGTTSENEEGMVFLVHVEPNFHTYAYPIPMGPAGIAFYPSTPEVADSLKKAQQEKSAAIASRALQMCKDKQVKAESVILNGDAREMISQATEKMQVDLLIMGSRGLGKLKRAFLGSVSDYCAHHAKAPILIVKPPEEHHKKH