Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03531.t1 | RHN66515.1 | 96 | 177 | 7 | 0 | 28 | 204 | 37 | 213 | 1.20E-89 | 339.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03531.t1 | O13737 | 34.1 | 167 | 95 | 3 | 28 | 193 | 17 | 169 | 4.6e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03531.t1 | A0A072UTY5 | 96.0 | 177 | 7 | 0 | 28 | 204 | 19 | 195 | 8.6e-90 | 339.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067529 | MS.gene03531 | PPI |
| MS.gene03531 | MS.gene018908 | PPI |
| MS.gene03531 | MS.gene067528 | PPI |
| MS.gene067530 | MS.gene03531 | PPI |
| MS.gene03534 | MS.gene03531 | PPI |
| MS.gene03531 | MS.gene018905 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03531.t1 | MTR_3g435200 | 94.972 | 179 | 9 | 0 | 26 | 204 | 17 | 195 | 3.59e-123 | 346 |
| MS.gene03531.t1 | MTR_3g435170 | 85.799 | 169 | 22 | 1 | 26 | 192 | 17 | 185 | 6.46e-100 | 288 |
| MS.gene03531.t1 | MTR_3g435230 | 72.928 | 181 | 47 | 1 | 26 | 204 | 17 | 197 | 4.54e-95 | 275 |
| MS.gene03531.t1 | MTR_3g435250 | 69.061 | 181 | 54 | 1 | 26 | 204 | 17 | 197 | 8.21e-89 | 259 |
| MS.gene03531.t1 | MTR_5g041930 | 60.656 | 183 | 68 | 1 | 26 | 204 | 20 | 202 | 6.59e-78 | 232 |
| MS.gene03531.t1 | MTR_3g435230 | 67.227 | 119 | 37 | 1 | 26 | 142 | 17 | 135 | 4.39e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03531.t1 | AT1G18720 | 58.242 | 182 | 71 | 1 | 26 | 202 | 21 | 202 | 2.90e-72 | 218 |
| MS.gene03531.t1 | AT1G18720 | 58.242 | 182 | 71 | 1 | 26 | 202 | 21 | 202 | 2.90e-72 | 218 |
| MS.gene03531.t1 | AT1G74440 | 54.237 | 177 | 76 | 1 | 26 | 197 | 21 | 197 | 1.98e-66 | 203 |
| MS.gene03531.t1 | AT1G74440 | 54.237 | 177 | 76 | 1 | 26 | 197 | 21 | 197 | 1.98e-66 | 203 |
Find 49 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCTTACCCGGTTGGCCT+CGG | 0.298135 | 3.1:-27562719 | MS.gene03531:CDS |
| GTTCCTATCCCGAGGCCAAC+CGG | 0.327040 | 3.1:+27562710 | None:intergenic |
| CGGTTCTTACCTTTCTTTGT+TGG | 0.339825 | 3.1:-27561685 | MS.gene03531:CDS |
| TAATTCACATCCTCTTTGTT+TGG | 0.345262 | 3.1:-27561877 | MS.gene03531:CDS |
| AGACAGGGTGGATAAAATTA+AGG | 0.357983 | 3.1:+27561792 | None:intergenic |
| GAAACGTGCACCAGCTCTAT+TGG | 0.365026 | 3.1:-27561258 | MS.gene03531:CDS |
| TTTGTCTGAAATCCAGGATA+TGG | 0.368016 | 3.1:+27560853 | None:intergenic |
| GGTTCTTACCTTTCTTTGTT+GGG | 0.381903 | 3.1:-27561684 | MS.gene03531:CDS |
| CTTACCTTTCTTTGTTGGGT+TGG | 0.393169 | 3.1:-27561680 | MS.gene03531:CDS |
| AATTTACCTCAAACACATAA+TGG | 0.412526 | 3.1:+27561353 | None:intergenic |
| CGGTCTCTTCTACGCTGCTT+TGG | 0.423498 | 3.1:-27561732 | MS.gene03531:CDS |
| ACAAGAGCAGTGAAGAGAAT+TGG | 0.431796 | 3.1:+27561854 | None:intergenic |
| TGCACCTTTGTCTGAAATCC+AGG | 0.445276 | 3.1:+27560847 | None:intergenic |
| GTTCATATCCTATGGATGAT+TGG | 0.446343 | 3.1:+27560875 | None:intergenic |
| AGGATATGGTTCATATCCTA+TGG | 0.457257 | 3.1:+27560867 | None:intergenic |
| TATAAAAGCTGGTTCGTTTG+CGG | 0.462639 | 3.1:-27561708 | MS.gene03531:CDS |
| ATAGGATATGAACCATATCC+TGG | 0.473768 | 3.1:-27560865 | MS.gene03531:CDS |
| GCTGCTGAGTAGGAGGTTCA+TGG | 0.474351 | 3.1:+27562755 | None:intergenic |
| TCTCTTACCCGGTTGGCCTC+GGG | 0.474429 | 3.1:-27562718 | MS.gene03531:CDS |
| TTTGTATTCGCTGTTGTCTA+CGG | 0.475674 | 3.1:-27561752 | MS.gene03531:CDS |
| CCATTGGCTACGAACTCGCT+TGG | 0.488285 | 3.1:-27561637 | MS.gene03531:CDS |
| GCTGCTTTGGATATAAAAGC+TGG | 0.503772 | 3.1:-27561719 | MS.gene03531:CDS |
| TACCCGGTTGGCCTCGGGAT+AGG | 0.504011 | 3.1:-27562713 | MS.gene03531:CDS |
| CTCATCAAGGGTCTCTTACC+CGG | 0.511286 | 3.1:-27562729 | MS.gene03531:CDS |
| AGAACCAACCCAACAAAGAA+AGG | 0.516029 | 3.1:+27561676 | None:intergenic |
| ACGCCCCATACTTGCGGACG+AGG | 0.524161 | 3.1:+27562685 | None:intergenic |
| ACTCAGCAGCAACCTCATCA+AGG | 0.528891 | 3.1:-27562742 | MS.gene03531:CDS |
| AAAATGGTGGAGTGAAGTAA+AGG | 0.535761 | 3.1:+27561828 | None:intergenic |
| TAGATGCTAATATCAAAGAA+TGG | 0.537671 | 3.1:-27560816 | MS.gene03531:CDS |
| TATGATCTTGCAGGTTGTGT+TGG | 0.547348 | 3.1:-27561413 | MS.gene03531:intron |
| TGATGAGGTTGCTGCTGAGT+AGG | 0.550715 | 3.1:+27562745 | None:intergenic |
| TGGCTACGAACTCGCTTGGA+AGG | 0.554028 | 3.1:-27561633 | MS.gene03531:intron |
| TGGATTTCAGACAAAGGTGC+AGG | 0.555241 | 3.1:-27560845 | MS.gene03531:CDS |
| TTCAGACAAAGGTGCAGGCA+AGG | 0.555519 | 3.1:-27560840 | MS.gene03531:CDS |
| TTCCTATCCCGAGGCCAACC+GGG | 0.558891 | 3.1:+27562711 | None:intergenic |
| TCAAGGGTCTCTTACCCGGT+TGG | 0.561477 | 3.1:-27562725 | MS.gene03531:CDS |
| CAGATCCTCCAATCATCCAT+AGG | 0.576938 | 3.1:-27560883 | MS.gene03531:CDS |
| CATATCCTATGGATGATTGG+AGG | 0.601474 | 3.1:+27560878 | None:intergenic |
| CTCAGCAGCAACCTCATCAA+GGG | 0.601727 | 3.1:-27562741 | MS.gene03531:CDS |
| TGAGGTTGCTGCTGAGTAGG+AGG | 0.611476 | 3.1:+27562748 | None:intergenic |
| CCAAGCGAGTTCGTAGCCAA+TGG | 0.611989 | 3.1:+27561637 | None:intergenic |
| CGCCCCATACTTGCGGACGA+GGG | 0.620053 | 3.1:+27562686 | None:intergenic |
| ACGAGGGTGTTCCTATCCCG+AGG | 0.638819 | 3.1:+27562702 | None:intergenic |
| AAAAGCTGGTTCGTTTGCGG+CGG | 0.643405 | 3.1:-27561705 | MS.gene03531:CDS |
| CAACAGCGAATACAAAACCT+AGG | 0.650128 | 3.1:+27561759 | None:intergenic |
| GCAATGTTGTCCAATAGAGC+TGG | 0.655435 | 3.1:+27561248 | None:intergenic |
| AGAGAATTGGCCAAACAAAG+AGG | 0.660028 | 3.1:+27561867 | None:intergenic |
| CGGGTAAGAGACCCTTGATG+AGG | 0.663582 | 3.1:+27562730 | None:intergenic |
| ATATCCTGGATTTCAGACAA+AGG | 0.713970 | 3.1:-27560851 | MS.gene03531:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTATAGATAAGA+TGG | + | chr3.1:27560900-27560919 | None:intergenic | 10.0% |
| !! | AAAGAAATTAATGCTTAATT+GGG | + | chr3.1:27561961-27561980 | None:intergenic | 15.0% |
| !! | AAGTTGAAATTATAATACAA+AGG | - | chr3.1:27562467-27562486 | MS.gene03531:intron | 15.0% |
| !! | GTTAATTATTTATTTGGAAA+TGG | + | chr3.1:27561259-27561278 | None:intergenic | 15.0% |
| !! | TAAAGAAATTAATGCTTAAT+TGG | + | chr3.1:27561962-27561981 | None:intergenic | 15.0% |
| !! | TGTATTATAATTTCAACTTA+GGG | + | chr3.1:27562466-27562485 | None:intergenic | 15.0% |
| !! | TTGTATTATAATTTCAACTT+AGG | + | chr3.1:27562467-27562486 | None:intergenic | 15.0% |
| !! | TTTCTTTCAAATGAATTATT+TGG | - | chr3.1:27561340-27561359 | MS.gene03531:intron | 15.0% |
| !!! | TATATATGGATGATTTTAAT+TGG | + | chr3.1:27561486-27561505 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTGCATATATATA+TGG | + | chr3.1:27561500-27561519 | None:intergenic | 15.0% |
| !! | GATAAAGAATCATTTGTTTA+AGG | + | chr3.1:27561425-27561444 | None:intergenic | 20.0% |
| !!! | ATGTGAATTATGATGTTTTT+TGG | + | chr3.1:27561652-27561671 | None:intergenic | 20.0% |
| !!! | TCTAATAGACTCATTTTTTT+AGG | + | chr3.1:27561586-27561605 | None:intergenic | 20.0% |
| !!! | TGTGAATTATGATGTTTTTT+GGG | + | chr3.1:27561651-27561670 | None:intergenic | 20.0% |
| !!! | TTTCTTTACATTTTATTTCG+AGG | - | chr3.1:27561998-27562017 | MS.gene03531:intron | 20.0% |
| !!! | TTTTTGGTTTGAATTGATAA+AGG | + | chr3.1:27561548-27561567 | None:intergenic | 20.0% |
| ! | AAAAATGAACACACAATGTT+TGG | + | chr3.1:27562547-27562566 | None:intergenic | 25.0% |
| ! | AAAAATGAGTCTATTAGATC+TGG | - | chr3.1:27561588-27561607 | MS.gene03531:intron | 25.0% |
| ! | AAGAATCATTTGTTTAAGGA+AGG | + | chr3.1:27561421-27561440 | None:intergenic | 25.0% |
| ! | AATTCTAATCAACTTAGAGA+TGG | + | chr3.1:27560932-27560951 | None:intergenic | 25.0% |
| ! | AATTTACCTCAAACACATAA+TGG | + | chr3.1:27562189-27562208 | None:intergenic | 25.0% |
| ! | ACATAACAATGAAAAAATGG+TGG | + | chr3.1:27561727-27561746 | None:intergenic | 25.0% |
| ! | AGGACATAACAATGAAAAAA+TGG | + | chr3.1:27561730-27561749 | None:intergenic | 25.0% |
| ! | ATTTATGAATATGATCTTGC+AGG | - | chr3.1:27562117-27562136 | MS.gene03531:intron | 25.0% |
| ! | CATATAATAAAAATGCCATG+AGG | - | chr3.1:27562042-27562061 | MS.gene03531:intron | 25.0% |
| ! | CTTAGTCAAAGAAACAAATT+TGG | - | chr3.1:27561445-27561464 | MS.gene03531:intron | 25.0% |
| ! | TAGATGCTAATATCAAAGAA+TGG | - | chr3.1:27562723-27562742 | MS.gene03531:CDS | 25.0% |
| ! | TTTCTTTCAAAACTGAAACA+AGG | - | chr3.1:27562611-27562630 | MS.gene03531:intron | 25.0% |
| !! | ATTAAGTCACAACAGATTTT+TGG | + | chr3.1:27562096-27562115 | None:intergenic | 25.0% |
| !! | CAAATTTGTTTCTTTGACTA+AGG | + | chr3.1:27561447-27561466 | None:intergenic | 25.0% |
| !! | CTCATGGCATTTTTATTATA+TGG | + | chr3.1:27562044-27562063 | None:intergenic | 25.0% |
| AAAACGAATCACATTTGAGA+TGG | + | chr3.1:27560995-27561014 | None:intergenic | 30.0% | |
| AAAGAAATCAGTGAGTAACT+CGG | + | chr3.1:27562598-27562617 | None:intergenic | 30.0% | |
| CTAGGTTAAAAATCAAGACA+GGG | + | chr3.1:27561765-27561784 | None:intergenic | 30.0% | |
| TAATTCACATCCTCTTTGTT+TGG | - | chr3.1:27561662-27561681 | MS.gene03531:CDS | 30.0% | |
| TCCACAGTAATGTTGTAATA+TGG | - | chr3.1:27562405-27562424 | MS.gene03531:intron | 30.0% | |
| TCCATATTACAACATTACTG+TGG | + | chr3.1:27562409-27562428 | None:intergenic | 30.0% | |
| ! | ATAATTTTCGATATGCCTCA+TGG | + | chr3.1:27562060-27562079 | None:intergenic | 30.0% |
| !!! | AGTTTTGTTGCAAATTCCAT+TGG | - | chr3.1:27561886-27561905 | MS.gene03531:CDS | 30.0% |
| !!! | TTTTTTAGGTCACAAGAGAA+TGG | + | chr3.1:27561572-27561591 | None:intergenic | 30.0% |
| AACAAATTTGGTCCAATCCA+TGG | - | chr3.1:27561457-27561476 | MS.gene03531:intron | 35.0% | |
| ACAAATTTGGTCCAATCCAT+GGG | - | chr3.1:27561458-27561477 | MS.gene03531:intron | 35.0% | |
| AGACAGGGTGGATAAAATTA+AGG | + | chr3.1:27561750-27561769 | None:intergenic | 35.0% | |
| AGGATATGGTTCATATCCTA+TGG | + | chr3.1:27562675-27562694 | None:intergenic | 35.0% | |
| ATAGGATATGAACCATATCC+TGG | - | chr3.1:27562674-27562693 | MS.gene03531:intron | 35.0% | |
| ATATCCTGGATTTCAGACAA+AGG | - | chr3.1:27562688-27562707 | MS.gene03531:intron | 35.0% | |
| CCTAGGTTAAAAATCAAGAC+AGG | + | chr3.1:27561766-27561785 | None:intergenic | 35.0% | |
| GGTTCTTACCTTTCTTTGTT+GGG | - | chr3.1:27561855-27561874 | MS.gene03531:CDS | 35.0% | |
| GTTCATATCCTATGGATGAT+TGG | + | chr3.1:27562667-27562686 | None:intergenic | 35.0% | |
| TCTGTGATAAGAACCATAGA+AGG | + | chr3.1:27561626-27561645 | None:intergenic | 35.0% | |
| TTTGTATTCGCTGTTGTCTA+CGG | - | chr3.1:27561787-27561806 | MS.gene03531:CDS | 35.0% | |
| ! | AAAATGGTGGAGTGAAGTAA+AGG | + | chr3.1:27561714-27561733 | None:intergenic | 35.0% |
| ! | CATTGCTCAAGCTTTTCTAA+TGG | - | chr3.1:27562308-27562327 | MS.gene03531:intron | 35.0% |
| ! | CATTTGAGATGGTAGTTTAG+TGG | + | chr3.1:27560984-27561003 | None:intergenic | 35.0% |
| ! | CCTGTCTTGATTTTTAACCT+AGG | - | chr3.1:27561763-27561782 | MS.gene03531:CDS | 35.0% |
| ! | TTTGTCTGAAATCCAGGATA+TGG | + | chr3.1:27562689-27562708 | None:intergenic | 35.0% |
| ! | TTTTGGCCATTATGTGTTTG+AGG | - | chr3.1:27562180-27562199 | MS.gene03531:intron | 35.0% |
| !! | TATAAAAGCTGGTTCGTTTG+CGG | - | chr3.1:27561831-27561850 | MS.gene03531:CDS | 35.0% |
| !!! | ATGATTTTAATTGGCACCCA+TGG | + | chr3.1:27561477-27561496 | None:intergenic | 35.0% |
| !!! | GATGTCTCACATTTTTTTCG+CGG | - | chr3.1:27561935-27561954 | MS.gene03531:intron | 35.0% |
| !!! | GTCACAAGAGAATGGTTTTT+TGG | + | chr3.1:27561564-27561583 | None:intergenic | 35.0% |
| ACAAGAGCAGTGAAGAGAAT+TGG | + | chr3.1:27561688-27561707 | None:intergenic | 40.0% | |
| ACCTCAAGAACCACGAAAAA+AGG | + | chr3.1:27562336-27562355 | None:intergenic | 40.0% | |
| ACTCGTAGTCACTGATAAGT+GGG | - | chr3.1:27562378-27562397 | MS.gene03531:intron | 40.0% | |
| AGAACCAACCCAACAAAGAA+AGG | + | chr3.1:27561866-27561885 | None:intergenic | 40.0% | |
| AGAGAATTGGCCAAACAAAG+AGG | + | chr3.1:27561675-27561694 | None:intergenic | 40.0% | |
| CAACAGCGAATACAAAACCT+AGG | + | chr3.1:27561783-27561802 | None:intergenic | 40.0% | |
| CATATCCTATGGATGATTGG+AGG | + | chr3.1:27562664-27562683 | None:intergenic | 40.0% | |
| CGGTTCTTACCTTTCTTTGT+TGG | - | chr3.1:27561854-27561873 | MS.gene03531:CDS | 40.0% | |
| CTTACCTTTCTTTGTTGGGT+TGG | - | chr3.1:27561859-27561878 | MS.gene03531:CDS | 40.0% | |
| GGTTAAAAATCAAGACAGGG+TGG | + | chr3.1:27561762-27561781 | None:intergenic | 40.0% | |
| TATGATCTTGCAGGTTGTGT+TGG | - | chr3.1:27562126-27562145 | MS.gene03531:intron | 40.0% | |
| TTTAATTGGCACCCATGGAT+TGG | + | chr3.1:27561472-27561491 | None:intergenic | 40.0% | |
| ! | CGTATCATGCTTTTCAGTGA+TGG | + | chr3.1:27562218-27562237 | None:intergenic | 40.0% |
| ! | GCTGCTTTGGATATAAAAGC+TGG | - | chr3.1:27561820-27561839 | MS.gene03531:CDS | 40.0% |
| !! | GAAAAGCACTTTGCCTTCTA+TGG | - | chr3.1:27561610-27561629 | MS.gene03531:intron | 40.0% |
| !! | GGCTACTCAGTTGTTTTGTT+GGG | - | chr3.1:27562147-27562166 | MS.gene03531:intron | 40.0% |
| !! | TGGCTACTCAGTTGTTTTGT+TGG | - | chr3.1:27562146-27562165 | MS.gene03531:intron | 40.0% |
| !!! | TCCTTTTTTCGTGGTTCTTG+AGG | - | chr3.1:27562332-27562351 | MS.gene03531:intron | 40.0% |
| !!! | TCTAATGGCTCCTTTTTTCG+TGG | - | chr3.1:27562323-27562342 | MS.gene03531:intron | 40.0% |
| CAGATCCTCCAATCATCCAT+AGG | - | chr3.1:27562656-27562675 | MS.gene03531:intron | 45.0% | |
| GACTCGTAGTCACTGATAAG+TGG | - | chr3.1:27562377-27562396 | MS.gene03531:intron | 45.0% | |
| GCAATGTTGTCCAATAGAGC+TGG | + | chr3.1:27562294-27562313 | None:intergenic | 45.0% | |
| ! | AACTGTAGTCGCTTTGCAGT+TGG | - | chr3.1:27562490-27562509 | MS.gene03531:intron | 45.0% |
| ! | TGCACCTTTGTCTGAAATCC+AGG | + | chr3.1:27562695-27562714 | None:intergenic | 45.0% |
| ! | TGGATTTCAGACAAAGGTGC+AGG | - | chr3.1:27562694-27562713 | MS.gene03531:intron | 45.0% |
| ! | TGTTGGGCAGGACAGATTTT+TGG | - | chr3.1:27562163-27562182 | MS.gene03531:intron | 45.0% |
| !! | ACTCAGTTGTTTTGTTGGGC+AGG | - | chr3.1:27562151-27562170 | MS.gene03531:intron | 45.0% |
| !!! | ATTTTTGTTAATTATTTATT+TGG | + | chr3.1:27561265-27561284 | None:intergenic | 5.0% |
| ACTCAGCAGCAACCTCATCA+AGG | - | chr3.1:27560797-27560816 | MS.gene03531:CDS | 50.0% | |
| CGCTTTGCAGTTGGATACGT+AGG | - | chr3.1:27562499-27562518 | MS.gene03531:intron | 50.0% | |
| CGTAGTCACTGATAAGTGGG+TGG | - | chr3.1:27562381-27562400 | MS.gene03531:intron | 50.0% | |
| CTCAGCAGCAACCTCATCAA+GGG | - | chr3.1:27560798-27560817 | MS.gene03531:CDS | 50.0% | |
| CTCATCAAGGGTCTCTTACC+CGG | - | chr3.1:27560810-27560829 | MS.gene03531:CDS | 50.0% | |
| GAAACGTGCACCAGCTCTAT+TGG | - | chr3.1:27562281-27562300 | MS.gene03531:intron | 50.0% | |
| TGATGAGGTTGCTGCTGAGT+AGG | + | chr3.1:27560797-27560816 | None:intergenic | 50.0% | |
| ! | TTCAGACAAAGGTGCAGGCA+AGG | - | chr3.1:27562699-27562718 | MS.gene03531:CDS | 50.0% |
| !! | AAAAGCTGGTTCGTTTGCGG+CGG | - | chr3.1:27561834-27561853 | MS.gene03531:CDS | 50.0% |
| AACACCCTCGTCCGCAAGTA+TGG | - | chr3.1:27560849-27560868 | MS.gene03531:CDS | 55.0% | |
| ACACCCTCGTCCGCAAGTAT+GGG | - | chr3.1:27560850-27560869 | MS.gene03531:CDS | 55.0% | |
| ACATCCACGCCCCATACTTG+CGG | + | chr3.1:27560863-27560882 | None:intergenic | 55.0% | |
| CCAAGCGAGTTCGTAGCCAA+TGG | + | chr3.1:27561905-27561924 | None:intergenic | 55.0% | |
| CGGGTAAGAGACCCTTGATG+AGG | + | chr3.1:27560812-27560831 | None:intergenic | 55.0% | |
| CGGTCTCTTCTACGCTGCTT+TGG | - | chr3.1:27561807-27561826 | MS.gene03531:CDS | 55.0% | |
| TATGGGGCGTGGATGTGAGA+TGG | - | chr3.1:27560867-27560886 | MS.gene03531:CDS | 55.0% | |
| TCAAGGGTCTCTTACCCGGT+TGG | - | chr3.1:27560814-27560833 | MS.gene03531:CDS | 55.0% | |
| TGAGGTTGCTGCTGAGTAGG+AGG | + | chr3.1:27560794-27560813 | None:intergenic | 55.0% | |
| TGGCTACGAACTCGCTTGGA+AGG | - | chr3.1:27561906-27561925 | MS.gene03531:intron | 55.0% | |
| ! | CCATTGGCTACGAACTCGCT+TGG | - | chr3.1:27561902-27561921 | MS.gene03531:intron | 55.0% |
| CACCCTCGTCCGCAAGTATG+GGG | - | chr3.1:27560851-27560870 | MS.gene03531:CDS | 60.0% | |
| GTTCCTATCCCGAGGCCAAC+CGG | + | chr3.1:27560832-27560851 | None:intergenic | 60.0% | |
| TTCCTATCCCGAGGCCAACC+GGG | + | chr3.1:27560831-27560850 | None:intergenic | 60.0% | |
| !! | ACGAGGGTGTTCCTATCCCG+AGG | + | chr3.1:27560840-27560859 | None:intergenic | 60.0% |
| !! | GTCTCTTACCCGGTTGGCCT+CGG | - | chr3.1:27560820-27560839 | MS.gene03531:CDS | 60.0% |
| !! | TCTCTTACCCGGTTGGCCTC+GGG | - | chr3.1:27560821-27560840 | MS.gene03531:CDS | 60.0% |
| ACGCCCCATACTTGCGGACG+AGG | + | chr3.1:27560857-27560876 | None:intergenic | 65.0% | |
| CGCCCCATACTTGCGGACGA+GGG | + | chr3.1:27560856-27560875 | None:intergenic | 65.0% | |
| TCGTCCGCAAGTATGGGGCG+TGG | - | chr3.1:27560856-27560875 | MS.gene03531:CDS | 65.0% | |
| !! | TACCCGGTTGGCCTCGGGAT+AGG | - | chr3.1:27560826-27560845 | MS.gene03531:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 27560786 | 27562775 | 27560786 | ID=MS.gene03531 |
| chr3.1 | mRNA | 27560786 | 27562775 | 27560786 | ID=MS.gene03531.t1;Parent=MS.gene03531 |
| chr3.1 | exon | 27562696 | 27562775 | 27562696 | ID=MS.gene03531.t1.exon1;Parent=MS.gene03531.t1 |
| chr3.1 | CDS | 27562696 | 27562775 | 27562696 | ID=cds.MS.gene03531.t1;Parent=MS.gene03531.t1 |
| chr3.1 | exon | 27561634 | 27561916 | 27561634 | ID=MS.gene03531.t1.exon2;Parent=MS.gene03531.t1 |
| chr3.1 | CDS | 27561634 | 27561916 | 27561634 | ID=cds.MS.gene03531.t1;Parent=MS.gene03531.t1 |
| chr3.1 | exon | 27561360 | 27561422 | 27561360 | ID=MS.gene03531.t1.exon3;Parent=MS.gene03531.t1 |
| chr3.1 | CDS | 27561360 | 27561422 | 27561360 | ID=cds.MS.gene03531.t1;Parent=MS.gene03531.t1 |
| chr3.1 | exon | 27561208 | 27561279 | 27561208 | ID=MS.gene03531.t1.exon4;Parent=MS.gene03531.t1 |
| chr3.1 | CDS | 27561208 | 27561279 | 27561208 | ID=cds.MS.gene03531.t1;Parent=MS.gene03531.t1 |
| chr3.1 | exon | 27560786 | 27560902 | 27560786 | ID=MS.gene03531.t1.exon5;Parent=MS.gene03531.t1 |
| chr3.1 | CDS | 27560786 | 27560902 | 27560786 | ID=cds.MS.gene03531.t1;Parent=MS.gene03531.t1 |
| Gene Sequence |
| Protein sequence |
