Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067530.t1 | XP_013459266.1 | 95.4 | 197 | 9 | 0 | 1 | 197 | 1 | 197 | 2.90E-101 | 377.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067530.t1 | O13737 | 35.7 | 182 | 100 | 3 | 6 | 186 | 4 | 169 | 8.3e-20 | 98.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067530.t1 | A0A072UUK0 | 95.4 | 197 | 9 | 0 | 1 | 197 | 1 | 197 | 2.1e-101 | 377.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052413 | MS.gene067530 | -0.802154 | 6.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067530 | MS.gene067528 | PPI |
| MS.gene067530 | MS.gene03534 | PPI |
| MS.gene067530 | MS.gene018905 | PPI |
| MS.gene067530 | MS.gene03531 | PPI |
| MS.gene067530 | MS.gene018908 | PPI |
| MS.gene067530 | MS.gene067529 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067530.t1 | MTR_3g435170 | 96.216 | 185 | 7 | 0 | 1 | 185 | 1 | 185 | 8.37e-130 | 363 |
| MS.gene067530.t1 | MTR_3g435200 | 85.279 | 197 | 27 | 1 | 1 | 197 | 1 | 195 | 8.57e-122 | 342 |
| MS.gene067530.t1 | MTR_3g435230 | 78.173 | 197 | 43 | 0 | 1 | 197 | 1 | 197 | 1.72e-117 | 332 |
| MS.gene067530.t1 | MTR_3g435250 | 73.096 | 197 | 53 | 0 | 1 | 197 | 1 | 197 | 2.86e-107 | 306 |
| MS.gene067530.t1 | MTR_5g041930 | 61.616 | 198 | 74 | 2 | 2 | 197 | 5 | 202 | 4.02e-89 | 260 |
| MS.gene067530.t1 | MTR_3g435230 | 75.556 | 135 | 33 | 0 | 1 | 135 | 1 | 135 | 3.14e-74 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067530.t1 | AT1G18720 | 63.000 | 200 | 67 | 2 | 1 | 195 | 5 | 202 | 4.75e-91 | 265 |
| MS.gene067530.t1 | AT1G18720 | 63.000 | 200 | 67 | 2 | 1 | 195 | 5 | 202 | 4.75e-91 | 265 |
| MS.gene067530.t1 | AT1G74440 | 58.549 | 193 | 75 | 2 | 1 | 189 | 5 | 196 | 6.98e-82 | 242 |
| MS.gene067530.t1 | AT1G74440 | 58.549 | 193 | 75 | 2 | 1 | 189 | 5 | 196 | 6.98e-82 | 242 |
Find 45 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTTATTACTCTTCTTTGC+TGG | 0.232129 | 3.2:-26505101 | MS.gene067530:CDS |
| TGTTGGACAGGACAGTTTAT+TGG | 0.338801 | 3.2:-26502594 | MS.gene067530:CDS |
| ATATCCTGGATTTCAGAAAA+AGG | 0.356957 | 3.2:-26502033 | MS.gene067530:CDS |
| GGTAAAATTAAGAACTGTTT+GGG | 0.358495 | 3.2:+26505218 | None:intergenic |
| TAATCCATATCCTCTTTGTT+TGG | 0.362403 | 3.2:-26505299 | MS.gene067530:CDS |
| TTGGCCAAACAAAGAGGATA+TGG | 0.364468 | 3.2:+26505295 | None:intergenic |
| TGGTCTGTTCTATGTTGCTT+TGG | 0.369768 | 3.2:-26505148 | MS.gene067530:CDS |
| GGGTAAAATTAAGAACTGTT+TGG | 0.391504 | 3.2:+26505217 | None:intergenic |
| ATAAGAGAGGTGAAAAGAAT+TGG | 0.399398 | 3.2:+26505276 | None:intergenic |
| CCAAATGGGTCTACTAGATC+TGG | 0.409239 | 3.2:-26505373 | None:intergenic |
| ATTACTCTTCTTTGCTGGGT+TGG | 0.411851 | 3.2:-26505096 | MS.gene067530:CDS |
| GGTTATTACTCTTCTTTGCT+GGG | 0.419018 | 3.2:-26505100 | MS.gene067530:CDS |
| TATGGATTATGATGTTTGTT+GGG | 0.436070 | 3.2:+26505313 | None:intergenic |
| GTTCATATCCTATGGATGAT+TGG | 0.446343 | 3.2:+26502057 | None:intergenic |
| AGGATATGGTTCATATCCTA+TGG | 0.457257 | 3.2:+26502049 | None:intergenic |
| TCTAATGGCTCCTTTCTTCG+TGG | 0.470305 | 3.2:-26502435 | MS.gene067530:CDS |
| TATGATCTTTCAGGTTGTGT+TGG | 0.471851 | 3.2:-26502631 | MS.gene067530:intron |
| ATATGGATTATGATGTTTGT+TGG | 0.473286 | 3.2:+26505312 | None:intergenic |
| ATAGGATATGAACCATATCC+TGG | 0.473768 | 3.2:-26502047 | MS.gene067530:CDS |
| ACCTCGAGAACCACGAAGAA+AGG | 0.489993 | 3.2:+26502425 | None:intergenic |
| ACAGGACAGTTTATTGGCCA+TGG | 0.503780 | 3.2:-26502588 | MS.gene067530:CDS |
| CCATCAGCTACGAACTCGCT+TGG | 0.505037 | 3.2:-26505053 | MS.gene067530:CDS |
| TATTGGCCATGGTGTGTTTG+AGG | 0.510211 | 3.2:-26502577 | MS.gene067530:intron |
| TCCTTTCTTCGTGGTTCTCG+AGG | 0.510511 | 3.2:-26502426 | MS.gene067530:intron |
| CCAAGGTTGAAAATTAAGAC+AGG | 0.511962 | 3.2:+26505192 | None:intergenic |
| GAAAAGCACTTTGCTTTCTA+CGG | 0.512570 | 3.2:-26505351 | MS.gene067530:CDS |
| GTTGCTTTGGATGTAAAAGC+TGG | 0.531354 | 3.2:-26505135 | MS.gene067530:CDS |
| GAAACGTGCACCAGCTCTGT+TGG | 0.534482 | 3.2:-26502477 | MS.gene067530:CDS |
| CAGCTACGAACTCGCTTGGA+AGG | 0.542656 | 3.2:-26505049 | MS.gene067530:intron |
| TAGATGCTAATATCAAAGAA+TGG | 0.550042 | 3.2:-26501998 | MS.gene067530:CDS |
| TGCTAATATCAAAGAATGGA+AGG | 0.551493 | 3.2:-26501994 | MS.gene067530:CDS |
| GCAAGGTTGTCCAACAGAGC+TGG | 0.559240 | 3.2:+26502467 | None:intergenic |
| AAAGTGGAGGGGTAAAGTAA+AGG | 0.566777 | 3.2:+26505250 | None:intergenic |
| AAAGTAAAGGTAAATAAGAG+AGG | 0.567066 | 3.2:+26505263 | None:intergenic |
| CCAAGCGAGTTCGTAGCTGA+TGG | 0.574503 | 3.2:+26505053 | None:intergenic |
| AAATTAAGAACTGTTTGGGA+AGG | 0.586474 | 3.2:+26505222 | None:intergenic |
| TAGATCCTCCAATCATCCAT+AGG | 0.596680 | 3.2:-26502065 | MS.gene067530:CDS |
| CATATCCTATGGATGATTGG+AGG | 0.601474 | 3.2:+26502060 | None:intergenic |
| CCATTAGAAAAGCTTGAGCA+AGG | 0.604956 | 3.2:+26502450 | None:intergenic |
| GTTGAAAATTAAGACAGGGT+GGG | 0.626841 | 3.2:+26505197 | None:intergenic |
| CAAGGTTGAAAATTAAGACA+GGG | 0.653900 | 3.2:+26505193 | None:intergenic |
| GGTTGAAAATTAAGACAGGG+TGG | 0.654034 | 3.2:+26505196 | None:intergenic |
| AAAGAATTGGCCAAACAAAG+AGG | 0.655032 | 3.2:+26505289 | None:intergenic |
| GATTTACCTCAAACACACCA+TGG | 0.675806 | 3.2:+26502571 | None:intergenic |
| AAACAGCAAATACAAAACCA+AGG | 0.682234 | 3.2:+26505175 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAAAAATTTAATTCG+GGG | + | chr3.2:26502434-26502453 | None:intergenic | 10.0% |
| !!! | AATGATTTTTTTTTTTGTAA+TGG | - | chr3.2:26502452-26502471 | MS.gene067530:CDS | 10.0% |
| !!! | TTTTATTTTTTAGAAAAACA+CGG | - | chr3.2:26502347-26502366 | MS.gene067530:intron | 10.0% |
| !! | AAACAAATTTATATCATAAC+AGG | + | chr3.2:26502909-26502928 | None:intergenic | 15.0% |
| !! | AACAAATTTATATCATAACA+GGG | + | chr3.2:26502908-26502927 | None:intergenic | 15.0% |
| !! | TAATTAAAAATTTAATTCGG+GGG | + | chr3.2:26502433-26502452 | None:intergenic | 15.0% |
| !! | TCTATATACTAATTAATCAA+AGG | + | chr3.2:26504062-26504081 | None:intergenic | 15.0% |
| !!! | AAGGCATTTTAAAAATAAAA+AGG | - | chr3.2:26503473-26503492 | MS.gene067530:intron | 15.0% |
| !!! | ACATTTTTTCAAGTTATTAT+TGG | - | chr3.2:26504275-26504294 | MS.gene067530:intron | 15.0% |
| !!! | ATTTTTTTTTTTGTAATGGT+CGG | - | chr3.2:26502456-26502475 | MS.gene067530:CDS | 15.0% |
| !!! | TGTTTAATGAAGATATATTT+TGG | - | chr3.2:26503632-26503651 | MS.gene067530:intron | 15.0% |
| !!! | TTACATTTTGTTGAATATAA+TGG | - | chr3.2:26503956-26503975 | MS.gene067530:intron | 15.0% |
| !! | AATTAACTTATTGAGTCTAA+TGG | - | chr3.2:26503267-26503286 | MS.gene067530:intron | 20.0% |
| !! | ACTTTAACATCATAGTTTAA+AGG | - | chr3.2:26503546-26503565 | MS.gene067530:intron | 20.0% |
| !! | AGAAAAAGAAATTCACAATA+TGG | + | chr3.2:26503929-26503948 | None:intergenic | 20.0% |
| !! | ATCTTCAAAATTGTAAGATT+CGG | + | chr3.2:26503737-26503756 | None:intergenic | 20.0% |
| !! | TGATTAATTAGTATATAGAG+TGG | - | chr3.2:26504063-26504082 | MS.gene067530:intron | 20.0% |
| !! | TTGTCTACAATTATTAATAG+TGG | - | chr3.2:26503829-26503848 | MS.gene067530:intron | 20.0% |
| !!! | AAGTTTTTGATTAGTGTTAA+TGG | - | chr3.2:26503608-26503627 | MS.gene067530:intron | 20.0% |
| !!! | ATAAAGACGAAATTGTTATT+TGG | + | chr3.2:26503065-26503084 | None:intergenic | 20.0% |
| !!! | ATAAGTATCTTTTTTTTTGG+TGG | + | chr3.2:26504507-26504526 | None:intergenic | 20.0% |
| !!! | CAAATTTTCCTTTGTTTTTT+AGG | - | chr3.2:26502821-26502840 | MS.gene067530:intron | 20.0% |
| !!! | GTGATAAGTATCTTTTTTTT+TGG | + | chr3.2:26504510-26504529 | None:intergenic | 20.0% |
| !!! | TAAAGACGAAATTGTTATTT+GGG | + | chr3.2:26503064-26503083 | None:intergenic | 20.0% |
| !!! | TATTATCACTTTTCAACATT+AGG | + | chr3.2:26504029-26504048 | None:intergenic | 20.0% |
| !!! | TGACTCACATTTTTTAATTT+AGG | + | chr3.2:26503509-26503528 | None:intergenic | 20.0% |
| !!! | TGTTAATTTTGTTGAGAAAT+GGG | - | chr3.2:26502391-26502410 | MS.gene067530:intron | 20.0% |
| !!! | TTTATTTTAAGTTGTGTGAT+TGG | - | chr3.2:26502983-26503002 | MS.gene067530:intron | 20.0% |
| !!! | TTTTTTTTTTTGTAATGGTC+GGG | - | chr3.2:26502457-26502476 | MS.gene067530:CDS | 20.0% |
| ! | AAAGTAAAGGTAAATAAGAG+AGG | + | chr3.2:26502077-26502096 | None:intergenic | 25.0% |
| ! | AATGCCTTTGTATTTGAAAA+AGG | + | chr3.2:26503461-26503480 | None:intergenic | 25.0% |
| ! | ATGCCTTTGTATTTGAAAAA+GGG | + | chr3.2:26503460-26503479 | None:intergenic | 25.0% |
| ! | ATTTATGACTATGATCTTTC+AGG | - | chr3.2:26504697-26504716 | MS.gene067530:intron | 25.0% |
| ! | GATAGAATATTTAAGTGGAT+TGG | - | chr3.2:26504351-26504370 | MS.gene067530:intron | 25.0% |
| ! | GGTAAAATTAAGAACTGTTT+GGG | + | chr3.2:26502122-26502141 | None:intergenic | 25.0% |
| ! | GTATCATAGTTATAGATCAT+TGG | - | chr3.2:26503019-26503038 | MS.gene067530:intron | 25.0% |
| ! | GTATTACGATTTCAAACTTA+GGG | + | chr3.2:26505060-26505079 | None:intergenic | 25.0% |
| ! | GTTGTGACATTCTTATTATA+TGG | + | chr3.2:26504624-26504643 | None:intergenic | 25.0% |
| ! | TAGATGCTAATATCAAAGAA+TGG | - | chr3.2:26505339-26505358 | MS.gene067530:CDS | 25.0% |
| ! | TCATATGCAAATTGATGAAA+AGG | + | chr3.2:26503109-26503128 | None:intergenic | 25.0% |
| ! | TCATTTACTAACATGACATT+TGG | + | chr3.2:26503404-26503423 | None:intergenic | 25.0% |
| ! | TCTTCAAAATTGTAAGATTC+GGG | + | chr3.2:26503736-26503755 | None:intergenic | 25.0% |
| ! | TGTATTACGATTTCAAACTT+AGG | + | chr3.2:26505061-26505080 | None:intergenic | 25.0% |
| ! | TTCTTTCAAAACTGAAACAA+AGG | - | chr3.2:26505227-26505246 | MS.gene067530:CDS | 25.0% |
| !! | AATTAGTTTCACATCATTCA+CGG | + | chr3.2:26502573-26502592 | None:intergenic | 25.0% |
| !! | ATATGGATTATGATGTTTGT+TGG | + | chr3.2:26502028-26502047 | None:intergenic | 25.0% |
| !! | ATCTAAAATCCAAATGAATG+AGG | + | chr3.2:26503163-26503182 | None:intergenic | 25.0% |
| !! | GTGTTAATTTTGTTGAGAAA+TGG | - | chr3.2:26502390-26502409 | MS.gene067530:intron | 25.0% |
| !! | GTTTTTATGATTGAGTAAGA+TGG | - | chr3.2:26502925-26502944 | MS.gene067530:intron | 25.0% |
| !! | TATGGATTATGATGTTTGTT+GGG | + | chr3.2:26502027-26502046 | None:intergenic | 25.0% |
| !! | TCTAAAATCCAAATGAATGA+GGG | + | chr3.2:26503162-26503181 | None:intergenic | 25.0% |
| !! | TTTGACTATTTTCTGAATCT+TGG | - | chr3.2:26502591-26502610 | MS.gene067530:CDS | 25.0% |
| !!! | AAAGACGAAATTGTTATTTG+GGG | + | chr3.2:26503063-26503082 | None:intergenic | 25.0% |
| !!! | AAATTTACAAGTTCTGAACT+TGG | - | chr3.2:26504089-26504108 | MS.gene067530:intron | 25.0% |
| !!! | AATCCCTTTTTCAAATACAA+AGG | - | chr3.2:26503454-26503473 | MS.gene067530:intron | 25.0% |
| !!! | ATGAAGATATATTTTGGAGA+AGG | - | chr3.2:26503638-26503657 | MS.gene067530:intron | 25.0% |
| !!! | TGAAGATATATTTTGGAGAA+GGG | - | chr3.2:26503639-26503658 | MS.gene067530:intron | 25.0% |
| !!! | TTTGTATTTGCTGTTTTCTA+TGG | - | chr3.2:26502169-26502188 | MS.gene067530:intron | 25.0% |
| !!! | TTTTCAAGTTATTATTGGAC+CGG | - | chr3.2:26504280-26504299 | MS.gene067530:intron | 25.0% |
| !!! | TTTTTTTTTTGTAATGGTCG+GGG | - | chr3.2:26502458-26502477 | MS.gene067530:CDS | 25.0% |
| AAAAATGAACACACGATGTT+TGG | + | chr3.2:26505139-26505158 | None:intergenic | 30.0% | |
| AAACAGCAAATACAAAACCA+AGG | + | chr3.2:26502165-26502184 | None:intergenic | 30.0% | |
| AAATTAAGAACTGTTTGGGA+AGG | + | chr3.2:26502118-26502137 | None:intergenic | 30.0% | |
| AACATATTCTACCATGTTCA+AGG | + | chr3.2:26503361-26503380 | None:intergenic | 30.0% | |
| AACATGGTAGAATATGTTCA+TGG | - | chr3.2:26503363-26503382 | MS.gene067530:intron | 30.0% | |
| ACAATAAAGTACGAAGAGTT+GGG | - | chr3.2:26502712-26502731 | MS.gene067530:intron | 30.0% | |
| AGAAGACTTGGATTATTAGA+CGG | - | chr3.2:26503980-26503999 | MS.gene067530:intron | 30.0% | |
| ATAAGAGAGGTGAAAAGAAT+TGG | + | chr3.2:26502064-26502083 | None:intergenic | 30.0% | |
| ATATCCTGGATTTCAGAAAA+AGG | - | chr3.2:26505304-26505323 | MS.gene067530:CDS | 30.0% | |
| ATTGATGAAAAGGACGAAAA+TGG | + | chr3.2:26503099-26503118 | None:intergenic | 30.0% | |
| ATTTATATCATAACAGGGTC+AGG | + | chr3.2:26502903-26502922 | None:intergenic | 30.0% | |
| CAAGGTTGAAAATTAAGACA+GGG | + | chr3.2:26502147-26502166 | None:intergenic | 30.0% | |
| CATATGCAAAATGACCAAAT+GGG | - | chr3.2:26503199-26503218 | MS.gene067530:intron | 30.0% | |
| CTAAAATCCAAATGAATGAG+GGG | + | chr3.2:26503161-26503180 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr3.2:26504460-26504479 | MS.gene067530:intron | 30.0% | |
| GGGTAAAATTAAGAACTGTT+TGG | + | chr3.2:26502123-26502142 | None:intergenic | 30.0% | |
| GTCATGTTAGTAAATGAAGT+TGG | - | chr3.2:26503407-26503426 | MS.gene067530:intron | 30.0% | |
| TAATCCATATCCTCTTTGTT+TGG | - | chr3.2:26502038-26502057 | MS.gene067530:CDS | 30.0% | |
| TACTAACATGACATTTGGAA+AGG | + | chr3.2:26503399-26503418 | None:intergenic | 30.0% | |
| TATGATGCTATTCCTGTATT+AGG | - | chr3.2:26503895-26503914 | MS.gene067530:intron | 30.0% | |
| TCATATGCAAAATGACCAAA+TGG | - | chr3.2:26503198-26503217 | MS.gene067530:intron | 30.0% | |
| TGACTCATAGTTACCAATAA+GGG | - | chr3.2:26504971-26504990 | MS.gene067530:intron | 30.0% | |
| TGCATAATATATGCAAAGTC+TGG | + | chr3.2:26502492-26502511 | None:intergenic | 30.0% | |
| TGCTAATATCAAAGAATGGA+AGG | - | chr3.2:26505343-26505362 | MS.gene067530:CDS | 30.0% | |
| TGCTCGATAGAATATTTAAG+TGG | - | chr3.2:26504346-26504365 | MS.gene067530:intron | 30.0% | |
| TTGACTCATAGTTACCAATA+AGG | - | chr3.2:26504970-26504989 | MS.gene067530:intron | 30.0% | |
| TTGTCTTAAATAGTGCATCA+AGG | + | chr3.2:26503583-26503602 | None:intergenic | 30.0% | |
| ! | AGAAACTTTCTTTTGTTGCT+TGG | + | chr3.2:26505369-26505388 | None:intergenic | 30.0% |
| ! | GATATGTCTAAAATTGCGTA+CGG | - | chr3.2:26502687-26502706 | MS.gene067530:intron | 30.0% |
| ! | GTATCTGTATTCTTTTGTAC+CGG | - | chr3.2:26505169-26505188 | MS.gene067530:CDS | 30.0% |
| ! | GTTCTAAGTTCTAACAGATT+TGG | - | chr3.2:26505198-26505217 | MS.gene067530:CDS | 30.0% |
| ! | TATCTGTATTCTTTTGTACC+GGG | - | chr3.2:26505170-26505189 | MS.gene067530:CDS | 30.0% |
| ! | TCATAACACAGTTTTCTAAC+TGG | + | chr3.2:26503880-26503899 | None:intergenic | 30.0% |
| !! | AAGACGAAATTGTTATTTGG+GGG | + | chr3.2:26503062-26503081 | None:intergenic | 30.0% |
| !! | GTGAGAAGTATCTAAATACT+TGG | + | chr3.2:26504408-26504427 | None:intergenic | 30.0% |
| !! | TGTAAAAGCTGGTTCTTTTA+CGG | - | chr3.2:26502213-26502232 | MS.gene067530:intron | 30.0% |
| !!! | TTTTCCTTTGTTTTTTAGGC+CGG | - | chr3.2:26502825-26502844 | MS.gene067530:intron | 30.0% |
| !!! | TTTTTCTGAAATCCAGGATA+TGG | + | chr3.2:26505305-26505324 | None:intergenic | 30.0% |
| AAAACCGGCCTAAAAAACAA+AGG | + | chr3.2:26502832-26502851 | None:intergenic | 35.0% | |
| AAAGAATTGGCCAAACAAAG+AGG | + | chr3.2:26502051-26502070 | None:intergenic | 35.0% | |
| ACTCATAGTTACCAATAAGG+GGG | - | chr3.2:26504973-26504992 | MS.gene067530:intron | 35.0% | |
| AGAAGCAACTATGAATAGCA+TGG | + | chr3.2:26503796-26503815 | None:intergenic | 35.0% | |
| AGGATATGGTTCATATCCTA+TGG | + | chr3.2:26505291-26505310 | None:intergenic | 35.0% | |
| AGGGATTAAACTTGTGCTAA+TGG | + | chr3.2:26503441-26503460 | None:intergenic | 35.0% | |
| ATAGGATATGAACCATATCC+TGG | - | chr3.2:26505290-26505309 | MS.gene067530:CDS | 35.0% | |
| CCAAGGTTGAAAATTAAGAC+AGG | + | chr3.2:26502148-26502167 | None:intergenic | 35.0% | |
| GAAGACTTGGATTATTAGAC+GGG | - | chr3.2:26503981-26504000 | MS.gene067530:intron | 35.0% | |
| GAATATAATGGCAGAAGACT+TGG | - | chr3.2:26503968-26503987 | MS.gene067530:intron | 35.0% | |
| GACAATAAAGTACGAAGAGT+TGG | - | chr3.2:26502711-26502730 | MS.gene067530:intron | 35.0% | |
| GACTCATAGTTACCAATAAG+GGG | - | chr3.2:26504972-26504991 | MS.gene067530:intron | 35.0% | |
| GAGTGAATTGTGAAAACCTT+TGG | + | chr3.2:26504818-26504837 | None:intergenic | 35.0% | |
| GGTTATTACTCTTCTTTGCT+GGG | - | chr3.2:26502237-26502256 | MS.gene067530:intron | 35.0% | |
| GTTCATATCCTATGGATGAT+TGG | + | chr3.2:26505283-26505302 | None:intergenic | 35.0% | |
| GTTGAAAATTAAGACAGGGT+GGG | + | chr3.2:26502143-26502162 | None:intergenic | 35.0% | |
| TAAGAATGTCACAACGCATA+TGG | - | chr3.2:26504629-26504648 | MS.gene067530:intron | 35.0% | |
| TAATAGTGGCATGTTGATGT+TGG | - | chr3.2:26503843-26503862 | MS.gene067530:intron | 35.0% | |
| TAGAACTTAGAACAACAACC+CGG | + | chr3.2:26505191-26505210 | None:intergenic | 35.0% | |
| TAGACTGCTACTATCTGATT+GGG | - | chr3.2:26504127-26504146 | MS.gene067530:intron | 35.0% | |
| TCAAAATTGTAAGATTCGGG+TGG | + | chr3.2:26503733-26503752 | None:intergenic | 35.0% | |
| TTGGAGACGTAAGCAAAATT+TGG | - | chr3.2:26505100-26505119 | MS.gene067530:CDS | 35.0% | |
| TTGTTGAGAAATGGGTAATC+CGG | - | chr3.2:26502399-26502418 | MS.gene067530:intron | 35.0% | |
| ! | CCTGTCTTAATTTTCAACCT+TGG | - | chr3.2:26502145-26502164 | MS.gene067530:intron | 35.0% |
| ! | CGATGTTTGGTAACAAAGTT+AGG | + | chr3.2:26505126-26505145 | None:intergenic | 35.0% |
| !! | GAAAAGCACTTTGCTTTCTA+CGG | - | chr3.2:26501986-26502005 | MS.gene067530:CDS | 35.0% |
| !! | TATGATCTTTCAGGTTGTGT+TGG | - | chr3.2:26504706-26504725 | MS.gene067530:intron | 35.0% |
| !! | TTGAAGAGCGTTGATCAATT+TGG | + | chr3.2:26503666-26503685 | None:intergenic | 35.0% |
| !! | TTTTGACAGCTTGCTTTACA+GGG | - | chr3.2:26504374-26504393 | MS.gene067530:intron | 35.0% |
| !!! | ATCTTTTTTTTTGGTGGTGC+CGG | + | chr3.2:26504501-26504520 | None:intergenic | 35.0% |
| AAAGTGGAGGGGTAAAGTAA+AGG | + | chr3.2:26502090-26502109 | None:intergenic | 40.0% | |
| ACATTTGGAAAGGTAAGCAG+GGG | + | chr3.2:26503389-26503408 | None:intergenic | 40.0% | |
| ACGTCTTCAACTTCAAGTGT+CGG | + | chr3.2:26504187-26504206 | None:intergenic | 40.0% | |
| AGATAGTAGCAGTCTACAGT+GGG | + | chr3.2:26504123-26504142 | None:intergenic | 40.0% | |
| ATGTCACAACGCATATGGTA+AGG | - | chr3.2:26504634-26504653 | MS.gene067530:intron | 40.0% | |
| ATTACTCTTCTTTGCTGGGT+TGG | - | chr3.2:26502241-26502260 | MS.gene067530:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+AGG | - | chr3.2:26504467-26504486 | MS.gene067530:intron | 40.0% | |
| CATATCCTATGGATGATTGG+AGG | + | chr3.2:26505280-26505299 | None:intergenic | 40.0% | |
| CCATTAGAAAAGCTTGAGCA+AGG | + | chr3.2:26504890-26504909 | None:intergenic | 40.0% | |
| CCTCACAAGTCAAACAAAAC+CGG | + | chr3.2:26502847-26502866 | None:intergenic | 40.0% | |
| CGGTTATTACTCTTCTTTGC+TGG | - | chr3.2:26502236-26502255 | MS.gene067530:intron | 40.0% | |
| CTACTATCTGATTGGGACTT+GGG | - | chr3.2:26504134-26504153 | MS.gene067530:intron | 40.0% | |
| GACATTTGGAAAGGTAAGCA+GGG | + | chr3.2:26503390-26503409 | None:intergenic | 40.0% | |
| GATTGGGACTTGGGTAATAT+AGG | - | chr3.2:26504143-26504162 | MS.gene067530:intron | 40.0% | |
| GATTTACCTCAAACACACCA+TGG | + | chr3.2:26504769-26504788 | None:intergenic | 40.0% | |
| GGTTGAAAATTAAGACAGGG+TGG | + | chr3.2:26502144-26502163 | None:intergenic | 40.0% | |
| GTAGACTGCTACTATCTGAT+TGG | - | chr3.2:26504126-26504145 | MS.gene067530:intron | 40.0% | |
| GTTTGGGAAGGAGAAAAAAG+TGG | + | chr3.2:26502106-26502125 | None:intergenic | 40.0% | |
| TAGATCCTCCAATCATCCAT+AGG | - | chr3.2:26505272-26505291 | MS.gene067530:CDS | 40.0% | |
| TCTATGACCCCTCATTCATT+TGG | - | chr3.2:26503151-26503170 | MS.gene067530:intron | 40.0% | |
| TGAAAAGGACGAAAATGGCA+TGG | + | chr3.2:26503094-26503113 | None:intergenic | 40.0% | |
| TGACATTTGGAAAGGTAAGC+AGG | + | chr3.2:26503391-26503410 | None:intergenic | 40.0% | |
| TGTTGGACAGGACAGTTTAT+TGG | - | chr3.2:26504743-26504762 | MS.gene067530:intron | 40.0% | |
| TTGGCCAAACAAAGAGGATA+TGG | + | chr3.2:26502045-26502064 | None:intergenic | 40.0% | |
| ! | ATGGTCTTAGCTCCTAATAC+AGG | + | chr3.2:26503910-26503929 | None:intergenic | 40.0% |
| ! | CCTTGCTCAAGCTTTTCTAA+TGG | - | chr3.2:26504887-26504906 | MS.gene067530:intron | 40.0% |
| ! | GTTGCTTTGGATGTAAAAGC+TGG | - | chr3.2:26502202-26502221 | MS.gene067530:intron | 40.0% |
| ! | TCACATCATTTTCGCCCATT+TGG | + | chr3.2:26503216-26503235 | None:intergenic | 40.0% |
| ! | TGGATTTCAGAAAAAGGTGC+AGG | - | chr3.2:26505310-26505329 | MS.gene067530:CDS | 40.0% |
| ! | TGGTCTGTTCTATGTTGCTT+TGG | - | chr3.2:26502189-26502208 | MS.gene067530:intron | 40.0% |
| !! | AAAAGCTGGTTCTTTTACGG+CGG | - | chr3.2:26502216-26502235 | MS.gene067530:intron | 40.0% |
| !! | CACTCTAAAGCATGATCCAA+AGG | - | chr3.2:26504799-26504818 | MS.gene067530:intron | 40.0% |
| !! | GTTTTGACAGCTTGCTTTAC+AGG | - | chr3.2:26504373-26504392 | MS.gene067530:intron | 40.0% |
| !! | TGGATCATGCTTTAGAGTGA+TGG | + | chr3.2:26504798-26504817 | None:intergenic | 40.0% |
| !!! | CGGTTTTGTTTGACTTGTGA+GGG | - | chr3.2:26502845-26502864 | MS.gene067530:intron | 40.0% |
| !!! | GGTTTTGTTTGACTTGTGAG+GGG | - | chr3.2:26502846-26502865 | MS.gene067530:intron | 40.0% |
| !!! | GTTTTGTTTGACTTGTGAGG+GGG | - | chr3.2:26502847-26502866 | MS.gene067530:intron | 40.0% |
| !!! | TCTTTTTTTTTGGTGGTGCC+GGG | + | chr3.2:26504500-26504519 | None:intergenic | 40.0% |
| !!! | TGCACCTTTTTCTGAAATCC+AGG | + | chr3.2:26505311-26505330 | None:intergenic | 40.0% |
| AATTAACAGCTGCCAGCAGT+TGG | - | chr3.2:26505081-26505100 | MS.gene067530:CDS | 45.0% | |
| ACAGGACAGTTTATTGGCCA+TGG | - | chr3.2:26504749-26504768 | MS.gene067530:intron | 45.0% | |
| ATCTATCAGTGCTGTCGTGT+AGG | + | chr3.2:26504236-26504255 | None:intergenic | 45.0% | |
| CAGATAGTAGCAGTCTACAG+TGG | + | chr3.2:26504124-26504143 | None:intergenic | 45.0% | |
| CCAAAGTTCGAAACTCTACC+AGG | - | chr3.2:26503319-26503338 | MS.gene067530:intron | 45.0% | |
| CCTGGTAGAGTTTCGAACTT+TGG | + | chr3.2:26503322-26503341 | None:intergenic | 45.0% | |
| CTACCATGTTCAAGGAGATG+TGG | + | chr3.2:26503353-26503372 | None:intergenic | 45.0% | |
| CTTCCACATCTCCTTGAACA+TGG | - | chr3.2:26503347-26503366 | MS.gene067530:intron | 45.0% | |
| GATAGTAGCAGTCTACAGTG+GGG | + | chr3.2:26504122-26504141 | None:intergenic | 45.0% | |
| GCTACTATCTGATTGGGACT+TGG | - | chr3.2:26504133-26504152 | MS.gene067530:intron | 45.0% | |
| GGAAGGAGAAAAAAGTGGAG+GGG | + | chr3.2:26502101-26502120 | None:intergenic | 45.0% | |
| GGGAAGGAGAAAAAAGTGGA+GGG | + | chr3.2:26502102-26502121 | None:intergenic | 45.0% | |
| TATTGGCCATGGTGTGTTTG+AGG | - | chr3.2:26504760-26504779 | MS.gene067530:intron | 45.0% | |
| TCTAATGGCTCCTTTCTTCG+TGG | - | chr3.2:26504902-26504921 | MS.gene067530:intron | 45.0% | |
| TGGGAAGGAGAAAAAAGTGG+AGG | + | chr3.2:26502103-26502122 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | - | chr3.2:26504438-26504457 | MS.gene067530:intron | 45.0% |
| ! | TTCAGAAAAAGGTGCAGGCA+AGG | - | chr3.2:26505315-26505334 | MS.gene067530:CDS | 45.0% |
| !! | AGTGTCGGTGCTAAATAGCT+TGG | + | chr3.2:26504172-26504191 | None:intergenic | 45.0% |
| !! | GCTCAGTTGTTTTGTTGGAC+AGG | - | chr3.2:26504731-26504750 | MS.gene067530:intron | 45.0% |
| !! | TGGCTGCTCAGTTGTTTTGT+TGG | - | chr3.2:26504726-26504745 | MS.gene067530:intron | 45.0% |
| !!! | CCGGTTTTGTTTGACTTGTG+AGG | - | chr3.2:26502844-26502863 | MS.gene067530:intron | 45.0% |
| !!! | CTTTTTTTTTGGTGGTGCCG+GGG | + | chr3.2:26504499-26504518 | None:intergenic | 45.0% |
| !! | ATTAATTAAAAATTTAATTC+GGG | + | chr3.2:26502435-26502454 | None:intergenic | 5.0% |
| !! | CATTAATTAAAAATTTAATT+CGG | + | chr3.2:26502436-26502455 | None:intergenic | 5.0% |
| ACCTCGAGAACCACGAAGAA+AGG | + | chr3.2:26504915-26504934 | None:intergenic | 50.0% | |
| CAACACTGACACAACGACAC+CGG | + | chr3.2:26504302-26504321 | None:intergenic | 50.0% | |
| CTCTTGAACTGCCCCCTTAT+TGG | + | chr3.2:26504987-26505006 | None:intergenic | 50.0% | |
| GTGGGGCATATGTGCTTATC+AGG | - | chr3.2:26504322-26504341 | MS.gene067530:intron | 50.0% | |
| GTTCGAAACTCTACCAGGAG+AGG | - | chr3.2:26503324-26503343 | MS.gene067530:intron | 50.0% | |
| TAATTCGGGGGATCGAACTC+CGG | + | chr3.2:26502421-26502440 | None:intergenic | 50.0% | |
| TCCTTTCTTCGTGGTTCTCG+AGG | - | chr3.2:26504911-26504930 | MS.gene067530:intron | 50.0% | |
| TCTCGCAAGCTTAGCTCAGT+TGG | + | chr3.2:26502527-26502546 | None:intergenic | 50.0% | |
| TTGCTTACGTCTCCAACTGC+TGG | + | chr3.2:26505096-26505115 | None:intergenic | 50.0% | |
| ! | GACAGCTTGCTTTACAGGGA+GGG | - | chr3.2:26504378-26504397 | MS.gene067530:intron | 50.0% |
| ! | TGACAGCTTGCTTTACAGGG+AGG | - | chr3.2:26504377-26504396 | MS.gene067530:intron | 50.0% |
| ! | TGTCGTTGTGTCAGTGTTGG+TGG | - | chr3.2:26504303-26504322 | MS.gene067530:intron | 50.0% |
| !! | GTCGTTGTGTCAGTGTTGGT+GGG | - | chr3.2:26504304-26504323 | MS.gene067530:intron | 50.0% |
| !! | TCGTTGTGTCAGTGTTGGTG+GGG | - | chr3.2:26504305-26504324 | MS.gene067530:intron | 50.0% |
| AAGGTCCGAGGTTCAAACCC+CGG | - | chr3.2:26504479-26504498 | MS.gene067530:intron | 55.0% | |
| CAGCTACGAACTCGCTTGGA+AGG | - | chr3.2:26502288-26502307 | MS.gene067530:intron | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr3.2:26504436-26504455 | None:intergenic | 55.0% | |
| CCAAGCGAGTTCGTAGCTGA+TGG | + | chr3.2:26502287-26502306 | None:intergenic | 55.0% | |
| CCATCAGCTACGAACTCGCT+TGG | - | chr3.2:26502284-26502303 | MS.gene067530:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr3.2:26504433-26504452 | MS.gene067530:intron | 55.0% | |
| GAAACGTGCACCAGCTCTGT+TGG | - | chr3.2:26504860-26504879 | MS.gene067530:intron | 55.0% | |
| GCAAGGTTGTCCAACAGAGC+TGG | + | chr3.2:26504873-26504892 | None:intergenic | 55.0% | |
| !! | CGGTGTCGTTGTGTCAGTGT+TGG | - | chr3.2:26504300-26504319 | MS.gene067530:intron | 55.0% |
| GGAGATGTGGAAGCCTCTCC+TGG | + | chr3.2:26503340-26503359 | None:intergenic | 60.0% | |
| ! | TGGTGCCGGGGTTTGAACCT+CGG | + | chr3.2:26504487-26504506 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 26501968 | 26505391 | 26501968 | ID=MS.gene067530 |
| chr3.2 | mRNA | 26501968 | 26505391 | 26501968 | ID=MS.gene067530.t1;Parent=MS.gene067530 |
| chr3.2 | exon | 26505050 | 26505391 | 26505050 | ID=MS.gene067530.t1.exon1;Parent=MS.gene067530.t1 |
| chr3.2 | CDS | 26505050 | 26505391 | 26505050 | ID=cds.MS.gene067530.t1;Parent=MS.gene067530.t1 |
| chr3.2 | exon | 26502578 | 26502640 | 26502578 | ID=MS.gene067530.t1.exon2;Parent=MS.gene067530.t1 |
| chr3.2 | CDS | 26502578 | 26502640 | 26502578 | ID=cds.MS.gene067530.t1;Parent=MS.gene067530.t1 |
| chr3.2 | exon | 26502427 | 26502498 | 26502427 | ID=MS.gene067530.t1.exon3;Parent=MS.gene067530.t1 |
| chr3.2 | CDS | 26502427 | 26502498 | 26502427 | ID=cds.MS.gene067530.t1;Parent=MS.gene067530.t1 |
| chr3.2 | exon | 26501968 | 26502084 | 26501968 | ID=MS.gene067530.t1.exon4;Parent=MS.gene067530.t1 |
| chr3.2 | CDS | 26501968 | 26502084 | 26501968 | ID=cds.MS.gene067530.t1;Parent=MS.gene067530.t1 |
| Gene Sequence |
| Protein sequence |
