Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03534.t1 | XP_013459271.1 | 97.5 | 197 | 5 | 0 | 1 | 197 | 1 | 197 | 2.70E-102 | 381.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03534.t1 | O13737 | 36.8 | 182 | 98 | 3 | 6 | 186 | 4 | 169 | 4.4e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03534.t1 | A0A072UUK5 | 97.5 | 197 | 5 | 0 | 1 | 197 | 1 | 197 | 1.9e-102 | 381.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03534 | MS.gene067529 | PPI |
| MS.gene067529 | MS.gene03534 | PPI |
| MS.gene03534 | MS.gene018908 | PPI |
| MS.gene03534 | MS.gene067528 | PPI |
| MS.gene067530 | MS.gene03534 | PPI |
| MS.gene03534 | MS.gene018905 | PPI |
| MS.gene03534 | MS.gene03531 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03534.t1 | MTR_3g435230 | 97.462 | 197 | 5 | 0 | 1 | 197 | 1 | 197 | 9.53e-140 | 388 |
| MS.gene03534.t1 | MTR_3g435250 | 76.650 | 197 | 46 | 0 | 1 | 197 | 1 | 197 | 1.01e-109 | 312 |
| MS.gene03534.t1 | MTR_3g435170 | 78.378 | 185 | 40 | 0 | 1 | 185 | 1 | 185 | 2.90e-108 | 308 |
| MS.gene03534.t1 | MTR_3g435200 | 73.096 | 197 | 51 | 1 | 1 | 197 | 1 | 195 | 1.51e-105 | 301 |
| MS.gene03534.t1 | MTR_3g435230 | 98.519 | 135 | 2 | 0 | 1 | 135 | 1 | 135 | 2.28e-92 | 266 |
| MS.gene03534.t1 | MTR_5g041930 | 63.131 | 198 | 71 | 2 | 2 | 197 | 5 | 202 | 1.90e-91 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03534.t1 | AT1G18720 | 62.626 | 198 | 71 | 1 | 1 | 195 | 5 | 202 | 1.69e-87 | 256 |
| MS.gene03534.t1 | AT1G18720 | 62.626 | 198 | 71 | 1 | 1 | 195 | 5 | 202 | 1.69e-87 | 256 |
| MS.gene03534.t1 | AT1G74440 | 60.000 | 195 | 71 | 2 | 1 | 190 | 5 | 197 | 1.90e-80 | 238 |
| MS.gene03534.t1 | AT1G74440 | 60.000 | 195 | 71 | 2 | 1 | 190 | 5 | 197 | 1.90e-80 | 238 |
Find 49 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGGATTGCAACGTTTAT+AGG | 0.263985 | 3.1:+27589666 | None:intergenic |
| GAAAAGCACTTTGCATTCTA+TGG | 0.289411 | 3.1:-27589705 | MS.gene03534:CDS |
| GGTTGGATTGGACAGTTTAT+TGG | 0.309728 | 3.1:-27586779 | MS.gene03534:CDS |
| CAATCCATATCCTCTTTGTT+TGG | 0.315131 | 3.1:-27589653 | MS.gene03534:CDS |
| TTTGCTTGAAATCCAGGATA+TGG | 0.315232 | 3.1:+27586477 | None:intergenic |
| TATGGATTGCAACGTTTATA+GGG | 0.334944 | 3.1:+27589667 | None:intergenic |
| GTCCAATCCAACCAATCAAT+TGG | 0.361090 | 3.1:+27586789 | None:intergenic |
| GAAACGTGCACCAGCTCTAT+TGG | 0.365026 | 3.1:-27586656 | MS.gene03534:CDS |
| GTTTGGGAGGGAGTGAAAAT+AGG | 0.368082 | 3.1:+27589588 | None:intergenic |
| TATAAGATTAAGAACTGTTT+GGG | 0.379547 | 3.1:+27589572 | None:intergenic |
| GAGGCCAAACAAAGAGGATA+TGG | 0.380706 | 3.1:+27589649 | None:intergenic |
| GTGTTGGTTGCCCAATTGAT+TGG | 0.399732 | 3.1:-27586800 | MS.gene03534:CDS |
| TTCACGTTTGCTTGAAATCC+AGG | 0.399905 | 3.1:+27586471 | None:intergenic |
| CACTCGGATTCGAACTTGCT+TGG | 0.412760 | 3.1:-27589407 | MS.gene03534:CDS |
| ATTGGATATGAGCCATATCC+TGG | 0.420935 | 3.1:-27586489 | MS.gene03534:CDS |
| GTATAAGATTAAGAACTGTT+TGG | 0.424126 | 3.1:+27589571 | None:intergenic |
| TCTAATCTTTCAGGTTGTGT+TGG | 0.439107 | 3.1:-27586816 | MS.gene03534:intron |
| GCCCAATTGATTGGTTGGAT+TGG | 0.447523 | 3.1:-27586791 | MS.gene03534:CDS |
| GTAGAATGAGAGCAGTGAAA+AGG | 0.456417 | 3.1:+27589625 | None:intergenic |
| GCTCATATCCAATGGATGAT+TGG | 0.461611 | 3.1:+27586499 | None:intergenic |
| TATTGGTCATGGTGCGTTTG+AGG | 0.463753 | 3.1:-27586762 | MS.gene03534:intron |
| GCTGCTTTGGATATTAAAGC+TGG | 0.472736 | 3.1:-27589489 | MS.gene03534:CDS |
| CGGATTCGAACTTGCTTGGA+AGG | 0.476428 | 3.1:-27589403 | MS.gene03534:intron |
| ACCTCAAGAATCACGAAGAA+AGG | 0.485544 | 3.1:+27586604 | None:intergenic |
| TCCAATCCAACCAATCAATT+GGG | 0.491597 | 3.1:+27586790 | None:intergenic |
| TAGAAGCTAATATTAAAGAA+TGG | 0.494663 | 3.1:-27586440 | MS.gene03534:CDS |
| TGGTTGCCCAATTGATTGGT+TGG | 0.499293 | 3.1:-27586796 | MS.gene03534:CDS |
| ATTGGACAGTTTATTGGTCA+TGG | 0.500038 | 3.1:-27586773 | MS.gene03534:CDS |
| AAGTTCGAATCCGAGTGAAT+TGG | 0.504810 | 3.1:+27589413 | None:intergenic |
| CCAAGGTTGAAAACAAAGAC+AGG | 0.511675 | 3.1:+27589546 | None:intergenic |
| ACCTTTCTTCGTGATTCTTG+AGG | 0.512452 | 3.1:-27586605 | MS.gene03534:intron |
| TAGGTCCTCCAATCATCCAT+TGG | 0.512839 | 3.1:-27586507 | MS.gene03534:CDS |
| AGTTTCATTGCCAATTCACT+CGG | 0.526168 | 3.1:-27589423 | MS.gene03534:CDS |
| AGCTAATATTAAAGAATGGA+AGG | 0.541622 | 3.1:-27586436 | MS.gene03534:CDS |
| TTCAAGCAAACGTGAAGGCA+AGG | 0.554942 | 3.1:-27586464 | MS.gene03534:CDS |
| AGATTAAGAACTGTTTGGGA+GGG | 0.555036 | 3.1:+27589576 | None:intergenic |
| TGGGAGGGAGTGAAAATAGG+AGG | 0.558963 | 3.1:+27589591 | None:intergenic |
| GGGAGGGAGTGAAAATAGGA+GGG | 0.569948 | 3.1:+27589592 | None:intergenic |
| AGGATATGGCTCATATCCAA+TGG | 0.583632 | 3.1:+27586491 | None:intergenic |
| CCATCAAAAGAGCTTGAACA+AGG | 0.587680 | 3.1:+27586629 | None:intergenic |
| CATATCCAATGGATGATTGG+AGG | 0.587801 | 3.1:+27586502 | None:intergenic |
| ACAAGGTTGTCCAATAGAGC+TGG | 0.589383 | 3.1:+27586646 | None:intergenic |
| AAGATTAAGAACTGTTTGGG+AGG | 0.603667 | 3.1:+27589575 | None:intergenic |
| ATGAGAGCAGTGAAAAGGAG+AGG | 0.633421 | 3.1:+27589630 | None:intergenic |
| GGAGGGAGTGAAAATAGGAG+GGG | 0.645109 | 3.1:+27589593 | None:intergenic |
| CAAGGTTGAAAACAAAGACA+GGG | 0.660110 | 3.1:+27589547 | None:intergenic |
| TGGATTTCAAGCAAACGTGA+AGG | 0.661217 | 3.1:-27586469 | MS.gene03534:CDS |
| AAAGGAGAGGCCAAACAAAG+AGG | 0.665681 | 3.1:+27589643 | None:intergenic |
| AAACGGTGAAGATGAAACCA+AGG | 0.684676 | 3.1:+27589529 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATTAAATAAGATAA+AGG | + | chr3.1:27588034-27588053 | None:intergenic | 10.0% |
| !!! | ACTATTTTAATTTGTTTTTT+AGG | - | chr3.1:27589607-27589626 | MS.gene03534:CDS | 10.0% |
| !!! | GTTTTTTTTTACTTATAATA+TGG | - | chr3.1:27588247-27588266 | MS.gene03534:intron | 10.0% |
| !! | AATGAGATGTTAAATTAATA+AGG | + | chr3.1:27588745-27588764 | None:intergenic | 15.0% |
| !! | ATTATTTACACATTTAAACA+AGG | - | chr3.1:27587068-27587087 | MS.gene03534:intron | 15.0% |
| !! | ATTCCATATATTGTATTATT+TGG | + | chr3.1:27586886-27586905 | None:intergenic | 15.0% |
| !! | TAAATAACAAAGGATAATAT+TGG | - | chr3.1:27588787-27588806 | MS.gene03534:intron | 15.0% |
| !! | TAATTAAATAAGATAAAGGT+TGG | + | chr3.1:27588030-27588049 | None:intergenic | 15.0% |
| !! | TCTTACTTAATATAAATCAA+AGG | + | chr3.1:27589279-27589298 | None:intergenic | 15.0% |
| !! | TTAAAAAAACTAAAACATAG+TGG | + | chr3.1:27588215-27588234 | None:intergenic | 15.0% |
| !! | TTTCTTCATATAATTTAGAA+CGG | + | chr3.1:27587967-27587986 | None:intergenic | 15.0% |
| !!! | AAAATGTAATTTGTATTGTA+TGG | + | chr3.1:27587302-27587321 | None:intergenic | 15.0% |
| !!! | CAAAAAATTATTTTTTCCAA+AGG | - | chr3.1:27588058-27588077 | MS.gene03534:intron | 15.0% |
| !!! | GTTTTTTTTGCTTATAATTT+GGG | + | chr3.1:27588008-27588027 | None:intergenic | 15.0% |
| !! | AAGTGACAATTAAAAATGAA+CGG | + | chr3.1:27588643-27588662 | None:intergenic | 20.0% |
| !! | TACTTAATATAAATCAAAGG+TGG | + | chr3.1:27589276-27589295 | None:intergenic | 20.0% |
| !! | TAGAAGCTAATATTAAAGAA+TGG | - | chr3.1:27589693-27589712 | MS.gene03534:CDS | 20.0% |
| !! | TATAAGATTAAGAACTGTTT+GGG | + | chr3.1:27586564-27586583 | None:intergenic | 20.0% |
| !! | TATTGACATATGAATCTAAA+GGG | - | chr3.1:27587549-27587568 | MS.gene03534:intron | 20.0% |
| !! | TGTCCAAATAATACAATATA+TGG | - | chr3.1:27586880-27586899 | MS.gene03534:intron | 20.0% |
| !! | TTATTGACATATGAATCTAA+AGG | - | chr3.1:27587548-27587567 | MS.gene03534:intron | 20.0% |
| !! | TTCCTATAAAACTTATTTCA+AGG | - | chr3.1:27588164-27588183 | MS.gene03534:intron | 20.0% |
| !! | TTTGTATGTTTAATGTGATA+AGG | + | chr3.1:27587805-27587824 | None:intergenic | 20.0% |
| !!! | AAACAATTTTCATTGGTTAT+TGG | + | chr3.1:27588137-27588156 | None:intergenic | 20.0% |
| !!! | ATCCTTGAAATAAGTTTTAT+AGG | + | chr3.1:27588169-27588188 | None:intergenic | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | + | chr3.1:27588144-27588163 | None:intergenic | 20.0% |
| !!! | GGTTTTTTTTGCTTATAATT+TGG | + | chr3.1:27588009-27588028 | None:intergenic | 20.0% |
| !!! | TAATAAAGTAGTTGATAGTT+GGG | - | chr3.1:27588393-27588412 | MS.gene03534:intron | 20.0% |
| !!! | TATAATTTGGGACAAAAAAA+TGG | + | chr3.1:27587996-27588015 | None:intergenic | 20.0% |
| !!! | TCAAGATTACATTTTTTTCA+GGG | + | chr3.1:27587761-27587780 | None:intergenic | 20.0% |
| !!! | TTAATAAAGTAGTTGATAGT+TGG | - | chr3.1:27588392-27588411 | MS.gene03534:intron | 20.0% |
| !!! | TTATCCTTTGTTATTTATTG+CGG | + | chr3.1:27588784-27588803 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTATCGTAATAGT+TGG | + | chr3.1:27586991-27587010 | None:intergenic | 20.0% |
| !!! | TTTTTACTTATAATATGGGA+CGG | - | chr3.1:27588252-27588271 | MS.gene03534:intron | 20.0% |
| ! | AAAACAAACATAATACTCCA+TGG | - | chr3.1:27587822-27587841 | MS.gene03534:intron | 25.0% |
| ! | AAGAGACACTTAAAAAGAAA+CGG | - | chr3.1:27588879-27588898 | MS.gene03534:intron | 25.0% |
| ! | AGCTAATATTAAAGAATGGA+AGG | - | chr3.1:27589697-27589716 | MS.gene03534:CDS | 25.0% |
| ! | ATTTAGAAAATGAAAGAGAG+AGG | + | chr3.1:27588112-27588131 | None:intergenic | 25.0% |
| ! | CTGAATAAATGTTGAATTAG+TGG | - | chr3.1:27587886-27587905 | MS.gene03534:intron | 25.0% |
| ! | CTTCACTTCATTAATTAAGT+TGG | + | chr3.1:27588302-27588321 | None:intergenic | 25.0% |
| ! | GTATAAGATTAAGAACTGTT+TGG | + | chr3.1:27586565-27586584 | None:intergenic | 25.0% |
| ! | GTCAATAACGAATTCATTAT+TGG | + | chr3.1:27587536-27587555 | None:intergenic | 25.0% |
| ! | TTACCATTAGACTAAACTAT+TGG | + | chr3.1:27586820-27586839 | None:intergenic | 25.0% |
| ! | TTGTGAAAAATAATAGAGCA+AGG | + | chr3.1:27589425-27589444 | None:intergenic | 25.0% |
| ! | TTTAATGTGATAAGGTTCAT+TGG | + | chr3.1:27587797-27587816 | None:intergenic | 25.0% |
| ! | TTTGAAAGTGACAGTTAAAT+AGG | - | chr3.1:27588838-27588857 | MS.gene03534:intron | 25.0% |
| ! | TTTGATTCAAATTGGAAACA+AGG | - | chr3.1:27589581-27589600 | MS.gene03534:CDS | 25.0% |
| !! | GAAACAATTATTGATTGTCT+TGG | + | chr3.1:27588684-27588703 | None:intergenic | 25.0% |
| !! | TTCATATAATTTAGAACGGA+TGG | + | chr3.1:27587963-27587982 | None:intergenic | 25.0% |
| !!! | AGGGATAAATTTGTCATTTT+GGG | - | chr3.1:27588553-27588572 | MS.gene03534:intron | 25.0% |
| !!! | CTTTGCATTTAATTTTCCTT+TGG | + | chr3.1:27588077-27588096 | None:intergenic | 25.0% |
| !!! | GTCAAGATTACATTTTTTTC+AGG | + | chr3.1:27587762-27587781 | None:intergenic | 25.0% |
| !!! | TTCTTTTTAAGTGTCTCTTT+TGG | + | chr3.1:27588878-27588897 | None:intergenic | 25.0% |
| AAATCATTGATCCATCCTAT+TGG | - | chr3.1:27589395-27589414 | MS.gene03534:intron | 30.0% | |
| AAATGCATCCTTATCATCAT+AGG | - | chr3.1:27587711-27587730 | MS.gene03534:intron | 30.0% | |
| AATGCAGGAAAACAACAAAT+TGG | - | chr3.1:27589165-27589184 | MS.gene03534:intron | 30.0% | |
| ACTCCAATAGTTTAGTCTAA+TGG | - | chr3.1:27586814-27586833 | MS.gene03534:intron | 30.0% | |
| AGTAAGATTCTGCTTTGATT+AGG | - | chr3.1:27589292-27589311 | MS.gene03534:intron | 30.0% | |
| GAGACATGTTTGATATACTT+AGG | + | chr3.1:27588419-27588438 | None:intergenic | 30.0% | |
| GTATTAAGTAAGATATGGGA+CGG | - | chr3.1:27588907-27588926 | MS.gene03534:intron | 30.0% | |
| TATAAGTGCCTATGATGATA+AGG | + | chr3.1:27587722-27587741 | None:intergenic | 30.0% | |
| TATATGTGTTAGAACCAAGT+TGG | + | chr3.1:27587154-27587173 | None:intergenic | 30.0% | |
| TGACAATTAAAAATGAACGG+AGG | + | chr3.1:27588640-27588659 | None:intergenic | 30.0% | |
| TGATTCTTGAGGTAATTACT+TGG | - | chr3.1:27589539-27589558 | MS.gene03534:CDS | 30.0% | |
| TTAGCATAATAGGCACAAAT+AGG | - | chr3.1:27588360-27588379 | MS.gene03534:intron | 30.0% | |
| TTATCATCATAGGCACTTAT+AGG | - | chr3.1:27587721-27587740 | MS.gene03534:intron | 30.0% | |
| TTGGTTCCTCATTATAGATT+AGG | - | chr3.1:27587177-27587196 | MS.gene03534:intron | 30.0% | |
| ! | ATATGGATTGCAACGTTTAT+AGG | + | chr3.1:27586470-27586489 | None:intergenic | 30.0% |
| ! | GGTTCTAACACATATAAACT+TGG | - | chr3.1:27587158-27587177 | MS.gene03534:intron | 30.0% |
| ! | GTAAAAAAGAGCGTAGAAAA+CGG | + | chr3.1:27586624-27586643 | None:intergenic | 30.0% |
| ! | TATGGATTGCAACGTTTATA+GGG | + | chr3.1:27586469-27586488 | None:intergenic | 30.0% |
| ! | TGTCTCTTTTATTCATTGAG+TGG | - | chr3.1:27588433-27588452 | MS.gene03534:intron | 30.0% |
| !! | AGGGAGTATTAAGTAAGATA+TGG | - | chr3.1:27588902-27588921 | MS.gene03534:intron | 30.0% |
| !! | ATTAAAGCTGGTTCTTTTGT+TGG | - | chr3.1:27586656-27586675 | MS.gene03534:CDS | 30.0% |
| !! | CAGGGATAAATTTGTCATTT+TGG | - | chr3.1:27588552-27588571 | MS.gene03534:intron | 30.0% |
| !! | CTTCATCACTTTTCTTTGTT+GGG | - | chr3.1:27586679-27586698 | MS.gene03534:intron | 30.0% |
| !! | GGGAGTATTAAGTAAGATAT+GGG | - | chr3.1:27588903-27588922 | MS.gene03534:intron | 30.0% |
| !!! | AATTTGTCATTTTGGGTGTT+AGG | - | chr3.1:27588560-27588579 | MS.gene03534:intron | 30.0% |
| !!! | ATTTGTCATTTTGGGTGTTA+GGG | - | chr3.1:27588561-27588580 | MS.gene03534:intron | 30.0% |
| !!! | GAACTGGTTTTGATTCAAAT+TGG | - | chr3.1:27589573-27589592 | MS.gene03534:CDS | 30.0% |
| AAGATTAAGAACTGTTTGGG+AGG | + | chr3.1:27586561-27586580 | None:intergenic | 35.0% | |
| AATGCAGGAAAGCAACAAAT+TGG | - | chr3.1:27588510-27588529 | MS.gene03534:intron | 35.0% | |
| ACAATGAACATGCAAGGTAT+AGG | - | chr3.1:27587921-27587940 | MS.gene03534:intron | 35.0% | |
| ACGGAGGTAGTATAAATCAA+AGG | + | chr3.1:27588624-27588643 | None:intergenic | 35.0% | |
| ACTATCAAGCTTCATTTACG+TGG | + | chr3.1:27587678-27587697 | None:intergenic | 35.0% | |
| AGACACTTAAAAAGAAACGG+AGG | - | chr3.1:27588882-27588901 | MS.gene03534:intron | 35.0% | |
| AGATTAAGAACTGTTTGGGA+GGG | + | chr3.1:27586560-27586579 | None:intergenic | 35.0% | |
| AGGGAAATGACTTGATATTC+AGG | - | chr3.1:27588533-27588552 | MS.gene03534:intron | 35.0% | |
| AGTCTATTGTTGATGCTAAG+AGG | - | chr3.1:27587625-27587644 | MS.gene03534:intron | 35.0% | |
| AGTTTCATTGCCAATTCACT+CGG | - | chr3.1:27586710-27586729 | MS.gene03534:intron | 35.0% | |
| ATTGGACAGTTTATTGGTCA+TGG | - | chr3.1:27589360-27589379 | MS.gene03534:intron | 35.0% | |
| CAAGGTTGAAAACAAAGACA+GGG | + | chr3.1:27586589-27586608 | None:intergenic | 35.0% | |
| CAATCCATATCCTCTTTGTT+TGG | - | chr3.1:27586480-27586499 | MS.gene03534:CDS | 35.0% | |
| CAGGAAAACAACAAATTGGA+GGG | - | chr3.1:27589169-27589188 | MS.gene03534:intron | 35.0% | |
| CTCTCCGCAATAAATAACAA+AGG | - | chr3.1:27588777-27588796 | MS.gene03534:intron | 35.0% | |
| GACACTTAAAAAGAAACGGA+GGG | - | chr3.1:27588883-27588902 | MS.gene03534:intron | 35.0% | |
| GAGGTAGTATAAATCAAAGG+TGG | + | chr3.1:27588621-27588640 | None:intergenic | 35.0% | |
| GATTAGGACTCTAATCTTTC+AGG | - | chr3.1:27589308-27589327 | MS.gene03534:intron | 35.0% | |
| GGGAAATGACTTGATATTCA+GGG | - | chr3.1:27588534-27588553 | MS.gene03534:intron | 35.0% | |
| TACTTATAATATGGGACGGA+GGG | - | chr3.1:27588256-27588275 | MS.gene03534:intron | 35.0% | |
| TCATTGACAATGAACATGCA+AGG | - | chr3.1:27587915-27587934 | MS.gene03534:intron | 35.0% | |
| TCCAATCCAACCAATCAATT+GGG | + | chr3.1:27589346-27589365 | None:intergenic | 35.0% | |
| TCTTTATGTCTTGACCAACT+TGG | - | chr3.1:27587137-27587156 | MS.gene03534:intron | 35.0% | |
| TGCAATTAGGGTTAGAGATT+TGG | - | chr3.1:27588585-27588604 | MS.gene03534:intron | 35.0% | |
| TGCCTTCTATGAAATTTGCA+AGG | - | chr3.1:27587852-27587871 | MS.gene03534:intron | 35.0% | |
| TGCCTTGCAAATTTCATAGA+AGG | + | chr3.1:27587857-27587876 | None:intergenic | 35.0% | |
| TTACTTATAATATGGGACGG+AGG | - | chr3.1:27588255-27588274 | MS.gene03534:intron | 35.0% | |
| TTTGCTTGAAATCCAGGATA+TGG | + | chr3.1:27589659-27589678 | None:intergenic | 35.0% | |
| ! | AGTTGGTCTATGTCTAAAAG+TGG | + | chr3.1:27586974-27586993 | None:intergenic | 35.0% |
| ! | CTTGTTCAAGCTCTTTTGAT+GGG | - | chr3.1:27589505-27589524 | MS.gene03534:CDS | 35.0% |
| !! | GAAAAGCACTTTGCATTCTA+TGG | - | chr3.1:27586428-27586447 | MS.gene03534:CDS | 35.0% |
| !! | GCTTCATCACTTTTCTTTGT+TGG | - | chr3.1:27586678-27586697 | MS.gene03534:intron | 35.0% |
| !! | TCTAATCTTTCAGGTTGTGT+TGG | - | chr3.1:27589317-27589336 | MS.gene03534:intron | 35.0% |
| AAACGGTGAAGATGAAACCA+AGG | + | chr3.1:27586607-27586626 | None:intergenic | 40.0% | |
| AAGTTCGAATCCGAGTGAAT+TGG | + | chr3.1:27586723-27586742 | None:intergenic | 40.0% | |
| ACACTCAACTATCCACCATT+TGG | + | chr3.1:27587214-27587233 | None:intergenic | 40.0% | |
| ACCAAGGAAAAATGTGTGAG+TGG | - | chr3.1:27588462-27588481 | MS.gene03534:intron | 40.0% | |
| ACCTCAAGAATCACGAAGAA+AGG | + | chr3.1:27589532-27589551 | None:intergenic | 40.0% | |
| ACCTTTCTTCGTGATTCTTG+AGG | - | chr3.1:27589528-27589547 | MS.gene03534:CDS | 40.0% | |
| ACGTGCAGTCTTAGCATAAT+AGG | - | chr3.1:27588350-27588369 | MS.gene03534:intron | 40.0% | |
| AGGATATGGCTCATATCCAA+TGG | + | chr3.1:27589645-27589664 | None:intergenic | 40.0% | |
| ATAGAGCAAGGTTGTCCAAT+AGG | + | chr3.1:27589413-27589432 | None:intergenic | 40.0% | |
| ATTGGATATGAGCCATATCC+TGG | - | chr3.1:27589644-27589663 | MS.gene03534:CDS | 40.0% | |
| CAGGAAAGCAACAAATTGGA+GGG | - | chr3.1:27588514-27588533 | MS.gene03534:intron | 40.0% | |
| CATATCCAATGGATGATTGG+AGG | + | chr3.1:27589634-27589653 | None:intergenic | 40.0% | |
| CATGCAAGGTATAGGATCAT+AGG | - | chr3.1:27587929-27587948 | MS.gene03534:intron | 40.0% | |
| CCAAGGAAAAATGTGTGAGT+GGG | - | chr3.1:27588463-27588482 | MS.gene03534:intron | 40.0% | |
| CCAAGGTTGAAAACAAAGAC+AGG | + | chr3.1:27586590-27586609 | None:intergenic | 40.0% | |
| CCATCAAAAGAGCTTGAACA+AGG | + | chr3.1:27589507-27589526 | None:intergenic | 40.0% | |
| GCAGGAAAACAACAAATTGG+AGG | - | chr3.1:27589168-27589187 | MS.gene03534:intron | 40.0% | |
| GCTCATATCCAATGGATGAT+TGG | + | chr3.1:27589637-27589656 | None:intergenic | 40.0% | |
| GGCAGACCTAATCTATAATG+AGG | + | chr3.1:27587186-27587205 | None:intergenic | 40.0% | |
| GTAGAATGAGAGCAGTGAAA+AGG | + | chr3.1:27586511-27586530 | None:intergenic | 40.0% | |
| GTCCAATCCAACCAATCAAT+TGG | + | chr3.1:27589347-27589366 | None:intergenic | 40.0% | |
| TAAGTAAGATATGGGACGGA+GGG | - | chr3.1:27588911-27588930 | MS.gene03534:intron | 40.0% | |
| TATTTGGACACACGTGAACT+CGG | + | chr3.1:27586870-27586889 | None:intergenic | 40.0% | |
| TGGATTTCAAGCAAACGTGA+AGG | - | chr3.1:27589664-27589683 | MS.gene03534:CDS | 40.0% | |
| TTAAGTAAGATATGGGACGG+AGG | - | chr3.1:27588910-27588929 | MS.gene03534:intron | 40.0% | |
| TTCACGTTTGCTTGAAATCC+AGG | + | chr3.1:27589665-27589684 | None:intergenic | 40.0% | |
| ! | CCTTGTTCAAGCTCTTTTGA+TGG | - | chr3.1:27589504-27589523 | MS.gene03534:CDS | 40.0% |
| ! | GCTGCTTTGGATATTAAAGC+TGG | - | chr3.1:27586644-27586663 | MS.gene03534:CDS | 40.0% |
| ! | GGTTGGATTGGACAGTTTAT+TGG | - | chr3.1:27589354-27589373 | MS.gene03534:intron | 40.0% |
| ! | TGATGCTAAGAGGCACAAAT+AGG | - | chr3.1:27587635-27587654 | MS.gene03534:intron | 40.0% |
| !! | AATGGTGGATAGTTGAGTGT+AGG | - | chr3.1:27587214-27587233 | MS.gene03534:intron | 40.0% |
| !! | ATAGAAGGCATTTGATGCCA+TGG | + | chr3.1:27587842-27587861 | None:intergenic | 40.0% |
| !! | ATGGTGGATAGTTGAGTGTA+GGG | - | chr3.1:27587215-27587234 | MS.gene03534:intron | 40.0% |
| !!! | CCTGTCTTTGTTTTCAACCT+TGG | - | chr3.1:27586587-27586606 | MS.gene03534:intron | 40.0% |
| AAAGGAGAGGCCAAACAAAG+AGG | + | chr3.1:27586493-27586512 | None:intergenic | 45.0% | |
| ACAAGGTTGTCCAATAGAGC+TGG | + | chr3.1:27589490-27589509 | None:intergenic | 45.0% | |
| ACCAAGGAAAAATGCGTGAG+TGG | - | chr3.1:27589117-27589136 | MS.gene03534:intron | 45.0% | |
| ACTATCCACCATTTGGCTAG+AGG | + | chr3.1:27587207-27587226 | None:intergenic | 45.0% | |
| AGCAAGGTTGTCCAATAGGA+TGG | + | chr3.1:27589409-27589428 | None:intergenic | 45.0% | |
| ATGAGAGCAGTGAAAAGGAG+AGG | + | chr3.1:27586506-27586525 | None:intergenic | 45.0% | |
| ATTTGGACACACGTGAACTC+GGG | + | chr3.1:27586869-27586888 | None:intergenic | 45.0% | |
| CCAAGGAAAAATGCGTGAGT+GGG | - | chr3.1:27589118-27589137 | MS.gene03534:intron | 45.0% | |
| GAGGCCAAACAAAGAGGATA+TGG | + | chr3.1:27586487-27586506 | None:intergenic | 45.0% | |
| GAGTGGTTCAAGACTAATGC+AGG | - | chr3.1:27588495-27588514 | MS.gene03534:intron | 45.0% | |
| GCAGGAAAGCAACAAATTGG+AGG | - | chr3.1:27588513-27588532 | MS.gene03534:intron | 45.0% | |
| GTGAGATAGTTGTAGTCCTG+TGG | - | chr3.1:27588321-27588340 | MS.gene03534:intron | 45.0% | |
| GTTTGGGAGGGAGTGAAAAT+AGG | + | chr3.1:27586548-27586567 | None:intergenic | 45.0% | |
| TAGGTCCTCCAATCATCCAT+TGG | - | chr3.1:27589626-27589645 | MS.gene03534:CDS | 45.0% | |
| TATTGGTCATGGTGCGTTTG+AGG | - | chr3.1:27589371-27589390 | MS.gene03534:intron | 45.0% | |
| TGGTTGCCCAATTGATTGGT+TGG | - | chr3.1:27589337-27589356 | MS.gene03534:intron | 45.0% | |
| TTCAAGCAAACGTGAAGGCA+AGG | - | chr3.1:27589669-27589688 | MS.gene03534:CDS | 45.0% | |
| ! | CCCACTCACACATTTTTCCT+TGG | + | chr3.1:27588466-27588485 | None:intergenic | 45.0% |
| ! | CTTGGCATAGTGCTTTGAAC+TGG | - | chr3.1:27589557-27589576 | MS.gene03534:CDS | 45.0% |
| ! | GCCCAATTGATTGGTTGGAT+TGG | - | chr3.1:27589342-27589361 | MS.gene03534:intron | 45.0% |
| ! | TGGTGGATAGTTGAGTGTAG+GGG | - | chr3.1:27587216-27587235 | MS.gene03534:intron | 45.0% |
| !! | GTGTTGGTTGCCCAATTGAT+TGG | - | chr3.1:27589333-27589352 | MS.gene03534:intron | 45.0% |
| !!! | CGCTCTTTTTTACGCTGCTT+TGG | - | chr3.1:27586631-27586650 | MS.gene03534:CDS | 45.0% |
| !!! | TAAAAATCATAAAATATTTT+GGG | + | chr3.1:27587463-27587482 | None:intergenic | 5.0% |
| !!! | TTAAAAATCATAAAATATTT+TGG | + | chr3.1:27587464-27587483 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTACTTATAATAT+GGG | - | chr3.1:27588248-27588267 | MS.gene03534:intron | 5.0% |
| CATTGAGTGGCTCAAGACCA+AGG | - | chr3.1:27588446-27588465 | MS.gene03534:intron | 50.0% | |
| GAAACGTGCACCAGCTCTAT+TGG | - | chr3.1:27589477-27589496 | MS.gene03534:CDS | 50.0% | |
| GGAGGGAGTGAAAATAGGAG+GGG | + | chr3.1:27586543-27586562 | None:intergenic | 50.0% | |
| GGGAGGGAGTGAAAATAGGA+GGG | + | chr3.1:27586544-27586563 | None:intergenic | 50.0% | |
| GGGTGTTAGGGCTGCAATTA+GGG | - | chr3.1:27588573-27588592 | MS.gene03534:intron | 50.0% | |
| TAGGTCTGCCTCTAGCCAAA+TGG | - | chr3.1:27587196-27587215 | MS.gene03534:intron | 50.0% | |
| TGAGTGGGTCAGAGTTTGAG+TGG | - | chr3.1:27588478-27588497 | MS.gene03534:intron | 50.0% | |
| TGGGAGGGAGTGAAAATAGG+AGG | + | chr3.1:27586545-27586564 | None:intergenic | 50.0% | |
| TGGGTGTTAGGGCTGCAATT+AGG | - | chr3.1:27588572-27588591 | MS.gene03534:intron | 50.0% | |
| ! | CACTCGGATTCGAACTTGCT+TGG | - | chr3.1:27586726-27586745 | MS.gene03534:intron | 50.0% |
| ! | CCCACTCACGCATTTTTCCT+TGG | + | chr3.1:27589121-27589140 | None:intergenic | 50.0% |
| ! | CGGATTCGAACTTGCTTGGA+AGG | - | chr3.1:27586730-27586749 | MS.gene03534:intron | 50.0% |
| ! | GACTGCACGTTTTTCACCAC+AGG | + | chr3.1:27588340-27588359 | None:intergenic | 50.0% |
| GTCTGCCTCTAGCCAAATGG+TGG | - | chr3.1:27587199-27587218 | MS.gene03534:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 27586410 | 27589745 | 27586410 | ID=MS.gene03534 |
| chr3.1 | mRNA | 27586410 | 27589745 | 27586410 | ID=MS.gene03534.t1;Parent=MS.gene03534 |
| chr3.1 | exon | 27589404 | 27589745 | 27589404 | ID=MS.gene03534.t1.exon1;Parent=MS.gene03534.t1 |
| chr3.1 | CDS | 27589404 | 27589745 | 27589404 | ID=cds.MS.gene03534.t1;Parent=MS.gene03534.t1 |
| chr3.1 | exon | 27586763 | 27586825 | 27586763 | ID=MS.gene03534.t1.exon2;Parent=MS.gene03534.t1 |
| chr3.1 | CDS | 27586763 | 27586825 | 27586763 | ID=cds.MS.gene03534.t1;Parent=MS.gene03534.t1 |
| chr3.1 | exon | 27586606 | 27586677 | 27586606 | ID=MS.gene03534.t1.exon3;Parent=MS.gene03534.t1 |
| chr3.1 | CDS | 27586606 | 27586677 | 27586606 | ID=cds.MS.gene03534.t1;Parent=MS.gene03534.t1 |
| chr3.1 | exon | 27586410 | 27586526 | 27586410 | ID=MS.gene03534.t1.exon4;Parent=MS.gene03534.t1 |
| chr3.1 | CDS | 27586410 | 27586526 | 27586410 | ID=cds.MS.gene03534.t1;Parent=MS.gene03534.t1 |
| Gene Sequence |
| Protein sequence |
